0.015699 0.000000 0.000000 0.000000 0.015699 0.000000 0.000000 0.000000 0.006101 0.00000 0.00000 0.00000 Kim, J.H. Kim, S.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 63.700 63.700 163.920 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CD N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 S C N 164 N C N 165 N C N 166 N C N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N C N 211 N N N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N N N 229 S C N 230 N C N 231 N O N 232 N C N 233 N C N 234 N S N 235 N C N 236 N O N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N MG N 249 N N N 250 S C N 251 N C N 252 N O N 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C N 277 N C N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C N 294 N O N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 R C N 308 N O N 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N N Y 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N N N 348 S C N 349 N C N 350 N O N 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C N 358 N O N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N C N 377 N C N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing US Biosci.Rep. 0144-8463 32 455 463 10.1042/BSR20120028 22724525 Crystal structure of xenotropic murine leukaemia virus-related virus (XMRV) ribonuclease H 2012 10.2210/pdb4e89/pdb pdb_00004e89 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-10-22 ADSC QUANTUM 315 Mirrors SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL-17A Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 17304.611 RNase H 3.1.26.4 1 man polymer 112.411 CADMIUM ION 4 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer Ribonulease no no PDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRY AFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA PDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRY AFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n XMRV VP62 sample 373193 Xenotropic MuLV-related virus 562 Escherichia coli 1 4.80 74.40 VAPOR DIFFUSION, SITTING DROP 7.0 0.3M NaOAc, 0.05M CdSO4, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Data collection Database references Derived calculations 1 0 2012-10-17 1 1 2024-03-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2012-03-19 REL REL CD CADMIUM ION MG MAGNESIUM ION CD2 664 2 CD CD 701 A CD2 665 2 CD CD 702 A CD2 666 2 CD CD 703 A CD2 667 2 CD CD 704 A MG2 668 3 MG MG 705 A PRO 507 n 1 PRO 507 A ASP 508 n 2 ASP 508 A LEU 509 n 3 LEU 509 A THR 510 n 4 THR 510 A ASP 511 n 5 ASP 511 A GLN 512 n 6 GLN 512 A PRO 513 n 7 PRO 513 A ILE 514 n 8 ILE 514 A PRO 515 n 9 PRO 515 A ASP 516 n 10 ASP 516 A ALA 517 n 11 ALA 517 A ASP 518 n 12 ASP 518 A TYR 519 n 13 TYR 519 A THR 520 n 14 THR 520 A TRP 521 n 15 TRP 521 A TYR 522 n 16 TYR 522 A THR 523 n 17 THR 523 A ASP 524 n 18 ASP 524 A GLY 525 n 19 GLY 525 A SER 526 n 20 SER 526 A SER 527 n 21 SER 527 A PHE 528 n 22 PHE 528 A LEU 529 n 23 LEU 529 A GLN 530 n 24 GLN 530 A GLU 531 n 25 GLU 531 A GLY 532 n 26 GLY 532 A GLN 533 n 27 GLN 533 A ARG 534 n 28 ARG 534 A ARG 535 n 29 ARG 535 A ALA 536 n 30 ALA 536 A GLY 537 n 31 GLY 537 A ALA 538 n 32 ALA 538 A ALA 539 n 33 ALA 539 A VAL 540 n 34 VAL 540 A THR 541 n 35 THR 541 A THR 542 n 36 THR 542 A GLU 543 n 37 GLU 543 A THR 544 n 38 THR 544 A GLU 545 n 39 GLU 545 A VAL 546 n 40 VAL 546 A ILE 547 n 41 ILE 547 A TRP 548 n 42 TRP 548 A ALA 549 n 43 ALA 549 A ARG 550 n 44 ARG 550 A ALA 551 n 45 ALA 551 A LEU 552 n 46 LEU 552 A PRO 553 n 47 PRO 553 A ALA 554 n 48 ALA 554 A GLY 555 n 49 GLY 555 A THR 556 n 50 THR 556 A SER 557 n 51 SER 557 A ALA 558 n 52 ALA 558 A GLN 559 n 53 GLN 559 A ARG 560 n 54 ARG 560 A ALA 561 n 55 ALA 561 A GLU 562 n 56 GLU 562 A LEU 563 n 57 LEU 563 A ILE 564 n 58 ILE 564 A ALA 565 n 59 ALA 565 A LEU 566 n 60 LEU 566 A THR 567 n 61 THR 567 A GLN 568 n 62 GLN 568 A ALA 569 n 63 ALA 569 A LEU 570 n 64 LEU 570 A LYS 571 n 65 LYS 571 A MET 572 n 66 MET 572 A ALA 573 n 67 ALA 573 A GLU 574 n 68 GLU 574 A GLY 575 n 69 GLY 575 A LYS 576 n 70 LYS 576 A LYS 577 n 71 LYS 577 A LEU 578 n 72 LEU 578 A ASN 579 n 73 ASN 579 A VAL 580 n 74 VAL 580 A TYR 581 n 75 TYR 581 A THR 582 n 76 THR 582 A ASP 583 n 77 ASP 583 A SER 584 n 78 SER 584 A ARG 585 n 79 ARG 585 A TYR 586 n 80 TYR 586 A ALA 587 n 81 ALA 587 A PHE 588 n 82 PHE 588 A ALA 589 n 83 ALA 589 A THR 590 n 84 THR 590 A ALA 591 n 85 ALA 591 A HIS 592 n 86 HIS 592 A VAL 593 n 87 VAL 593 A HIS 594 n 88 HIS 594 A GLY 595 n 89 GLY 595 A GLU 596 n 90 GLU 596 A ILE 597 n 91 ILE 597 A TYR 598 n 92 TYR 598 A ARG 599 n 93 ARG 599 A ARG 600 n 94 ARG 600 A ARG 601 n 95 ARG 601 A GLY 602 n 96 GLY 602 A LEU 603 n 97 LEU 603 A LEU 604 n 98 LEU 604 A THR 605 n 99 THR 605 A SER 606 n 100 SER 606 A GLU 607 n 101 GLU 607 A GLY 608 n 102 GLY 608 A ARG 609 n 103 ARG 609 A GLU 610 n 104 GLU 610 A ILE 611 n 105 ILE 611 A LYS 612 n 106 LYS 612 A ASN 613 n 107 ASN 613 A LYS 614 n 108 LYS 614 A ASN 615 n 109 ASN 615 A GLU 616 n 110 GLU 616 A ILE 617 n 111 ILE 617 A LEU 618 n 112 LEU 618 A ALA 619 n 113 ALA 619 A LEU 620 n 114 LEU 620 A LEU 621 n 115 LEU 621 A LYS 622 n 116 LYS 622 A ALA 623 n 117 ALA 623 A LEU 624 n 118 LEU 624 A PHE 625 n 119 PHE 625 A LEU 626 n 120 LEU 626 A PRO 627 n 121 PRO 627 A LYS 628 n 122 LYS 628 A ARG 629 n 123 ARG 629 A LEU 630 n 124 LEU 630 A SER 631 n 125 SER 631 A ILE 632 n 126 ILE 632 A ILE 633 n 127 ILE 633 A HIS 634 n 128 HIS 634 A CYS 635 n 129 CYS 635 A PRO 636 n 130 PRO 636 A GLY 637 n 131 GLY 637 A HIS 638 n 132 HIS 638 A GLN 639 n 133 GLN 639 A LYS 640 n 134 LYS 640 A GLY 641 n 135 GLY 641 A ASN 642 n 136 ASN 642 A SER 643 n 137 SER 643 A ALA 644 n 138 ALA 644 A GLU 645 n 139 GLU 645 A ALA 646 n 140 ALA 646 A ARG 647 n 141 ARG 647 A GLY 648 n 142 GLY 648 A ASN 649 n 143 ASN 649 A ARG 650 n 144 ARG 650 A MET 651 n 145 MET 651 A ALA 652 n 146 ALA 652 A ASP 653 n 147 ASP 653 A GLN 654 n 148 GLN 654 A ALA 655 n 149 ALA 655 A ALA 656 n 150 ALA 656 A ARG 657 n 151 ARG 657 A GLU 658 n 152 GLU 658 A ALA 659 n 153 ALA 659 A ALA 660 n 154 ALA 660 A MET 661 n 155 MET 661 A LYS 662 n 156 LYS 662 A ALA 663 n 157 ALA 663 A author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric 2230 -8 15670 A ASP 511 A OD2 ASP 5 1_555 A CD 701 B CD CD 1_555 A HIS 592 A NE2 HIS 86 1_555 95.2 A ASP 524 A OD1 ASP 18 1_555 A MG 705 F MG MG 1_555 A GLU 562 A OE2 GLU 56 1_555 81.4 A ASP 524 A OD1 ASP 18 1_555 A MG 705 F MG MG 1_555 A ASP 583 A OD2 ASP 77 1_555 107.0 A GLU 562 A OE2 GLU 56 1_555 A MG 705 F MG MG 1_555 A ASP 583 A OD2 ASP 77 1_555 115.1 A GLU 545 A OE1 GLU 39 1_555 A CD 704 E CD CD 1_555 A GLU 545 A OE2 GLU 39 1_555 62.2 A CYS 635 A SG CYS 129 1_555 A CD 703 D CD CD 1_555 A HIS 638 A ND1 HIS 132 1_555 98.9 A CYS 635 A SG CYS 129 1_555 A CD 703 D CD CD 1_555 A GLU 645 A OE1 GLU 139 1_555 139.0 A HIS 638 A ND1 HIS 132 1_555 A CD 703 D CD CD 1_555 A GLU 645 A OE1 GLU 139 1_555 88.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O TRP 548 A O TRP 42 A N VAL 540 A N VAL 34 A O ARG 535 A O ARG 29 A N PHE 528 A N PHE 22 A N TRP 521 A N TRP 15 A O TYR 581 A O TYR 75 A N LEU 578 A N LEU 72 A O ARG 629 A O ARG 123 1 A CD 701 B CD 1 A ASP 516 -106.24 57.99 1 A GLN 530 -86.48 47.51 1 A GLU 531 74.72 88.25 1 A THR 542 -101.03 -156.44 protein_rep.param protein.top ion.param ion.top 64.4 4.18 0.00 0.00 4.18 0.00 -8.35 BULK SOLVENT MODEL USED 0.260 0.011 0.239 0.239 2.60 45.04 570 11127 11022 5.2 99.7 RANDOM 1631876.06 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 34.1514 0.35 0.42 0.36 5.00 0.52 0.44 2.60 45.04 0 1220 5 0 1215 0.008 1.4 23.5 0.84 1.57 1.50 2.82 2.00 2.07 2.00 3.31 2.50 0.384 0.045 0.328 2.76 73 1721 6 4.1 99.9 47.5 2.6 50 4E89 11127 11092 0 0 1 99.9 2.6 2.74 1 100 data collection ADSC Quantum phasing PHASER refinement CNS 1.1 data reduction MOSFLM data scaling SCALA Crystal Structure of RnaseH from gammaretrovirus 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N A SER 557 A SER 51 HELX_P A ALA 573 A ALA 67 1 1 17 A SER 584 A SER 78 HELX_P A ALA 591 A ALA 85 1 2 8 A HIS 594 A HIS 88 HELX_P A ARG 599 A ARG 93 1 3 6 A ASN 613 A ASN 107 HELX_P A LEU 624 A LEU 118 1 4 12 A CYS 635 A CYS 129 HELX_P A GLN 639 A GLN 133 5 5 5 A SER 643 A SER 137 HELX_P A LYS 662 A LYS 156 1 6 20 metalc 2.265 A ASP 511 A OD2 ASP 5 1_555 A CD 701 B CD CD 1_555 metalc 2.358 A ASP 524 A OD1 ASP 18 1_555 A MG 705 F MG MG 1_555 metalc 2.117 A GLU 545 A OE1 GLU 39 1_555 A CD 704 E CD CD 1_555 metalc 2.180 A GLU 545 A OE2 GLU 39 1_555 A CD 704 E CD CD 1_555 metalc 1.757 A GLU 562 A OE2 GLU 56 1_555 A MG 705 F MG MG 1_555 metalc 1.991 A ASP 583 A OD2 ASP 77 1_555 A MG 705 F MG MG 1_555 metalc 2.084 A HIS 592 A NE2 HIS 86 1_555 A CD 701 B CD CD 1_555 metalc 2.645 A CYS 635 A SG CYS 129 1_555 A CD 702 C CD CD 1_555 metalc 2.479 A CYS 635 A SG CYS 129 1_555 A CD 703 D CD CD 1_555 metalc 2.416 A HIS 638 A ND1 HIS 132 1_555 A CD 703 D CD CD 1_555 metalc 2.408 A GLU 645 A OE1 GLU 139 1_555 A CD 703 D CD CD 1_555 HYDROLASE Rossmann Fold, Hydrolase POL_XMRV6 UNP 1 1164 A1Z651 PDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRY AFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 1164 1320 4E89 507 663 A1Z651 A 1 1 157 5 anti-parallel anti-parallel parallel parallel A VAL 546 A VAL 40 A LEU 552 A LEU 46 A ARG 534 A ARG 28 A THR 541 A THR 35 A TYR 519 A TYR 13 A LEU 529 A LEU 23 A LYS 577 A LYS 71 A THR 582 A THR 76 A ARG 629 A ARG 123 A ILE 633 A ILE 127 BINDING SITE FOR RESIDUE CD A 701 A CD 701 Software 4 BINDING SITE FOR RESIDUE CD A 702 A CD 702 Software 4 BINDING SITE FOR RESIDUE CD A 703 A CD 703 Software 5 BINDING SITE FOR RESIDUE CD A 704 A CD 704 Software 3 BINDING SITE FOR RESIDUE MG A 705 A MG 705 Software 4 A ASP 511 A ASP 5 4 1_555 A ASP 511 A ASP 5 4 7_555 A HIS 592 A HIS 86 4 1_555 A HIS 592 A HIS 86 4 7_555 A HIS 594 A HIS 88 4 7_555 A GLU 596 A GLU 90 4 7_555 A CYS 635 A CYS 129 4 1_555 A CD 703 D CD 4 1_555 A GLU 596 A GLU 90 5 7_555 A CYS 635 A CYS 129 5 1_555 A HIS 638 A HIS 132 5 1_555 A GLU 645 A GLU 139 5 1_555 A CD 702 C CD 5 1_555 A GLU 545 A GLU 39 3 1_555 A ARG 560 A ARG 54 3 5_444 A GLU 616 A GLU 110 3 5_444 A ASP 524 A ASP 18 4 1_555 A GLY 525 A GLY 19 4 1_555 A GLU 562 A GLU 56 4 1_555 A ASP 583 A ASP 77 4 1_555 96 P 43 21 2