data_4E87 # _entry.id 4E87 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4E87 NDB NA1693 RCSB RCSB071291 WWPDB D_1000071291 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2013-04-24 _pdbx_database_PDB_obs_spr.pdb_id 4JD8 _pdbx_database_PDB_obs_spr.replace_pdb_id 4E87 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DX4 'Lower resolution model' unspecified PDB 4E7Y . unspecified PDB 4E8S . unspecified PDB 4E8X . unspecified PDB 4E95 . unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4E87 _pdbx_database_status.recvd_initial_deposition_date 2012-03-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Ruiz-Morte, S.' 2 'Winter, G' 3 'Cardin, C.J.' 4 # _citation.id primary _citation.title 'Cooperativity in the DNA binding of ruthenium light switch complexes' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hall, J.P.' 1 primary 'Winter, G.' 2 primary 'Ruiz-Morte, S.' 3 primary 'Kelly, J.' 4 primary 'Cardin, C.J.' 5 # _cell.entry_id 4E87 _cell.length_a 37.370 _cell.length_b 37.370 _cell.length_c 53.020 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E87 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*TP*GP*CP*AP*T)-3'" 1808.229 2 ? ? ? ? 2 non-polymer syn 'Delta-Ru(phen)2(dppz) complex' 743.779 2 ? ? ? ? 3 water nat water 18.015 40 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DT)(DG)(DC)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ATGCAT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DG n 1 4 DC n 1 5 DA n 1 6 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA Purchased from ATDBio' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4E87 _struct_ref.pdbx_db_accession 4E87 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ATGCAT _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4E87 A 1 ? 6 ? 4E87 1 ? 6 ? 1 6 2 1 4E87 B 1 ? 6 ? 4E87 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0TN non-polymer . 'Delta-Ru(phen)2(dppz) complex' ? 'C42 H26 N8 Ru' 743.779 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 4E87 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details ;1ul 4mM rac-Ru(phen)2(dppz).Cl2, 1ul 2mM oligonucleotide, 8ul 40mM Sodium cacodylate, 12mM Spermine-HCl, 20mM BaCl2, 2% 2-methyl-2,4-pentanediol, 80mM NaCl, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-02-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Dual crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.6531 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.6531 # _reflns.entry_id 4E87 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.63 _reflns.d_resolution_high 1.94 _reflns.number_obs 3397 _reflns.number_all 3417 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.94 _reflns_shell.d_res_low 1.99 _reflns_shell.percent_possible_all 96.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4E87 _refine.ls_number_reflns_obs 2868 _refine.ls_number_reflns_all 3018 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.63 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 95.74 _refine.ls_R_factor_obs 0.18199 _refine.ls_R_factor_all 0.17854 _refine.ls_R_factor_R_work 0.1785 _refine.ls_R_factor_R_free 0.20888 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.8 _refine.ls_number_reflns_R_free 347 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 24.401 _refine.aniso_B[1][1] -0.26 _refine.aniso_B[2][2] -0.26 _refine.aniso_B[3][3] 0.39 _refine.aniso_B[1][2] -0.13 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.196 _refine.pdbx_overall_ESU_R_Free 0.157 _refine.overall_SU_ML 0.095 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.333 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 102 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 382 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 27.63 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.024 0.014 ? 396 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3.161 1.917 ? 628 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.088 0.200 ? 36 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.031 0.020 ? 232 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.001 _refine_ls_shell.number_reflns_R_work 153 _refine_ls_shell.R_factor_R_work 0.238 _refine_ls_shell.percent_reflns_obs 81.55 _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4E87 _struct.title 'Racemic-[Ru(phen)2(dppz)]2+ bound to synthetic DNA' _struct.pdbx_descriptor "5'-D(*AP*TP*GP*CP*AP*T)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E87 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Intercalation, DNA, racemic-[Ru(phen)2(dppz)]2+, Delta-[Ru(phen)2(dppz)]2+' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 1 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 1 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 2 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 2 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 3 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 3 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 3 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 4 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 4 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 4 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 5 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 5 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 6 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 6 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE 0TN A 101' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE 0TN B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DT A 2 ? DT A 2 . ? 1_555 ? 2 AC1 9 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 9 DC A 4 ? DC A 4 . ? 1_555 ? 4 AC1 9 DA A 5 ? DA A 5 . ? 6_665 ? 5 AC1 9 DT A 6 ? DT A 6 . ? 6_665 ? 6 AC1 9 DA B 1 ? DA B 1 . ? 6_665 ? 7 AC1 9 DC B 4 ? DC B 4 . ? 1_555 ? 8 AC1 9 DA B 5 ? DA B 5 . ? 1_555 ? 9 AC1 9 DT B 6 ? DT B 6 . ? 1_555 ? 10 AC2 7 DA A 1 ? DA A 1 . ? 2_665 ? 11 AC2 7 DC A 4 ? DC A 4 . ? 1_555 ? 12 AC2 7 DA A 5 ? DA A 5 . ? 1_555 ? 13 AC2 7 DT A 6 ? DT A 6 . ? 1_555 ? 14 AC2 7 DT B 2 ? DT B 2 . ? 1_555 ? 15 AC2 7 DG B 3 ? DG B 3 . ? 1_555 ? 16 AC2 7 DT B 6 ? DT B 6 . ? 2_665 ? # _database_PDB_matrix.entry_id 4E87 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4E87 _atom_sites.fract_transf_matrix[1][1] 0.026759 _atom_sites.fract_transf_matrix[1][2] 0.015450 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030899 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018861 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DA A 1 1 ? 5.642 22.097 -9.223 1.00 51.82 ? 1 DA A "O5'" 1 ATOM 2 C "C5'" . DA A 1 1 ? 4.463 22.166 -8.394 1.00 40.30 ? 1 DA A "C5'" 1 ATOM 3 C "C4'" . DA A 1 1 ? 4.548 23.434 -7.581 1.00 37.99 ? 1 DA A "C4'" 1 ATOM 4 O "O4'" . DA A 1 1 ? 3.309 23.618 -6.883 1.00 34.93 ? 1 DA A "O4'" 1 ATOM 5 C "C3'" . DA A 1 1 ? 5.617 23.434 -6.490 1.00 32.00 ? 1 DA A "C3'" 1 ATOM 6 O "O3'" . DA A 1 1 ? 6.017 24.780 -6.183 1.00 30.55 ? 1 DA A "O3'" 1 ATOM 7 C "C2'" . DA A 1 1 ? 4.880 22.843 -5.306 1.00 28.69 ? 1 DA A "C2'" 1 ATOM 8 C "C1'" . DA A 1 1 ? 3.513 23.470 -5.472 1.00 31.12 ? 1 DA A "C1'" 1 ATOM 9 N N9 . DA A 1 1 ? 2.405 22.659 -4.976 1.00 27.35 ? 1 DA A N9 1 ATOM 10 C C8 . DA A 1 1 ? 1.870 21.531 -5.550 1.00 24.32 ? 1 DA A C8 1 ATOM 11 N N7 . DA A 1 1 ? 0.791 21.093 -4.947 1.00 22.51 ? 1 DA A N7 1 ATOM 12 C C5 . DA A 1 1 ? 0.573 22.021 -3.942 1.00 21.24 ? 1 DA A C5 1 ATOM 13 C C6 . DA A 1 1 ? -0.416 22.128 -2.962 1.00 21.15 ? 1 DA A C6 1 ATOM 14 N N6 . DA A 1 1 ? -1.407 21.244 -2.816 1.00 19.37 ? 1 DA A N6 1 ATOM 15 N N1 . DA A 1 1 ? -0.339 23.172 -2.102 1.00 20.29 ? 1 DA A N1 1 ATOM 16 C C2 . DA A 1 1 ? 0.665 24.046 -2.243 1.00 18.94 ? 1 DA A C2 1 ATOM 17 N N3 . DA A 1 1 ? 1.620 24.085 -3.168 1.00 21.52 ? 1 DA A N3 1 ATOM 18 C C4 . DA A 1 1 ? 1.546 23.006 -3.965 1.00 23.48 ? 1 DA A C4 1 ATOM 19 P P . DT A 1 2 ? 7.516 24.903 -5.588 1.00 29.28 ? 2 DT A P 1 ATOM 20 O OP1 . DT A 1 2 ? 7.916 26.322 -5.540 1.00 35.01 ? 2 DT A OP1 1 ATOM 21 O OP2 . DT A 1 2 ? 8.330 23.933 -6.380 1.00 30.25 ? 2 DT A OP2 1 ATOM 22 O "O5'" . DT A 1 2 ? 7.428 24.414 -4.069 1.00 26.72 ? 2 DT A "O5'" 1 ATOM 23 C "C5'" . DT A 1 2 ? 6.988 25.312 -3.031 1.00 23.22 ? 2 DT A "C5'" 1 ATOM 24 C "C4'" . DT A 1 2 ? 6.680 24.529 -1.775 1.00 20.92 ? 2 DT A "C4'" 1 ATOM 25 O "O4'" . DT A 1 2 ? 5.417 23.815 -1.847 1.00 18.62 ? 2 DT A "O4'" 1 ATOM 26 C "C3'" . DT A 1 2 ? 7.755 23.489 -1.431 1.00 22.68 ? 2 DT A "C3'" 1 ATOM 27 O "O3'" . DT A 1 2 ? 8.225 23.777 -0.103 1.00 25.87 ? 2 DT A "O3'" 1 ATOM 28 C "C2'" . DT A 1 2 ? 7.020 22.166 -1.552 1.00 21.82 ? 2 DT A "C2'" 1 ATOM 29 C "C1'" . DT A 1 2 ? 5.606 22.587 -1.172 1.00 19.99 ? 2 DT A "C1'" 1 ATOM 30 N N1 . DT A 1 2 ? 4.541 21.648 -1.567 1.00 20.34 ? 2 DT A N1 1 ATOM 31 C C2 . DT A 1 2 ? 3.358 21.680 -0.854 1.00 20.86 ? 2 DT A C2 1 ATOM 32 O O2 . DT A 1 2 ? 3.137 22.474 0.044 1.00 21.67 ? 2 DT A O2 1 ATOM 33 N N3 . DT A 1 2 ? 2.429 20.754 -1.248 1.00 21.12 ? 2 DT A N3 1 ATOM 34 C C4 . DT A 1 2 ? 2.569 19.788 -2.228 1.00 20.41 ? 2 DT A C4 1 ATOM 35 O O4 . DT A 1 2 ? 1.649 18.998 -2.438 1.00 18.46 ? 2 DT A O4 1 ATOM 36 C C5 . DT A 1 2 ? 3.860 19.764 -2.887 1.00 19.52 ? 2 DT A C5 1 ATOM 37 C C7 . DT A 1 2 ? 4.112 18.745 -3.952 1.00 23.07 ? 2 DT A C7 1 ATOM 38 C C6 . DT A 1 2 ? 4.770 20.683 -2.527 1.00 19.75 ? 2 DT A C6 1 ATOM 39 P P . DG A 1 3 ? 9.708 23.478 0.429 1.00 22.30 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? 10.338 24.718 0.793 1.00 27.24 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? 10.374 22.550 -0.506 1.00 29.28 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? 9.355 22.523 1.655 1.00 24.94 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? 10.402 21.814 2.373 1.00 22.90 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? 10.052 21.745 3.839 1.00 20.14 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? 8.903 20.905 3.928 1.00 20.34 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? 11.091 21.114 4.766 1.00 20.91 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? 10.917 21.732 6.037 1.00 21.14 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? 10.729 19.637 4.758 1.00 22.30 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? 9.209 19.673 4.550 1.00 19.22 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? 8.611 18.623 3.744 1.00 18.17 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? 9.182 17.905 2.722 1.00 19.21 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? 8.366 17.041 2.183 1.00 18.22 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? 7.184 17.196 2.893 1.00 17.17 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? 5.936 16.507 2.776 1.00 16.91 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? 5.624 15.604 1.992 1.00 18.50 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? 5.006 16.970 3.697 1.00 15.80 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? 5.248 17.945 4.634 1.00 18.34 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? 4.221 18.246 5.441 1.00 21.39 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? 6.420 18.567 4.784 1.00 17.87 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? 7.329 18.150 3.879 1.00 19.06 ? 3 DG A C4 1 ATOM 61 P P . DC A 1 4 ? 11.958 21.602 7.199 1.00 22.54 ? 4 DC A P 1 ATOM 62 O OP1 . DC A 1 4 ? 12.028 22.785 8.017 1.00 26.35 ? 4 DC A OP1 1 ATOM 63 O OP2 . DC A 1 4 ? 13.223 20.893 6.902 1.00 27.63 ? 4 DC A OP2 1 ATOM 64 O "O5'" . DC A 1 4 ? 11.205 20.539 8.088 1.00 24.25 ? 4 DC A "O5'" 1 ATOM 65 C "C5'" . DC A 1 4 ? 9.997 20.866 8.785 1.00 20.29 ? 4 DC A "C5'" 1 ATOM 66 C "C4'" . DC A 1 4 ? 9.442 19.579 9.335 1.00 18.31 ? 4 DC A "C4'" 1 ATOM 67 O "O4'" . DC A 1 4 ? 8.884 18.852 8.242 1.00 19.15 ? 4 DC A "O4'" 1 ATOM 68 C "C3'" . DC A 1 4 ? 10.476 18.636 9.965 1.00 18.13 ? 4 DC A "C3'" 1 ATOM 69 O "O3'" . DC A 1 4 ? 10.105 18.483 11.331 1.00 18.75 ? 4 DC A "O3'" 1 ATOM 70 C "C2'" . DC A 1 4 ? 10.225 17.303 9.266 1.00 18.77 ? 4 DC A "C2'" 1 ATOM 71 C "C1'" . DC A 1 4 ? 8.877 17.499 8.606 1.00 17.26 ? 4 DC A "C1'" 1 ATOM 72 N N1 . DC A 1 4 ? 8.666 16.678 7.393 1.00 17.55 ? 4 DC A N1 1 ATOM 73 C C2 . DC A 1 4 ? 7.390 16.181 7.118 1.00 19.29 ? 4 DC A C2 1 ATOM 74 O O2 . DC A 1 4 ? 6.437 16.520 7.846 1.00 18.35 ? 4 DC A O2 1 ATOM 75 N N3 . DC A 1 4 ? 7.211 15.366 6.047 1.00 19.94 ? 4 DC A N3 1 ATOM 76 C C4 . DC A 1 4 ? 8.246 15.044 5.272 1.00 21.00 ? 4 DC A C4 1 ATOM 77 N N4 . DC A 1 4 ? 8.019 14.223 4.245 1.00 21.54 ? 4 DC A N4 1 ATOM 78 C C5 . DC A 1 4 ? 9.564 15.537 5.529 1.00 23.15 ? 4 DC A C5 1 ATOM 79 C C6 . DC A 1 4 ? 9.726 16.342 6.594 1.00 22.49 ? 4 DC A C6 1 ATOM 80 P P . DA A 1 5 ? 10.629 19.320 12.529 1.00 22.27 ? 5 DA A P 1 ATOM 81 O OP1 . DA A 1 5 ? 10.318 20.781 12.493 1.00 21.39 ? 5 DA A OP1 1 ATOM 82 O OP2 . DA A 1 5 ? 12.026 18.817 12.616 1.00 26.63 ? 5 DA A OP2 1 ATOM 83 O "O5'" . DA A 1 5 ? 9.944 18.754 13.846 1.00 21.85 ? 5 DA A "O5'" 1 ATOM 84 C "C5'" . DA A 1 5 ? 8.632 19.144 14.329 1.00 19.56 ? 5 DA A "C5'" 1 ATOM 85 C "C4'" . DA A 1 5 ? 8.230 18.142 15.391 1.00 20.93 ? 5 DA A "C4'" 1 ATOM 86 O "O4'" . DA A 1 5 ? 7.926 16.872 14.794 1.00 21.37 ? 5 DA A "O4'" 1 ATOM 87 C "C3'" . DA A 1 5 ? 9.301 17.851 16.436 1.00 24.10 ? 5 DA A "C3'" 1 ATOM 88 O "O3'" . DA A 1 5 ? 8.684 17.606 17.685 1.00 27.37 ? 5 DA A "O3'" 1 ATOM 89 C "C2'" . DA A 1 5 ? 9.928 16.547 15.971 1.00 23.10 ? 5 DA A "C2'" 1 ATOM 90 C "C1'" . DA A 1 5 ? 8.824 15.850 15.198 1.00 21.22 ? 5 DA A "C1'" 1 ATOM 91 N N9 . DA A 1 5 ? 9.270 15.138 13.989 1.00 19.15 ? 5 DA A N9 1 ATOM 92 C C8 . DA A 1 5 ? 10.292 15.499 13.144 1.00 19.31 ? 5 DA A C8 1 ATOM 93 N N7 . DA A 1 5 ? 10.472 14.668 12.140 1.00 19.99 ? 5 DA A N7 1 ATOM 94 C C5 . DA A 1 5 ? 9.495 13.700 12.332 1.00 20.50 ? 5 DA A C5 1 ATOM 95 C C6 . DA A 1 5 ? 9.132 12.550 11.590 1.00 21.58 ? 5 DA A C6 1 ATOM 96 N N6 . DA A 1 5 ? 9.751 12.152 10.475 1.00 19.17 ? 5 DA A N6 1 ATOM 97 N N1 . DA A 1 5 ? 8.087 11.821 12.038 1.00 22.64 ? 5 DA A N1 1 ATOM 98 C C2 . DA A 1 5 ? 7.469 12.211 13.162 1.00 23.09 ? 5 DA A C2 1 ATOM 99 N N3 . DA A 1 5 ? 7.715 13.267 13.942 1.00 19.56 ? 5 DA A N3 1 ATOM 100 C C4 . DA A 1 5 ? 8.721 14.001 13.444 1.00 18.70 ? 5 DA A C4 1 ATOM 101 P P . DT A 1 6 ? 9.365 17.967 19.062 1.00 31.16 ? 6 DT A P 1 ATOM 102 O OP1 . DT A 1 6 ? 8.283 18.677 19.843 1.00 37.62 ? 6 DT A OP1 1 ATOM 103 O OP2 . DT A 1 6 ? 10.660 18.603 18.842 1.00 31.25 ? 6 DT A OP2 1 ATOM 104 O "O5'" . DT A 1 6 ? 9.715 16.528 19.644 1.00 35.44 ? 6 DT A "O5'" 1 ATOM 105 C "C5'" . DT A 1 6 ? 8.715 15.739 20.259 1.00 32.80 ? 6 DT A "C5'" 1 ATOM 106 C "C4'" . DT A 1 6 ? 8.952 14.273 19.985 1.00 29.14 ? 6 DT A "C4'" 1 ATOM 107 O "O4'" . DT A 1 6 ? 9.042 14.024 18.581 1.00 25.09 ? 6 DT A "O4'" 1 ATOM 108 C "C3'" . DT A 1 6 ? 10.245 13.677 20.522 1.00 31.40 ? 6 DT A "C3'" 1 ATOM 109 O "O3'" . DT A 1 6 ? 10.078 13.117 21.823 1.00 37.85 ? 6 DT A "O3'" 1 ATOM 110 C "C2'" . DT A 1 6 ? 10.443 12.480 19.612 1.00 29.08 ? 6 DT A "C2'" 1 ATOM 111 C "C1'" . DT A 1 6 ? 9.403 12.673 18.512 1.00 22.91 ? 6 DT A "C1'" 1 ATOM 112 N N1 . DT A 1 6 ? 9.949 12.418 17.191 1.00 17.89 ? 6 DT A N1 1 ATOM 113 C C2 . DT A 1 6 ? 9.289 11.501 16.410 1.00 20.75 ? 6 DT A C2 1 ATOM 114 O O2 . DT A 1 6 ? 8.275 10.922 16.776 1.00 20.56 ? 6 DT A O2 1 ATOM 115 N N3 . DT A 1 6 ? 9.857 11.284 15.178 1.00 20.10 ? 6 DT A N3 1 ATOM 116 C C4 . DT A 1 6 ? 11.016 11.858 14.680 1.00 20.98 ? 6 DT A C4 1 ATOM 117 O O4 . DT A 1 6 ? 11.451 11.508 13.579 1.00 19.78 ? 6 DT A O4 1 ATOM 118 C C5 . DT A 1 6 ? 11.649 12.827 15.555 1.00 18.75 ? 6 DT A C5 1 ATOM 119 C C7 . DT A 1 6 ? 12.887 13.530 15.090 1.00 19.06 ? 6 DT A C7 1 ATOM 120 C C6 . DT A 1 6 ? 11.091 13.049 16.751 1.00 18.44 ? 6 DT A C6 1 ATOM 121 O "O5'" . DA B 1 1 ? 6.972 1.561 11.214 1.00 69.10 ? 1 DA B "O5'" 1 ATOM 122 C "C5'" . DA B 1 1 ? 6.937 1.813 12.635 1.00 53.60 ? 1 DA B "C5'" 1 ATOM 123 C "C4'" . DA B 1 1 ? 5.814 2.774 12.945 1.00 49.14 ? 1 DA B "C4'" 1 ATOM 124 O "O4'" . DA B 1 1 ? 6.308 4.077 13.349 1.00 43.63 ? 1 DA B "O4'" 1 ATOM 125 C "C3'" . DA B 1 1 ? 4.869 3.033 11.775 1.00 47.75 ? 1 DA B "C3'" 1 ATOM 126 O "O3'" . DA B 1 1 ? 3.567 3.125 12.369 1.00 56.40 ? 1 DA B "O3'" 1 ATOM 127 C "C2'" . DA B 1 1 ? 5.378 4.345 11.196 1.00 38.75 ? 1 DA B "C2'" 1 ATOM 128 C "C1'" . DA B 1 1 ? 5.917 5.083 12.418 1.00 34.57 ? 1 DA B "C1'" 1 ATOM 129 N N9 . DA B 1 1 ? 7.099 5.899 12.130 1.00 29.11 ? 1 DA B N9 1 ATOM 130 C C8 . DA B 1 1 ? 8.019 5.668 11.141 1.00 25.63 ? 1 DA B C8 1 ATOM 131 N N7 . DA B 1 1 ? 8.991 6.540 11.110 1.00 23.13 ? 1 DA B N7 1 ATOM 132 C C5 . DA B 1 1 ? 8.715 7.384 12.172 1.00 24.79 ? 1 DA B C5 1 ATOM 133 C C6 . DA B 1 1 ? 9.384 8.518 12.675 1.00 21.22 ? 1 DA B C6 1 ATOM 134 N N6 . DA B 1 1 ? 10.503 9.005 12.137 1.00 20.15 ? 1 DA B N6 1 ATOM 135 N N1 . DA B 1 1 ? 8.851 9.139 13.754 1.00 21.07 ? 1 DA B N1 1 ATOM 136 C C2 . DA B 1 1 ? 7.712 8.654 14.272 1.00 23.20 ? 1 DA B C2 1 ATOM 137 N N3 . DA B 1 1 ? 6.964 7.621 13.854 1.00 25.79 ? 1 DA B N3 1 ATOM 138 C C4 . DA B 1 1 ? 7.544 7.009 12.804 1.00 25.27 ? 1 DA B C4 1 ATOM 139 P P . DT B 1 2 ? 2.162 3.061 11.601 1.00 62.28 ? 2 DT B P 1 ATOM 140 O OP1 . DT B 1 2 ? 1.207 2.563 12.638 1.00 59.09 ? 2 DT B OP1 1 ATOM 141 O OP2 . DT B 1 2 ? 2.316 2.366 10.285 1.00 56.35 ? 2 DT B OP2 1 ATOM 142 O "O5'" . DT B 1 2 ? 1.839 4.595 11.289 1.00 53.42 ? 2 DT B "O5'" 1 ATOM 143 C "C5'" . DT B 1 2 ? 1.701 5.583 12.337 1.00 44.05 ? 2 DT B "C5'" 1 ATOM 144 C "C4'" . DT B 1 2 ? 1.759 6.954 11.708 1.00 42.96 ? 2 DT B "C4'" 1 ATOM 145 O "O4'" . DT B 1 2 ? 3.096 7.470 11.847 1.00 38.62 ? 2 DT B "O4'" 1 ATOM 146 C "C3'" . DT B 1 2 ? 1.527 6.960 10.198 1.00 44.42 ? 2 DT B "C3'" 1 ATOM 147 O "O3'" . DT B 1 2 ? 0.150 7.091 9.824 1.00 54.86 ? 2 DT B "O3'" 1 ATOM 148 C "C2'" . DT B 1 2 ? 2.322 8.162 9.722 1.00 40.37 ? 2 DT B "C2'" 1 ATOM 149 C "C1'" . DT B 1 2 ? 3.222 8.513 10.904 1.00 34.88 ? 2 DT B "C1'" 1 ATOM 150 N N1 . DT B 1 2 ? 4.648 8.670 10.541 1.00 28.17 ? 2 DT B N1 1 ATOM 151 C C2 . DT B 1 2 ? 5.325 9.676 11.186 1.00 24.78 ? 2 DT B C2 1 ATOM 152 O O2 . DT B 1 2 ? 4.825 10.330 12.082 1.00 27.49 ? 2 DT B O2 1 ATOM 153 N N3 . DT B 1 2 ? 6.623 9.860 10.771 1.00 21.49 ? 2 DT B N3 1 ATOM 154 C C4 . DT B 1 2 ? 7.273 9.190 9.747 1.00 24.19 ? 2 DT B C4 1 ATOM 155 O O4 . DT B 1 2 ? 8.443 9.491 9.449 1.00 21.11 ? 2 DT B O4 1 ATOM 156 C C5 . DT B 1 2 ? 6.489 8.153 9.098 1.00 23.85 ? 2 DT B C5 1 ATOM 157 C C7 . DT B 1 2 ? 7.118 7.342 8.013 1.00 28.95 ? 2 DT B C7 1 ATOM 158 C C6 . DT B 1 2 ? 5.240 7.938 9.534 1.00 25.20 ? 2 DT B C6 1 ATOM 159 P P . DG B 1 3 ? -0.348 6.760 8.308 1.00 63.74 ? 3 DG B P 1 ATOM 160 O OP1 . DG B 1 3 ? -1.730 6.212 8.435 1.00 70.10 ? 3 DG B OP1 1 ATOM 161 O OP2 . DG B 1 3 ? 0.651 6.084 7.413 1.00 65.48 ? 3 DG B OP2 1 ATOM 162 O "O5'" . DG B 1 3 ? -0.536 8.258 7.800 1.00 66.49 ? 3 DG B "O5'" 1 ATOM 163 C "C5'" . DG B 1 3 ? -1.034 9.221 8.750 1.00 50.76 ? 3 DG B "C5'" 1 ATOM 164 C "C4'" . DG B 1 3 ? -0.941 10.623 8.207 1.00 31.95 ? 3 DG B "C4'" 1 ATOM 165 O "O4'" . DG B 1 3 ? 0.326 10.852 7.592 1.00 27.54 ? 3 DG B "O4'" 1 ATOM 166 C "C3'" . DG B 1 3 ? -1.983 10.957 7.154 1.00 28.50 ? 3 DG B "C3'" 1 ATOM 167 O "O3'" . DG B 1 3 ? -2.851 11.710 8.000 1.00 30.12 ? 3 DG B "O3'" 1 ATOM 168 C "C2'" . DG B 1 3 ? -1.204 11.723 6.082 1.00 26.49 ? 3 DG B "C2'" 1 ATOM 169 C "C1'" . DG B 1 3 ? 0.153 11.943 6.734 1.00 24.06 ? 3 DG B "C1'" 1 ATOM 170 N N9 . DG B 1 3 ? 1.325 11.990 5.876 1.00 19.94 ? 3 DG B N9 1 ATOM 171 C C8 . DG B 1 3 ? 1.700 11.084 4.924 1.00 19.66 ? 3 DG B C8 1 ATOM 172 N N7 . DG B 1 3 ? 2.871 11.341 4.415 1.00 20.76 ? 3 DG B N7 1 ATOM 173 C C5 . DG B 1 3 ? 3.334 12.422 5.152 1.00 18.13 ? 3 DG B C5 1 ATOM 174 C C6 . DG B 1 3 ? 4.547 13.155 5.053 1.00 19.68 ? 3 DG B C6 1 ATOM 175 O O6 . DG B 1 3 ? 5.516 12.954 4.308 1.00 18.98 ? 3 DG B O6 1 ATOM 176 N N1 . DG B 1 3 ? 4.603 14.172 5.998 1.00 19.18 ? 3 DG B N1 1 ATOM 177 C C2 . DG B 1 3 ? 3.618 14.460 6.901 1.00 18.67 ? 3 DG B C2 1 ATOM 178 N N2 . DG B 1 3 ? 3.877 15.446 7.766 1.00 19.54 ? 3 DG B N2 1 ATOM 179 N N3 . DG B 1 3 ? 2.470 13.815 6.970 1.00 19.22 ? 3 DG B N3 1 ATOM 180 C C4 . DG B 1 3 ? 2.407 12.804 6.085 1.00 18.36 ? 3 DG B C4 1 ATOM 181 P P . DC B 1 4 ? -4.051 12.569 7.528 1.00 34.95 ? 4 DC B P 1 ATOM 182 O OP1 . DC B 1 4 ? -4.613 12.772 8.884 1.00 40.22 ? 4 DC B OP1 1 ATOM 183 O OP2 . DC B 1 4 ? -4.831 12.029 6.400 1.00 33.35 ? 4 DC B OP2 1 ATOM 184 O "O5'" . DC B 1 4 ? -3.469 13.948 6.964 1.00 36.44 ? 4 DC B "O5'" 1 ATOM 185 C "C5'" . DC B 1 4 ? -2.797 14.883 7.816 1.00 28.53 ? 4 DC B "C5'" 1 ATOM 186 C "C4'" . DC B 1 4 ? -2.166 15.956 6.964 1.00 26.56 ? 4 DC B "C4'" 1 ATOM 187 O "O4'" . DC B 1 4 ? -0.974 15.416 6.352 1.00 24.06 ? 4 DC B "O4'" 1 ATOM 188 C "C3'" . DC B 1 4 ? -3.068 16.397 5.803 1.00 25.31 ? 4 DC B "C3'" 1 ATOM 189 O "O3'" . DC B 1 4 ? -3.475 17.754 5.946 1.00 23.33 ? 4 DC B "O3'" 1 ATOM 190 C "C2'" . DC B 1 4 ? -2.256 16.088 4.559 1.00 25.47 ? 4 DC B "C2'" 1 ATOM 191 C "C1'" . DC B 1 4 ? -0.851 16.085 5.124 1.00 24.31 ? 4 DC B "C1'" 1 ATOM 192 N N1 . DC B 1 4 ? 0.188 15.424 4.323 1.00 19.06 ? 4 DC B N1 1 ATOM 193 C C2 . DC B 1 4 ? 1.467 15.978 4.354 1.00 21.51 ? 4 DC B C2 1 ATOM 194 O O2 . DC B 1 4 ? 1.674 16.959 5.078 1.00 19.42 ? 4 DC B O2 1 ATOM 195 N N3 . DC B 1 4 ? 2.448 15.430 3.600 1.00 20.77 ? 4 DC B N3 1 ATOM 196 C C4 . DC B 1 4 ? 2.190 14.367 2.835 1.00 19.20 ? 4 DC B C4 1 ATOM 197 N N4 . DC B 1 4 ? 3.197 13.878 2.092 1.00 18.51 ? 4 DC B N4 1 ATOM 198 C C5 . DC B 1 4 ? 0.915 13.735 2.838 1.00 19.18 ? 4 DC B C5 1 ATOM 199 C C6 . DC B 1 4 ? -0.059 14.306 3.578 1.00 18.75 ? 4 DC B C6 1 ATOM 200 P P . DA B 1 5 ? -4.899 18.124 6.661 1.00 22.04 ? 5 DA B P 1 ATOM 201 O OP1 . DA B 1 5 ? -4.729 17.724 8.064 1.00 27.15 ? 5 DA B OP1 1 ATOM 202 O OP2 . DA B 1 5 ? -5.969 17.539 5.776 1.00 24.85 ? 5 DA B OP2 1 ATOM 203 O "O5'" . DA B 1 5 ? -4.782 19.681 6.388 1.00 23.01 ? 5 DA B "O5'" 1 ATOM 204 C "C5'" . DA B 1 5 ? -3.732 20.459 7.026 1.00 23.74 ? 5 DA B "C5'" 1 ATOM 205 C "C4'" . DA B 1 5 ? -3.468 21.720 6.230 1.00 23.08 ? 5 DA B "C4'" 1 ATOM 206 O "O4'" . DA B 1 5 ? -2.710 21.380 5.055 1.00 22.14 ? 5 DA B "O4'" 1 ATOM 207 C "C3'" . DA B 1 5 ? -4.721 22.408 5.704 1.00 25.43 ? 5 DA B "C3'" 1 ATOM 208 O "O3'" . DA B 1 5 ? -4.472 23.812 5.773 1.00 25.16 ? 5 DA B "O3'" 1 ATOM 209 C "C2'" . DA B 1 5 ? -4.812 21.902 4.272 1.00 22.49 ? 5 DA B "C2'" 1 ATOM 210 C "C1'" . DA B 1 5 ? -3.359 21.809 3.900 1.00 19.86 ? 5 DA B "C1'" 1 ATOM 211 N N9 . DA B 1 5 ? -3.009 20.878 2.830 1.00 22.06 ? 5 DA B N9 1 ATOM 212 C C8 . DA B 1 5 ? -3.549 19.655 2.508 1.00 19.87 ? 5 DA B C8 1 ATOM 213 N N7 . DA B 1 5 ? -2.927 19.047 1.523 1.00 22.38 ? 5 DA B N7 1 ATOM 214 C C5 . DA B 1 5 ? -1.929 19.944 1.153 1.00 20.98 ? 5 DA B C5 1 ATOM 215 C C6 . DA B 1 5 ? -0.927 19.899 0.162 1.00 17.85 ? 5 DA B C6 1 ATOM 216 N N6 . DA B 1 5 ? -0.806 18.919 -0.735 1.00 20.04 ? 5 DA B N6 1 ATOM 217 N N1 . DA B 1 5 ? -0.057 20.927 0.104 1.00 17.87 ? 5 DA B N1 1 ATOM 218 C C2 . DA B 1 5 ? -0.192 21.930 0.973 1.00 18.24 ? 5 DA B C2 1 ATOM 219 N N3 . DA B 1 5 ? -1.062 22.071 1.969 1.00 19.01 ? 5 DA B N3 1 ATOM 220 C C4 . DA B 1 5 ? -1.934 21.048 1.985 1.00 21.32 ? 5 DA B C4 1 ATOM 221 P P . DT B 1 6 ? -5.622 24.885 5.648 1.00 21.84 ? 6 DT B P 1 ATOM 222 O OP1 . DT B 1 6 ? -5.742 25.374 7.015 1.00 21.34 ? 6 DT B OP1 1 ATOM 223 O OP2 . DT B 1 6 ? -6.769 24.384 4.881 1.00 24.48 ? 6 DT B OP2 1 ATOM 224 O "O5'" . DT B 1 6 ? -4.850 26.005 4.799 1.00 22.48 ? 6 DT B "O5'" 1 ATOM 225 C "C5'" . DT B 1 6 ? -3.639 26.659 5.293 1.00 23.29 ? 6 DT B "C5'" 1 ATOM 226 C "C4'" . DT B 1 6 ? -2.974 27.397 4.152 1.00 22.11 ? 6 DT B "C4'" 1 ATOM 227 O "O4'" . DT B 1 6 ? -2.581 26.400 3.185 1.00 21.61 ? 6 DT B "O4'" 1 ATOM 228 C "C3'" . DT B 1 6 ? -3.926 28.334 3.402 1.00 21.60 ? 6 DT B "C3'" 1 ATOM 229 O "O3'" . DT B 1 6 ? -3.268 29.564 3.073 1.00 23.22 ? 6 DT B "O3'" 1 ATOM 230 C "C2'" . DT B 1 6 ? -4.340 27.517 2.190 1.00 19.91 ? 6 DT B "C2'" 1 ATOM 231 C "C1'" . DT B 1 6 ? -3.080 26.745 1.917 1.00 20.02 ? 6 DT B "C1'" 1 ATOM 232 N N1 . DT B 1 6 ? -3.238 25.485 1.143 1.00 20.77 ? 6 DT B N1 1 ATOM 233 C C2 . DT B 1 6 ? -2.206 25.137 0.300 1.00 21.52 ? 6 DT B C2 1 ATOM 234 O O2 . DT B 1 6 ? -1.201 25.834 0.143 1.00 22.32 ? 6 DT B O2 1 ATOM 235 N N3 . DT B 1 6 ? -2.392 23.945 -0.366 1.00 18.34 ? 6 DT B N3 1 ATOM 236 C C4 . DT B 1 6 ? -3.467 23.083 -0.260 1.00 19.85 ? 6 DT B C4 1 ATOM 237 O O4 . DT B 1 6 ? -3.495 22.057 -0.933 1.00 21.68 ? 6 DT B O4 1 ATOM 238 C C5 . DT B 1 6 ? -4.495 23.488 0.676 1.00 20.46 ? 6 DT B C5 1 ATOM 239 C C7 . DT B 1 6 ? -5.701 22.618 0.849 1.00 15.70 ? 6 DT B C7 1 ATOM 240 C C6 . DT B 1 6 ? -4.332 24.656 1.321 1.00 19.57 ? 6 DT B C6 1 HETATM 241 RU RU . 0TN C 2 . ? 4.360 23.241 4.493 1.00 14.99 ? 101 0TN A RU 1 HETATM 242 C C1 . 0TN C 2 . ? 2.869 21.126 3.751 1.00 19.36 ? 101 0TN A C1 1 HETATM 243 N N1 . 0TN C 2 . ? 4.942 21.901 3.238 1.00 17.81 ? 101 0TN A N1 1 HETATM 244 C C2 . 0TN C 2 . ? 1.694 22.236 5.416 1.00 18.08 ? 101 0TN A C2 1 HETATM 245 N N2 . 0TN C 2 . ? 2.879 22.152 4.739 1.00 18.72 ? 101 0TN A N2 1 HETATM 246 C C3 . 0TN C 2 . ? 0.636 21.347 5.192 1.00 19.34 ? 101 0TN A C3 1 HETATM 247 N N3 . 0TN C 2 . ? 0.828 18.318 2.341 1.00 19.49 ? 101 0TN A N3 1 HETATM 248 C C4 . 0TN C 2 . ? 0.647 20.288 4.290 1.00 18.16 ? 101 0TN A C4 1 HETATM 249 N N4 . 0TN C 2 . ? 3.130 18.045 0.797 1.00 21.09 ? 101 0TN A N4 1 HETATM 250 C C5 . 0TN C 2 . ? 1.792 20.195 3.522 1.00 19.27 ? 101 0TN A C5 1 HETATM 251 N N5 . 0TN C 2 . ? 3.783 24.505 5.748 1.00 18.31 ? 101 0TN A N5 1 HETATM 252 C C6 . 0TN C 2 . ? 1.887 19.176 2.541 1.00 20.81 ? 101 0TN A C6 1 HETATM 253 C C7 . 0TN C 2 . ? 3.065 19.037 1.762 1.00 19.29 ? 101 0TN A C7 1 HETATM 254 C C8 . 0TN C 2 . ? 4.118 19.929 1.990 1.00 19.19 ? 101 0TN A C8 1 HETATM 255 N N8 . 0TN C 2 . ? 5.109 22.362 6.025 1.00 18.54 ? 101 0TN A N8 1 HETATM 256 C C9 . 0TN C 2 . ? 5.306 19.814 1.248 1.00 20.76 ? 101 0TN A C9 1 HETATM 257 N N9 . 0TN C 2 . ? 5.862 24.309 4.176 1.00 17.36 ? 101 0TN A N9 1 HETATM 258 C C10 . 0TN C 2 . ? 4.028 20.946 2.989 1.00 17.39 ? 101 0TN A C10 1 HETATM 259 C C11 . 0TN C 2 . ? 6.292 20.794 1.549 1.00 18.94 ? 101 0TN A C11 1 HETATM 260 C C12 . 0TN C 2 . ? 6.066 21.770 2.526 1.00 16.87 ? 101 0TN A C12 1 HETATM 261 N N12 . 0TN C 2 . ? 3.654 24.155 2.986 1.00 17.09 ? 101 0TN A N12 1 HETATM 262 C C13 . 0TN C 2 . ? 2.084 17.222 0.614 1.00 21.05 ? 101 0TN A C13 1 HETATM 263 C C14 . 0TN C 2 . ? 2.156 16.203 -0.361 1.00 25.06 ? 101 0TN A C14 1 HETATM 264 C C15 . 0TN C 2 . ? 0.914 17.351 1.385 1.00 21.61 ? 101 0TN A C15 1 HETATM 265 C C16 . 0TN C 2 . ? -0.174 16.479 1.193 1.00 21.91 ? 101 0TN A C16 1 HETATM 266 C C17 . 0TN C 2 . ? -0.090 15.484 0.220 1.00 23.88 ? 101 0TN A C17 1 HETATM 267 C C18 . 0TN C 2 . ? 1.080 15.327 -0.525 1.00 23.65 ? 101 0TN A C18 1 HETATM 268 C C19 . 0TN C 2 . ? 4.155 24.244 7.051 1.00 17.02 ? 101 0TN A C19 1 HETATM 269 C C20 . 0TN C 2 . ? 3.013 25.620 5.618 1.00 18.43 ? 101 0TN A C20 1 HETATM 270 C C21 . 0TN C 2 . ? 2.714 26.466 6.713 1.00 18.33 ? 101 0TN A C21 1 HETATM 271 C C22 . 0TN C 2 . ? 3.873 25.086 8.201 1.00 18.47 ? 101 0TN A C22 1 HETATM 272 C C23 . 0TN C 2 . ? 4.365 24.759 9.479 1.00 16.95 ? 101 0TN A C23 1 HETATM 273 C C24 . 0TN C 2 . ? 5.120 23.544 9.548 1.00 16.98 ? 101 0TN A C24 1 HETATM 274 C C25 . 0TN C 2 . ? 5.422 22.776 8.421 1.00 17.28 ? 101 0TN A C25 1 HETATM 275 C C26 . 0TN C 2 . ? 4.908 23.100 7.185 1.00 17.45 ? 101 0TN A C26 1 HETATM 276 C C27 . 0TN C 2 . ? 6.413 20.822 7.304 1.00 18.41 ? 101 0TN A C27 1 HETATM 277 C C28 . 0TN C 2 . ? 5.940 21.263 6.095 1.00 16.76 ? 101 0TN A C28 1 HETATM 278 C C29 . 0TN C 2 . ? 5.800 25.100 3.019 1.00 15.82 ? 101 0TN A C29 1 HETATM 279 C C30 . 0TN C 2 . ? 7.103 24.339 4.782 1.00 17.40 ? 101 0TN A C30 1 HETATM 280 C C31 . 0TN C 2 . ? 8.142 25.171 4.312 1.00 18.93 ? 101 0TN A C31 1 HETATM 281 C C32 . 0TN C 2 . ? 6.814 25.957 2.521 1.00 18.39 ? 101 0TN A C32 1 HETATM 282 C C33 . 0TN C 2 . ? 6.619 26.767 1.383 1.00 18.35 ? 101 0TN A C33 1 HETATM 283 C C34 . 0TN C 2 . ? 5.360 26.698 0.784 1.00 17.90 ? 101 0TN A C34 1 HETATM 284 C C35 . 0TN C 2 . ? 4.328 25.888 1.293 1.00 16.38 ? 101 0TN A C35 1 HETATM 285 C C36 . 0TN C 2 . ? 4.578 25.040 2.392 1.00 16.85 ? 101 0TN A C36 1 HETATM 286 C C37 . 0TN C 2 . ? 2.185 24.965 1.235 1.00 15.09 ? 101 0TN A C37 1 HETATM 287 C C38 . 0TN C 2 . ? 2.469 24.160 2.358 1.00 16.50 ? 101 0TN A C38 1 HETATM 288 C C41 . 0TN C 2 . ? 3.119 26.220 8.028 1.00 18.03 ? 101 0TN A C41 1 HETATM 289 C C42 . 0TN C 2 . ? 6.128 21.568 8.487 1.00 18.29 ? 101 0TN A C42 1 HETATM 290 C C43 . 0TN C 2 . ? 8.065 26.001 3.181 1.00 18.14 ? 101 0TN A C43 1 HETATM 291 C C44 . 0TN C 2 . ? 3.111 25.809 0.650 1.00 14.33 ? 101 0TN A C44 1 HETATM 292 RU RU . 0TN D 2 . ? 3.090 15.200 13.473 1.00 16.66 ? 101 0TN B RU 1 HETATM 293 C C1 . 0TN D 2 . ? 3.593 13.581 11.172 1.00 17.08 ? 101 0TN B C1 1 HETATM 294 N N1 . 0TN D 2 . ? 4.769 15.279 12.449 1.00 17.70 ? 101 0TN B N1 1 HETATM 295 C C2 . 0TN D 2 . ? 1.313 12.946 11.795 1.00 21.95 ? 101 0TN B C2 1 HETATM 296 N N2 . 0TN D 2 . ? 2.370 13.726 11.882 1.00 19.14 ? 101 0TN B N2 1 HETATM 297 C C3 . 0TN D 2 . ? 1.363 12.053 10.777 1.00 22.46 ? 101 0TN B C3 1 HETATM 298 N N3 . 0TN D 2 . ? 4.670 11.472 8.286 1.00 18.41 ? 101 0TN B N3 1 HETATM 299 C C4 . 0TN D 2 . ? 2.471 11.923 9.984 1.00 20.70 ? 101 0TN B C4 1 HETATM 300 N N4 . 0TN D 2 . ? 6.919 13.000 8.603 1.00 19.24 ? 101 0TN B N4 1 HETATM 301 C C5 . 0TN D 2 . ? 3.614 12.647 10.141 1.00 18.29 ? 101 0TN B C5 1 HETATM 302 N N5 . 0TN D 2 . ? 3.907 13.755 14.503 1.00 21.56 ? 101 0TN B N5 1 HETATM 303 C C6 . 0TN D 2 . ? 4.722 12.417 9.277 1.00 18.31 ? 101 0TN B C6 1 HETATM 304 C C7 . 0TN D 2 . ? 5.892 13.215 9.455 1.00 17.63 ? 101 0TN B C7 1 HETATM 305 C C8 . 0TN D 2 . ? 5.910 14.228 10.481 1.00 16.54 ? 101 0TN B C8 1 HETATM 306 N N8 . 0TN D 2 . ? 3.745 16.385 14.838 1.00 19.11 ? 101 0TN B N8 1 HETATM 307 C C9 . 0TN D 2 . ? 7.053 15.015 10.706 1.00 15.25 ? 101 0TN B C9 1 HETATM 308 N N9 . 0TN D 2 . ? 2.258 16.658 12.506 1.00 18.28 ? 101 0TN B N9 1 HETATM 309 C C10 . 0TN D 2 . ? 4.763 14.368 11.370 1.00 17.23 ? 101 0TN B C10 1 HETATM 310 C C11 . 0TN D 2 . ? 7.016 15.943 11.742 1.00 14.84 ? 101 0TN B C11 1 HETATM 311 C C12 . 0TN D 2 . ? 5.870 16.075 12.539 1.00 17.31 ? 101 0TN B C12 1 HETATM 312 N N12 . 0TN D 2 . ? 1.383 15.106 14.432 1.00 20.33 ? 101 0TN B N12 1 HETATM 313 C C13 . 0TN D 2 . ? 6.842 12.057 7.598 1.00 21.11 ? 101 0TN B C13 1 HETATM 314 C C14 . 0TN D 2 . ? 7.923 11.803 6.732 1.00 22.80 ? 101 0TN B C14 1 HETATM 315 C C15 . 0TN D 2 . ? 5.696 11.266 7.455 1.00 20.02 ? 101 0TN B C15 1 HETATM 316 C C16 . 0TN D 2 . ? 5.630 10.280 6.445 1.00 20.59 ? 101 0TN B C16 1 HETATM 317 C C17 . 0TN D 2 . ? 6.686 10.041 5.585 1.00 20.42 ? 101 0TN B C17 1 HETATM 318 C C18 . 0TN D 2 . ? 7.824 10.801 5.731 1.00 23.04 ? 101 0TN B C18 1 HETATM 319 C C19 . 0TN D 2 . ? 4.470 14.242 15.646 1.00 20.50 ? 101 0TN B C19 1 HETATM 320 C C20 . 0TN D 2 . ? 3.954 12.410 14.372 1.00 20.93 ? 101 0TN B C20 1 HETATM 321 C C21 . 0TN D 2 . ? 4.572 11.546 15.275 1.00 24.24 ? 101 0TN B C21 1 HETATM 322 C C22 . 0TN D 2 . ? 5.132 13.446 16.587 1.00 22.38 ? 101 0TN B C22 1 HETATM 323 C C23 . 0TN D 2 . ? 5.761 13.994 17.698 1.00 21.57 ? 101 0TN B C23 1 HETATM 324 C C24 . 0TN D 2 . ? 5.701 15.358 17.819 1.00 22.18 ? 101 0TN B C24 1 HETATM 325 C C25 . 0TN D 2 . ? 5.083 16.183 16.868 1.00 21.89 ? 101 0TN B C25 1 HETATM 326 C C26 . 0TN D 2 . ? 4.425 15.646 15.769 1.00 20.09 ? 101 0TN B C26 1 HETATM 327 C C27 . 0TN D 2 . ? 4.393 18.315 16.089 1.00 19.33 ? 101 0TN B C27 1 HETATM 328 C C28 . 0TN D 2 . ? 3.806 17.693 14.981 1.00 19.42 ? 101 0TN B C28 1 HETATM 329 C C29 . 0TN D 2 . ? 0.937 16.862 12.973 1.00 19.73 ? 101 0TN B C29 1 HETATM 330 C C30 . 0TN D 2 . ? 2.706 17.617 11.582 1.00 20.71 ? 101 0TN B C30 1 HETATM 331 C C31 . 0TN D 2 . ? 1.891 18.672 11.093 1.00 19.48 ? 101 0TN B C31 1 HETATM 332 C C32 . 0TN D 2 . ? 0.069 17.930 12.529 1.00 19.73 ? 101 0TN B C32 1 HETATM 333 C C33 . 0TN D 2 . ? -1.241 18.092 13.004 1.00 20.13 ? 101 0TN B C33 1 HETATM 334 C C34 . 0TN D 2 . ? -1.710 17.196 14.004 1.00 21.33 ? 101 0TN B C34 1 HETATM 335 C C35 . 0TN D 2 . ? -0.849 16.159 14.485 1.00 21.82 ? 101 0TN B C35 1 HETATM 336 C C36 . 0TN D 2 . ? 0.460 16.002 13.970 1.00 19.01 ? 101 0TN B C36 1 HETATM 337 C C37 . 0TN D 2 . ? -0.414 14.275 15.886 1.00 21.42 ? 101 0TN B C37 1 HETATM 338 C C38 . 0TN D 2 . ? 0.906 14.207 15.296 1.00 21.14 ? 101 0TN B C38 1 HETATM 339 C C41 . 0TN D 2 . ? 5.196 12.071 16.424 1.00 24.99 ? 101 0TN B C41 1 HETATM 340 C C42 . 0TN D 2 . ? 5.044 17.564 17.072 1.00 21.16 ? 101 0TN B C42 1 HETATM 341 C C43 . 0TN D 2 . ? 0.571 18.846 11.581 1.00 22.67 ? 101 0TN B C43 1 HETATM 342 C C44 . 0TN D 2 . ? -1.307 15.240 15.467 1.00 19.63 ? 101 0TN B C44 1 HETATM 343 O O . HOH E 3 . ? 5.124 18.407 9.412 1.00 18.93 ? 201 HOH A O 1 HETATM 344 O O . HOH E 3 . ? 3.422 19.671 7.866 1.00 20.96 ? 202 HOH A O 1 HETATM 345 O O . HOH E 3 . ? 2.715 22.537 11.704 1.00 18.39 ? 203 HOH A O 1 HETATM 346 O O . HOH E 3 . ? 8.377 24.111 7.908 1.00 21.89 ? 204 HOH A O 1 HETATM 347 O O . HOH E 3 . ? 5.967 17.298 20.994 1.00 24.35 ? 205 HOH A O 1 HETATM 348 O O . HOH E 3 . ? 1.988 21.842 9.084 1.00 20.77 ? 206 HOH A O 1 HETATM 349 O O . HOH E 3 . ? 6.034 19.549 11.885 1.00 20.98 ? 207 HOH A O 1 HETATM 350 O O . HOH E 3 . ? 3.686 15.568 -5.986 1.00 23.62 ? 208 HOH A O 1 HETATM 351 O O . HOH E 3 . ? 8.673 23.911 10.308 1.00 26.20 ? 209 HOH A O 1 HETATM 352 O O . HOH E 3 . ? 11.460 13.378 8.135 1.00 35.82 ? 210 HOH A O 1 HETATM 353 O O . HOH E 3 . ? 3.315 26.304 -2.674 1.00 28.43 ? 211 HOH A O 1 HETATM 354 O O . HOH E 3 . ? 14.217 19.745 4.312 1.00 29.44 ? 212 HOH A O 1 HETATM 355 O O . HOH E 3 . ? 7.802 21.645 11.951 1.00 27.84 ? 213 HOH A O 1 HETATM 356 O O . HOH E 3 . ? 3.875 20.548 13.591 1.00 29.48 ? 214 HOH A O 1 HETATM 357 O O . HOH E 3 . ? 13.297 25.057 -1.633 1.00 39.86 ? 215 HOH A O 1 HETATM 358 O O . HOH E 3 . ? 1.244 17.280 -4.492 1.00 30.54 ? 216 HOH A O 1 HETATM 359 O O . HOH E 3 . ? 7.778 19.955 -4.242 1.00 28.29 ? 217 HOH A O 1 HETATM 360 O O . HOH E 3 . ? 7.997 18.631 -1.748 1.00 30.34 ? 218 HOH A O 1 HETATM 361 O O . HOH E 3 . ? 10.129 19.971 -0.755 1.00 32.40 ? 219 HOH A O 1 HETATM 362 O O . HOH E 3 . ? 6.664 13.224 0.417 0.50 18.05 ? 220 HOH A O 1 HETATM 363 O O . HOH E 3 . ? 11.116 24.970 6.823 1.00 31.27 ? 221 HOH A O 1 HETATM 364 O O . HOH E 3 . ? 11.431 25.892 2.511 1.00 41.39 ? 222 HOH A O 1 HETATM 365 O O . HOH F 3 . ? 10.237 8.783 7.910 1.00 23.75 ? 201 HOH B O 1 HETATM 366 O O . HOH F 3 . ? -1.098 15.616 10.688 1.00 23.71 ? 202 HOH B O 1 HETATM 367 O O . HOH F 3 . ? -1.346 9.382 11.515 1.00 34.35 ? 203 HOH B O 1 HETATM 368 O O . HOH F 3 . ? 1.085 15.447 9.142 1.00 19.61 ? 204 HOH B O 1 HETATM 369 O O . HOH F 3 . ? -0.570 24.130 3.601 1.00 18.17 ? 205 HOH B O 1 HETATM 370 O O . HOH F 3 . ? -0.659 19.619 8.317 1.00 29.17 ? 206 HOH B O 1 HETATM 371 O O . HOH F 3 . ? -3.982 16.500 0.809 1.00 26.87 ? 207 HOH B O 1 HETATM 372 O O . HOH F 3 . ? 1.107 17.913 7.722 1.00 19.44 ? 208 HOH B O 1 HETATM 373 O O . HOH F 3 . ? -0.320 25.007 6.431 1.00 31.43 ? 209 HOH B O 1 HETATM 374 O O . HOH F 3 . ? -2.649 16.806 -1.938 1.00 25.96 ? 210 HOH B O 1 HETATM 375 O O . HOH F 3 . ? 11.142 7.303 10.021 1.00 36.65 ? 211 HOH B O 1 HETATM 376 O O . HOH F 3 . ? -0.377 28.603 6.814 1.00 31.11 ? 212 HOH B O 1 HETATM 377 O O . HOH F 3 . ? 8.875 9.626 2.544 1.00 37.08 ? 213 HOH B O 1 HETATM 378 O O . HOH F 3 . ? 9.794 2.383 13.023 1.00 30.86 ? 214 HOH B O 1 HETATM 379 O O . HOH F 3 . ? -0.443 28.101 -1.508 1.00 32.99 ? 215 HOH B O 1 HETATM 380 O O . HOH F 3 . ? -2.992 17.947 9.752 1.00 32.11 ? 216 HOH B O 1 HETATM 381 O O . HOH F 3 . ? 5.940 11.227 2.223 1.00 33.51 ? 217 HOH B O 1 HETATM 382 O O . HOH F 3 . ? 0.207 23.609 8.403 1.00 36.51 ? 218 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DT 2 2 2 DT DT B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DT 6 6 6 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0TN 1 101 1 0TN KPD A . D 2 0TN 1 101 1 0TN RKP B . E 3 HOH 1 201 1 HOH HOH A . E 3 HOH 2 202 2 HOH HOH A . E 3 HOH 3 203 3 HOH HOH A . E 3 HOH 4 204 4 HOH HOH A . E 3 HOH 5 205 6 HOH HOH A . E 3 HOH 6 206 7 HOH HOH A . E 3 HOH 7 207 10 HOH HOH A . E 3 HOH 8 208 13 HOH HOH A . E 3 HOH 9 209 16 HOH HOH A . E 3 HOH 10 210 17 HOH HOH A . E 3 HOH 11 211 19 HOH HOH A . E 3 HOH 12 212 20 HOH HOH A . E 3 HOH 13 213 22 HOH HOH A . E 3 HOH 14 214 24 HOH HOH A . E 3 HOH 15 215 28 HOH HOH A . E 3 HOH 16 216 29 HOH HOH A . E 3 HOH 17 217 31 HOH HOH A . E 3 HOH 18 218 35 HOH HOH A . E 3 HOH 19 219 36 HOH HOH A . E 3 HOH 20 220 37 HOH HOH A . E 3 HOH 21 221 38 HOH HOH A . E 3 HOH 22 222 40 HOH HOH A . F 3 HOH 1 201 23 HOH HOH B . F 3 HOH 2 202 5 HOH HOH B . F 3 HOH 3 203 8 HOH HOH B . F 3 HOH 4 204 9 HOH HOH B . F 3 HOH 5 205 11 HOH HOH B . F 3 HOH 6 206 12 HOH HOH B . F 3 HOH 7 207 14 HOH HOH B . F 3 HOH 8 208 15 HOH HOH B . F 3 HOH 9 209 18 HOH HOH B . F 3 HOH 10 210 21 HOH HOH B . F 3 HOH 11 211 25 HOH HOH B . F 3 HOH 12 212 26 HOH HOH B . F 3 HOH 13 213 27 HOH HOH B . F 3 HOH 14 214 30 HOH HOH B . F 3 HOH 15 215 32 HOH HOH B . F 3 HOH 16 216 33 HOH HOH B . F 3 HOH 17 217 34 HOH HOH B . F 3 HOH 18 218 39 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-20 2 'Structure model' 1 1 2013-04-24 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 SHELXC/D/E 'model building' . ? 2 REFMAC refinement 5.6.0117 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 SHELXC/D/E phasing . ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A DG 3 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 117.33 110.50 6.83 1.10 Y 2 1 "C1'" A DT 6 ? ? "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? 103.46 110.10 -6.64 1.00 N # _ndb_struct_conf_na.entry_id 4E87 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 6 1_555 0.099 -0.151 0.097 -9.276 0.830 1.158 1 A_DA1:DT6_B A 1 ? B 6 ? 20 1 1 A DT 2 1_555 B DA 5 1_555 -0.026 -0.100 0.080 14.568 9.307 3.094 2 A_DT2:DA5_B A 2 ? B 5 ? 20 1 1 A DG 3 1_555 B DC 4 1_555 -0.392 -0.088 -0.291 -1.341 9.876 -0.512 3 A_DG3:DC4_B A 3 ? B 4 ? 19 1 1 A DC 4 1_555 B DG 3 1_555 0.377 -0.190 -0.322 16.778 2.099 -1.101 4 A_DC4:DG3_B A 4 ? B 3 ? 19 1 1 A DA 5 1_555 B DT 2 1_555 0.179 -0.103 -0.028 -11.617 16.125 7.960 5 A_DA5:DT2_B A 5 ? B 2 ? 20 1 1 A DT 6 1_555 B DA 1 1_555 -0.140 -0.125 -0.427 12.854 8.046 3.817 6 A_DT6:DA1_B A 6 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 6 1_555 A DT 2 1_555 B DA 5 1_555 1.024 0.224 2.869 0.403 3.123 28.757 -0.162 -1.972 2.891 6.265 -0.808 28.926 1 AA_DA1DT2:DA5DT6_BB A 1 ? B 6 ? A 2 ? B 5 ? 1 A DT 2 1_555 B DA 5 1_555 A DG 3 1_555 B DC 4 1_555 0.767 1.921 6.875 12.674 2.835 25.625 2.476 4.723 6.676 5.932 -26.514 28.679 2 AA_DT2DG3:DC4DA5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A DG 3 1_555 B DC 4 1_555 A DC 4 1_555 B DG 3 1_555 -0.208 0.016 2.914 1.499 6.161 22.873 -1.774 0.947 2.802 15.165 -3.690 23.724 3 AA_DG3DC4:DG3DC4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 A DC 4 1_555 B DG 3 1_555 A DA 5 1_555 B DT 2 1_555 -1.758 1.860 6.874 -11.292 5.460 22.232 0.622 -3.446 7.171 12.921 26.723 25.488 4 AA_DC4DA5:DT2DG3_BB A 4 ? B 3 ? A 5 ? B 2 ? 1 A DA 5 1_555 B DT 2 1_555 A DT 6 1_555 B DA 1 1_555 -0.619 0.119 2.819 4.091 6.428 14.574 -3.343 4.559 2.395 23.368 -14.872 16.436 5 AA_DA5DT6:DA1DT2_BB A 5 ? B 2 ? A 6 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Delta-Ru(phen)2(dppz) complex' 0TN 3 water HOH #