0.015456 0.000000 0.000000 0.000000 0.010787 0.000000 0.000000 0.000000 0.003957 0.00000 0.00000 0.00000 Eigenbrot, C. Ultsch, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 64.700 92.707 252.729 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US MAbs 1942-0862 6 1059 1068 24830649 Generation of a high-fidelity antibody against nerve growth factor using library scanning mutagenesis and validation with structures of the initial and optimized Fab-antigen complexes. 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 CCD 2005-12-08 ADSC QUANTUM 210r SI(111) SINGLE WAVELENGTH M x-ray 1 1.0 1.0 5.0.2 ALS 1.0 SYNCHROTRON ALS BEAMLINE 5.0.2 13515.410 Beta-nerve growth factor 1 man polymer 23621.170 tanezumab Fab light chain 1 man polymer 24959.738 tanezumab Fab heavy chain 1 man polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 37 nat water Beta-NGF no no SSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYC TTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKAVRRA SSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYC TTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKAVRRA V polypeptide(L) no no DIQMTQSPSSLSASVGDRVTITCRASQSISNNLNWYQQKPGKAPKLLIYYTSRFHSGVPSRFSGSGSGTDFTFTISSLQP EDIATYYCQQEHTLPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC DIQMTQSPSSLSASVGDRVTITCRASQSISNNLNWYQQKPGKAPKLLIYYTSRFHSGVPSRFSGSGSGTDFTFTISSLQP EDIATYYCQQEHTLPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC L polypeptide(L) no no QVQLQESGPGLVKPSETLSLTCTVSGFSLIGYDLNWIRQPPGKGLEWIGIIWGDGTTDYNSAVKSRVTISKDTSKNQFSL KLSSVTAADTAVYYCARGGYWYATSYYFDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTV SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSNFGTQTYTCNVDHKPSNTKVDKTVERKTSHHHHHHG QVQLQESGPGLVKPSETLSLTCTVSGFSLIGYDLNWIRQPPGKGLEWIGIIWGDGTTDYNSAVKSRVTISKDTSKNQFSL KLSSVTAADTAVYYCARGGYWYATSYYFDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTV SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSNFGTQTYTCNVDHKPSNTKVDKTVERKTSHHHHHHG H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample NGF, NGFB 9606 Homo sapiens 562 Escherichia coli sample 9606 Homo sapiens 562 Escherichia coli sample 9606 Homo sapiens 562 Escherichia coli 1 3.05 59.69 6.8 PEG 5000 monomethylether, glycerol, sodium cacodylate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 300K 300 pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop pdbx_struct_oper_list pdbx_unobs_or_zero_occ_atoms software repository Initial release Database references Advisory Derived calculations Refinement description 1 0 2014-04-02 1 1 2014-08-13 1 2 2017-10-25 _software.name RCSB Y RCSB 2012-03-27 REL REL GOL GLYCEROL HOH water GOL 9 4 GOL GOL 301 H HOH 1 5 HOH HOH 201 V HOH 7 5 HOH HOH 202 V HOH 20 5 HOH HOH 203 V HOH 2 5 HOH HOH 301 L HOH 4 5 HOH HOH 302 L HOH 5 5 HOH HOH 303 L HOH 8 5 HOH HOH 304 L HOH 10 5 HOH HOH 305 L HOH 12 5 HOH HOH 306 L HOH 14 5 HOH HOH 307 L HOH 15 5 HOH HOH 308 L HOH 16 5 HOH HOH 309 L HOH 17 5 HOH HOH 310 L HOH 21 5 HOH HOH 311 L HOH 22 5 HOH HOH 312 L HOH 25 5 HOH HOH 313 L HOH 26 5 HOH HOH 314 L HOH 27 5 HOH HOH 315 L HOH 28 5 HOH HOH 316 L HOH 29 5 HOH HOH 317 L HOH 31 5 HOH HOH 318 L HOH 32 5 HOH HOH 319 L HOH 36 5 HOH HOH 320 L HOH 3 5 HOH HOH 401 H HOH 6 5 HOH HOH 402 H HOH 11 5 HOH HOH 403 H HOH 13 5 HOH HOH 404 H HOH 18 5 HOH HOH 405 H HOH 19 5 HOH HOH 406 H HOH 23 5 HOH HOH 407 H HOH 24 5 HOH HOH 408 H HOH 30 5 HOH HOH 409 H HOH 33 5 HOH HOH 410 H HOH 34 5 HOH HOH 411 H HOH 35 5 HOH HOH 412 H HOH 37 5 HOH HOH 413 H HOH 38 5 HOH HOH 414 H n 1 1 V n 2 2 V n 3 3 V n 4 4 V n 5 5 V n 6 6 V n 7 7 V HIS 8 n 8 HIS 8 V ARG 9 n 9 ARG 9 V GLY 10 n 10 GLY 10 V GLU 11 n 11 GLU 11 V PHE 12 n 12 PHE 12 V SER 13 n 13 SER 13 V VAL 14 n 14 VAL 14 V CYS 15 n 15 CYS 15 V ASP 16 n 16 ASP 16 V SER 17 n 17 SER 17 V VAL 18 n 18 VAL 18 V SER 19 n 19 SER 19 V VAL 20 n 20 VAL 20 V TRP 21 n 21 TRP 21 V VAL 22 n 22 VAL 22 V GLY 23 n 23 GLY 23 V ASP 24 n 24 ASP 24 V LYS 25 n 25 LYS 25 V THR 26 n 26 THR 26 V THR 27 n 27 THR 27 V ALA 28 n 28 ALA 28 V THR 29 n 29 THR 29 V ASP 30 n 30 ASP 30 V ILE 31 n 31 ILE 31 V LYS 32 n 32 LYS 32 V GLY 33 n 33 GLY 33 V LYS 34 n 34 LYS 34 V GLU 35 n 35 GLU 35 V VAL 36 n 36 VAL 36 V MET 37 n 37 MET 37 V VAL 38 n 38 VAL 38 V LEU 39 n 39 LEU 39 V GLY 40 n 40 GLY 40 V GLU 41 n 41 GLU 41 V VAL 42 n 42 VAL 42 V ASN 43 n 43 ASN 43 V ILE 44 n 44 ILE 44 V ASN 45 n 45 ASN 45 V ASN 46 n 46 ASN 46 V SER 47 n 47 SER 47 V VAL 48 n 48 VAL 48 V PHE 49 n 49 PHE 49 V LYS 50 n 50 LYS 50 V GLN 51 n 51 GLN 51 V TYR 52 n 52 TYR 52 V PHE 53 n 53 PHE 53 V PHE 54 n 54 PHE 54 V GLU 55 n 55 GLU 55 V THR 56 n 56 THR 56 V LYS 57 n 57 LYS 57 V CYS 58 n 58 CYS 58 V ARG 59 n 59 ARG 59 V ASP 60 n 60 ASP 60 V PRO 61 n 61 PRO 61 V ASN 62 n 62 ASN 62 V n 63 63 V VAL 64 n 64 VAL 64 V ASP 65 n 65 ASP 65 V n 66 66 V GLY 67 n 67 GLY 67 V CYS 68 n 68 CYS 68 V ARG 69 n 69 ARG 69 V GLY 70 n 70 GLY 70 V ILE 71 n 71 ILE 71 V ASP 72 n 72 ASP 72 V SER 73 n 73 SER 73 V LYS 74 n 74 LYS 74 V HIS 75 n 75 HIS 75 V TRP 76 n 76 TRP 76 V ASN 77 n 77 ASN 77 V SER 78 n 78 SER 78 V TYR 79 n 79 TYR 79 V CYS 80 n 80 CYS 80 V THR 81 n 81 THR 81 V THR 82 n 82 THR 82 V THR 83 n 83 THR 83 V HIS 84 n 84 HIS 84 V THR 85 n 85 THR 85 V PHE 86 n 86 PHE 86 V VAL 87 n 87 VAL 87 V LYS 88 n 88 LYS 88 V ALA 89 n 89 ALA 89 V LEU 90 n 90 LEU 90 V THR 91 n 91 THR 91 V MET 92 n 92 MET 92 V ASP 93 n 93 ASP 93 V GLY 94 n 94 GLY 94 V LYS 95 n 95 LYS 95 V GLN 96 n 96 GLN 96 V ALA 97 n 97 ALA 97 V ALA 98 n 98 ALA 98 V TRP 99 n 99 TRP 99 V ARG 100 n 100 ARG 100 V PHE 101 n 101 PHE 101 V ILE 102 n 102 ILE 102 V ARG 103 n 103 ARG 103 V ILE 104 n 104 ILE 104 V ASP 105 n 105 ASP 105 V THR 106 n 106 THR 106 V ALA 107 n 107 ALA 107 V CYS 108 n 108 CYS 108 V VAL 109 n 109 VAL 109 V CYS 110 n 110 CYS 110 V VAL 111 n 111 VAL 111 V LEU 112 n 112 LEU 112 V SER 113 n 113 SER 113 V ARG 114 n 114 ARG 114 V LYS 115 n 115 LYS 115 V n 116 116 V n 117 117 V n 118 118 V n 119 119 V n 120 120 V ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L GLN 3 n 3 GLN 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L SER 9 n 9 SER 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L ALA 13 n 13 ALA 13 L SER 14 n 14 SER 14 L VAL 15 n 15 VAL 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L ARG 18 n 18 ARG 18 L VAL 19 n 19 VAL 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L THR 22 n 22 THR 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 28 n 28 SER 28 L ILE 29 n 29 ILE 29 L SER 30 n 30 SER 30 L ASN 31 n 31 ASN 31 L ASN 32 n 32 ASN 32 L LEU 33 n 33 LEU 33 L ASN 34 n 34 ASN 34 L TRP 35 n 35 TRP 35 L TYR 36 n 36 TYR 36 L GLN 37 n 37 GLN 37 L GLN 38 n 38 GLN 38 L LYS 39 n 39 LYS 39 L PRO 40 n 40 PRO 40 L GLY 41 n 41 GLY 41 L LYS 42 n 42 LYS 42 L ALA 43 n 43 ALA 43 L PRO 44 n 44 PRO 44 L LYS 45 n 45 LYS 45 L LEU 46 n 46 LEU 46 L LEU 47 n 47 LEU 47 L ILE 48 n 48 ILE 48 L TYR 49 n 49 TYR 49 L TYR 50 n 50 TYR 50 L THR 51 n 51 THR 51 L SER 52 n 52 SER 52 L ARG 53 n 53 ARG 53 L PHE 54 n 54 PHE 54 L HIS 55 n 55 HIS 55 L SER 56 n 56 SER 56 L GLY 57 n 57 GLY 57 L VAL 58 n 58 VAL 58 L PRO 59 n 59 PRO 59 L SER 60 n 60 SER 60 L ARG 61 n 61 ARG 61 L PHE 62 n 62 PHE 62 L SER 63 n 63 SER 63 L GLY 64 n 64 GLY 64 L SER 65 n 65 SER 65 L GLY 66 n 66 GLY 66 L SER 67 n 67 SER 67 L GLY 68 n 68 GLY 68 L THR 69 n 69 THR 69 L ASP 70 n 70 ASP 70 L PHE 71 n 71 PHE 71 L THR 72 n 72 THR 72 L PHE 73 n 73 PHE 73 L THR 74 n 74 THR 74 L ILE 75 n 75 ILE 75 L SER 76 n 76 SER 76 L SER 77 n 77 SER 77 L LEU 78 n 78 LEU 78 L GLN 79 n 79 GLN 79 L PRO 80 n 80 PRO 80 L GLU 81 n 81 GLU 81 L ASP 82 n 82 ASP 82 L ILE 83 n 83 ILE 83 L ALA 84 n 84 ALA 84 L THR 85 n 85 THR 85 L TYR 86 n 86 TYR 86 L TYR 87 n 87 TYR 87 L CYS 88 n 88 CYS 88 L GLN 89 n 89 GLN 89 L GLN 90 n 90 GLN 90 L GLU 91 n 91 GLU 91 L HIS 92 n 92 HIS 92 L THR 93 n 93 THR 93 L LEU 94 n 94 LEU 94 L PRO 95 n 95 PRO 95 L TYR 96 n 96 TYR 96 L THR 97 n 97 THR 97 L PHE 98 n 98 PHE 98 L GLY 99 n 99 GLY 99 L GLN 100 n 100 GLN 100 L GLY 101 n 101 GLY 101 L THR 102 n 102 THR 102 L LYS 103 n 103 LYS 103 L LEU 104 n 104 LEU 104 L GLU 105 n 105 GLU 105 L ILE 106 n 106 ILE 106 L LYS 107 n 107 LYS 107 L ARG 108 n 108 ARG 108 L THR 109 n 109 THR 109 L VAL 110 n 110 VAL 110 L ALA 111 n 111 ALA 111 L ALA 112 n 112 ALA 112 L PRO 113 n 113 PRO 113 L SER 114 n 114 SER 114 L VAL 115 n 115 VAL 115 L PHE 116 n 116 PHE 116 L ILE 117 n 117 ILE 117 L PHE 118 n 118 PHE 118 L PRO 119 n 119 PRO 119 L PRO 120 n 120 PRO 120 L SER 121 n 121 SER 121 L ASP 122 n 122 ASP 122 L GLU 123 n 123 GLU 123 L GLN 124 n 124 GLN 124 L LEU 125 n 125 LEU 125 L LYS 126 n 126 LYS 126 L SER 127 n 127 SER 127 L GLY 128 n 128 GLY 128 L THR 129 n 129 THR 129 L ALA 130 n 130 ALA 130 L SER 131 n 131 SER 131 L VAL 132 n 132 VAL 132 L VAL 133 n 133 VAL 133 L CYS 134 n 134 CYS 134 L LEU 135 n 135 LEU 135 L LEU 136 n 136 LEU 136 L ASN 137 n 137 ASN 137 L ASN 138 n 138 ASN 138 L PHE 139 n 139 PHE 139 L TYR 140 n 140 TYR 140 L PRO 141 n 141 PRO 141 L ARG 142 n 142 ARG 142 L GLU 143 n 143 GLU 143 L ALA 144 n 144 ALA 144 L LYS 145 n 145 LYS 145 L VAL 146 n 146 VAL 146 L GLN 147 n 147 GLN 147 L TRP 148 n 148 TRP 148 L LYS 149 n 149 LYS 149 L VAL 150 n 150 VAL 150 L ASP 151 n 151 ASP 151 L ASN 152 n 152 ASN 152 L ALA 153 n 153 ALA 153 L LEU 154 n 154 LEU 154 L GLN 155 n 155 GLN 155 L SER 156 n 156 SER 156 L GLY 157 n 157 GLY 157 L ASN 158 n 158 ASN 158 L SER 159 n 159 SER 159 L GLN 160 n 160 GLN 160 L GLU 161 n 161 GLU 161 L SER 162 n 162 SER 162 L VAL 163 n 163 VAL 163 L THR 164 n 164 THR 164 L GLU 165 n 165 GLU 165 L GLN 166 n 166 GLN 166 L ASP 167 n 167 ASP 167 L SER 168 n 168 SER 168 L LYS 169 n 169 LYS 169 L ASP 170 n 170 ASP 170 L SER 171 n 171 SER 171 L THR 172 n 172 THR 172 L TYR 173 n 173 TYR 173 L SER 174 n 174 SER 174 L LEU 175 n 175 LEU 175 L SER 176 n 176 SER 176 L SER 177 n 177 SER 177 L THR 178 n 178 THR 178 L LEU 179 n 179 LEU 179 L THR 180 n 180 THR 180 L LEU 181 n 181 LEU 181 L SER 182 n 182 SER 182 L LYS 183 n 183 LYS 183 L ALA 184 n 184 ALA 184 L ASP 185 n 185 ASP 185 L TYR 186 n 186 TYR 186 L GLU 187 n 187 GLU 187 L LYS 188 n 188 LYS 188 L HIS 189 n 189 HIS 189 L LYS 190 n 190 LYS 190 L VAL 191 n 191 VAL 191 L TYR 192 n 192 TYR 192 L ALA 193 n 193 ALA 193 L CYS 194 n 194 CYS 194 L GLU 195 n 195 GLU 195 L VAL 196 n 196 VAL 196 L THR 197 n 197 THR 197 L HIS 198 n 198 HIS 198 L GLN 199 n 199 GLN 199 L GLY 200 n 200 GLY 200 L LEU 201 n 201 LEU 201 L SER 202 n 202 SER 202 L SER 203 n 203 SER 203 L PRO 204 n 204 PRO 204 L VAL 205 n 205 VAL 205 L THR 206 n 206 THR 206 L LYS 207 n 207 LYS 207 L SER 208 n 208 SER 208 L PHE 209 n 209 PHE 209 L ASN 210 n 210 ASN 210 L ARG 211 n 211 ARG 211 L GLY 212 n 212 GLY 212 L GLU 213 n 213 GLU 213 L CYS 214 n 214 CYS 214 L GLN 1 n 1 GLN 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H GLY 10 n 10 GLY 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H SER 15 n 15 SER 15 H GLU 16 n 16 GLU 16 H THR 17 n 17 THR 17 H LEU 18 n 18 LEU 18 H SER 19 n 19 SER 19 H LEU 20 n 20 LEU 20 H THR 21 n 21 THR 21 H CYS 22 n 22 CYS 22 H THR 23 n 23 THR 23 H VAL 24 n 24 VAL 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H SER 28 n 28 SER 28 H LEU 29 n 29 LEU 29 H ILE 30 n 30 ILE 30 H GLY 31 n 31 GLY 31 H TYR 32 n 32 TYR 32 H ASN 33 n 33 ASP 33 H LEU 34 n 34 LEU 34 H ASN 35 n 35 ASN 35 H TRP 36 n 36 TRP 36 H ILE 37 n 37 ILE 37 H ARG 38 n 38 ARG 38 H GLN 39 n 39 GLN 39 H PRO 40 n 40 PRO 40 H PRO 41 n 41 PRO 41 H GLY 42 n 42 GLY 42 H LYS 43 n 43 LYS 43 H GLY 44 n 44 GLY 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H ILE 48 n 48 ILE 48 H GLY 49 n 49 GLY 49 H ILE 50 n 50 ILE 50 H ILE 51 n 51 ILE 51 H TRP 52 n 52 TRP 52 H GLY 53 n 53 GLY 53 H ASP 54 n 54 ASP 54 H GLY 55 n 55 GLY 55 H THR 56 n 56 THR 56 H THR 57 n 57 THR 57 H ASP 58 n 58 ASP 58 H TYR 59 n 59 TYR 59 H ASN 60 n 60 ASN 60 H SER 61 n 61 SER 61 H ALA 62 n 62 ALA 62 H VAL 63 n 63 VAL 63 H LYS 64 n 64 LYS 64 H SER 65 n 65 SER 65 H ARG 66 n 66 ARG 66 H VAL 67 n 67 VAL 67 H THR 68 n 68 THR 68 H ILE 69 n 69 ILE 69 H SER 70 n 70 SER 70 H LYS 71 n 71 LYS 71 H ASP 72 n 72 ASP 72 H THR 73 n 73 THR 73 H SER 74 n 74 SER 74 H LYS 75 n 75 LYS 75 H ASN 76 n 76 ASN 76 H GLN 77 n 77 GLN 77 H PHE 78 n 78 PHE 78 H SER 79 n 79 SER 79 H LEU 80 n 80 LEU 80 H LYS 81 n 81 LYS 81 H LEU 82 n 82 LEU 82 H SER 82 n 83 A SER 82 H SER 82 n 84 B SER 82 H VAL 82 n 85 C VAL 82 H THR 83 n 86 THR 83 H ALA 84 n 87 ALA 84 H ALA 85 n 88 ALA 85 H ASP 86 n 89 ASP 86 H THR 87 n 90 THR 87 H ALA 88 n 91 ALA 88 H VAL 89 n 92 VAL 89 H TYR 90 n 93 TYR 90 H TYR 91 n 94 TYR 91 H CYS 92 n 95 CYS 92 H ALA 93 n 96 ALA 93 H ARG 94 n 97 ARG 94 H GLY 95 n 98 GLY 95 H GLY 96 n 99 GLY 96 H TYR 97 n 100 TYR 97 H TRP 98 n 101 TRP 98 H TYR 99 n 102 TYR 99 H ALA 100 n 103 ALA 100 H THR 100 n 104 A THR 100 H SER 100 n 105 B SER 100 H TYR 100 n 106 C TYR 100 H TYR 100 n 107 D TYR 100 H PHE 100 n 108 E PHE 100 H ASP 101 n 109 ASP 101 H TYR 102 n 110 TYR 102 H TRP 103 n 111 TRP 103 H GLY 104 n 112 GLY 104 H GLN 105 n 113 GLN 105 H GLY 106 n 114 GLY 106 H THR 107 n 115 THR 107 H LEU 108 n 116 LEU 108 H VAL 109 n 117 VAL 109 H THR 110 n 118 THR 110 H VAL 111 n 119 VAL 111 H SER 112 n 120 SER 112 H SER 113 n 121 SER 113 H ALA 114 n 122 ALA 114 H SER 115 n 123 SER 115 H THR 116 n 124 THR 116 H LYS 117 n 125 LYS 117 H GLY 118 n 126 GLY 118 H PRO 119 n 127 PRO 119 H SER 120 n 128 SER 120 H VAL 121 n 129 VAL 121 H PHE 122 n 130 PHE 122 H PRO 123 n 131 PRO 123 H LEU 124 n 132 LEU 124 H ALA 125 n 133 ALA 125 H PRO 126 n 134 PRO 126 H CYS 127 n 135 CYS 127 H SER 128 n 136 SER 128 H n 137 129 H n 138 130 H n 139 131 H n 140 132 H n 141 133 H n 142 134 H THR 135 n 143 THR 135 H ALA 136 n 144 ALA 136 H ALA 137 n 145 ALA 137 H LEU 138 n 146 LEU 138 H GLY 139 n 147 GLY 139 H CYS 140 n 148 CYS 140 H LEU 141 n 149 LEU 141 H VAL 142 n 150 VAL 142 H LYS 143 n 151 LYS 143 H ASP 144 n 152 ASP 144 H TYR 145 n 153 TYR 145 H PHE 146 n 154 PHE 146 H PRO 147 n 155 PRO 147 H GLU 148 n 156 GLU 148 H PRO 149 n 157 PRO 149 H VAL 150 n 158 VAL 150 H THR 151 n 159 THR 151 H VAL 152 n 160 VAL 152 H SER 153 n 161 SER 153 H TRP 154 n 162 TRP 154 H ASN 155 n 163 ASN 155 H SER 156 n 164 SER 156 H GLY 157 n 165 GLY 157 H ALA 158 n 166 ALA 158 H LEU 159 n 167 LEU 159 H THR 160 n 168 THR 160 H SER 161 n 169 SER 161 H GLY 162 n 170 GLY 162 H VAL 163 n 171 VAL 163 H HIS 164 n 172 HIS 164 H THR 165 n 173 THR 165 H PHE 166 n 174 PHE 166 H PRO 167 n 175 PRO 167 H ALA 168 n 176 ALA 168 H VAL 169 n 177 VAL 169 H LEU 170 n 178 LEU 170 H GLN 171 n 179 GLN 171 H SER 172 n 180 SER 172 H SER 173 n 181 SER 173 H GLY 174 n 182 GLY 174 H LEU 175 n 183 LEU 175 H TYR 176 n 184 TYR 176 H SER 177 n 185 SER 177 H LEU 178 n 186 LEU 178 H SER 179 n 187 SER 179 H SER 180 n 188 SER 180 H VAL 181 n 189 VAL 181 H VAL 182 n 190 VAL 182 H THR 183 n 191 THR 183 H VAL 184 n 192 VAL 184 H PRO 185 n 193 PRO 185 H SER 186 n 194 SER 186 H SER 187 n 195 SER 187 H ASN 188 n 196 ASN 188 H PHE 189 n 197 PHE 189 H GLY 190 n 198 GLY 190 H THR 191 n 199 THR 191 H GLN 192 n 200 GLN 192 H THR 193 n 201 THR 193 H TYR 194 n 202 TYR 194 H THR 195 n 203 THR 195 H CYS 196 n 204 CYS 196 H ASN 197 n 205 ASN 197 H VAL 198 n 206 VAL 198 H ASP 199 n 207 ASP 199 H HIS 200 n 208 HIS 200 H LYS 201 n 209 LYS 201 H PRO 202 n 210 PRO 202 H SER 203 n 211 SER 203 H ASN 204 n 212 ASN 204 H THR 205 n 213 THR 205 H LYS 206 n 214 LYS 206 H VAL 207 n 215 VAL 207 H ASP 208 n 216 ASP 208 H LYS 209 n 217 LYS 209 H THR 210 n 218 THR 210 H VAL 211 n 219 VAL 211 H GLU 212 n 220 GLU 212 H ARG 213 n 221 ARG 213 H n 222 214 H n 223 215 H n 224 216 H n 225 217 H n 226 218 H n 227 219 H n 228 220 H n 229 221 H n 230 222 H n 231 223 H 1.0696 0.8617 -1.0503 3.0207 -0.8775 4.8625 -0.0290 0.1507 0.0438 -0.1352 0.0514 0.2820 0.5347 -0.8387 -0.0224 0.1396 -0.1373 -0.0830 0.2736 -0.0045 0.1634 refined -12.5740 -26.6370 -39.1470 X-RAY DIFFRACTION 1.3203 0.5788 -0.3375 2.1498 0.1171 3.8470 -0.0653 -0.1806 -0.1086 -0.0568 0.0693 0.0240 0.0397 0.0732 -0.0040 0.0738 -0.0116 -0.0176 0.1965 0.0339 0.1828 refined -8.5920 -32.4050 -2.2350 X-RAY DIFFRACTION 0.1129 -0.1342 0.0495 1.4743 0.9389 6.4524 -0.0529 0.0239 0.1033 -0.0057 0.1836 -0.0455 -0.9023 0.0601 -0.1308 0.2510 -0.0057 -0.0152 0.1291 -0.0348 0.1624 refined -2.2360 -8.0370 -34.7370 X-RAY DIFFRACTION 3.7643 -0.2092 -0.0201 2.4666 -0.9222 4.6452 0.0970 0.0342 -0.2563 0.1975 -0.2019 -0.2174 0.0336 0.2495 0.1049 0.0455 -0.0352 -0.0198 0.1752 -0.0355 0.1346 refined 3.7010 -23.5560 -8.7280 X-RAY DIFFRACTION 1.5288 1.8341 -0.5120 4.1246 -0.6595 3.7432 0.1362 -0.1955 0.0244 0.0230 -0.1382 -0.0090 -0.1707 0.5942 0.0020 0.2275 -0.0466 -0.0127 0.2978 -0.0338 0.1768 refined 6.4100 -12.9450 -62.9920 X-RAY DIFFRACTION L 1 L 107 X-RAY DIFFRACTION 1 L 108 L 214 X-RAY DIFFRACTION 2 H 1 H 112 X-RAY DIFFRACTION 3 H 113 H 213 X-RAY DIFFRACTION 4 V 10 V 115 X-RAY DIFFRACTION 5 author_defined_assembly 3 trimeric 5570 -31 25550 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 V N VAL 22 A N VAL 22 V O PHE 53 A O PHE 53 V N ALA 28 A N ALA 28 V O VAL 36 A O VAL 36 V N MET 37 A N MET 37 V O MET 92 A O MET 92 V N THR 81 A N THR 81 V O VAL 109 A O VAL 109 V N VAL 42 A N VAL 42 V O PHE 49 A O PHE 49 L N SER 7 B N SER 7 L O THR 22 B O THR 22 L N VAL 19 B N VAL 19 L O ILE 75 B O ILE 75 L O THR 74 B O THR 74 L N SER 63 B N SER 63 L N LEU 11 B N LEU 11 L O GLU 105 B O GLU 105 L O LEU 104 B O LEU 104 L N ALA 84 B N ALA 84 L O TYR 87 B O TYR 87 L N TYR 36 B N TYR 36 L N TRP 35 B N TRP 35 L O ILE 48 B O ILE 48 L N TYR 49 B N TYR 49 L O ARG 53 B O ARG 53 L N LEU 11 B N LEU 11 L O GLU 105 B O GLU 105 L O LEU 104 B O LEU 104 L N ALA 84 B N ALA 84 L N GLN 90 B N GLN 90 L O THR 97 B O THR 97 L N PHE 116 B N PHE 116 L O LEU 135 B O LEU 135 L N PHE 139 B N PHE 139 L O TYR 173 B O TYR 173 L O THR 178 B O THR 178 L N GLN 160 B N GLN 160 L O ALA 153 B O ALA 153 L N VAL 150 B N VAL 150 L N LYS 149 B N LYS 149 L O ALA 193 B O ALA 193 L N VAL 196 B N VAL 196 L O VAL 205 B O VAL 205 H N SER 7 C N SER 7 H O THR 21 C O THR 21 H N LEU 20 C N LEU 20 H O LEU 80 C O LEU 80 H O GLN 77 C O GLN 77 H N ASP 72 C N ASP 72 H N VAL 12 C N VAL 12 H O THR 110 C O THR 118 H O THR 107 C O THR 115 H N TYR 90 C N TYR 93 H O TYR 91 C O TYR 94 H N ILE 37 C N ILE 37 H N ARG 38 C N ARG 38 H O GLU 46 C O GLU 46 H N ILE 50 C N ILE 50 H O ASP 58 C O ASP 58 H N VAL 12 C N VAL 12 H O THR 110 C O THR 118 H O THR 107 C O THR 115 H N TYR 90 C N TYR 93 H N ARG 94 C N ARG 97 H O TYR 102 C O TYR 110 H N LEU 124 C N LEU 132 H O GLY 139 C O GLY 147 H N VAL 142 C N VAL 150 H O LEU 178 C O LEU 186 H O VAL 181 C O VAL 189 H N HIS 164 C N HIS 172 H N LEU 124 C N LEU 132 H O GLY 139 C O GLY 147 H N VAL 142 C N VAL 150 H O LEU 178 C O LEU 186 H O SER 177 C O SER 185 H N VAL 169 C N VAL 177 H N SER 153 C N SER 161 H O ASN 197 C O ASN 205 H N CYS 196 C N CYS 204 H O LYS 209 C O LYS 217 1 V SER 1 A SER 1 1 Y 1 V SER 2 A SER 2 1 Y 1 V SER 3 A SER 3 1 Y 1 V HIS 4 A HIS 4 1 Y 1 V PRO 5 A PRO 5 1 Y 1 V ILE 6 A ILE 6 1 Y 1 V PHE 7 A PHE 7 1 Y 1 V PRO 63 A PRO 63 1 Y 1 V SER 66 A SER 66 1 Y 1 V ALA 116 A ALA 116 1 Y 1 V VAL 117 A VAL 117 1 Y 1 V ARG 118 A ARG 118 1 Y 1 V ARG 119 A ARG 119 1 Y 1 V ALA 120 A ALA 120 1 Y 1 H ARG 129 C ARG 137 1 Y 1 H SER 130 C SER 138 1 Y 1 H THR 131 C THR 139 1 Y 1 H SER 132 C SER 140 1 Y 1 H GLU 133 C GLU 141 1 Y 1 H SER 134 C SER 142 1 Y 1 H LYS 214 C LYS 222 1 Y 1 H THR 215 C THR 223 1 Y 1 H SER 216 C SER 224 1 Y 1 H HIS 217 C HIS 225 1 Y 1 H HIS 218 C HIS 226 1 Y 1 H HIS 219 C HIS 227 1 Y 1 H HIS 220 C HIS 228 1 Y 1 H HIS 221 C HIS 229 1 Y 1 H HIS 222 C HIS 230 1 Y 1 H GLY 223 C GLY 231 1 Y 1 V ASN 45 -28.07 -33.52 1 V ASP 60 -11.12 -56.84 1 L SER 30 49.08 -100.21 1 L THR 51 63.09 -45.37 1 L SER 67 -173.45 145.74 1 L ASN 138 38.49 73.01 1 L LYS 169 -108.76 -63.10 1 H SER 15 85.35 -9.98 1 H LYS 64 -20.73 -53.20 1 H TYR 99 60.53 -160.58 1 H PHE 189 -84.42 -125.32 69.44 -0.0702 0.0000 0.0000 -29.8352 0.0000 29.9054 0.8990 0.8736 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2491 0.2002 0.2026 2.48 45.59 1320 24244 25793 5.12 93.94 9.534 0.208 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.397 0.285 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 0.400 2.48 45.59 37 4171 6 0 4128 0.009 1.26 0.4040 0.2464 0.2544 2.58 111 1914 2025 13 5.48 93.94 62.52 2.48 50.000 4EDW 25872 -2.000 0.06200 1 24.0000 6.600 95.2 data collection Blu-Ice phasing PHASER refinement REFMAC 5.1.24 data reduction HKL-2000 data scaling SCALEPACK refinement BUSTER 2.11.2 Beta-nerve growth factor, tanezumab Fab light chain, tanezumab Fab heavy chain Nerve Growth Factor in Complex with Fab from humanized version of mouse mAb 911 (tanezumab) 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N L GLN 79 B GLN 79 HELX_P L ILE 83 B ILE 83 5 1 5 L SER 121 B SER 121 HELX_P L SER 127 B SER 127 1 2 7 L LYS 183 B LYS 183 HELX_P L GLU 187 B GLU 187 1 3 5 H VAL 63 C VAL 63 HELX_P H SER 65 C SER 65 5 4 3 H THR 73 C THR 73 HELX_P H LYS 75 C LYS 75 5 5 3 H THR 83 C THR 86 HELX_P H THR 87 C THR 90 5 6 5 H LYS 201 C LYS 209 HELX_P H ASN 204 C ASN 212 5 7 4 disulf 2.049 V CYS 15 A SG CYS 15 1_555 V CYS 80 A SG CYS 80 1_555 disulf 2.048 V CYS 58 A SG CYS 58 1_555 V CYS 108 A SG CYS 108 1_555 disulf 2.032 V CYS 68 A SG CYS 68 1_555 V CYS 110 A SG CYS 110 1_555 disulf 2.081 L CYS 23 B SG CYS 23 1_555 L CYS 88 B SG CYS 88 1_555 disulf 2.022 L CYS 134 B SG CYS 134 1_555 L CYS 194 B SG CYS 194 1_555 disulf 2.046 L CYS 214 B SG CYS 214 1_555 H CYS 127 C SG CYS 135 1_555 disulf 2.077 H CYS 22 C SG CYS 22 1_555 H CYS 92 C SG CYS 95 1_555 disulf 2.032 H CYS 140 C SG CYS 148 1_555 H CYS 196 C SG CYS 204 1_555 IMMUNE SYSTEM cystine knot, immunoglobulin, growth/survival factor, immune system L SER 7 B SER 7 1 L PRO 8 B PRO 8 -3.61 L LEU 94 B LEU 94 1 L PRO 95 B PRO 95 4.61 L TYR 140 B TYR 140 1 L PRO 141 B PRO 141 2.97 H PHE 146 C PHE 154 1 H PRO 147 C PRO 155 -6.22 H GLU 148 C GLU 156 1 H PRO 149 C PRO 157 3.38 NGF_HUMAN UNP 1 122 P01138 SSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYC TTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKAVRRA 4EDW PDB 2 1 4EDW DIQMTQSPSSLSASVGDRVTITCRASQSISNNLNWYQQKPGKAPKLLIYYTSRFHSGVPSRFSGSGSGTDFTFTISSLQP EDIATYYCQQEHTLPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 4EDW PDB 3 1 4EDW QVQLQESGPGLVKPSETLSLTCTVSGFSLIGYDLNWIRQPPGKGLEWIGIIWGDGTTDYNSAVKSRVTISKDTSKNQFSL KLSSVTAADTAVYYCARGGYWYATSYYFDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTV SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSNFGTQTYTCNVDHKPSNTKVDKTVERKTSHHHHHHG 122 241 4EDW 1 120 P01138 V 1 1 120 1 214 4EDW 1 214 4EDW L 2 1 214 1 223 4EDW 1 223 4EDW H 3 1 231 2 4 2 4 6 4 4 4 4 6 4 4 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel V SER 17 A SER 17 V VAL 22 A VAL 22 V PHE 53 A PHE 53 V CYS 58 A CYS 58 V THR 27 A THR 27 V THR 29 A THR 29 V GLU 35 A GLU 35 V VAL 38 A VAL 38 V TRP 76 A TRP 76 V MET 92 A MET 92 V ALA 97 A ALA 97 V ARG 114 A ARG 114 V GLU 41 A GLU 41 V ASN 43 A ASN 43 V VAL 48 A VAL 48 V LYS 50 A LYS 50 L MET 4 B MET 4 L SER 7 B SER 7 L VAL 19 B VAL 19 L ALA 25 B ALA 25 L ASP 70 B ASP 70 L ILE 75 B ILE 75 L PHE 62 B PHE 62 L SER 67 B SER 67 L SER 10 B SER 10 L SER 14 B SER 14 L THR 102 B THR 102 L LYS 107 B LYS 107 L ALA 84 B ALA 84 L GLN 90 B GLN 90 L LEU 33 B LEU 33 L GLN 38 B GLN 38 L PRO 44 B PRO 44 L TYR 49 B TYR 49 L ARG 53 B ARG 53 L PHE 54 B PHE 54 L SER 10 B SER 10 L SER 14 B SER 14 L THR 102 B THR 102 L LYS 107 B LYS 107 L ALA 84 B ALA 84 L GLN 90 B GLN 90 L THR 97 B THR 97 L PHE 98 B PHE 98 L SER 114 B SER 114 L PHE 118 B PHE 118 L THR 129 B THR 129 L PHE 139 B PHE 139 L TYR 173 B TYR 173 L SER 182 B SER 182 L SER 159 B SER 159 L VAL 163 B VAL 163 L ALA 153 B ALA 153 L LEU 154 B LEU 154 L LYS 145 B LYS 145 L VAL 150 B VAL 150 L VAL 191 B VAL 191 L THR 197 B THR 197 L VAL 205 B VAL 205 L ASN 210 B ASN 210 H GLN 3 C GLN 3 H SER 7 C SER 7 H LEU 18 C LEU 18 H SER 25 C SER 25 H GLN 77 C GLN 77 H LEU 82 C LEU 82 H VAL 67 C VAL 67 H ASP 72 C ASP 72 H LEU 11 C LEU 11 H VAL 12 C VAL 12 H THR 107 C THR 115 H VAL 111 C VAL 119 H ALA 88 C ALA 91 H TRP 98 C TRP 101 H LEU 34 C LEU 34 H GLN 39 C GLN 39 H GLU 46 C GLU 46 H ILE 51 C ILE 51 H THR 57 C THR 57 H TYR 59 C TYR 59 H LEU 11 C LEU 11 H VAL 12 C VAL 12 H THR 107 C THR 115 H VAL 111 C VAL 119 H ALA 88 C ALA 91 H TRP 98 C TRP 101 H SER 100 C SER 105 H TRP 103 C TRP 111 B H SER 120 C SER 128 H LEU 124 C LEU 132 H ALA 136 C ALA 144 H TYR 145 C TYR 153 H TYR 176 C TYR 184 H VAL 184 C VAL 192 H VAL 163 C VAL 171 H THR 165 C THR 173 H SER 120 C SER 128 H LEU 124 C LEU 132 H ALA 136 C ALA 144 H TYR 145 C TYR 153 H TYR 176 C TYR 184 H VAL 184 C VAL 192 H VAL 169 C VAL 177 H LEU 170 C LEU 178 H THR 151 C THR 159 H TRP 154 C TRP 162 H THR 195 C THR 203 H HIS 200 C HIS 208 H THR 205 C THR 213 H THR 210 C THR 218 BINDING SITE FOR RESIDUE GOL H 301 Software 9 H PHE 166 C PHE 174 9 1_555 H PRO 167 C PRO 175 9 1_555 H VAL 169 C VAL 177 9 1_555 H SER 177 C SER 185 9 1_555 H LEU 178 C LEU 186 9 1_555 H SER 179 C SER 187 9 1_555 L GLN 160 B GLN 160 9 1_555 L SER 176 B SER 176 9 1_555 L THR 178 B THR 178 9 1_555 20 C 2 2 21