0.008780
0.000000
0.000000
0.000000
0.008780
0.000000
0.000000
0.000000
0.013295
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
113.892
113.892
75.219
C10 H22 O6
238.278
PENTAETHYLENE GLYCOL
PEG400
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a putative iron-regulated protein A precursor (BDI_2603) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution
10.2210/pdb4ecg/pdb
pdb_00004ecg
100
1
double crystal monochromator
CCD
2012-01-13
MARMOSAIC 325 mm CCD
double crystal
MAD
M
x-ray
1
0.91837
1.0
0.97949
1.0
BL9-2
SSRL
0.91837,0.97949
SYNCHROTRON
SSRL BEAMLINE BL9-2
41876.543
Putative iron-regulated protein A
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
40.078
CALCIUM ION
9
syn
non-polymer
238.278
PENTAETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
114
nat
water
no
yes
GNDDPGKDPDVVTYDFKNLPADSGAKPTEDQ(MSE)SAVVATFVDEVALPTYKD(MSE)LTK(MSE)TAYKNAVDKFIAS
GSKNDLADACDAWRAVRVPWEQSEAFLFGVADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDAEDGPQNLRGF
HTAEK(MSE)LFLDGEPRDLETSPFAKNELEYLKLVSER(MSE)LSDTQDLYNGWLKGLGTSDVPSSYAEA(MSE)KKHD
GSAYSIGNVYQAIEL(MSE)LNGNNG(MSE)AGISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVESWYSWNSLDDY
KNNIVSIKNAYFGGRDLDEESASESSLHALTK(MSE)INPTLDSL(MSE)VVQIDKTIDAINAIGYPFRNNLGDTEHINT
ATEACADLTTGLGVVKSKFTN
GNDDPGKDPDVVTYDFKNLPADSGAKPTEDQMSAVVATFVDEVALPTYKDMLTKMTAYKNAVDKFIASGSKNDLADACDA
WRAVRVPWEQSEAFLFGVADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDAEDGPQNLRGFHTAEKMLFLDGE
PRDLETSPFAKNELEYLKLVSERMLSDTQDLYNGWLKGLGTSDVPSSYAEAMKKHDGSAYSIGNVYQAIELMLNGNNGMA
GISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVESWYSWNSLDDYKNNIVSIKNAYFGGRDLDEESASESSLHALTK
MINPTLDSLMVVQIDKTIDAINAIGYPFRNNLGDTEHINTATEACADLTTGLGVVKSKFTN
A
JCSG-394678
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 8503
sample
BDI_2603
435591
Parabacteroides distasonis ATCC 8503
562
Escherichia Coli
PB1
Plasmid
SpeedET
1
2.91
57.77
VAPOR DIFFUSION, SITTING DROP
7.5
40.00% polyethylene glycol 400, 0.200M calcium acetate, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
citation_author
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Database references
Database references
Derived calculations
1
0
2012-04-11
1
1
2017-11-15
1
2
2018-01-24
1
3
2023-02-01
_software.classification
_software.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2012-03-26
REL
REL
CL
CHLORIDE ION
CA
CALCIUM ION
1PE
PENTAETHYLENE GLYCOL
HOH
water
THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 24-403 OF THE TARGET SEQUENCE.
CL
500
2
CL
CL
500
A
CA
501
3
CA
CA
501
A
CA
502
3
CA
CA
502
A
CA
503
3
CA
CA
503
A
CA
504
3
CA
CA
504
A
CA
505
3
CA
CA
505
A
CA
506
3
CA
CA
506
A
CA
507
3
CA
CA
507
A
CA
508
3
CA
CA
508
A
CA
509
3
CA
CA
509
A
1PE
510
4
1PE
1PE
510
A
HOH
511
5
HOH
HOH
601
A
HOH
512
5
HOH
HOH
602
A
HOH
513
5
HOH
HOH
603
A
HOH
514
5
HOH
HOH
604
A
HOH
515
5
HOH
HOH
605
A
HOH
516
5
HOH
HOH
606
A
HOH
517
5
HOH
HOH
607
A
HOH
518
5
HOH
HOH
608
A
HOH
519
5
HOH
HOH
609
A
HOH
520
5
HOH
HOH
610
A
HOH
521
5
HOH
HOH
611
A
HOH
522
5
HOH
HOH
612
A
HOH
523
5
HOH
HOH
613
A
HOH
524
5
HOH
HOH
614
A
HOH
525
5
HOH
HOH
615
A
HOH
526
5
HOH
HOH
616
A
HOH
527
5
HOH
HOH
617
A
HOH
528
5
HOH
HOH
618
A
HOH
529
5
HOH
HOH
619
A
HOH
530
5
HOH
HOH
620
A
HOH
531
5
HOH
HOH
621
A
HOH
532
5
HOH
HOH
622
A
HOH
533
5
HOH
HOH
623
A
HOH
534
5
HOH
HOH
624
A
HOH
535
5
HOH
HOH
625
A
HOH
536
5
HOH
HOH
626
A
HOH
537
5
HOH
HOH
627
A
HOH
538
5
HOH
HOH
628
A
HOH
539
5
HOH
HOH
629
A
HOH
540
5
HOH
HOH
630
A
HOH
541
5
HOH
HOH
631
A
HOH
542
5
HOH
HOH
632
A
HOH
543
5
HOH
HOH
633
A
HOH
544
5
HOH
HOH
634
A
HOH
545
5
HOH
HOH
635
A
HOH
546
5
HOH
HOH
636
A
HOH
547
5
HOH
HOH
637
A
HOH
548
5
HOH
HOH
638
A
HOH
549
5
HOH
HOH
639
A
HOH
550
5
HOH
HOH
640
A
HOH
551
5
HOH
HOH
641
A
HOH
552
5
HOH
HOH
642
A
HOH
553
5
HOH
HOH
643
A
HOH
554
5
HOH
HOH
644
A
HOH
555
5
HOH
HOH
645
A
HOH
556
5
HOH
HOH
646
A
HOH
557
5
HOH
HOH
647
A
HOH
558
5
HOH
HOH
648
A
HOH
559
5
HOH
HOH
649
A
HOH
560
5
HOH
HOH
650
A
HOH
561
5
HOH
HOH
651
A
HOH
562
5
HOH
HOH
652
A
HOH
563
5
HOH
HOH
653
A
HOH
564
5
HOH
HOH
654
A
HOH
565
5
HOH
HOH
655
A
HOH
566
5
HOH
HOH
656
A
HOH
567
5
HOH
HOH
657
A
HOH
568
5
HOH
HOH
658
A
HOH
569
5
HOH
HOH
659
A
HOH
570
5
HOH
HOH
660
A
HOH
571
5
HOH
HOH
661
A
HOH
572
5
HOH
HOH
662
A
HOH
573
5
HOH
HOH
663
A
HOH
574
5
HOH
HOH
664
A
HOH
575
5
HOH
HOH
665
A
HOH
576
5
HOH
HOH
666
A
HOH
577
5
HOH
HOH
667
A
HOH
578
5
HOH
HOH
668
A
HOH
579
5
HOH
HOH
669
A
HOH
580
5
HOH
HOH
670
A
HOH
581
5
HOH
HOH
671
A
HOH
582
5
HOH
HOH
672
A
HOH
583
5
HOH
HOH
673
A
HOH
584
5
HOH
HOH
674
A
HOH
585
5
HOH
HOH
675
A
HOH
586
5
HOH
HOH
676
A
HOH
587
5
HOH
HOH
677
A
HOH
588
5
HOH
HOH
678
A
HOH
589
5
HOH
HOH
679
A
HOH
590
5
HOH
HOH
680
A
HOH
591
5
HOH
HOH
681
A
HOH
592
5
HOH
HOH
682
A
HOH
593
5
HOH
HOH
683
A
HOH
594
5
HOH
HOH
684
A
HOH
595
5
HOH
HOH
685
A
HOH
596
5
HOH
HOH
686
A
HOH
597
5
HOH
HOH
687
A
HOH
598
5
HOH
HOH
688
A
HOH
599
5
HOH
HOH
689
A
HOH
600
5
HOH
HOH
690
A
HOH
601
5
HOH
HOH
691
A
HOH
602
5
HOH
HOH
692
A
HOH
603
5
HOH
HOH
693
A
HOH
604
5
HOH
HOH
694
A
HOH
605
5
HOH
HOH
695
A
HOH
606
5
HOH
HOH
696
A
HOH
607
5
HOH
HOH
697
A
HOH
608
5
HOH
HOH
698
A
HOH
609
5
HOH
HOH
699
A
HOH
610
5
HOH
HOH
700
A
HOH
611
5
HOH
HOH
701
A
HOH
612
5
HOH
HOH
702
A
HOH
613
5
HOH
HOH
703
A
HOH
614
5
HOH
HOH
704
A
HOH
615
5
HOH
HOH
705
A
HOH
616
5
HOH
HOH
706
A
HOH
617
5
HOH
HOH
707
A
HOH
618
5
HOH
HOH
708
A
HOH
619
5
HOH
HOH
709
A
HOH
620
5
HOH
HOH
710
A
HOH
621
5
HOH
HOH
711
A
HOH
622
5
HOH
HOH
712
A
HOH
623
5
HOH
HOH
713
A
HOH
624
5
HOH
HOH
714
A
n
1
0
A
n
2
24
A
n
3
25
A
n
4
26
A
n
5
27
A
n
6
28
A
n
7
29
A
n
8
30
A
n
9
31
A
n
10
32
A
n
11
33
A
n
12
34
A
THR
35
n
13
THR
35
A
TYR
36
n
14
TYR
36
A
ASP
37
n
15
ASP
37
A
PHE
38
n
16
PHE
38
A
LYS
39
n
17
LYS
39
A
ASN
40
n
18
ASN
40
A
LEU
41
n
19
LEU
41
A
PRO
42
n
20
PRO
42
A
ALA
43
n
21
ALA
43
A
ASP
44
n
22
ASP
44
A
SER
45
n
23
SER
45
A
GLY
46
n
24
GLY
46
A
ALA
47
n
25
ALA
47
A
LYS
48
n
26
LYS
48
A
PRO
49
n
27
PRO
49
A
THR
50
n
28
THR
50
A
GLU
51
n
29
GLU
51
A
ASP
52
n
30
ASP
52
A
GLN
53
n
31
GLN
53
A
MSE
54
n
32
MSE
54
A
SER
55
n
33
SER
55
A
ALA
56
n
34
ALA
56
A
VAL
57
n
35
VAL
57
A
VAL
58
n
36
VAL
58
A
ALA
59
n
37
ALA
59
A
THR
60
n
38
THR
60
A
PHE
61
n
39
PHE
61
A
VAL
62
n
40
VAL
62
A
ASP
63
n
41
ASP
63
A
GLU
64
n
42
GLU
64
A
VAL
65
n
43
VAL
65
A
ALA
66
n
44
ALA
66
A
LEU
67
n
45
LEU
67
A
PRO
68
n
46
PRO
68
A
THR
69
n
47
THR
69
A
TYR
70
n
48
TYR
70
A
LYS
71
n
49
LYS
71
A
ASP
72
n
50
ASP
72
A
MSE
73
n
51
MSE
73
A
LEU
74
n
52
LEU
74
A
THR
75
n
53
THR
75
A
LYS
76
n
54
LYS
76
A
MSE
77
n
55
MSE
77
A
THR
78
n
56
THR
78
A
ALA
79
n
57
ALA
79
A
TYR
80
n
58
TYR
80
A
LYS
81
n
59
LYS
81
A
ASN
82
n
60
ASN
82
A
ALA
83
n
61
ALA
83
A
VAL
84
n
62
VAL
84
A
ASP
85
n
63
ASP
85
A
LYS
86
n
64
LYS
86
A
PHE
87
n
65
PHE
87
A
ILE
88
n
66
ILE
88
A
ALA
89
n
67
ALA
89
A
SER
90
n
68
SER
90
A
GLY
91
n
69
GLY
91
A
SER
92
n
70
SER
92
A
LYS
93
n
71
LYS
93
A
ASN
94
n
72
ASN
94
A
ASP
95
n
73
ASP
95
A
LEU
96
n
74
LEU
96
A
ALA
97
n
75
ALA
97
A
ASP
98
n
76
ASP
98
A
ALA
99
n
77
ALA
99
A
CYS
100
n
78
CYS
100
A
ASP
101
n
79
ASP
101
A
ALA
102
n
80
ALA
102
A
TRP
103
n
81
TRP
103
A
ARG
104
n
82
ARG
104
A
ALA
105
n
83
ALA
105
A
VAL
106
n
84
VAL
106
A
ARG
107
n
85
ARG
107
A
VAL
108
n
86
VAL
108
A
PRO
109
n
87
PRO
109
A
TRP
110
n
88
TRP
110
A
GLU
111
n
89
GLU
111
A
GLN
112
n
90
GLN
112
A
SER
113
n
91
SER
113
A
GLU
114
n
92
GLU
114
A
ALA
115
n
93
ALA
115
A
PHE
116
n
94
PHE
116
A
LEU
117
n
95
LEU
117
A
PHE
118
n
96
PHE
118
A
GLY
119
n
97
GLY
119
A
VAL
120
n
98
VAL
120
A
ALA
121
n
99
ALA
121
A
ASP
122
n
100
ASP
122
A
LEU
123
n
101
LEU
123
A
ALA
124
n
102
ALA
124
A
GLN
125
n
103
GLN
125
A
LEU
126
n
104
LEU
126
A
ASP
127
n
105
ASP
127
A
PRO
128
n
106
PRO
128
A
SER
129
n
107
SER
129
A
LEU
130
n
108
LEU
130
A
ASP
131
n
109
ASP
131
A
SER
132
n
110
SER
132
A
TRP
133
n
111
TRP
133
A
PRO
134
n
112
PRO
134
A
LEU
135
n
113
LEU
135
A
ASP
136
n
114
ASP
136
A
LYS
137
n
115
LYS
137
A
ASN
138
n
116
ASN
138
A
GLY
139
n
117
GLY
139
A
ILE
140
n
118
ILE
140
A
GLU
141
n
119
GLU
141
A
GLU
142
n
120
GLU
142
A
ILE
143
n
121
ILE
143
A
ILE
144
n
122
ILE
144
A
ALA
145
n
123
ALA
145
A
THR
146
n
124
THR
146
A
GLY
147
n
125
GLY
147
A
GLU
148
n
126
GLU
148
A
PHE
149
n
127
PHE
149
A
SER
150
n
128
SER
150
A
LYS
151
n
129
LYS
151
A
ILE
152
n
130
ILE
152
A
SER
153
n
131
SER
153
A
GLY
154
n
132
GLY
154
A
ALA
155
n
133
ALA
155
A
VAL
156
n
134
VAL
156
A
ASP
157
n
135
ASP
157
A
GLU
158
n
136
GLU
158
A
ASP
159
n
137
ASP
159
A
ALA
160
n
138
ALA
160
A
GLU
161
n
139
GLU
161
A
ASP
162
n
140
ASP
162
A
GLY
163
n
141
GLY
163
A
PRO
164
n
142
PRO
164
A
GLN
165
n
143
GLN
165
A
ASN
166
n
144
ASN
166
A
LEU
167
n
145
LEU
167
A
ARG
168
n
146
ARG
168
A
GLY
169
n
147
GLY
169
A
PHE
170
n
148
PHE
170
A
HIS
171
n
149
HIS
171
A
THR
172
n
150
THR
172
A
ALA
173
n
151
ALA
173
A
GLU
174
n
152
GLU
174
A
LYS
175
n
153
LYS
175
A
MSE
176
n
154
MSE
176
A
LEU
177
n
155
LEU
177
A
PHE
178
n
156
PHE
178
A
LEU
179
n
157
LEU
179
A
ASP
180
n
158
ASP
180
A
GLY
181
n
159
GLY
181
A
GLU
182
n
160
GLU
182
A
PRO
183
n
161
PRO
183
A
ARG
184
n
162
ARG
184
A
ASP
185
n
163
ASP
185
A
LEU
186
n
164
LEU
186
A
GLU
187
n
165
GLU
187
A
THR
188
n
166
THR
188
A
SER
189
n
167
SER
189
A
PRO
190
n
168
PRO
190
A
PHE
191
n
169
PHE
191
A
ALA
192
n
170
ALA
192
A
LYS
193
n
171
LYS
193
A
ASN
194
n
172
ASN
194
A
GLU
195
n
173
GLU
195
A
LEU
196
n
174
LEU
196
A
GLU
197
n
175
GLU
197
A
TYR
198
n
176
TYR
198
A
LEU
199
n
177
LEU
199
A
LYS
200
n
178
LYS
200
A
LEU
201
n
179
LEU
201
A
VAL
202
n
180
VAL
202
A
SER
203
n
181
SER
203
A
GLU
204
n
182
GLU
204
A
ARG
205
n
183
ARG
205
A
MSE
206
n
184
MSE
206
A
LEU
207
n
185
LEU
207
A
SER
208
n
186
SER
208
A
ASP
209
n
187
ASP
209
A
THR
210
n
188
THR
210
A
GLN
211
n
189
GLN
211
A
ASP
212
n
190
ASP
212
A
LEU
213
n
191
LEU
213
A
TYR
214
n
192
TYR
214
A
ASN
215
n
193
ASN
215
A
GLY
216
n
194
GLY
216
A
TRP
217
n
195
TRP
217
A
LEU
218
n
196
LEU
218
A
LYS
219
n
197
LYS
219
A
GLY
220
n
198
GLY
220
A
LEU
221
n
199
LEU
221
A
GLY
222
n
200
GLY
222
A
THR
223
n
201
THR
223
A
SER
224
n
202
SER
224
A
ASP
225
n
203
ASP
225
A
VAL
226
n
204
VAL
226
A
PRO
227
n
205
PRO
227
A
SER
228
n
206
SER
228
A
SER
229
n
207
SER
229
A
TYR
230
n
208
TYR
230
A
ALA
231
n
209
ALA
231
A
GLU
232
n
210
GLU
232
A
ALA
233
n
211
ALA
233
A
MSE
234
n
212
MSE
234
A
LYS
235
n
213
LYS
235
A
LYS
236
n
214
LYS
236
A
HIS
237
n
215
HIS
237
A
ASP
238
n
216
ASP
238
A
GLY
239
n
217
GLY
239
A
SER
240
n
218
SER
240
A
ALA
241
n
219
ALA
241
A
TYR
242
n
220
TYR
242
A
SER
243
n
221
SER
243
A
ILE
244
n
222
ILE
244
A
GLY
245
n
223
GLY
245
A
ASN
246
n
224
ASN
246
A
VAL
247
n
225
VAL
247
A
TYR
248
n
226
TYR
248
A
GLN
249
n
227
GLN
249
A
ALA
250
n
228
ALA
250
A
ILE
251
n
229
ILE
251
A
GLU
252
n
230
GLU
252
A
LEU
253
n
231
LEU
253
A
MSE
254
n
232
MSE
254
A
LEU
255
n
233
LEU
255
A
ASN
256
n
234
ASN
256
A
GLY
257
n
235
GLY
257
A
ASN
258
n
236
ASN
258
A
ASN
259
n
237
ASN
259
A
GLY
260
n
238
GLY
260
A
MSE
261
n
239
MSE
261
A
ALA
262
n
240
ALA
262
A
GLY
263
n
241
GLY
263
A
ILE
264
n
242
ILE
264
A
SER
265
n
243
SER
265
A
ASN
266
n
244
ASN
266
A
GLU
267
n
245
GLU
267
A
VAL
268
n
246
VAL
268
A
GLY
269
n
247
GLY
269
A
SER
270
n
248
SER
270
A
ALA
271
n
249
ALA
271
A
LYS
272
n
250
LYS
272
A
ILE
273
n
251
ILE
273
A
THR
274
n
252
THR
274
A
ASP
275
n
253
ASP
275
A
PRO
276
n
254
PRO
276
A
VAL
277
n
255
VAL
277
A
THR
278
n
256
THR
278
A
ALA
279
n
257
ALA
279
A
TRP
280
n
258
TRP
280
A
ASN
281
n
259
ASN
281
A
GLY
282
n
260
GLY
282
A
SER
283
n
261
SER
283
A
ASN
284
n
262
ASN
284
A
LYS
285
n
263
LYS
285
A
ASP
286
n
264
ASP
286
A
ALA
287
n
265
ALA
287
A
THR
288
n
266
THR
288
A
ASP
289
n
267
ASP
289
A
PRO
290
n
268
PRO
290
A
ASN
291
n
269
ASN
291
A
ASN
292
n
270
ASN
292
A
PRO
293
n
271
PRO
293
A
GLY
294
n
272
GLY
294
A
VAL
295
n
273
VAL
295
A
LEU
296
n
274
LEU
296
A
ALA
297
n
275
ALA
297
A
VAL
298
n
276
VAL
298
A
GLU
299
n
277
GLU
299
A
SER
300
n
278
SER
300
A
TRP
301
n
279
TRP
301
A
TYR
302
n
280
TYR
302
A
SER
303
n
281
SER
303
A
TRP
304
n
282
TRP
304
A
ASN
305
n
283
ASN
305
A
SER
306
n
284
SER
306
A
LEU
307
n
285
LEU
307
A
ASP
308
n
286
ASP
308
A
ASP
309
n
287
ASP
309
A
TYR
310
n
288
TYR
310
A
LYS
311
n
289
LYS
311
A
ASN
312
n
290
ASN
312
A
ASN
313
n
291
ASN
313
A
ILE
314
n
292
ILE
314
A
VAL
315
n
293
VAL
315
A
SER
316
n
294
SER
316
A
ILE
317
n
295
ILE
317
A
LYS
318
n
296
LYS
318
A
ASN
319
n
297
ASN
319
A
ALA
320
n
298
ALA
320
A
TYR
321
n
299
TYR
321
A
PHE
322
n
300
PHE
322
A
GLY
323
n
301
GLY
323
A
GLY
324
n
302
GLY
324
A
ARG
325
n
303
ARG
325
A
ASP
326
n
304
ASP
326
A
LEU
327
n
305
LEU
327
A
ASP
328
n
306
ASP
328
A
GLU
329
n
307
GLU
329
A
GLU
330
n
308
GLU
330
A
SER
331
n
309
SER
331
A
ALA
332
n
310
ALA
332
A
SER
333
n
311
SER
333
A
GLU
334
n
312
GLU
334
A
SER
335
n
313
SER
335
A
SER
336
n
314
SER
336
A
LEU
337
n
315
LEU
337
A
HIS
338
n
316
HIS
338
A
ALA
339
n
317
ALA
339
A
LEU
340
n
318
LEU
340
A
THR
341
n
319
THR
341
A
LYS
342
n
320
LYS
342
A
MSE
343
n
321
MSE
343
A
ILE
344
n
322
ILE
344
A
ASN
345
n
323
ASN
345
A
PRO
346
n
324
PRO
346
A
THR
347
n
325
THR
347
A
LEU
348
n
326
LEU
348
A
ASP
349
n
327
ASP
349
A
SER
350
n
328
SER
350
A
LEU
351
n
329
LEU
351
A
MSE
352
n
330
MSE
352
A
VAL
353
n
331
VAL
353
A
VAL
354
n
332
VAL
354
A
GLN
355
n
333
GLN
355
A
ILE
356
n
334
ILE
356
A
ASP
357
n
335
ASP
357
A
LYS
358
n
336
LYS
358
A
THR
359
n
337
THR
359
A
ILE
360
n
338
ILE
360
A
ASP
361
n
339
ASP
361
A
ALA
362
n
340
ALA
362
A
ILE
363
n
341
ILE
363
A
ASN
364
n
342
ASN
364
A
ALA
365
n
343
ALA
365
A
ILE
366
n
344
ILE
366
A
GLY
367
n
345
GLY
367
A
TYR
368
n
346
TYR
368
A
PRO
369
n
347
PRO
369
A
PHE
370
n
348
PHE
370
A
ARG
371
n
349
ARG
371
A
ASN
372
n
350
ASN
372
A
ASN
373
n
351
ASN
373
A
LEU
374
n
352
LEU
374
A
GLY
375
n
353
GLY
375
A
ASP
376
n
354
ASP
376
A
THR
377
n
355
THR
377
A
GLU
378
n
356
GLU
378
A
HIS
379
n
357
HIS
379
A
ILE
380
n
358
ILE
380
A
ASN
381
n
359
ASN
381
A
THR
382
n
360
THR
382
A
ALA
383
n
361
ALA
383
A
THR
384
n
362
THR
384
A
GLU
385
n
363
GLU
385
A
ALA
386
n
364
ALA
386
A
CYS
387
n
365
CYS
387
A
ALA
388
n
366
ALA
388
A
ASP
389
n
367
ASP
389
A
LEU
390
n
368
LEU
390
A
THR
391
n
369
THR
391
A
THR
392
n
370
THR
392
A
GLY
393
n
371
GLY
393
A
LEU
394
n
372
LEU
394
A
GLY
395
n
373
GLY
395
A
VAL
396
n
374
VAL
396
A
VAL
397
n
375
VAL
397
A
LYS
398
n
376
LYS
398
A
SER
399
n
377
SER
399
A
LYS
400
n
378
LYS
400
A
PHE
401
n
379
PHE
401
A
THR
402
n
380
THR
402
A
n
381
403
A
1.6260
0.3090
-0.0060
1.8716
0.4868
0.5646
0.1774
-0.0891
-0.2982
0.0537
-0.0663
-0.0822
-0.0104
-0.0928
-0.1111
0.0467
0.0021
-0.0685
0.0491
0.0452
0.1603
refined
96.6520
3.7100
5.9930
X-RAY DIFFRACTION
A
35
A
402
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
A
GLU
114
A
OE2
GLU
92
1_555
A
CA
504
F
CA
CA
1_555
A
ASP
131
A
OD2
ASP
109
1_555
101.8
A
GLU
114
A
OE2
GLU
92
1_555
A
CA
504
F
CA
CA
1_555
A
GLU
299
A
OE2
GLU
277
1_555
166.8
A
ASP
131
A
OD2
ASP
109
1_555
A
CA
504
F
CA
CA
1_555
A
GLU
299
A
OE2
GLU
277
1_555
81.7
A
GLU
114
A
OE2
GLU
92
1_555
A
CA
504
F
CA
CA
1_555
A
HOH
616
M
O
HOH
1_555
110.6
A
ASP
131
A
OD2
ASP
109
1_555
A
CA
504
F
CA
CA
1_555
A
HOH
616
M
O
HOH
1_555
119.9
A
GLU
299
A
OE2
GLU
277
1_555
A
CA
504
F
CA
CA
1_555
A
HOH
616
M
O
HOH
1_555
57.5
A
TRP
133
A
O
TRP
111
1_555
A
CA
509
K
CA
CA
1_555
A
HOH
708
M
O
HOH
1_555
67.6
A
TRP
133
A
O
TRP
111
1_555
A
CA
509
K
CA
CA
1_555
A
HOH
709
M
O
HOH
1_555
74.8
A
HOH
708
M
O
HOH
1_555
A
CA
509
K
CA
CA
1_555
A
HOH
709
M
O
HOH
1_555
79.9
A
TRP
133
A
O
TRP
111
1_555
A
CA
509
K
CA
CA
1_555
A
HOH
710
M
O
HOH
1_555
86.9
A
HOH
708
M
O
HOH
1_555
A
CA
509
K
CA
CA
1_555
A
HOH
710
M
O
HOH
1_555
139.5
A
HOH
709
M
O
HOH
1_555
A
CA
509
K
CA
CA
1_555
A
HOH
710
M
O
HOH
1_555
124.5
A
ASP
157
A
OD1
ASP
135
1_555
A
CA
505
G
CA
CA
1_555
A
ASP
159
A
OD1
ASP
137
1_555
64.1
A
ASP
157
A
OD1
ASP
135
1_555
A
CA
505
G
CA
CA
1_555
A
HOH
680
M
O
HOH
1_555
88.0
A
ASP
159
A
OD1
ASP
137
1_555
A
CA
505
G
CA
CA
1_555
A
HOH
680
M
O
HOH
1_555
60.0
A
ASP
157
A
OD1
ASP
135
1_555
A
CA
505
G
CA
CA
1_555
A
HOH
692
M
O
HOH
1_555
70.3
A
ASP
159
A
OD1
ASP
137
1_555
A
CA
505
G
CA
CA
1_555
A
HOH
692
M
O
HOH
1_555
69.6
A
HOH
680
M
O
HOH
1_555
A
CA
505
G
CA
CA
1_555
A
HOH
692
M
O
HOH
1_555
129.5
A
GLU
182
A
OE1
GLU
160
1_555
A
CA
507
I
CA
CA
1_555
A
HOH
617
M
O
HOH
1_555
76.8
A
GLU
182
A
OE1
GLU
160
1_555
A
CA
507
I
CA
CA
1_555
A
HOH
700
M
O
HOH
1_555
72.7
A
HOH
617
M
O
HOH
1_555
A
CA
507
I
CA
CA
1_555
A
HOH
700
M
O
HOH
1_555
62.5
A
GLU
182
A
OE1
GLU
160
1_555
A
CA
507
I
CA
CA
1_555
A
HOH
701
M
O
HOH
1_555
172.0
A
HOH
617
M
O
HOH
1_555
A
CA
507
I
CA
CA
1_555
A
HOH
701
M
O
HOH
1_555
101.5
A
HOH
700
M
O
HOH
1_555
A
CA
507
I
CA
CA
1_555
A
HOH
701
M
O
HOH
1_555
99.6
A
GLU
182
A
OE2
GLU
160
1_555
A
CA
508
J
CA
CA
1_555
A
HOH
711
M
O
HOH
1_555
124.5
A
GLU
182
A
OE2
GLU
160
1_555
A
CA
508
J
CA
CA
1_555
A
HOH
712
M
O
HOH
1_555
97.1
A
HOH
711
M
O
HOH
1_555
A
CA
508
J
CA
CA
1_555
A
HOH
712
M
O
HOH
1_555
119.9
A
GLU
182
A
OE2
GLU
160
1_555
A
CA
508
J
CA
CA
1_555
A
HOH
713
M
O
HOH
1_555
76.7
A
HOH
711
M
O
HOH
1_555
A
CA
508
J
CA
CA
1_555
A
HOH
713
M
O
HOH
1_555
116.9
A
HOH
712
M
O
HOH
1_555
A
CA
508
J
CA
CA
1_555
A
HOH
713
M
O
HOH
1_555
113.2
A
ASP
185
A
OD1
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
ASP
185
A
OD2
ASP
163
1_555
50.0
A
ASP
185
A
OD1
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
GLU
187
A
OE1
GLU
165
1_555
107.5
A
ASP
185
A
OD2
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
GLU
187
A
OE1
GLU
165
1_555
83.1
A
ASP
185
A
OD1
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
624
M
O
HOH
1_555
88.4
A
ASP
185
A
OD2
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
624
M
O
HOH
1_555
52.9
A
GLU
187
A
OE1
GLU
165
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
624
M
O
HOH
1_555
104.5
A
ASP
185
A
OD1
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
689
M
O
HOH
1_555
175.4
A
ASP
185
A
OD2
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
689
M
O
HOH
1_555
132.9
A
GLU
187
A
OE1
GLU
165
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
689
M
O
HOH
1_555
77.0
A
HOH
624
M
O
HOH
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
689
M
O
HOH
1_555
91.6
A
ASP
185
A
OD1
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
690
M
O
HOH
1_555
85.2
A
ASP
185
A
OD2
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
690
M
O
HOH
1_555
126.4
A
GLU
187
A
OE1
GLU
165
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
690
M
O
HOH
1_555
85.2
A
HOH
624
M
O
HOH
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
690
M
O
HOH
1_555
169.6
A
HOH
689
M
O
HOH
1_555
A
CA
502
D
CA
CA
1_555
A
HOH
690
M
O
HOH
1_555
94.2
A
SER
243
A
O
SER
221
1_555
A
CA
501
C
CA
CA
1_555
A
GLN
249
A
OE1
GLN
227
1_555
87.8
A
SER
243
A
O
SER
221
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
676
M
O
HOH
1_555
94.7
A
GLN
249
A
OE1
GLN
227
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
676
M
O
HOH
1_555
177.1
A
SER
243
A
O
SER
221
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
678
M
O
HOH
1_555
143.8
A
GLN
249
A
OE1
GLN
227
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
678
M
O
HOH
1_555
83.3
A
HOH
676
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
678
M
O
HOH
1_555
95.6
A
SER
243
A
O
SER
221
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
679
M
O
HOH
1_555
70.2
A
GLN
249
A
OE1
GLN
227
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
679
M
O
HOH
1_555
88.7
A
HOH
676
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
679
M
O
HOH
1_555
90.7
A
HOH
678
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
679
M
O
HOH
1_555
144.1
A
SER
243
A
O
SER
221
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
686
M
O
HOH
1_555
143.6
A
GLN
249
A
OE1
GLN
227
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
686
M
O
HOH
1_555
94.1
A
HOH
676
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
686
M
O
HOH
1_555
83.1
A
HOH
678
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
686
M
O
HOH
1_555
72.3
A
HOH
679
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
686
M
O
HOH
1_555
73.4
A
SER
243
A
O
SER
221
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
688
M
O
HOH
1_555
73.1
A
GLN
249
A
OE1
GLN
227
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
688
M
O
HOH
1_555
95.6
A
HOH
676
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
688
M
O
HOH
1_555
86.6
A
HOH
678
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
688
M
O
HOH
1_555
73.0
A
HOH
679
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
688
M
O
HOH
1_555
142.9
A
HOH
686
M
O
HOH
1_555
A
CA
501
C
CA
CA
1_555
A
HOH
688
M
O
HOH
1_555
142.4
A
SER
270
A
O
SER
248
1_555
A
CA
506
H
CA
CA
1_555
A
ASP
275
A
OD1
ASP
253
1_555
77.8
A
SER
270
A
O
SER
248
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
670
M
O
HOH
1_555
94.6
A
ASP
275
A
OD1
ASP
253
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
670
M
O
HOH
1_555
107.0
A
SER
270
A
O
SER
248
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
671
M
O
HOH
1_555
148.8
A
ASP
275
A
OD1
ASP
253
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
671
M
O
HOH
1_555
80.0
A
HOH
670
M
O
HOH
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
671
M
O
HOH
1_555
71.4
A
SER
270
A
O
SER
248
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
672
M
O
HOH
1_555
106.2
A
ASP
275
A
OD1
ASP
253
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
672
M
O
HOH
1_555
172.4
A
HOH
670
M
O
HOH
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
672
M
O
HOH
1_555
79.4
A
HOH
671
M
O
HOH
1_555
A
CA
506
H
CA
CA
1_555
A
HOH
672
M
O
HOH
1_555
98.6
A
HOH
673
M
O
HOH
1_555
A
CA
503
E
CA
CA
1_555
A
HOH
674
M
O
HOH
1_555
81.3
A
HOH
673
M
O
HOH
1_555
A
CA
503
E
CA
CA
1_555
A
HOH
691
M
O
HOH
1_555
74.2
A
HOH
674
M
O
HOH
1_555
A
CA
503
E
CA
CA
1_555
A
HOH
691
M
O
HOH
1_555
62.9
A
MSE
54
SELENOMETHIONINE
A
MSE
32
MET
A
MSE
73
SELENOMETHIONINE
A
MSE
51
MET
A
MSE
77
SELENOMETHIONINE
A
MSE
55
MET
A
MSE
176
SELENOMETHIONINE
A
MSE
154
MET
A
MSE
206
SELENOMETHIONINE
A
MSE
184
MET
A
MSE
234
SELENOMETHIONINE
A
MSE
212
MET
A
MSE
254
SELENOMETHIONINE
A
MSE
232
MET
A
MSE
261
SELENOMETHIONINE
A
MSE
239
MET
A
MSE
343
SELENOMETHIONINE
A
MSE
321
MET
A
MSE
352
SELENOMETHIONINE
A
MSE
330
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
179
A
N
LEU
157
A
O
GLU
182
A
O
GLU
160
1
A
HOH
655
M
HOH
1
A
GLY
0
A
GLY
1
1
Y
1
A
ASN
24
A
ASN
2
1
Y
1
A
ASP
25
A
ASP
3
1
Y
1
A
ASP
26
A
ASP
4
1
Y
1
A
PRO
27
A
PRO
5
1
Y
1
A
GLY
28
A
GLY
6
1
Y
1
A
LYS
29
A
LYS
7
1
Y
1
A
ASP
30
A
ASP
8
1
Y
1
A
PRO
31
A
PRO
9
1
Y
1
A
ASP
32
A
ASP
10
1
Y
1
A
VAL
33
A
VAL
11
1
Y
1
A
VAL
34
A
VAL
12
1
Y
1
A
ASN
403
A
ASN
381
1
Y
1
14.05
2.30
111.70
125.75
A
A
A
CD
CE
NZ
LYS
LYS
LYS
193
193
193
N
1
6.11
0.90
118.30
124.41
A
A
A
CB
CG
OD1
ASP
ASP
ASP
361
361
361
N
1
A
A
CG
CD2
HIS
HIS
237
237
0.055
0.009
1.354
1.409
N
1
A
ALA
66
-60.12
-71.39
1
A
GLN
112
-69.33
4.97
1
A
ASP
131
-157.89
44.42
1
A
ASP
180
33.19
55.74
1
A
LYS
219
-140.62
-0.39
1
A
HIS
237
33.78
49.92
1
A
ASN
259
-145.22
17.79
1
A
ALA
271
-103.29
-60.18
1
A
SER
331
-140.26
14.64
1
A
PHE
401
-149.88
29.73
129.420
55.4796
34.300
-1.4000
0.0000
0.0000
-1.4000
0.0000
2.8100
0.9710
0.9640
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. CALCIUM (CA) AND PEG400 (1PE) FROM THE CRYSTALLIZATION SOLUTION ARE MODELED.
0.1927
0.1617
0.1632
2.3000
29.124
1097
21391
5.1000
99.4500
1.000
0.500
11.1600
0.1340
RANDOM
1
THROUGHOUT
0.000
MAD
0.2240
0.1720
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
2.3000
29.124
114
2955
26
0
2815
0.017
0.020
2886
0.002
0.020
1883
1.697
1.959
3916
1.037
3.000
4637
6.147
5.000
367
35.318
26.288
132
15.491
15.000
473
12.948
15.000
7
0.095
0.200
435
0.008
0.021
3253
0.001
0.020
538
0.3150
0.2650
2.3590
87
1430
1517
20
98.7600
52.286
2.30
29.124
4ECG
21402
-3.000
0.044
1
11.970
98.100
0.486
2.300
2.380
1.8
8379
3936
1
96.400
0.344
2.380
2.480
2.5
9596
4452
1
99.300
0.271
2.480
2.590
3.3
8742
4038
1
99.300
0.185
2.590
2.730
4.7
9134
4223
1
99.000
0.132
2.730
2.900
6.4
8996
4148
1
99.200
0.084
2.900
3.120
9.8
8916
4105
1
99.100
0.053
3.120
3.430
14.5
8930
4124
1
98.100
0.034
3.430
3.930
21.2
8951
4123
1
97.100
0.027
3.930
4.930
26.8
8690
4025
1
96.800
0.022
4.930
29.3
8876
4104
1
96.100
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
December 29, 2011
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0117
data reduction
XDS
phasing
SHELXD
Crystal structure of a putative iron-regulated protein A precursor (BDI_2603) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.
A
THR
50
A
THR
28
HELX_P
A
VAL
65
A
VAL
43
1
1
16
A
VAL
65
A
VAL
43
HELX_P
A
GLY
91
A
GLY
69
1
2
27
A
SER
92
A
SER
70
HELX_P
A
GLN
112
A
GLN
90
1
3
21
A
SER
113
A
SER
91
HELX_P
A
LEU
117
A
LEU
95
5
4
5
A
GLY
119
A
GLY
97
HELX_P
A
ALA
124
A
ALA
102
1
5
6
A
GLN
125
A
GLN
103
HELX_P
A
SER
132
A
SER
110
1
6
8
A
ASP
136
A
ASP
114
HELX_P
A
GLY
147
A
GLY
125
1
7
12
A
GLU
148
A
GLU
126
HELX_P
A
SER
153
A
SER
131
5
8
6
A
GLY
163
A
GLY
141
HELX_P
A
LEU
167
A
LEU
145
5
9
5
A
ARG
168
A
ARG
146
HELX_P
A
LEU
177
A
LEU
155
1
10
10
A
ALA
192
A
ALA
170
HELX_P
A
LYS
219
A
LYS
197
1
11
28
A
SER
229
A
SER
207
HELX_P
A
HIS
237
A
HIS
215
1
12
9
A
ASN
246
A
ASN
224
HELX_P
A
ASN
256
A
ASN
234
1
13
11
A
GLY
260
A
GLY
238
HELX_P
A
ALA
271
A
ALA
249
1
14
12
A
ILE
273
A
ILE
251
HELX_P
A
GLY
282
A
GLY
260
1
15
10
A
ASN
292
A
ASN
270
HELX_P
A
VAL
298
A
VAL
276
1
16
7
A
ASN
305
A
ASN
283
HELX_P
A
GLY
323
A
GLY
301
1
17
19
A
ASP
328
A
ASP
306
HELX_P
A
ALA
332
A
ALA
310
5
18
5
A
SER
336
A
SER
314
HELX_P
A
ASN
345
A
ASN
323
1
19
10
A
ASN
345
A
ASN
323
HELX_P
A
ILE
366
A
ILE
344
1
20
22
A
PRO
369
A
PRO
347
HELX_P
A
ASN
373
A
ASN
351
5
21
5
A
ASP
376
A
ASP
354
HELX_P
A
LYS
400
A
LYS
378
1
22
25
covale
1.325
both
A
GLN
53
A
C
GLN
31
1_555
A
MSE
54
A
N
MSE
32
1_555
covale
1.336
both
A
MSE
54
A
C
MSE
32
1_555
A
SER
55
A
N
SER
33
1_555
covale
1.331
both
A
ASP
72
A
C
ASP
50
1_555
A
MSE
73
A
N
MSE
51
1_555
covale
1.337
both
A
MSE
73
A
C
MSE
51
1_555
A
LEU
74
A
N
LEU
52
1_555
covale
1.343
both
A
LYS
76
A
C
LYS
54
1_555
A
MSE
77
A
N
MSE
55
1_555
covale
1.303
both
A
MSE
77
A
C
MSE
55
1_555
A
THR
78
A
N
THR
56
1_555
covale
1.330
both
A
LYS
175
A
C
LYS
153
1_555
A
MSE
176
A
N
MSE
154
1_555
covale
1.334
both
A
MSE
176
A
C
MSE
154
1_555
A
LEU
177
A
N
LEU
155
1_555
covale
1.338
both
A
ARG
205
A
C
ARG
183
1_555
A
MSE
206
A
N
MSE
184
1_555
covale
1.341
both
A
MSE
206
A
C
MSE
184
1_555
A
LEU
207
A
N
LEU
185
1_555
covale
1.343
both
A
ALA
233
A
C
ALA
211
1_555
A
MSE
234
A
N
MSE
212
1_555
covale
1.342
both
A
MSE
234
A
C
MSE
212
1_555
A
LYS
235
A
N
LYS
213
1_555
covale
1.334
both
A
LEU
253
A
C
LEU
231
1_555
A
MSE
254
A
N
MSE
232
1_555
covale
1.345
both
A
MSE
254
A
C
MSE
232
1_555
A
LEU
255
A
N
LEU
233
1_555
covale
1.330
both
A
GLY
260
A
C
GLY
238
1_555
A
MSE
261
A
N
MSE
239
1_555
covale
1.336
both
A
MSE
261
A
C
MSE
239
1_555
A
ALA
262
A
N
ALA
240
1_555
covale
1.333
both
A
LYS
342
A
C
LYS
320
1_555
A
MSE
343
A
N
MSE
321
1_555
covale
1.337
both
A
MSE
343
A
C
MSE
321
1_555
A
ILE
344
A
N
ILE
322
1_555
covale
1.339
both
A
LEU
351
A
C
LEU
329
1_555
A
MSE
352
A
N
MSE
330
1_555
covale
1.328
both
A
MSE
352
A
C
MSE
330
1_555
A
VAL
353
A
N
VAL
331
1_555
metalc
2.748
A
GLU
114
A
OE2
GLU
92
1_555
A
CA
504
F
CA
CA
1_555
metalc
2.545
A
ASP
131
A
OD2
ASP
109
1_555
A
CA
504
F
CA
CA
1_555
metalc
2.333
A
TRP
133
A
O
TRP
111
1_555
A
CA
509
K
CA
CA
1_555
metalc
2.696
A
ASP
157
A
OD1
ASP
135
1_555
A
CA
505
G
CA
CA
1_555
metalc
2.969
A
ASP
159
A
OD1
ASP
137
1_555
A
CA
505
G
CA
CA
1_555
metalc
2.678
A
GLU
182
A
OE1
GLU
160
1_555
A
CA
507
I
CA
CA
1_555
metalc
3.198
A
GLU
182
A
OE2
GLU
160
1_555
A
CA
508
J
CA
CA
1_555
metalc
2.342
A
ASP
185
A
OD1
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
metalc
2.886
A
ASP
185
A
OD2
ASP
163
1_555
A
CA
502
D
CA
CA
1_555
metalc
2.277
A
GLU
187
A
OE1
GLU
165
1_555
A
CA
502
D
CA
CA
1_555
metalc
2.345
A
SER
243
A
O
SER
221
1_555
A
CA
501
C
CA
CA
1_555
metalc
2.224
A
GLN
249
A
OE1
GLN
227
1_555
A
CA
501
C
CA
CA
1_555
metalc
2.645
A
SER
270
A
O
SER
248
1_555
A
CA
506
H
CA
CA
1_555
metalc
2.578
A
ASP
275
A
OD1
ASP
253
1_555
A
CA
506
H
CA
CA
1_555
metalc
3.010
A
GLU
299
A
OE2
GLU
277
1_555
A
CA
504
F
CA
CA
1_555
metalc
2.436
A
CA
501
C
CA
CA
1_555
A
HOH
676
M
O
HOH
1_555
metalc
2.347
A
CA
501
C
CA
CA
1_555
A
HOH
678
M
O
HOH
1_555
metalc
2.610
A
CA
501
C
CA
CA
1_555
A
HOH
679
M
O
HOH
1_555
metalc
2.332
A
CA
501
C
CA
CA
1_555
A
HOH
686
M
O
HOH
1_555
metalc
2.653
A
CA
501
C
CA
CA
1_555
A
HOH
688
M
O
HOH
1_555
metalc
2.229
A
CA
502
D
CA
CA
1_555
A
HOH
624
M
O
HOH
1_555
metalc
2.271
A
CA
502
D
CA
CA
1_555
A
HOH
689
M
O
HOH
1_555
metalc
2.633
A
CA
502
D
CA
CA
1_555
A
HOH
690
M
O
HOH
1_555
metalc
2.803
A
CA
503
E
CA
CA
1_555
A
HOH
673
M
O
HOH
1_555
metalc
2.883
A
CA
503
E
CA
CA
1_555
A
HOH
674
M
O
HOH
1_555
metalc
2.401
A
CA
503
E
CA
CA
1_555
A
HOH
691
M
O
HOH
1_555
metalc
3.065
A
CA
504
F
CA
CA
1_555
A
HOH
616
M
O
HOH
1_555
metalc
2.457
A
CA
505
G
CA
CA
1_555
A
HOH
680
M
O
HOH
1_555
metalc
2.197
A
CA
505
G
CA
CA
1_555
A
HOH
692
M
O
HOH
1_555
metalc
2.753
A
CA
506
H
CA
CA
1_555
A
HOH
670
M
O
HOH
1_555
metalc
2.485
A
CA
506
H
CA
CA
1_555
A
HOH
671
M
O
HOH
1_555
metalc
2.453
A
CA
506
H
CA
CA
1_555
A
HOH
672
M
O
HOH
1_555
metalc
2.609
A
CA
507
I
CA
CA
1_555
A
HOH
617
M
O
HOH
1_555
metalc
2.475
A
CA
507
I
CA
CA
1_555
A
HOH
700
M
O
HOH
1_555
metalc
2.767
A
CA
507
I
CA
CA
1_555
A
HOH
701
M
O
HOH
1_555
metalc
2.479
A
CA
508
J
CA
CA
1_555
A
HOH
711
M
O
HOH
1_555
metalc
2.786
A
CA
508
J
CA
CA
1_555
A
HOH
712
M
O
HOH
1_555
metalc
2.546
A
CA
508
J
CA
CA
1_555
A
HOH
713
M
O
HOH
1_555
metalc
2.397
A
CA
509
K
CA
CA
1_555
A
HOH
708
M
O
HOH
1_555
metalc
2.454
A
CA
509
K
CA
CA
1_555
A
HOH
709
M
O
HOH
1_555
metalc
2.448
A
CA
509
K
CA
CA
1_555
A
HOH
710
M
O
HOH
1_555
HYDROLASE
Imelysin-like protein, putative metalloendopeptidase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HYDROLASE
A
TRP
133
A
TRP
111
1
A
PRO
134
A
PRO
112
-7.34
A
TYR
368
A
TYR
346
1
A
PRO
369
A
PRO
347
-5.87
A6LF58_PARD8
UNP
1
24
A6LF58
NDDPGKDPDVVTYDFKNLPADSGAKPTEDQMSAVVATFVDEVALPTYKDMLTKMTAYKNAVDKFIASGSKNDLADACDAW
RAVRVPWEQSEAFLFGVADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDAEDGPQNLRGFHTAEKMLFLDGEP
RDLETSPFAKNELEYLKLVSERMLSDTQDLYNGWLKGLGTSDVPSSYAEAMKKHDGSAYSIGNVYQAIELMLNGNNGMAG
ISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVESWYSWNSLDDYKNNIVSIKNAYFGGRDLDEESASESSLHALTKM
INPTLDSLMVVQIDKTIDAINAIGYPFRNNLGDTEHINTATEACADLTTGLGVVKSKFTN
24
403
4ECG
24
403
A6LF58
A
1
2
381
1
expression tag
GLY
0
4ECG
A
A6LF58
UNP
1
2
anti-parallel
A
PHE
178
A
PHE
156
A
LEU
179
A
LEU
157
A
GLU
182
A
GLU
160
A
PRO
183
A
PRO
161
BINDING SITE FOR RESIDUE CL A 500
A
CL
500
Software
5
BINDING SITE FOR RESIDUE CA A 501
A
CA
501
Software
7
BINDING SITE FOR RESIDUE CA A 502
A
CA
502
Software
6
BINDING SITE FOR RESIDUE CA A 503
A
CA
503
Software
5
BINDING SITE FOR RESIDUE CA A 504
A
CA
504
Software
7
BINDING SITE FOR RESIDUE CA A 505
A
CA
505
Software
4
BINDING SITE FOR RESIDUE CA A 506
A
CA
506
Software
5
BINDING SITE FOR RESIDUE CA A 507
A
CA
507
Software
5
BINDING SITE FOR RESIDUE CA A 508
A
CA
508
Software
5
BINDING SITE FOR RESIDUE CA A 509
A
CA
509
Software
4
BINDING SITE FOR RESIDUE 1PE A 510
A
1PE
510
Software
4
A
TRP
304
A
TRP
282
5
1_555
A
SER
306
A
SER
284
5
1_555
A
LEU
307
A
LEU
285
5
1_555
A
PRO
369
A
PRO
347
5
1_555
A
PHE
370
A
PHE
348
5
1_555
A
SER
243
A
SER
221
7
1_555
A
GLN
249
A
GLN
227
7
1_555
A
HOH
676
M
HOH
7
1_555
A
HOH
678
M
HOH
7
1_555
A
HOH
679
M
HOH
7
1_555
A
HOH
686
M
HOH
7
1_555
A
HOH
688
M
HOH
7
1_555
A
ASP
185
A
ASP
163
6
1_555
A
GLU
187
A
GLU
165
6
1_555
A
GLU
330
A
GLU
308
6
6_755
A
HOH
624
M
HOH
6
1_555
A
HOH
689
M
HOH
6
1_555
A
HOH
690
M
HOH
6
1_555
A
LYS
193
A
LYS
171
5
4_564
A
CA
504
F
CA
5
1_555
A
HOH
673
M
HOH
5
1_555
A
HOH
674
M
HOH
5
1_555
A
HOH
691
M
HOH
5
1_555
A
GLU
111
A
GLU
89
7
1_555
A
GLU
114
A
GLU
92
7
1_555
A
ASP
131
A
ASP
109
7
1_555
A
LYS
272
A
LYS
250
7
1_555
A
GLU
299
A
GLU
277
7
1_555
A
CA
503
E
CA
7
1_555
A
HOH
616
M
HOH
7
1_555
A
ASP
157
A
ASP
135
4
1_555
A
ASP
159
A
ASP
137
4
1_555
A
HOH
680
M
HOH
4
1_555
A
HOH
692
M
HOH
4
1_555
A
SER
270
A
SER
248
5
1_555
A
ASP
275
A
ASP
253
5
1_555
A
HOH
670
M
HOH
5
1_555
A
HOH
671
M
HOH
5
1_555
A
HOH
672
M
HOH
5
1_555
A
GLU
182
A
GLU
160
5
1_555
A
ASP
328
A
ASP
306
5
6_755
A
HOH
617
M
HOH
5
1_555
A
HOH
700
M
HOH
5
1_555
A
HOH
701
M
HOH
5
1_555
A
GLU
182
A
GLU
160
5
1_555
A
HOH
711
M
HOH
5
1_555
A
HOH
712
M
HOH
5
1_555
A
HOH
713
M
HOH
5
1_555
A
HOH
714
M
HOH
5
1_555
A
TRP
133
A
TRP
111
4
1_555
A
HOH
708
M
HOH
4
1_555
A
HOH
709
M
HOH
4
1_555
A
HOH
710
M
HOH
4
1_555
A
GLU
141
A
GLU
119
4
1_555
A
LYS
175
A
LYS
153
4
1_555
A
GLU
195
A
GLU
173
4
1_555
A
HOH
698
M
HOH
4
1_555
80
I 41