0.015699
0.000000
0.000000
0.000000
0.015699
0.000000
0.000000
0.000000
0.006101
0.00000
0.00000
0.00000
Kim, J.H.
Kim, S.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
63.700
63.700
163.920
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
S
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
N
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
S
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
MG
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
O
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
R
C
N
308
N
O
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
N
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
N
358
N
O
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
US
Biosci.Rep.
0144-8463
32
455
463
10.1042/BSR20120028
22724525
Crystal structure of xenotropic murine leukaemia virus-related virus (XMRV) ribonuclease H
2012
10.2210/pdb4e89/pdb
pdb_00004e89
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-10-22
ADSC QUANTUM 315
Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL-17A
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-17A
17304.611
RNase H
3.1.26.4
1
man
polymer
112.411
CADMIUM ION
4
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
Ribonulease
no
no
PDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRY
AFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA
PDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRY
AFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
XMRV
VP62
sample
373193
Xenotropic MuLV-related virus
562
Escherichia coli
1
4.80
74.40
VAPOR DIFFUSION, SITTING DROP
7.0
0.3M NaOAc, 0.05M CdSO4, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2012-10-17
1
1
2024-03-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2012-03-19
REL
REL
CD
CADMIUM ION
MG
MAGNESIUM ION
CD2
664
2
CD
CD
701
A
CD2
665
2
CD
CD
702
A
CD2
666
2
CD
CD
703
A
CD2
667
2
CD
CD
704
A
MG2
668
3
MG
MG
705
A
PRO
507
n
1
PRO
507
A
ASP
508
n
2
ASP
508
A
LEU
509
n
3
LEU
509
A
THR
510
n
4
THR
510
A
ASP
511
n
5
ASP
511
A
GLN
512
n
6
GLN
512
A
PRO
513
n
7
PRO
513
A
ILE
514
n
8
ILE
514
A
PRO
515
n
9
PRO
515
A
ASP
516
n
10
ASP
516
A
ALA
517
n
11
ALA
517
A
ASP
518
n
12
ASP
518
A
TYR
519
n
13
TYR
519
A
THR
520
n
14
THR
520
A
TRP
521
n
15
TRP
521
A
TYR
522
n
16
TYR
522
A
THR
523
n
17
THR
523
A
ASP
524
n
18
ASP
524
A
GLY
525
n
19
GLY
525
A
SER
526
n
20
SER
526
A
SER
527
n
21
SER
527
A
PHE
528
n
22
PHE
528
A
LEU
529
n
23
LEU
529
A
GLN
530
n
24
GLN
530
A
GLU
531
n
25
GLU
531
A
GLY
532
n
26
GLY
532
A
GLN
533
n
27
GLN
533
A
ARG
534
n
28
ARG
534
A
ARG
535
n
29
ARG
535
A
ALA
536
n
30
ALA
536
A
GLY
537
n
31
GLY
537
A
ALA
538
n
32
ALA
538
A
ALA
539
n
33
ALA
539
A
VAL
540
n
34
VAL
540
A
THR
541
n
35
THR
541
A
THR
542
n
36
THR
542
A
GLU
543
n
37
GLU
543
A
THR
544
n
38
THR
544
A
GLU
545
n
39
GLU
545
A
VAL
546
n
40
VAL
546
A
ILE
547
n
41
ILE
547
A
TRP
548
n
42
TRP
548
A
ALA
549
n
43
ALA
549
A
ARG
550
n
44
ARG
550
A
ALA
551
n
45
ALA
551
A
LEU
552
n
46
LEU
552
A
PRO
553
n
47
PRO
553
A
ALA
554
n
48
ALA
554
A
GLY
555
n
49
GLY
555
A
THR
556
n
50
THR
556
A
SER
557
n
51
SER
557
A
ALA
558
n
52
ALA
558
A
GLN
559
n
53
GLN
559
A
ARG
560
n
54
ARG
560
A
ALA
561
n
55
ALA
561
A
GLU
562
n
56
GLU
562
A
LEU
563
n
57
LEU
563
A
ILE
564
n
58
ILE
564
A
ALA
565
n
59
ALA
565
A
LEU
566
n
60
LEU
566
A
THR
567
n
61
THR
567
A
GLN
568
n
62
GLN
568
A
ALA
569
n
63
ALA
569
A
LEU
570
n
64
LEU
570
A
LYS
571
n
65
LYS
571
A
MET
572
n
66
MET
572
A
ALA
573
n
67
ALA
573
A
GLU
574
n
68
GLU
574
A
GLY
575
n
69
GLY
575
A
LYS
576
n
70
LYS
576
A
LYS
577
n
71
LYS
577
A
LEU
578
n
72
LEU
578
A
ASN
579
n
73
ASN
579
A
VAL
580
n
74
VAL
580
A
TYR
581
n
75
TYR
581
A
THR
582
n
76
THR
582
A
ASP
583
n
77
ASP
583
A
SER
584
n
78
SER
584
A
ARG
585
n
79
ARG
585
A
TYR
586
n
80
TYR
586
A
ALA
587
n
81
ALA
587
A
PHE
588
n
82
PHE
588
A
ALA
589
n
83
ALA
589
A
THR
590
n
84
THR
590
A
ALA
591
n
85
ALA
591
A
HIS
592
n
86
HIS
592
A
VAL
593
n
87
VAL
593
A
HIS
594
n
88
HIS
594
A
GLY
595
n
89
GLY
595
A
GLU
596
n
90
GLU
596
A
ILE
597
n
91
ILE
597
A
TYR
598
n
92
TYR
598
A
ARG
599
n
93
ARG
599
A
ARG
600
n
94
ARG
600
A
ARG
601
n
95
ARG
601
A
GLY
602
n
96
GLY
602
A
LEU
603
n
97
LEU
603
A
LEU
604
n
98
LEU
604
A
THR
605
n
99
THR
605
A
SER
606
n
100
SER
606
A
GLU
607
n
101
GLU
607
A
GLY
608
n
102
GLY
608
A
ARG
609
n
103
ARG
609
A
GLU
610
n
104
GLU
610
A
ILE
611
n
105
ILE
611
A
LYS
612
n
106
LYS
612
A
ASN
613
n
107
ASN
613
A
LYS
614
n
108
LYS
614
A
ASN
615
n
109
ASN
615
A
GLU
616
n
110
GLU
616
A
ILE
617
n
111
ILE
617
A
LEU
618
n
112
LEU
618
A
ALA
619
n
113
ALA
619
A
LEU
620
n
114
LEU
620
A
LEU
621
n
115
LEU
621
A
LYS
622
n
116
LYS
622
A
ALA
623
n
117
ALA
623
A
LEU
624
n
118
LEU
624
A
PHE
625
n
119
PHE
625
A
LEU
626
n
120
LEU
626
A
PRO
627
n
121
PRO
627
A
LYS
628
n
122
LYS
628
A
ARG
629
n
123
ARG
629
A
LEU
630
n
124
LEU
630
A
SER
631
n
125
SER
631
A
ILE
632
n
126
ILE
632
A
ILE
633
n
127
ILE
633
A
HIS
634
n
128
HIS
634
A
CYS
635
n
129
CYS
635
A
PRO
636
n
130
PRO
636
A
GLY
637
n
131
GLY
637
A
HIS
638
n
132
HIS
638
A
GLN
639
n
133
GLN
639
A
LYS
640
n
134
LYS
640
A
GLY
641
n
135
GLY
641
A
ASN
642
n
136
ASN
642
A
SER
643
n
137
SER
643
A
ALA
644
n
138
ALA
644
A
GLU
645
n
139
GLU
645
A
ALA
646
n
140
ALA
646
A
ARG
647
n
141
ARG
647
A
GLY
648
n
142
GLY
648
A
ASN
649
n
143
ASN
649
A
ARG
650
n
144
ARG
650
A
MET
651
n
145
MET
651
A
ALA
652
n
146
ALA
652
A
ASP
653
n
147
ASP
653
A
GLN
654
n
148
GLN
654
A
ALA
655
n
149
ALA
655
A
ALA
656
n
150
ALA
656
A
ARG
657
n
151
ARG
657
A
GLU
658
n
152
GLU
658
A
ALA
659
n
153
ALA
659
A
ALA
660
n
154
ALA
660
A
MET
661
n
155
MET
661
A
LYS
662
n
156
LYS
662
A
ALA
663
n
157
ALA
663
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
2230
-8
15670
A
ASP
511
A
OD2
ASP
5
1_555
A
CD
701
B
CD
CD
1_555
A
HIS
592
A
NE2
HIS
86
1_555
95.2
A
ASP
524
A
OD1
ASP
18
1_555
A
MG
705
F
MG
MG
1_555
A
GLU
562
A
OE2
GLU
56
1_555
81.4
A
ASP
524
A
OD1
ASP
18
1_555
A
MG
705
F
MG
MG
1_555
A
ASP
583
A
OD2
ASP
77
1_555
107.0
A
GLU
562
A
OE2
GLU
56
1_555
A
MG
705
F
MG
MG
1_555
A
ASP
583
A
OD2
ASP
77
1_555
115.1
A
GLU
545
A
OE1
GLU
39
1_555
A
CD
704
E
CD
CD
1_555
A
GLU
545
A
OE2
GLU
39
1_555
62.2
A
CYS
635
A
SG
CYS
129
1_555
A
CD
703
D
CD
CD
1_555
A
HIS
638
A
ND1
HIS
132
1_555
98.9
A
CYS
635
A
SG
CYS
129
1_555
A
CD
703
D
CD
CD
1_555
A
GLU
645
A
OE1
GLU
139
1_555
139.0
A
HIS
638
A
ND1
HIS
132
1_555
A
CD
703
D
CD
CD
1_555
A
GLU
645
A
OE1
GLU
139
1_555
88.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
TRP
548
A
O
TRP
42
A
N
VAL
540
A
N
VAL
34
A
O
ARG
535
A
O
ARG
29
A
N
PHE
528
A
N
PHE
22
A
N
TRP
521
A
N
TRP
15
A
O
TYR
581
A
O
TYR
75
A
N
LEU
578
A
N
LEU
72
A
O
ARG
629
A
O
ARG
123
1
A
CD
701
B
CD
1
A
ASP
516
-106.24
57.99
1
A
GLN
530
-86.48
47.51
1
A
GLU
531
74.72
88.25
1
A
THR
542
-101.03
-156.44
protein_rep.param
protein.top
ion.param
ion.top
64.4
4.18
0.00
0.00
4.18
0.00
-8.35
BULK SOLVENT MODEL USED
0.260
0.011
0.239
0.239
2.60
45.04
570
11127
11022
5.2
99.7
RANDOM
1631876.06
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
34.1514
0.35
0.42
0.36
5.00
0.52
0.44
2.60
45.04
0
1220
5
0
1215
0.008
1.4
23.5
0.84
1.57
1.50
2.82
2.00
2.07
2.00
3.31
2.50
0.384
0.045
0.328
2.76
73
1721
6
4.1
99.9
47.5
2.6
50
4E89
11127
11092
0
0
1
99.9
2.6
2.74
1
100
data collection
ADSC
Quantum
phasing
PHASER
refinement
CNS
1.1
data reduction
MOSFLM
data scaling
SCALA
Crystal Structure of RnaseH from gammaretrovirus
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
SER
557
A
SER
51
HELX_P
A
ALA
573
A
ALA
67
1
1
17
A
SER
584
A
SER
78
HELX_P
A
ALA
591
A
ALA
85
1
2
8
A
HIS
594
A
HIS
88
HELX_P
A
ARG
599
A
ARG
93
1
3
6
A
ASN
613
A
ASN
107
HELX_P
A
LEU
624
A
LEU
118
1
4
12
A
CYS
635
A
CYS
129
HELX_P
A
GLN
639
A
GLN
133
5
5
5
A
SER
643
A
SER
137
HELX_P
A
LYS
662
A
LYS
156
1
6
20
metalc
2.265
A
ASP
511
A
OD2
ASP
5
1_555
A
CD
701
B
CD
CD
1_555
metalc
2.358
A
ASP
524
A
OD1
ASP
18
1_555
A
MG
705
F
MG
MG
1_555
metalc
2.117
A
GLU
545
A
OE1
GLU
39
1_555
A
CD
704
E
CD
CD
1_555
metalc
2.180
A
GLU
545
A
OE2
GLU
39
1_555
A
CD
704
E
CD
CD
1_555
metalc
1.757
A
GLU
562
A
OE2
GLU
56
1_555
A
MG
705
F
MG
MG
1_555
metalc
1.991
A
ASP
583
A
OD2
ASP
77
1_555
A
MG
705
F
MG
MG
1_555
metalc
2.084
A
HIS
592
A
NE2
HIS
86
1_555
A
CD
701
B
CD
CD
1_555
metalc
2.645
A
CYS
635
A
SG
CYS
129
1_555
A
CD
702
C
CD
CD
1_555
metalc
2.479
A
CYS
635
A
SG
CYS
129
1_555
A
CD
703
D
CD
CD
1_555
metalc
2.416
A
HIS
638
A
ND1
HIS
132
1_555
A
CD
703
D
CD
CD
1_555
metalc
2.408
A
GLU
645
A
OE1
GLU
139
1_555
A
CD
703
D
CD
CD
1_555
HYDROLASE
Rossmann Fold, Hydrolase
POL_XMRV6
UNP
1
1164
A1Z651
PDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRY
AFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA
1164
1320
4E89
507
663
A1Z651
A
1
1
157
5
anti-parallel
anti-parallel
parallel
parallel
A
VAL
546
A
VAL
40
A
LEU
552
A
LEU
46
A
ARG
534
A
ARG
28
A
THR
541
A
THR
35
A
TYR
519
A
TYR
13
A
LEU
529
A
LEU
23
A
LYS
577
A
LYS
71
A
THR
582
A
THR
76
A
ARG
629
A
ARG
123
A
ILE
633
A
ILE
127
BINDING SITE FOR RESIDUE CD A 701
A
CD
701
Software
4
BINDING SITE FOR RESIDUE CD A 702
A
CD
702
Software
4
BINDING SITE FOR RESIDUE CD A 703
A
CD
703
Software
5
BINDING SITE FOR RESIDUE CD A 704
A
CD
704
Software
3
BINDING SITE FOR RESIDUE MG A 705
A
MG
705
Software
4
A
ASP
511
A
ASP
5
4
1_555
A
ASP
511
A
ASP
5
4
7_555
A
HIS
592
A
HIS
86
4
1_555
A
HIS
592
A
HIS
86
4
7_555
A
HIS
594
A
HIS
88
4
7_555
A
GLU
596
A
GLU
90
4
7_555
A
CYS
635
A
CYS
129
4
1_555
A
CD
703
D
CD
4
1_555
A
GLU
596
A
GLU
90
5
7_555
A
CYS
635
A
CYS
129
5
1_555
A
HIS
638
A
HIS
132
5
1_555
A
GLU
645
A
GLU
139
5
1_555
A
CD
702
C
CD
5
1_555
A
GLU
545
A
GLU
39
3
1_555
A
ARG
560
A
ARG
54
3
5_444
A
GLU
616
A
GLU
110
3
5_444
A
ASP
524
A
ASP
18
4
1_555
A
GLY
525
A
GLY
19
4
1_555
A
GLU
562
A
GLU
56
4
1_555
A
ASP
583
A
ASP
77
4
1_555
96
P 43 21 2