0.007823
0.004516
0.000000
0.000000
0.009033
0.000000
0.000000
0.000000
0.005897
0.00000
0.00000
0.00000
Hong, S.B.
Kim, B.W.
Kim, J.H.
Song, H.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
127.833
127.833
169.589
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
Hg 2
200.590
MERCURY (II) ION
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
68
1409
1417
10.1107/S0907444912034166
22993095
Structure of the autophagic E2 enzyme Atg10
2012
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
1
CCD
2009-11-07
ADSC QUANTUM 315
CCD
2010-02-08
ADSC QUANTUM 210
double crystal monochromator
MAD
M
x-ray
1
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97951
1.0
0.97966
1.0
0.96
1.0
1
1.0
4A
PAL/PLS
0.97951, 0.97966, 0.96
SYNCHROTRON
PAL/PLS BEAMLINE 4A
AR-NW12A
Photon Factory
1
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NW12A
20109.283
Ubiquitin-like-conjugating enzyme ATG10
6.3.2.-
2
man
polymer
200.590
MERCURY (II) ION
2
syn
non-polymer
18.015
water
36
nat
water
Autophagy-related protein 10
no
yes
GS(MSE)IPYQEWHSQLQSLYDSQIFHNWALCQDVHLNDEKDGLLLRLIPTRQLQKNTERIENKLLNHIELYLTYSKVYN
EPLLLLRIWEEKSIDGIP(MSE)TKL(MSE)LPTDIESLLDVQGKFQLGLDTIINLEGSVWYSFHPCDTSCIVGDQAEF
(MSE)STYLRRWVSIFIFSWLGYEDS
GSMIPYQEWHSQLQSLYDSQIFHNWALCQDVHLNDEKDGLLLRLIPTRQLQKNTERIENKLLNHIELYLTYSKVYNEPLL
LLRIWEEKSIDGIPMTKLMLPTDIESLLDVQGKFQLGLDTIINLEGSVWYSFHPCDTSCIVGDQAEFMSTYLRRWVSIFI
FSWLGYEDS
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Baker's yeast
ATCC 204508, S288c
sample
ATG10, APG10, YLL042C
559292
Saccharomyces cerevisiae
562
Escherichia coli
2
4.97
75.27
VAPOR DIFFUSION, HANGING DROP
8.0
50mM bis-Tris-HCl (pH 6.15), 3M NaCl, 1mM 1,4-diacetoxymercury-2,3-dimetoxybutane, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Database references
1
0
2012-10-03
1
1
2013-07-24
RCSB
Y
PDBJ
2012-03-24
REL
REL
HG
MERCURY (II) ION
HOH
water
HG
201
2
HG
HG
201
A
HG
201
2
HG
HG
201
B
HOH
2
3
HOH
HOH
301
A
HOH
5
3
HOH
HOH
302
A
HOH
6
3
HOH
HOH
303
A
HOH
7
3
HOH
HOH
304
A
HOH
8
3
HOH
HOH
305
A
HOH
9
3
HOH
HOH
306
A
HOH
10
3
HOH
HOH
307
A
HOH
12
3
HOH
HOH
308
A
HOH
13
3
HOH
HOH
309
A
HOH
15
3
HOH
HOH
310
A
HOH
18
3
HOH
HOH
311
A
HOH
19
3
HOH
HOH
312
A
HOH
21
3
HOH
HOH
313
A
HOH
25
3
HOH
HOH
314
A
HOH
26
3
HOH
HOH
315
A
HOH
30
3
HOH
HOH
316
A
HOH
33
3
HOH
HOH
317
A
HOH
1
3
HOH
HOH
301
B
HOH
3
3
HOH
HOH
302
B
HOH
4
3
HOH
HOH
303
B
HOH
11
3
HOH
HOH
304
B
HOH
14
3
HOH
HOH
305
B
HOH
16
3
HOH
HOH
306
B
HOH
17
3
HOH
HOH
307
B
HOH
20
3
HOH
HOH
308
B
HOH
22
3
HOH
HOH
309
B
HOH
23
3
HOH
HOH
310
B
HOH
24
3
HOH
HOH
311
B
HOH
27
3
HOH
HOH
312
B
HOH
28
3
HOH
HOH
313
B
HOH
29
3
HOH
HOH
314
B
HOH
31
3
HOH
HOH
315
B
HOH
32
3
HOH
HOH
316
B
HOH
34
3
HOH
HOH
317
B
HOH
35
3
HOH
HOH
318
B
HOH
36
3
HOH
HOH
319
B
GLY
-1
n
1
GLY
-1
A
SER
0
n
2
SER
0
A
MSE
1
n
3
MSE
1
A
ILE
2
n
4
ILE
2
A
PRO
3
n
5
PRO
3
A
TYR
4
n
6
TYR
4
A
GLN
5
n
7
GLN
5
A
GLU
6
n
8
GLU
6
A
TRP
7
n
9
TRP
7
A
HIS
8
n
10
HIS
8
A
SER
9
n
11
SER
9
A
GLN
10
n
12
GLN
10
A
LEU
11
n
13
LEU
11
A
GLN
12
n
14
GLN
12
A
SER
13
n
15
SER
13
A
LEU
14
n
16
LEU
14
A
TYR
15
n
17
TYR
15
A
ASP
16
n
18
ASP
16
A
SER
17
n
19
SER
17
A
GLN
18
n
20
GLN
18
A
ILE
19
n
21
ILE
19
A
PHE
20
n
22
PHE
20
A
HIS
21
n
23
HIS
21
A
ASN
22
n
24
ASN
22
A
TRP
23
n
25
TRP
23
A
ALA
24
n
26
ALA
24
A
LEU
25
n
27
LEU
25
A
CYS
26
n
28
CYS
26
A
GLN
27
n
29
GLN
27
A
ASP
28
n
30
ASP
28
A
VAL
29
n
31
VAL
29
A
HIS
30
n
32
HIS
30
A
LEU
31
n
33
LEU
31
A
ASN
32
n
34
ASN
32
A
ASP
33
n
35
ASP
33
A
GLU
34
n
36
GLU
34
A
LYS
35
n
37
LYS
35
A
ASP
36
n
38
ASP
36
A
GLY
37
n
39
GLY
37
A
LEU
38
n
40
LEU
38
A
LEU
39
n
41
LEU
39
A
LEU
40
n
42
LEU
40
A
ARG
41
n
43
ARG
41
A
LEU
42
n
44
LEU
42
A
ILE
43
n
45
ILE
43
A
PRO
44
n
46
PRO
44
A
THR
45
n
47
THR
45
A
ARG
46
n
48
ARG
46
A
GLN
47
n
49
GLN
47
A
LEU
48
n
50
LEU
48
A
n
51
49
A
n
52
50
A
n
53
51
A
n
54
52
A
n
55
53
A
n
56
54
A
n
57
55
A
n
58
56
A
n
59
57
A
n
60
58
A
LEU
59
n
61
LEU
59
A
LEU
60
n
62
LEU
60
A
ASN
61
n
63
ASN
61
A
HIS
62
n
64
HIS
62
A
ILE
63
n
65
ILE
63
A
GLU
64
n
66
GLU
64
A
LEU
65
n
67
LEU
65
A
TYR
66
n
68
TYR
66
A
LEU
67
n
69
LEU
67
A
THR
68
n
70
THR
68
A
TYR
69
n
71
TYR
69
A
SER
70
n
72
SER
70
A
LYS
71
n
73
LYS
71
A
VAL
72
n
74
VAL
72
A
TYR
73
n
75
TYR
73
A
ASN
74
n
76
ASN
74
A
GLU
75
n
77
GLU
75
A
PRO
76
n
78
PRO
76
A
LEU
77
n
79
LEU
77
A
LEU
78
n
80
LEU
78
A
LEU
79
n
81
LEU
79
A
LEU
80
n
82
LEU
80
A
ARG
81
n
83
ARG
81
A
ILE
82
n
84
ILE
82
A
TRP
83
n
85
TRP
83
A
GLU
84
n
86
GLU
84
A
GLU
85
n
87
GLU
85
A
LYS
86
n
88
LYS
86
A
SER
87
n
89
SER
87
A
ILE
88
n
90
ILE
88
A
ASP
89
n
91
ASP
89
A
GLY
90
n
92
GLY
90
A
ILE
91
n
93
ILE
91
A
PRO
92
n
94
PRO
92
A
MSE
93
n
95
MSE
93
A
THR
94
n
96
THR
94
A
LYS
95
n
97
LYS
95
A
LEU
96
n
98
LEU
96
A
MSE
97
n
99
MSE
97
A
LEU
98
n
100
LEU
98
A
PRO
99
n
101
PRO
99
A
THR
100
n
102
THR
100
A
ASP
101
n
103
ASP
101
A
ILE
102
n
104
ILE
102
A
GLU
103
n
105
GLU
103
A
SER
104
n
106
SER
104
A
LEU
105
n
107
LEU
105
A
LEU
106
n
108
LEU
106
A
ASP
107
n
109
ASP
107
A
VAL
108
n
110
VAL
108
A
GLN
109
n
111
GLN
109
A
GLY
110
n
112
GLY
110
A
LYS
111
n
113
LYS
111
A
PHE
112
n
114
PHE
112
A
GLN
113
n
115
GLN
113
A
LEU
114
n
116
LEU
114
A
GLY
115
n
117
GLY
115
A
LEU
116
n
118
LEU
116
A
ASP
117
n
119
ASP
117
A
THR
118
n
120
THR
118
A
ILE
119
n
121
ILE
119
A
ILE
120
n
122
ILE
120
A
ASN
121
n
123
ASN
121
A
LEU
122
n
124
LEU
122
A
GLU
123
n
125
GLU
123
A
GLY
124
n
126
GLY
124
A
SER
125
n
127
SER
125
A
VAL
126
n
128
VAL
126
A
TRP
127
n
129
TRP
127
A
TYR
128
n
130
TYR
128
A
SER
129
n
131
SER
129
A
PHE
130
n
132
PHE
130
A
HIS
131
n
133
HIS
131
A
PRO
132
n
134
PRO
132
A
CYS
133
n
135
CYS
133
A
ASP
134
n
136
ASP
134
A
THR
135
n
137
THR
135
A
SER
136
n
138
SER
136
A
CYS
137
n
139
CYS
137
A
ILE
138
n
140
ILE
138
A
VAL
139
n
141
VAL
139
A
GLY
140
n
142
GLY
140
A
ASP
141
n
143
ASP
141
A
GLN
142
n
144
GLN
142
A
ALA
143
n
145
ALA
143
A
GLU
144
n
146
GLU
144
A
PHE
145
n
147
PHE
145
A
MSE
146
n
148
MSE
146
A
SER
147
n
149
SER
147
A
THR
148
n
150
THR
148
A
TYR
149
n
151
TYR
149
A
LEU
150
n
152
LEU
150
A
ARG
151
n
153
ARG
151
A
ARG
152
n
154
ARG
152
A
TRP
153
n
155
TRP
153
A
VAL
154
n
156
VAL
154
A
SER
155
n
157
SER
155
A
ILE
156
n
158
ILE
156
A
PHE
157
n
159
PHE
157
A
ILE
158
n
160
ILE
158
A
PHE
159
n
161
PHE
159
A
SER
160
n
162
SER
160
A
TRP
161
n
163
TRP
161
A
LEU
162
n
164
LEU
162
A
GLY
163
n
165
GLY
163
A
TYR
164
n
166
TYR
164
A
GLU
165
n
167
GLU
165
A
n
168
166
A
n
169
167
A
GLY
-1
n
1
GLY
-1
B
SER
0
n
2
SER
0
B
MSE
1
n
3
MSE
1
B
ILE
2
n
4
ILE
2
B
PRO
3
n
5
PRO
3
B
TYR
4
n
6
TYR
4
B
GLN
5
n
7
GLN
5
B
GLU
6
n
8
GLU
6
B
TRP
7
n
9
TRP
7
B
HIS
8
n
10
HIS
8
B
SER
9
n
11
SER
9
B
GLN
10
n
12
GLN
10
B
LEU
11
n
13
LEU
11
B
GLN
12
n
14
GLN
12
B
SER
13
n
15
SER
13
B
LEU
14
n
16
LEU
14
B
TYR
15
n
17
TYR
15
B
ASP
16
n
18
ASP
16
B
SER
17
n
19
SER
17
B
GLN
18
n
20
GLN
18
B
ILE
19
n
21
ILE
19
B
PHE
20
n
22
PHE
20
B
HIS
21
n
23
HIS
21
B
ASN
22
n
24
ASN
22
B
TRP
23
n
25
TRP
23
B
ALA
24
n
26
ALA
24
B
LEU
25
n
27
LEU
25
B
CYS
26
n
28
CYS
26
B
GLN
27
n
29
GLN
27
B
ASP
28
n
30
ASP
28
B
VAL
29
n
31
VAL
29
B
HIS
30
n
32
HIS
30
B
LEU
31
n
33
LEU
31
B
ASN
32
n
34
ASN
32
B
ASP
33
n
35
ASP
33
B
GLU
34
n
36
GLU
34
B
LYS
35
n
37
LYS
35
B
ASP
36
n
38
ASP
36
B
GLY
37
n
39
GLY
37
B
LEU
38
n
40
LEU
38
B
LEU
39
n
41
LEU
39
B
LEU
40
n
42
LEU
40
B
ARG
41
n
43
ARG
41
B
LEU
42
n
44
LEU
42
B
ILE
43
n
45
ILE
43
B
PRO
44
n
46
PRO
44
B
THR
45
n
47
THR
45
B
ARG
46
n
48
ARG
46
B
GLN
47
n
49
GLN
47
B
LEU
48
n
50
LEU
48
B
n
51
49
B
n
52
50
B
n
53
51
B
n
54
52
B
n
55
53
B
n
56
54
B
n
57
55
B
n
58
56
B
n
59
57
B
n
60
58
B
LEU
59
n
61
LEU
59
B
LEU
60
n
62
LEU
60
B
ASN
61
n
63
ASN
61
B
HIS
62
n
64
HIS
62
B
ILE
63
n
65
ILE
63
B
GLU
64
n
66
GLU
64
B
LEU
65
n
67
LEU
65
B
TYR
66
n
68
TYR
66
B
LEU
67
n
69
LEU
67
B
THR
68
n
70
THR
68
B
TYR
69
n
71
TYR
69
B
SER
70
n
72
SER
70
B
LYS
71
n
73
LYS
71
B
VAL
72
n
74
VAL
72
B
TYR
73
n
75
TYR
73
B
ASN
74
n
76
ASN
74
B
GLU
75
n
77
GLU
75
B
PRO
76
n
78
PRO
76
B
LEU
77
n
79
LEU
77
B
LEU
78
n
80
LEU
78
B
LEU
79
n
81
LEU
79
B
LEU
80
n
82
LEU
80
B
ARG
81
n
83
ARG
81
B
ILE
82
n
84
ILE
82
B
TRP
83
n
85
TRP
83
B
GLU
84
n
86
GLU
84
B
GLU
85
n
87
GLU
85
B
LYS
86
n
88
LYS
86
B
SER
87
n
89
SER
87
B
ILE
88
n
90
ILE
88
B
ASP
89
n
91
ASP
89
B
GLY
90
n
92
GLY
90
B
ILE
91
n
93
ILE
91
B
PRO
92
n
94
PRO
92
B
MSE
93
n
95
MSE
93
B
THR
94
n
96
THR
94
B
LYS
95
n
97
LYS
95
B
LEU
96
n
98
LEU
96
B
MSE
97
n
99
MSE
97
B
LEU
98
n
100
LEU
98
B
PRO
99
n
101
PRO
99
B
THR
100
n
102
THR
100
B
ASP
101
n
103
ASP
101
B
ILE
102
n
104
ILE
102
B
GLU
103
n
105
GLU
103
B
SER
104
n
106
SER
104
B
LEU
105
n
107
LEU
105
B
LEU
106
n
108
LEU
106
B
ASP
107
n
109
ASP
107
B
VAL
108
n
110
VAL
108
B
GLN
109
n
111
GLN
109
B
GLY
110
n
112
GLY
110
B
LYS
111
n
113
LYS
111
B
PHE
112
n
114
PHE
112
B
GLN
113
n
115
GLN
113
B
LEU
114
n
116
LEU
114
B
GLY
115
n
117
GLY
115
B
LEU
116
n
118
LEU
116
B
ASP
117
n
119
ASP
117
B
THR
118
n
120
THR
118
B
ILE
119
n
121
ILE
119
B
ILE
120
n
122
ILE
120
B
ASN
121
n
123
ASN
121
B
LEU
122
n
124
LEU
122
B
GLU
123
n
125
GLU
123
B
GLY
124
n
126
GLY
124
B
SER
125
n
127
SER
125
B
VAL
126
n
128
VAL
126
B
TRP
127
n
129
TRP
127
B
TYR
128
n
130
TYR
128
B
SER
129
n
131
SER
129
B
PHE
130
n
132
PHE
130
B
HIS
131
n
133
HIS
131
B
PRO
132
n
134
PRO
132
B
CYS
133
n
135
CYS
133
B
ASP
134
n
136
ASP
134
B
THR
135
n
137
THR
135
B
SER
136
n
138
SER
136
B
CYS
137
n
139
CYS
137
B
ILE
138
n
140
ILE
138
B
VAL
139
n
141
VAL
139
B
GLY
140
n
142
GLY
140
B
ASP
141
n
143
ASP
141
B
GLN
142
n
144
GLN
142
B
ALA
143
n
145
ALA
143
B
GLU
144
n
146
GLU
144
B
PHE
145
n
147
PHE
145
B
MSE
146
n
148
MSE
146
B
SER
147
n
149
SER
147
B
THR
148
n
150
THR
148
B
TYR
149
n
151
TYR
149
B
LEU
150
n
152
LEU
150
B
ARG
151
n
153
ARG
151
B
ARG
152
n
154
ARG
152
B
TRP
153
n
155
TRP
153
B
VAL
154
n
156
VAL
154
B
SER
155
n
157
SER
155
B
ILE
156
n
158
ILE
156
B
PHE
157
n
159
PHE
157
B
ILE
158
n
160
ILE
158
B
PHE
159
n
161
PHE
159
B
SER
160
n
162
SER
160
B
TRP
161
n
163
TRP
161
B
LEU
162
n
164
LEU
162
B
GLY
163
n
165
GLY
163
B
TYR
164
n
166
TYR
164
B
GLU
165
n
167
GLU
165
B
n
168
166
B
n
169
167
B
8.2972
-3.8139
0.4800
6.2177
2.0702
6.4229
0.0233
-0.0440
1.1589
-0.6132
0.5121
-0.8412
-1.1239
0.6925
-0.5242
0.7524
-0.1329
0.0855
0.4343
-0.1379
0.4740
refined
66.7484
60.9172
113.8053
X-RAY DIFFRACTION
3.9434
-3.7570
-3.4038
3.7953
3.6062
5.1365
0.0363
-0.0538
-0.0463
-0.1116
0.2254
-0.0919
0.1123
0.7918
-0.2575
0.5072
0.0344
-0.0155
0.5105
-0.0568
0.3556
refined
69.1762
45.0089
108.3175
X-RAY DIFFRACTION
1.6746
-0.9461
-0.9330
0.5984
0.4693
0.5323
0.0703
-1.7062
-0.4172
0.5579
-0.4314
-1.3010
0.4920
-0.1487
0.2537
1.2157
0.0436
-0.0332
1.0304
0.2543
1.0402
refined
61.5544
38.7830
119.4785
X-RAY DIFFRACTION
4.1940
-0.0897
1.9045
7.7530
5.6716
8.9192
-0.0218
-0.5156
0.1159
0.4765
0.3177
0.0563
-0.2252
-0.3791
-0.2864
0.4129
0.1028
-0.0039
0.4704
0.0633
0.3169
refined
61.7120
52.9009
118.7661
X-RAY DIFFRACTION
3.9089
-2.9068
1.0748
3.1390
0.7934
4.7430
-0.2503
-1.2176
0.3759
1.0922
0.0686
0.9275
0.4790
-0.1020
0.4226
0.4814
0.1813
0.0876
0.5446
-0.0181
0.4521
refined
37.0395
42.6006
121.6993
X-RAY DIFFRACTION
5.3534
-0.0882
-1.0783
6.7760
1.2974
3.9116
-0.0906
0.4659
-0.6392
-0.0844
-0.4680
0.9981
0.6096
-0.4534
0.4401
0.3316
0.1023
0.0753
0.3602
-0.1284
0.6085
refined
36.8940
35.6351
108.5384
X-RAY DIFFRACTION
1.4547
-2.4525
-1.4367
5.2381
4.8107
6.8756
0.3619
0.3039
-0.2359
-0.5298
0.0375
-0.0207
-0.2994
0.1642
-0.4802
0.4638
0.1397
0.0217
0.4900
-0.0695
0.6371
refined
45.1951
34.9189
95.7244
X-RAY DIFFRACTION
0.2013
-0.0921
-0.4345
0.1034
0.4770
2.3304
0.3321
1.6806
0.4826
-1.3565
-1.2013
-0.3515
0.4556
-0.8308
1.4387
1.0206
0.1968
-0.0465
0.9618
-0.2179
1.1202
refined
44.9710
49.9174
98.7665
X-RAY DIFFRACTION
7.0420
-3.3638
-2.4204
2.7192
3.5583
6.4189
-0.1481
0.0353
0.3437
0.4988
0.2640
-0.5541
0.1081
0.4563
-0.2380
0.3867
-0.0070
0.0280
0.4949
-0.0451
0.4342
refined
47.2124
42.6096
107.7213
X-RAY DIFFRACTION
8.1702
-3.6846
-2.7900
6.8407
1.4153
8.6991
-0.5371
-0.1254
0.4338
0.0382
-0.1308
0.3783
-0.8919
0.2805
0.3253
0.3000
0.0763
0.0400
0.3003
-0.0496
0.5168
refined
33.3636
49.8118
113.2625
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESSEQ -1:31)
X-RAY DIFFRACTION
2
CHAIN A AND (RESSEQ 32:106)
X-RAY DIFFRACTION
3
CHAIN A AND (RESSEQ 107:118)
X-RAY DIFFRACTION
4
CHAIN A AND (RESSEQ 119:165)
X-RAY DIFFRACTION
5
CHAIN B AND (RESSEQ -1:17)
X-RAY DIFFRACTION
6
CHAIN B AND (RESSEQ 18:74)
X-RAY DIFFRACTION
7
CHAIN B AND (RESSEQ 75:105)
X-RAY DIFFRACTION
8
CHAIN B AND (RESSEQ 106:118)
X-RAY DIFFRACTION
9
CHAIN B AND (RESSEQ 119:137)
X-RAY DIFFRACTION
10
CHAIN B AND (RESSEQ 138:165)
author_and_software_defined_assembly
PISA
2
dimeric
2180
-62
16020
B
CYS
137
B
SG
CYS
139
1_555
B
HG
201
D
HG
HG
1_555
B
CYS
133
B
SG
CYS
135
1_555
136.7
B
CYS
137
B
SG
CYS
139
1_555
B
HG
201
D
HG
HG
1_555
B
ASP
134
B
O
ASP
136
1_555
75.7
B
CYS
133
B
SG
CYS
135
1_555
B
HG
201
D
HG
HG
1_555
B
ASP
134
B
O
ASP
136
1_555
108.8
A
CYS
137
A
SG
CYS
139
1_555
A
HG
201
C
HG
HG
1_555
A
ASP
134
A
O
ASP
136
1_555
101.6
A
CYS
137
A
SG
CYS
139
1_555
A
HG
201
C
HG
HG
1_555
A
CYS
133
A
SG
CYS
135
1_555
151.3
A
ASP
134
A
O
ASP
136
1_555
A
HG
201
C
HG
HG
1_555
A
CYS
133
A
SG
CYS
135
1_555
80.7
A
MSE
1
SELENOMETHIONINE
A
MSE
3
MET
A
MSE
93
SELENOMETHIONINE
A
MSE
95
MET
A
MSE
97
SELENOMETHIONINE
A
MSE
99
MET
A
MSE
146
SELENOMETHIONINE
A
MSE
148
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
3
MET
B
MSE
93
SELENOMETHIONINE
B
MSE
95
MET
B
MSE
97
SELENOMETHIONINE
B
MSE
99
MET
B
MSE
146
SELENOMETHIONINE
B
MSE
148
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
30
A
N
HIS
32
A
O
LEU
39
A
O
LEU
41
A
N
LEU
40
A
N
LEU
42
A
O
LEU
65
A
O
LEU
67
A
N
HIS
62
A
N
HIS
64
A
O
TRP
83
A
O
TRP
85
A
N
LEU
80
A
N
LEU
82
A
O
TYR
128
A
O
TYR
130
A
O
SER
125
A
O
SER
127
A
N
LEU
122
A
N
LEU
124
A
N
ILE
119
A
N
ILE
121
B
O
ILE
119
B
O
ILE
121
B
N
ILE
120
B
N
ILE
122
B
O
TRP
127
B
O
TRP
129
B
O
TYR
128
B
O
TYR
130
B
N
LEU
80
B
N
LEU
82
B
O
LEU
77
B
O
LEU
79
B
N
THR
68
B
N
THR
70
B
O
LEU
67
B
O
LEU
69
B
N
LEU
38
B
N
LEU
40
B
O
LEU
39
B
O
LEU
41
B
N
HIS
30
B
N
HIS
32
A
O
MSE
93
A
O
MSE
95
A
N
LYS
86
A
N
LYS
88
A
N
LEU
80
A
N
LEU
82
A
O
TYR
128
A
O
TYR
130
A
O
SER
125
A
O
SER
127
A
N
LEU
122
A
N
LEU
124
A
N
ILE
119
A
N
ILE
121
B
O
ILE
119
B
O
ILE
121
B
N
ILE
120
B
N
ILE
122
B
O
TRP
127
B
O
TRP
129
B
O
TYR
128
B
O
TYR
130
B
N
LEU
80
B
N
LEU
82
B
N
LYS
86
B
N
LYS
88
B
O
MSE
93
B
O
MSE
95
1
A
HOH
317
E
HOH
1
B
HOH
304
F
HOH
1
B
HOH
315
F
HOH
1
A
GLN
49
A
GLN
51
1
Y
1
A
LYS
50
A
LYS
52
1
Y
1
A
ASN
51
A
ASN
53
1
Y
1
A
THR
52
A
THR
54
1
Y
1
A
GLU
53
A
GLU
55
1
Y
1
A
ARG
54
A
ARG
56
1
Y
1
A
ILE
55
A
ILE
57
1
Y
1
A
GLU
56
A
GLU
58
1
Y
1
A
ASN
57
A
ASN
59
1
Y
1
A
LYS
58
A
LYS
60
1
Y
1
A
ASP
166
A
ASP
168
1
Y
1
A
SER
167
A
SER
169
1
Y
1
B
GLN
49
B
GLN
51
1
Y
1
B
LYS
50
B
LYS
52
1
Y
1
B
ASN
51
B
ASN
53
1
Y
1
B
THR
52
B
THR
54
1
Y
1
B
GLU
53
B
GLU
55
1
Y
1
B
ARG
54
B
ARG
56
1
Y
1
B
ILE
55
B
ILE
57
1
Y
1
B
GLU
56
B
GLU
58
1
Y
1
B
ASN
57
B
ASN
59
1
Y
1
B
LYS
58
B
LYS
60
1
Y
1
B
ASP
166
B
ASP
168
1
Y
1
B
SER
167
B
SER
169
1
Y
1
A
A
OD2
OG
ASP
SER
134
136
1.57
1
A
A
CD
OH
PRO
TYR
99
128
1.79
1
A
A
CG
CE1
PRO
TYR
99
128
1.80
1
A
A
OG1
NH1
THR
ARG
148
152
1.89
1
B
B
OG
O
SER
HOH
155
303
1.90
1
B
B
CE2
CD2
PHE
LEU
112
114
1.96
1
A
A
CG
OH
PRO
TYR
99
128
2.03
1
A
A
O
O
THR
HOH
148
306
2.03
1
B
B
OG
O
SER
HOH
147
317
2.05
1
B
B
O
O
LEU
GLN
106
109
2.08
1
B
B
CZ
CD2
PHE
LEU
112
114
2.10
1
A
A
OH
OD1
TYR
ASP
4
36
2.13
1
B
B
O
N
ASP
GLN
107
109
2.13
1
A
A
CG
CZ
PRO
TYR
99
128
2.13
1
A
A
OE1
O
GLN
HOH
5
313
2.14
1
A
A
O
O
HOH
HOH
305
310
2.16
1
A
A
GLN
GLY
109
110
-31.64
1
A
A
THR
TYR
148
149
-142.63
1
A
GLU
123
34.73
43.02
1
A
CYS
133
-171.13
-177.70
1
A
GLN
142
74.08
-7.40
1
A
ILE
158
-120.27
-62.10
1
B
GLN
18
81.15
0.61
1
B
ARG
46
-106.80
-62.67
1
B
ILE
158
-123.49
-65.01
0.7844
0.0000
-0.0000
0.7844
0.0000
-1.5688
0.2511
0.2107
0.224
2.701
27.835
1886
23056
21751
8.67
94.34
0.36
random
1,2
0.15
MAD
22.72
0.98
1.20
ML
FLAT BULK SOLVENT MODEL
50.819
0.372
2.701
27.835
36
2642
2
0
2604
0.010
2674
1.418
3636
16.726
964
0.099
402
0.007
450
0.3601
0.3160
2.7742
121
1295
13
82.00
0.3275
0.3086
2.8558
124
1360
13
86.00
0.3335
0.2662
2.9478
144
1538
13
96.00
0.2796
0.2530
3.0531
144
1550
13
98.00
0.3019
0.2412
3.1752
146
1527
13
96.00
0.2496
0.2319
3.3194
147
1504
13
94.00
0.2481
0.2129
3.4941
141
1467
13
93.00
0.2629
0.2097
3.7126
144
1544
13
95.00
0.2046
0.1779
3.9985
152
1545
13
96.00
0.1939
0.1653
4.3994
150
1569
13
97.00
0.1743
0.1482
5.0328
152
1615
13
98.00
0.2117
0.2088
6.3285
157
1643
13
99.00
0.2499
0.2386
27.8367
164
1708
13
96.00
2.701
27.835
4EBR
23338
23007
0
-3
1,2
98.58
2.7
2.75
1,2
100
data collection
HKL-2000
phasing
SOLVE
refinement
PHENIX
(phenix.refine: 1.7.3_928)
data reduction
HKL-2000
data scaling
HKL-2000
Ubiquitin-like-conjugating enzyme ATG10 (E.C.6.3.2.-)
Crystal structure of Autophagic E2, Atg10
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
PRO
3
A
PRO
5
HELX_P
A
SER
17
A
SER
19
1
1
15
A
LEU
98
A
LEU
100
HELX_P
A
ASP
107
A
ASP
109
1
2
10
A
ASP
134
A
ASP
136
HELX_P
A
ILE
138
A
ILE
140
5
3
5
A
PHE
145
A
PHE
147
HELX_P
A
THR
148
A
THR
150
5
4
4
A
TYR
149
A
TYR
151
HELX_P
A
ILE
158
A
ILE
160
1
5
10
A
ILE
158
A
ILE
160
HELX_P
A
GLY
163
A
GLY
165
1
6
6
B
PRO
3
B
PRO
5
HELX_P
B
SER
17
B
SER
19
1
7
15
B
LEU
98
B
LEU
100
HELX_P
B
VAL
108
B
VAL
110
1
8
11
B
ASP
134
B
ASP
136
HELX_P
B
ILE
138
B
ILE
140
5
9
5
B
PHE
145
B
PHE
147
HELX_P
B
SER
147
B
SER
149
5
10
3
B
THR
148
B
THR
150
HELX_P
B
ILE
158
B
ILE
160
1
11
11
covale
1.330
A
SER
0
A
C
SER
2
1_555
A
MSE
1
A
N
MSE
3
1_555
covale
1.322
A
MSE
1
A
C
MSE
3
1_555
A
ILE
2
A
N
ILE
4
1_555
covale
1.336
A
PRO
92
A
C
PRO
94
1_555
A
MSE
93
A
N
MSE
95
1_555
covale
1.328
A
MSE
93
A
C
MSE
95
1_555
A
THR
94
A
N
THR
96
1_555
covale
1.335
A
LEU
96
A
C
LEU
98
1_555
A
MSE
97
A
N
MSE
99
1_555
covale
1.330
A
MSE
97
A
C
MSE
99
1_555
A
LEU
98
A
N
LEU
100
1_555
covale
1.326
A
PHE
145
A
C
PHE
147
1_555
A
MSE
146
A
N
MSE
148
1_555
covale
1.297
A
MSE
146
A
C
MSE
148
1_555
A
SER
147
A
N
SER
149
1_555
covale
1.326
B
SER
0
B
C
SER
2
1_555
B
MSE
1
B
N
MSE
3
1_555
covale
1.316
B
MSE
1
B
C
MSE
3
1_555
B
ILE
2
B
N
ILE
4
1_555
covale
1.331
B
PRO
92
B
C
PRO
94
1_555
B
MSE
93
B
N
MSE
95
1_555
covale
1.326
B
MSE
93
B
C
MSE
95
1_555
B
THR
94
B
N
THR
96
1_555
covale
1.327
B
LEU
96
B
C
LEU
98
1_555
B
MSE
97
B
N
MSE
99
1_555
covale
1.332
B
MSE
97
B
C
MSE
99
1_555
B
LEU
98
B
N
LEU
100
1_555
covale
1.323
B
PHE
145
B
C
PHE
147
1_555
B
MSE
146
B
N
MSE
148
1_555
covale
1.329
B
MSE
146
B
C
MSE
148
1_555
B
SER
147
B
N
SER
149
1_555
metalc
2.592
B
CYS
137
B
SG
CYS
139
1_555
B
HG
201
D
HG
HG
1_555
metalc
2.609
A
CYS
137
A
SG
CYS
139
1_555
A
HG
201
C
HG
HG
1_555
metalc
2.818
A
ASP
134
A
O
ASP
136
1_555
A
HG
201
C
HG
HG
1_555
metalc
2.822
A
CYS
133
A
SG
CYS
135
1_555
A
HG
201
C
HG
HG
1_555
metalc
2.954
B
CYS
133
B
SG
CYS
135
1_555
B
HG
201
D
HG
HG
1_555
metalc
3.058
B
ASP
134
B
O
ASP
136
1_555
B
HG
201
D
HG
HG
1_555
LIGASE
E2-Conjugating enzyme, Autophagy, ligase, protein binding, Atg3, Atg5, Atg7, Atg12, Thiolation
A
GLY
110
A
GLY
112
1
A
LYS
111
A
LYS
113
-21.16
ATG10_YEAST
UNP
1
1
Q07879
MIPYQEWHSQLQSLYDSQIFHNWALCQDVHLNDEKDGLLLRLIPTRQLQKNTERIENKLLNHIELYLTYSKVYNEPLLLL
RIWEEKSIDGIPMTKLMLPTDIESLLDVQGKFQLGLDTIINLEGSVWYSFHPCDTSCIVGDQAEFMSTYLRRWVSIFIFS
WLGYEDS
1
167
4EBR
1
167
Q07879
A
1
3
169
1
167
4EBR
1
167
Q07879
B
1
3
169
1
EXPRESSION TAG
GLY
-1
4EBR
A
Q07879
UNP
1
1
EXPRESSION TAG
SER
0
4EBR
A
Q07879
UNP
2
2
EXPRESSION TAG
GLY
-1
4EBR
B
Q07879
UNP
1
2
EXPRESSION TAG
SER
0
4EBR
B
Q07879
UNP
2
12
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
CYS
26
A
CYS
28
A
LEU
31
A
LEU
33
A
LEU
38
A
LEU
40
A
LEU
42
A
LEU
44
A
ASN
61
A
ASN
63
A
SER
70
A
SER
72
A
GLU
75
A
GLU
77
A
ILE
88
A
ILE
90
A
SER
125
A
SER
127
A
SER
129
A
SER
131
A
ASP
117
A
ASP
119
A
LEU
122
A
LEU
124
B
ASP
117
B
ASP
119
B
LEU
122
B
LEU
124
B
SER
125
B
SER
127
B
SER
129
B
SER
131
B
GLU
75
B
GLU
77
B
ILE
88
B
ILE
90
B
ASN
61
B
ASN
63
B
SER
70
B
SER
72
B
LEU
38
B
LEU
40
B
LEU
42
B
LEU
44
B
CYS
26
B
CYS
28
B
LEU
31
B
LEU
33
A
ILE
91
A
ILE
93
A
LEU
96
A
LEU
98
A
GLU
75
A
GLU
77
A
ILE
88
A
ILE
90
A
SER
125
A
SER
127
A
SER
129
A
SER
131
A
ASP
117
A
ASP
119
A
LEU
122
A
LEU
124
B
ASP
117
B
ASP
119
B
LEU
122
B
LEU
124
B
SER
125
B
SER
127
B
SER
129
B
SER
131
B
GLU
75
B
GLU
77
B
ILE
88
B
ILE
90
B
ILE
91
B
ILE
93
B
LEU
96
B
LEU
98
BINDING SITE FOR RESIDUE HG A 201
Software
3
BINDING SITE FOR RESIDUE HG B 201
Software
3
A
CYS
133
A
CYS
135
3
1_555
A
ASP
134
A
ASP
136
3
1_555
A
CYS
137
A
CYS
139
3
1_555
B
CYS
133
B
CYS
135
3
1_555
B
ASP
134
B
ASP
136
3
1_555
B
CYS
137
B
CYS
139
3
1_555
178
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