0.023871 0.000000 0.000000 0.000000 0.019210 0.000000 0.000000 0.000000 0.010862 0.00000 0.00000 0.00000 Cui, K. Zhu, L. Lu, W. Huang, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 41.891 52.057 92.064 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Co 2 58.933 COBALT (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O S 78.133 DIMETHYL SULFOXIDE non-polymer C8 H18 N2 O4 S 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C17 H16 O4 284.307 2-phenylethyl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CO N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N S N 90 N O N 91 N C N 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 N C N 101 N C N 102 N N N 103 N C N 104 N C N 105 N C N 106 N C N 107 N O N 108 N C N 109 N C N 110 N S N 111 N O N 112 N O N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 S C N 134 N C N 135 N O N 136 N C N 137 N C N 138 N C N 139 N O N 140 N N N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N N N 153 S C N 154 N C N 155 N O N 156 N C N 157 N C N 158 N C N 159 N O N 160 N O N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 N C N 173 N C N 174 N O N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C Y 186 N C Y 187 N N Y 188 N C Y 189 N C Y 190 N N N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N O N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 S C N 210 N C N 211 N C N 212 N C N 213 N O N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N C N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 N C N 254 N C N 255 N C N 256 N C N 257 N N N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N S N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N C N 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N C N 335 N O Y 336 N C N 337 N O N 338 N C N 339 N O Y 340 N C N 341 N O Y 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N C Y 350 N C N 351 N C Y 352 N C Y 353 N C N 354 N C N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N O N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 R C N 390 N O N 391 N C N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C N 413 N O N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C N 431 N C N 432 N C N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing Y 182 N sing Y 183 N doub Y 184 N doub N 185 N sing Y 186 N sing N 187 N sing Y 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing Y 290 N doub Y 291 N sing Y 292 N sing N 293 N sing Y 294 N doub N 295 N sing Y 296 N doub N 297 N sing Y 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing Y 323 N doub Y 324 N sing N 325 N sing N 326 N sing Y 327 N sing N 328 N doub Y 329 N doub Y 330 N doub Y 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing Y 336 N doub N 337 E doub Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing To be Published 0353 Identification of Novel Peptide Deformylase Inhibitors from Natural Products 10.2210/pdb4e9a/pdb pdb_00004e9a 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-11-22 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 1 1.0 BL17U SSRF 1 SYNCHROTRON SSRF BEAMLINE BL17U 21008.465 Peptide deformylase 11 3.5.1.88 UNP RESIDUES 2-164 1 man polymer 58.933 COBALT (II) ION 1 syn non-polymer 284.307 2-phenylethyl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate 1 syn non-polymer 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID 1 syn non-polymer 78.133 DIMETHYL SULFOXIDE 2 syn non-polymer 18.015 water 87 nat water PDF 11, Polypeptide deformylase 11 no no ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINP KFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFE KELKELQKKQKHKLEHHHHHH ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINP KFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFE KELKELQKKQKHKLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample def, def11 210 Helicobacter pylori 562 Escherichia coli BL21(DE3) Plasmid pET22b 1 2.39 48.52 EVAPORATION 7.5 HEPES, MPD, pH 7.5, EVAPORATION, temperature 290K 290 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2013-04-24 1 1 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2012-03-20 REL REL CO COBALT (II) ION QAP 2-phenylethyl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID DMS DIMETHYL SULFOXIDE HOH water 2EW7 PDB experimental model CO 300 2 CO CO 201 A C13 200 3 QAP QAP 202 A EPE 201 4 EPE EPE 203 A DMS 4001 5 DMS DMS 204 A DMS 4001 5 DMS DMS 205 A HOH 1 6 HOH HOH 301 A HOH 2 6 HOH HOH 302 A HOH 3 6 HOH HOH 303 A HOH 4 6 HOH HOH 304 A HOH 5 6 HOH HOH 305 A HOH 6 6 HOH HOH 306 A HOH 7 6 HOH HOH 307 A HOH 8 6 HOH HOH 308 A HOH 9 6 HOH HOH 309 A HOH 10 6 HOH HOH 310 A HOH 11 6 HOH HOH 311 A HOH 12 6 HOH HOH 312 A HOH 13 6 HOH HOH 313 A HOH 14 6 HOH HOH 314 A HOH 15 6 HOH HOH 315 A HOH 16 6 HOH HOH 316 A HOH 17 6 HOH HOH 317 A HOH 18 6 HOH HOH 318 A HOH 19 6 HOH HOH 319 A HOH 20 6 HOH HOH 320 A HOH 21 6 HOH HOH 321 A HOH 22 6 HOH HOH 322 A HOH 23 6 HOH HOH 323 A HOH 24 6 HOH HOH 324 A HOH 25 6 HOH HOH 325 A HOH 26 6 HOH HOH 326 A HOH 27 6 HOH HOH 327 A HOH 28 6 HOH HOH 328 A HOH 29 6 HOH HOH 329 A HOH 30 6 HOH HOH 330 A HOH 31 6 HOH HOH 331 A HOH 32 6 HOH HOH 332 A HOH 33 6 HOH HOH 333 A HOH 34 6 HOH HOH 334 A HOH 35 6 HOH HOH 335 A HOH 36 6 HOH HOH 336 A HOH 37 6 HOH HOH 337 A HOH 38 6 HOH HOH 338 A HOH 39 6 HOH HOH 339 A HOH 40 6 HOH HOH 340 A HOH 41 6 HOH HOH 341 A HOH 42 6 HOH HOH 342 A HOH 43 6 HOH HOH 343 A HOH 44 6 HOH HOH 344 A HOH 45 6 HOH HOH 345 A HOH 46 6 HOH HOH 346 A HOH 47 6 HOH HOH 347 A HOH 48 6 HOH HOH 348 A HOH 49 6 HOH HOH 349 A HOH 50 6 HOH HOH 350 A HOH 51 6 HOH HOH 351 A HOH 52 6 HOH HOH 352 A HOH 53 6 HOH HOH 353 A HOH 54 6 HOH HOH 354 A HOH 55 6 HOH HOH 355 A HOH 56 6 HOH HOH 356 A HOH 57 6 HOH HOH 357 A HOH 58 6 HOH HOH 358 A HOH 59 6 HOH HOH 359 A HOH 60 6 HOH HOH 360 A HOH 61 6 HOH HOH 361 A HOH 62 6 HOH HOH 362 A HOH 63 6 HOH HOH 363 A HOH 64 6 HOH HOH 364 A HOH 65 6 HOH HOH 365 A HOH 66 6 HOH HOH 366 A HOH 67 6 HOH HOH 367 A HOH 68 6 HOH HOH 368 A HOH 69 6 HOH HOH 369 A HOH 70 6 HOH HOH 370 A HOH 71 6 HOH HOH 371 A HOH 72 6 HOH HOH 372 A HOH 73 6 HOH HOH 373 A HOH 74 6 HOH HOH 374 A HOH 75 6 HOH HOH 375 A HOH 76 6 HOH HOH 376 A HOH 77 6 HOH HOH 377 A HOH 78 6 HOH HOH 378 A HOH 79 6 HOH HOH 379 A HOH 80 6 HOH HOH 380 A HOH 81 6 HOH HOH 381 A HOH 82 6 HOH HOH 382 A HOH 83 6 HOH HOH 383 A HOH 84 6 HOH HOH 384 A HOH 85 6 HOH HOH 385 A HOH 86 6 HOH HOH 386 A HOH 87 6 HOH HOH 387 A ALA 2 n 1 ALA 2 A LEU 3 n 2 LEU 3 A LEU 4 n 3 LEU 4 A GLU 5 n 4 GLU 5 A ILE 6 n 5 ILE 6 A ILE 7 n 6 ILE 7 A HIS 8 n 7 HIS 8 A TYR 9 n 8 TYR 9 A PRO 10 n 9 PRO 10 A SER 11 n 10 SER 11 A LYS 12 n 11 LYS 12 A ILE 13 n 12 ILE 13 A LEU 14 n 13 LEU 14 A ARG 15 n 14 ARG 15 A THR 16 n 15 THR 16 A ILE 17 n 16 ILE 17 A SER 18 n 17 SER 18 A LYS 19 n 18 LYS 19 A GLU 20 n 19 GLU 20 A VAL 21 n 20 VAL 21 A VAL 22 n 21 VAL 22 A SER 23 n 22 SER 23 A PHE 24 n 23 PHE 24 A ASP 25 n 24 ASP 25 A ALA 26 n 25 ALA 26 A LYS 27 n 26 LYS 27 A LEU 28 n 27 LEU 28 A HIS 29 n 28 HIS 29 A GLN 30 n 29 GLN 30 A GLN 31 n 30 GLN 31 A LEU 32 n 31 LEU 32 A ASP 33 n 32 ASP 33 A ASP 34 n 33 ASP 34 A MET 35 n 34 MET 35 A TYR 36 n 35 TYR 36 A GLU 37 n 36 GLU 37 A THR 38 n 37 THR 38 A MET 39 n 38 MET 39 A ILE 40 n 39 ILE 40 A ALA 41 n 40 ALA 41 A SER 42 n 41 SER 42 A GLU 43 n 42 GLU 43 A GLY 44 n 43 GLY 44 A ILE 45 n 44 ILE 45 A GLY 46 n 45 GLY 46 A LEU 47 n 46 LEU 47 A ALA 48 n 47 ALA 48 A ALA 49 n 48 ALA 49 A ILE 50 n 49 ILE 50 A GLN 51 n 50 GLN 51 A VAL 52 n 51 VAL 52 A GLY 53 n 52 GLY 53 A LEU 54 n 53 LEU 54 A PRO 55 n 54 PRO 55 A LEU 56 n 55 LEU 56 A ARG 57 n 56 ARG 57 A MET 58 n 57 MET 58 A LEU 59 n 58 LEU 59 A ILE 60 n 59 ILE 60 A ILE 61 n 60 ILE 61 A ASN 62 n 61 ASN 62 A LEU 63 n 62 LEU 63 A PRO 64 n 63 PRO 64 A GLN 65 n 64 GLN 65 A GLU 66 n 65 GLU 66 A ASP 67 n 66 ASP 67 A GLY 68 n 67 GLY 68 A VAL 69 n 68 VAL 69 A GLN 70 n 69 GLN 70 A HIS 71 n 70 HIS 71 A LYS 72 n 71 LYS 72 A GLU 73 n 72 GLU 73 A ASP 74 n 73 ASP 74 A CYS 75 n 74 CYS 75 A LEU 76 n 75 LEU 76 A GLU 77 n 76 GLU 77 A ILE 78 n 77 ILE 78 A ILE 79 n 78 ILE 79 A ASN 80 n 79 ASN 80 A PRO 81 n 80 PRO 81 A LYS 82 n 81 LYS 82 A PHE 83 n 82 PHE 83 A ILE 84 n 83 ILE 84 A GLU 85 n 84 GLU 85 A THR 86 n 85 THR 86 A GLY 87 n 86 GLY 87 A GLY 88 n 87 GLY 88 A SER 89 n 88 SER 89 A MET 90 n 89 MET 90 A MET 91 n 90 MET 91 A TYR 92 n 91 TYR 92 A LYS 93 n 92 LYS 93 A GLU 94 n 93 GLU 94 A GLY 95 n 94 GLY 95 A CYS 96 n 95 CYS 96 A LEU 97 n 96 LEU 97 A SER 98 n 97 SER 98 A VAL 99 n 98 VAL 99 A PRO 100 n 99 PRO 100 A GLY 101 n 100 GLY 101 A PHE 102 n 101 PHE 102 A TYR 103 n 102 TYR 103 A GLU 104 n 103 GLU 104 A GLU 105 n 104 GLU 105 A VAL 106 n 105 VAL 106 A GLU 107 n 106 GLU 107 A ARG 108 n 107 ARG 108 A PHE 109 n 108 PHE 109 A GLU 110 n 109 GLU 110 A LYS 111 n 110 LYS 111 A VAL 112 n 111 VAL 112 A LYS 113 n 112 LYS 113 A ILE 114 n 113 ILE 114 A GLU 115 n 114 GLU 115 A TYR 116 n 115 TYR 116 A GLN 117 n 116 GLN 117 A ASN 118 n 117 ASN 118 A ARG 119 n 118 ARG 119 A PHE 120 n 119 PHE 120 A ALA 121 n 120 ALA 121 A GLU 122 n 121 GLU 122 A VAL 123 n 122 VAL 123 A LYS 124 n 123 LYS 124 A VAL 125 n 124 VAL 125 A LEU 126 n 125 LEU 126 A GLU 127 n 126 GLU 127 A ALA 128 n 127 ALA 128 A SER 129 n 128 SER 129 A GLU 130 n 129 GLU 130 A LEU 131 n 130 LEU 131 A LEU 132 n 131 LEU 132 A ALA 133 n 132 ALA 133 A VAL 134 n 133 VAL 134 A ALA 135 n 134 ALA 135 A ILE 136 n 135 ILE 136 A GLN 137 n 136 GLN 137 A HIS 138 n 137 HIS 138 A GLU 139 n 138 GLU 139 A ILE 140 n 139 ILE 140 A ASP 141 n 140 ASP 141 A HIS 142 n 141 HIS 142 A LEU 143 n 142 LEU 143 A ASN 144 n 143 ASN 144 A GLY 145 n 144 GLY 145 A VAL 146 n 145 VAL 146 A LEU 147 n 146 LEU 147 A PHE 148 n 147 PHE 148 A VAL 149 n 148 VAL 149 A ASP 150 n 149 ASP 150 A LYS 151 n 150 LYS 151 A LEU 152 n 151 LEU 152 A SER 153 n 152 SER 153 A ILE 154 n 153 ILE 154 A LEU 155 n 154 LEU 155 A LYS 156 n 155 LYS 156 A ARG 157 n 156 ARG 157 A LYS 158 n 157 LYS 158 A LYS 159 n 158 LYS 159 A PHE 160 n 159 PHE 160 A GLU 161 n 160 GLU 161 A LYS 162 n 161 LYS 162 A GLU 163 n 162 GLU 163 A LEU 164 n 163 LEU 164 A n 164 165 A n 165 166 A n 166 167 A n 167 168 A n 168 169 A n 169 170 A n 170 171 A n 171 172 A n 172 173 A n 173 174 A n 174 175 A n 175 176 A n 176 177 A n 177 178 A n 178 179 A n 179 180 A n 180 181 A n 181 182 A author_and_software_defined_assembly PISA 1 monomeric A HIS 138 A NE2 HIS 137 1_555 A CO 201 B CO CO 1_555 A HIS 142 A NE2 HIS 141 1_555 107.1 A HIS 138 A NE2 HIS 137 1_555 A CO 201 B CO CO 1_555 A HOH 332 G O HOH 1_555 107.8 A HIS 142 A NE2 HIS 141 1_555 A CO 201 B CO CO 1_555 A HOH 332 G O HOH 1_555 94.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 47 A N LEU 46 A O ILE 60 A O ILE 59 A N ILE 61 A N ILE 60 A O LEU 76 A O LEU 75 A N ILE 84 A N ILE 83 A O LYS 113 A O LYS 112 A N TYR 116 A N TYR 115 A O LYS 124 A O LYS 123 A N MET 90 A N MET 89 A O ARG 108 A O ARG 107 1 A LYS 165 A LYS 164 1 Y 1 A GLU 166 A GLU 165 1 Y 1 A LEU 167 A LEU 166 1 Y 1 A GLN 168 A GLN 167 1 Y 1 A LYS 169 A LYS 168 1 Y 1 A LYS 170 A LYS 169 1 Y 1 A GLN 171 A GLN 170 1 Y 1 A LYS 172 A LYS 171 1 Y 1 A HIS 173 A HIS 172 1 Y 1 A LYS 174 A LYS 173 1 Y 1 A LEU 175 A LEU 174 1 Y 1 A GLU 176 A GLU 175 1 Y 1 A HIS 177 A HIS 176 1 Y 1 A HIS 178 A HIS 177 1 Y 1 A HIS 179 A HIS 178 1 Y 1 A HIS 180 A HIS 179 1 Y 1 A HIS 181 A HIS 180 1 Y 1 A HIS 182 A HIS 181 1 Y 1 A A O O HOH HOH 364 365 1.90 1 A A O O PRO HOH 64 344 1.92 1 A A O O HOH HOH 377 384 1.98 1 A A O O HOH HOH 362 381 2.01 1 A A O O HOH HOH 362 378 2.02 1 A A NZ O LYS HOH 82 386 2.06 1 A A O O HOH HOH 366 369 2.06 1 A A OE2 O GLU HOH 85 360 2.08 1 A A O O HOH HOH 313 382 2.09 1 A A OE2 O GLU HOH 104 376 2.17 1 A GLN 65 -82.59 -154.46 1 A GLU 130 56.48 -138.98 -0.4800 0.0000 -0.0000 0.3879 -0.0000 0.0921 0.2302 0.2076 0.2088 1.662 34.48 1229 24141 5.09 98.84 0.16 1 1.35 MOLECULAR REPLACEMENT 19.82 1.11 1.30 2EW7 ML FLAT BULK SOLVENT MODEL 52.855 0.377 1.662 34.48 87 1440 45 0 1308 0.007 1372 1.098 1841 18.000 536 0.073 205 0.004 229 0.2680 0.2692 1.7282 112 2458 9 97.00 0.2502 0.2297 1.8068 141 2539 9 100.00 0.2115 0.1931 1.9021 150 2515 9 100.00 0.1882 0.1827 2.0212 142 2536 9 100.00 0.2162 0.1771 2.1773 146 2533 9 100.00 0.2070 0.1930 2.3963 118 2576 9 100.00 0.2266 0.1957 2.7429 143 2577 9 100.00 0.2113 0.1991 3.4553 124 2598 9 99.00 0.2546 0.2280 34.4913 153 2580 9 95.00 1.66 34.484 4E9A 24141 1 data collection HKL-2000 refinement PHENIX (phenix.refine: 1.7.3_928) data reduction HKL-2000 data scaling HKL-2000 Structure of Peptide Deformylase form Helicobacter Pylori in complex with inhibitor 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N A SER 11 A SER 10 HELX_P A THR 16 A THR 15 5 1 6 A ASP 25 A ASP 24 HELX_P A SER 42 A SER 41 1 2 18 A ILE 50 A ILE 49 HELX_P A GLY 53 A GLY 52 5 3 4 A HIS 71 A HIS 70 HELX_P A CYS 75 A CYS 74 5 4 5 A GLU 130 A GLU 129 HELX_P A ASN 144 A ASN 143 1 5 15 A LEU 147 A LEU 146 HELX_P A LEU 152 A LEU 151 5 6 6 A SER 153 A SER 152 HELX_P A LEU 164 A LEU 163 1 7 12 metalc 2.132 A HIS 138 A NE2 HIS 137 1_555 A CO 201 B CO CO 1_555 metalc 2.134 A HIS 142 A NE2 HIS 141 1_555 A CO 201 B CO CO 1_555 metalc 2.204 A CO 201 B CO CO 1_555 A HOH 332 G O HOH 1_555 HYDROLASE Hydrolase A TYR 9 A TYR 8 1 A PRO 10 A PRO 9 8.01 Q672W7_HELPX UNP 1 2 Q672W7 ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINP KFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFE KELKELQKKQKHK 2 174 4E9A 2 174 Q672W7 A 1 1 173 1 expression tag LEU 175 4E9A A Q672W7 UNP 174 1 expression tag GLU 176 4E9A A Q672W7 UNP 175 1 expression tag HIS 177 4E9A A Q672W7 UNP 176 1 expression tag HIS 178 4E9A A Q672W7 UNP 177 1 expression tag HIS 179 4E9A A Q672W7 UNP 178 1 expression tag HIS 180 4E9A A Q672W7 UNP 179 1 expression tag HIS 181 4E9A A Q672W7 UNP 180 1 expression tag HIS 182 4E9A A Q672W7 UNP 181 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 46 A GLY 45 A ALA 48 A ALA 47 A MET 58 A MET 57 A ILE 61 A ILE 60 A LEU 76 A LEU 75 A GLY 87 A GLY 86 A LYS 111 A LYS 110 A GLN 117 A GLN 116 A VAL 123 A VAL 122 A SER 129 A SER 128 A MET 90 A MET 89 A GLU 94 A GLU 93 A GLU 104 A GLU 103 A ARG 108 A ARG 107 BINDING SITE FOR RESIDUE CO A 201 A CO 201 Software 4 BINDING SITE FOR RESIDUE QAP A 202 A QAP 202 Software 15 BINDING SITE FOR RESIDUE EPE A 203 A EPE 203 Software 5 BINDING SITE FOR RESIDUE DMS A 204 A DMS 204 Software 3 BINDING SITE FOR RESIDUE DMS A 205 A DMS 205 Software 4 A CYS 96 A CYS 95 4 1_555 A HIS 138 A HIS 137 4 1_555 A HIS 142 A HIS 141 4 1_555 A HOH 332 G HOH 4 1_555 A SER 42 A SER 41 15 1_555 A GLY 44 A GLY 43 15 1_555 A ILE 45 A ILE 44 15 1_555 A GLY 46 A GLY 45 15 1_555 A GLU 94 A GLU 93 15 1_555 A GLY 95 A GLY 94 15 1_555 A CYS 96 A CYS 95 15 1_555 A LEU 97 A LEU 96 15 1_555 A PRO 100 A PRO 99 15 1_555 A GLY 101 A GLY 100 15 1_555 A TYR 103 A TYR 102 15 1_555 A LEU 131 A LEU 130 15 1_555 A HIS 138 A HIS 137 15 1_555 A GLU 139 A GLU 138 15 1_555 A HOH 307 G HOH 15 1_555 A ILE 17 A ILE 16 5 1_555 A GLU 20 A GLU 19 5 1_555 A ARG 57 A ARG 56 5 1_555 A ASN 144 A ASN 143 5 1_555 A HOH 358 G HOH 5 1_555 A ASN 62 A ASN 61 3 1_555 A LEU 63 A LEU 62 3 1_555 A ASP 74 A ASP 73 3 1_555 A SER 23 A SER 22 4 1_555 A ASP 25 A ASP 24 4 1_555 A LYS 27 A LYS 26 4 1_555 A GLN 31 A GLN 30 4 1_555 19 P 21 21 21