0.014499
0.000000
0.000000
0.000000
0.015825
0.000000
0.000000
0.000000
0.026660
0.00000
0.00000
0.00000
Stura, E.A.
Dive, V.
Devel, L.
Czarny, B.
Beau, F.
Vera, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
68.970
63.190
37.510
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C22 H20 N2 O4 S
408.470
N~2~-[4-(4-phenylthiophen-2-yl)benzoyl]-L-alpha-glutamine
non-polymer
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H5 N2 1
69.085
IMIDAZOLE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H8 O2
76.094
S-1,2-PROPANEDIOL
non-polymer
C3 H8 O2
76.094
R-1,2-PROPANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
O
N
76
N
C
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
N
N
85
N
C
N
86
N
O
Y
87
N
C
Y
88
N
C
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
S
Y
98
N
C
Y
99
N
C
Y
100
N
C
Y
101
N
C
Y
102
N
C
Y
103
N
C
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
N
C
N
175
N
C
N
176
N
O
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
C
N
184
N
O
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
Y
202
N
C
Y
203
N
N
Y
204
N
C
Y
205
N
C
Y
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
S
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
Y
243
N
N
Y
244
N
C
Y
245
N
N
Y
246
N
C
Y
247
N
C
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
N
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
C
N
306
N
S
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
C
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
C
N
334
R
C
N
335
N
C
N
336
N
O
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
O
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
R
C
N
405
N
O
N
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
N
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
N
455
N
O
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
N
473
N
C
N
474
N
C
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
Y
82
N
doub
Y
83
N
sing
Y
84
N
sing
Y
85
N
doub
Y
86
N
doub
Y
87
N
sing
N
88
N
sing
Y
89
N
doub
Y
90
N
sing
Y
91
N
sing
Y
92
N
doub
Y
93
N
sing
Y
94
N
sing
N
95
N
sing
Y
96
N
doub
Y
97
N
doub
Y
98
N
doub
Y
99
N
sing
Y
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
Y
200
N
sing
Y
201
N
doub
Y
202
N
doub
N
203
N
sing
Y
204
N
sing
N
205
N
sing
Y
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
sing
Y
234
N
sing
N
235
N
sing
Y
236
N
doub
N
237
N
sing
Y
238
N
sing
N
239
N
sing
Y
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
doub
Y
416
N
sing
Y
417
N
sing
N
418
N
sing
Y
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
Y
439
N
doub
Y
440
N
sing
Y
441
N
sing
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
doub
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
287
26647
26656
10.1074/jbc.M112.380782
22689580
Simple pseudo-dipeptides with a P2' glutamate: a novel inhibitor family of matrix metalloproteases and other metzincins.
2012
10.2210/pdb4efs/pdb
pdb_00004efs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
PIXEL
2012-02-17
PSI PILATUS 6M
SAGITALLY FOCUSED Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.918400
1.0
PROXIMA 1
SOLEIL
0.918400
SYNCHROTRON
SOLEIL BEAMLINE PROXIMA 1
17615.670
Macrophage metalloelastase
3.4.24.65
MMP-12 catalitic subunit (UNP RESIDUES 106-263)
F171D
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
408.470
N~2~-[4-(4-phenylthiophen-2-yl)benzoyl]-L-alpha-glutamine
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
76.094
R-1,2-PROPANEDIOL
1
syn
non-polymer
76.094
S-1,2-PROPANEDIOL
3
syn
non-polymer
69.085
IMIDAZOLE
1
syn
non-polymer
18.015
water
139
nat
water
MME, Macrophage elastase, ME, hME, Matrix metalloproteinase-12, MMP-12
no
no
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
HME, MMP12
9606
Homo sapiens
562
Escherichia coli
BL21
PET24A
1
2.32
46.98
VAPOR DIFFUSION, SITTING DROP
8.5
Protein solution - 0.53 mM F67D mutant of human MMP12 residues 106-263 in 0.1 M acetohydroxamic acid 0.003 M CaCl2, 0.200 M NaCl 0.02 M Tris-HCl, pH 7.5. Reservoir solution -27% PEG 10K,0.2 M imidazole malate cryoconditions - CryoProtX-Cryomix 7, 25% MPEG 5K, 0.1 M AAB 10/90, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
293.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-06-20
1
1
2012-10-17
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
RCSB
Y
RCSB
2012-03-30
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
E37
N~2~-[4-(4-phenylthiophen-2-yl)benzoyl]-L-alpha-glutamine
GOL
GLYCEROL
EDO
1,2-ETHANEDIOL
PGR
R-1,2-PROPANEDIOL
PGO
S-1,2-PROPANEDIOL
IMD
IMIDAZOLE
HOH
water
3LIK
PDB entry 3LIK
PDB
experimental model
ZN
500
2
ZN
ZN
301
A
ZN
501
2
ZN
ZN
302
A
CA
502
3
CA
CA
303
A
CA
503
3
CA
CA
304
A
CA
504
3
CA
CA
305
A
E37
1
4
E37
E37
306
A
GOL
1
5
GOL
GOL
307
A
EDO
2
6
EDO
EDO
308
A
PGR
3
7
PGR
PGR
309
A
PGO
4
8
PGO
PGO
310
A
PGO
5
8
PGO
PGO
311
A
IMD
6
9
IMD
IMD
312
A
EDO
7
6
EDO
EDO
313
A
PGO
8
8
PGO
PGO
314
A
HOH
1
10
HOH
HOH
401
A
HOH
2
10
HOH
HOH
402
A
HOH
3
10
HOH
HOH
403
A
HOH
4
10
HOH
HOH
404
A
HOH
5
10
HOH
HOH
405
A
HOH
6
10
HOH
HOH
406
A
HOH
7
10
HOH
HOH
407
A
HOH
8
10
HOH
HOH
408
A
HOH
9
10
HOH
HOH
409
A
HOH
10
10
HOH
HOH
410
A
HOH
11
10
HOH
HOH
411
A
HOH
12
10
HOH
HOH
412
A
HOH
13
10
HOH
HOH
413
A
HOH
14
10
HOH
HOH
414
A
HOH
15
10
HOH
HOH
415
A
HOH
16
10
HOH
HOH
416
A
HOH
17
10
HOH
HOH
417
A
HOH
18
10
HOH
HOH
418
A
HOH
19
10
HOH
HOH
419
A
HOH
20
10
HOH
HOH
420
A
HOH
21
10
HOH
HOH
421
A
HOH
22
10
HOH
HOH
422
A
HOH
23
10
HOH
HOH
423
A
HOH
24
10
HOH
HOH
424
A
HOH
25
10
HOH
HOH
425
A
HOH
26
10
HOH
HOH
426
A
HOH
27
10
HOH
HOH
427
A
HOH
28
10
HOH
HOH
428
A
HOH
29
10
HOH
HOH
429
A
HOH
30
10
HOH
HOH
430
A
HOH
31
10
HOH
HOH
431
A
HOH
32
10
HOH
HOH
432
A
HOH
33
10
HOH
HOH
433
A
HOH
34
10
HOH
HOH
434
A
HOH
35
10
HOH
HOH
435
A
HOH
36
10
HOH
HOH
436
A
HOH
37
10
HOH
HOH
437
A
HOH
38
10
HOH
HOH
438
A
HOH
39
10
HOH
HOH
439
A
HOH
40
10
HOH
HOH
440
A
HOH
41
10
HOH
HOH
441
A
HOH
42
10
HOH
HOH
442
A
HOH
43
10
HOH
HOH
443
A
HOH
44
10
HOH
HOH
444
A
HOH
45
10
HOH
HOH
445
A
HOH
46
10
HOH
HOH
446
A
HOH
47
10
HOH
HOH
447
A
HOH
48
10
HOH
HOH
448
A
HOH
49
10
HOH
HOH
449
A
HOH
50
10
HOH
HOH
450
A
HOH
51
10
HOH
HOH
451
A
HOH
52
10
HOH
HOH
452
A
HOH
53
10
HOH
HOH
453
A
HOH
54
10
HOH
HOH
454
A
HOH
55
10
HOH
HOH
455
A
HOH
56
10
HOH
HOH
456
A
HOH
57
10
HOH
HOH
457
A
HOH
58
10
HOH
HOH
458
A
HOH
59
10
HOH
HOH
459
A
HOH
60
10
HOH
HOH
460
A
HOH
61
10
HOH
HOH
461
A
HOH
62
10
HOH
HOH
462
A
HOH
63
10
HOH
HOH
463
A
HOH
64
10
HOH
HOH
464
A
HOH
65
10
HOH
HOH
465
A
HOH
66
10
HOH
HOH
466
A
HOH
67
10
HOH
HOH
467
A
HOH
68
10
HOH
HOH
468
A
HOH
69
10
HOH
HOH
469
A
HOH
70
10
HOH
HOH
470
A
HOH
71
10
HOH
HOH
471
A
HOH
72
10
HOH
HOH
472
A
HOH
73
10
HOH
HOH
473
A
HOH
74
10
HOH
HOH
474
A
HOH
75
10
HOH
HOH
475
A
HOH
76
10
HOH
HOH
476
A
HOH
77
10
HOH
HOH
477
A
HOH
78
10
HOH
HOH
478
A
HOH
79
10
HOH
HOH
479
A
HOH
80
10
HOH
HOH
480
A
HOH
81
10
HOH
HOH
481
A
HOH
82
10
HOH
HOH
482
A
HOH
83
10
HOH
HOH
483
A
HOH
84
10
HOH
HOH
484
A
HOH
85
10
HOH
HOH
485
A
HOH
86
10
HOH
HOH
486
A
HOH
87
10
HOH
HOH
487
A
HOH
88
10
HOH
HOH
488
A
HOH
89
10
HOH
HOH
489
A
HOH
90
10
HOH
HOH
490
A
HOH
91
10
HOH
HOH
491
A
HOH
92
10
HOH
HOH
492
A
HOH
93
10
HOH
HOH
493
A
HOH
94
10
HOH
HOH
494
A
HOH
95
10
HOH
HOH
495
A
HOH
96
10
HOH
HOH
496
A
HOH
97
10
HOH
HOH
497
A
HOH
98
10
HOH
HOH
498
A
HOH
99
10
HOH
HOH
499
A
HOH
100
10
HOH
HOH
500
A
HOH
101
10
HOH
HOH
501
A
HOH
102
10
HOH
HOH
502
A
HOH
103
10
HOH
HOH
503
A
HOH
104
10
HOH
HOH
504
A
HOH
105
10
HOH
HOH
505
A
HOH
106
10
HOH
HOH
506
A
HOH
107
10
HOH
HOH
507
A
HOH
108
10
HOH
HOH
508
A
HOH
109
10
HOH
HOH
509
A
HOH
110
10
HOH
HOH
510
A
HOH
111
10
HOH
HOH
511
A
HOH
112
10
HOH
HOH
512
A
HOH
113
10
HOH
HOH
513
A
HOH
114
10
HOH
HOH
514
A
HOH
115
10
HOH
HOH
515
A
HOH
116
10
HOH
HOH
516
A
HOH
117
10
HOH
HOH
517
A
HOH
118
10
HOH
HOH
518
A
HOH
119
10
HOH
HOH
519
A
HOH
120
10
HOH
HOH
520
A
HOH
121
10
HOH
HOH
521
A
HOH
122
10
HOH
HOH
522
A
HOH
123
10
HOH
HOH
523
A
HOH
124
10
HOH
HOH
524
A
HOH
125
10
HOH
HOH
525
A
HOH
126
10
HOH
HOH
526
A
HOH
127
10
HOH
HOH
527
A
HOH
128
10
HOH
HOH
528
A
HOH
129
10
HOH
HOH
529
A
HOH
130
10
HOH
HOH
530
A
HOH
131
10
HOH
HOH
531
A
HOH
132
10
HOH
HOH
532
A
HOH
133
10
HOH
HOH
533
A
HOH
134
10
HOH
HOH
534
A
HOH
135
10
HOH
HOH
535
A
HOH
136
10
HOH
HOH
536
A
HOH
137
10
HOH
HOH
537
A
HOH
138
10
HOH
HOH
538
A
HOH
139
10
HOH
HOH
539
A
MET
105
n
1
MET
105
A
GLY
106
n
2
GLY
106
A
PRO
107
n
3
PRO
107
A
VAL
108
n
4
VAL
108
A
TRP
109
n
5
TRP
109
A
ARG
110
n
6
ARG
110
A
LYS
111
n
7
LYS
111
A
HIS
112
n
8
HIS
112
A
TYR
113
n
9
TYR
113
A
ILE
114
n
10
ILE
114
A
THR
115
n
11
THR
115
A
TYR
116
n
12
TYR
116
A
ARG
117
n
13
ARG
117
A
ILE
118
n
14
ILE
118
A
ASN
119
n
15
ASN
119
A
ASN
120
n
16
ASN
120
A
TYR
121
n
17
TYR
121
A
THR
122
n
18
THR
122
A
PRO
123
n
19
PRO
123
A
ASP
124
n
20
ASP
124
A
MET
125
n
21
MET
125
A
ASN
126
n
22
ASN
126
A
ARG
127
n
23
ARG
127
A
GLU
128
n
24
GLU
128
A
ASP
129
n
25
ASP
129
A
VAL
130
n
26
VAL
130
A
ASP
131
n
27
ASP
131
A
TYR
132
n
28
TYR
132
A
ALA
133
n
29
ALA
133
A
ILE
134
n
30
ILE
134
A
ARG
135
n
31
ARG
135
A
LYS
136
n
32
LYS
136
A
ALA
137
n
33
ALA
137
A
PHE
138
n
34
PHE
138
A
GLN
139
n
35
GLN
139
A
VAL
140
n
36
VAL
140
A
TRP
141
n
37
TRP
141
A
SER
142
n
38
SER
142
A
ASN
143
n
39
ASN
143
A
VAL
144
n
40
VAL
144
A
THR
145
n
41
THR
145
A
PRO
146
n
42
PRO
146
A
LEU
147
n
43
LEU
147
A
LYS
148
n
44
LYS
148
A
PHE
149
n
45
PHE
149
A
SER
150
n
46
SER
150
A
LYS
151
n
47
LYS
151
A
ILE
152
n
48
ILE
152
A
ASN
153
n
49
ASN
153
A
THR
154
n
50
THR
154
A
GLY
155
n
51
GLY
155
A
MET
156
n
52
MET
156
A
ALA
157
n
53
ALA
157
A
ASP
158
n
54
ASP
158
A
ILE
159
n
55
ILE
159
A
LEU
160
n
56
LEU
160
A
VAL
161
n
57
VAL
161
A
VAL
162
n
58
VAL
162
A
PHE
163
n
59
PHE
163
A
ALA
164
n
60
ALA
164
A
ARG
165
n
61
ARG
165
A
GLY
166
n
62
GLY
166
A
ALA
167
n
63
ALA
167
A
HIS
168
n
64
HIS
168
A
GLY
169
n
65
GLY
169
A
ASP
170
n
66
ASP
170
A
ASP
171
n
67
ASP
171
A
HIS
172
n
68
HIS
172
A
ALA
173
n
69
ALA
173
A
PHE
174
n
70
PHE
174
A
ASP
175
n
71
ASP
175
A
GLY
176
n
72
GLY
176
A
LYS
177
n
73
LYS
177
A
GLY
178
n
74
GLY
178
A
GLY
179
n
75
GLY
179
A
ILE
180
n
76
ILE
180
A
LEU
181
n
77
LEU
181
A
ALA
182
n
78
ALA
182
A
HIS
183
n
79
HIS
183
A
ALA
184
n
80
ALA
184
A
PHE
185
n
81
PHE
185
A
GLY
186
n
82
GLY
186
A
PRO
187
n
83
PRO
187
A
GLY
188
n
84
GLY
188
A
SER
189
n
85
SER
189
A
GLY
190
n
86
GLY
190
A
ILE
191
n
87
ILE
191
A
GLY
192
n
88
GLY
192
A
GLY
193
n
89
GLY
193
A
ASP
194
n
90
ASP
194
A
ALA
195
n
91
ALA
195
A
HIS
196
n
92
HIS
196
A
PHE
197
n
93
PHE
197
A
ASP
198
n
94
ASP
198
A
GLU
199
n
95
GLU
199
A
ASP
200
n
96
ASP
200
A
GLU
201
n
97
GLU
201
A
PHE
202
n
98
PHE
202
A
TRP
203
n
99
TRP
203
A
THR
204
n
100
THR
204
A
THR
205
n
101
THR
205
A
HIS
206
n
102
HIS
206
A
SER
207
n
103
SER
207
A
GLY
208
n
104
GLY
208
A
GLY
209
n
105
GLY
209
A
THR
210
n
106
THR
210
A
ASN
211
n
107
ASN
211
A
LEU
212
n
108
LEU
212
A
PHE
213
n
109
PHE
213
A
LEU
214
n
110
LEU
214
A
THR
215
n
111
THR
215
A
ALA
216
n
112
ALA
216
A
VAL
217
n
113
VAL
217
A
HIS
218
n
114
HIS
218
A
GLU
219
n
115
GLU
219
A
ILE
220
n
116
ILE
220
A
GLY
221
n
117
GLY
221
A
HIS
222
n
118
HIS
222
A
SER
223
n
119
SER
223
A
LEU
224
n
120
LEU
224
A
GLY
225
n
121
GLY
225
A
LEU
226
n
122
LEU
226
A
GLY
227
n
123
GLY
227
A
HIS
228
n
124
HIS
228
A
SER
229
n
125
SER
229
A
SER
230
n
126
SER
230
A
ASP
231
n
127
ASP
231
A
PRO
232
n
128
PRO
232
A
LYS
233
n
129
LYS
233
A
ALA
234
n
130
ALA
234
A
VAL
235
n
131
VAL
235
A
MET
236
n
132
MET
236
A
PHE
237
n
133
PHE
237
A
PRO
238
n
134
PRO
238
A
THR
239
n
135
THR
239
A
TYR
240
n
136
TYR
240
A
LYS
241
n
137
LYS
241
A
TYR
242
n
138
TYR
242
A
VAL
243
n
139
VAL
243
A
ASP
244
n
140
ASP
244
A
ILE
245
n
141
ILE
245
A
ASN
246
n
142
ASN
246
A
THR
247
n
143
THR
247
A
PHE
248
n
144
PHE
248
A
ARG
249
n
145
ARG
249
A
LEU
250
n
146
LEU
250
A
SER
251
n
147
SER
251
A
ALA
252
n
148
ALA
252
A
ASP
253
n
149
ASP
253
A
ASP
254
n
150
ASP
254
A
ILE
255
n
151
ILE
255
A
ARG
256
n
152
ARG
256
A
GLY
257
n
153
GLY
257
A
ILE
258
n
154
ILE
258
A
GLN
259
n
155
GLN
259
A
SER
260
n
156
SER
260
A
LEU
261
n
157
LEU
261
A
TYR
262
n
158
TYR
262
A
GLY
263
n
159
GLY
263
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
ASP
124
A
OD2
ASP
20
1_555
49.9
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
142.1
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
160.8
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
84.5
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
84.9
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
82.5
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
79.9
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
123.8
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
75.1
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
117.6
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
455
P
O
HOH
1_555
96.5
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
455
P
O
HOH
1_555
81.2
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
455
P
O
HOH
1_555
107.1
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
455
P
O
HOH
1_555
160.8
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
455
P
O
HOH
1_555
81.4
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
456
P
O
HOH
1_555
132.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
456
P
O
HOH
1_555
83.0
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
456
P
O
HOH
1_555
82.9
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
456
P
O
HOH
1_555
91.0
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
456
P
O
HOH
1_555
140.4
A
HOH
455
P
O
HOH
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
456
P
O
HOH
1_555
74.2
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
190
A
O
GLY
86
1_555
167.8
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
93.3
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
93.7
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD1
ASP
90
1_555
89.1
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD1
ASP
90
1_555
100.9
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD1
ASP
90
1_555
89.4
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
431
P
O
HOH
1_555
83.1
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
431
P
O
HOH
1_555
88.1
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
431
P
O
HOH
1_555
81.5
A
ASP
194
A
OD1
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
431
P
O
HOH
1_555
167.6
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
435
P
O
HOH
1_555
87.5
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
435
P
O
HOH
1_555
84.8
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
435
P
O
HOH
1_555
175.6
A
ASP
194
A
OD1
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
435
P
O
HOH
1_555
94.9
A
HOH
431
P
O
HOH
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
435
P
O
HOH
1_555
94.4
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
ASP
170
A
OD1
ASP
66
1_555
109.2
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
113.6
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
114.8
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
108.4
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
95.9
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
113.5
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
176
A
O
GLY
72
1_555
88.5
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
84.3
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
87.7
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
92.4
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
179.0
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
91.9
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
96.5
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
88.2
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
175.8
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD2
ASP
94
1_555
92.1
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
172.1
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
94.0
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
88.2
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
85.0
A
ASP
198
A
OD2
ASP
94
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
91.1
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
118
1_555
103.1
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
108.9
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
99.5
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4
E37
1_555
122.7
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4
E37
1_555
124.5
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4
E37
1_555
93.9
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4E
E37
1_555
98.3
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4E
E37
1_555
91.3
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4E
E37
1_555
147.3
A
E37
306
G
O4
E37
1_555
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4E
E37
1_555
55.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
148
A
O
LYS
44
A
N
ILE
114
A
N
ILE
10
A
N
ARG
117
A
N
ARG
13
A
O
VAL
161
A
O
VAL
57
A
N
VAL
162
A
N
VAL
58
A
O
PHE
197
A
O
PHE
93
A
O
HIS
196
A
O
HIS
92
A
N
HIS
183
A
N
HIS
79
A
N
THR
204
A
N
THR
100
A
O
THR
210
A
O
THR
106
1
A
HOH
491
P
HOH
20.811
-1.05
0.00
0.00
-0.31
0.00
1.35
0.971
0.960
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.19044
0.15368
0.15554
1.63
46.59
1056
21260
20063
5.0
100.00
1.538
0.053
RANDOM
1
Isotropic
THROUGHOUT
0
-3
RIGID BODY
0.083
0.086
0.80
0.80
1.40
PDB entry 3LIK
MAXIMUM LIKELIHOOD
MASK
1.63
46.59
139
1458
73
0
1246
0.029
0.021
1378
2.607
1.958
1856
6.638
5.000
163
35.385
22.769
65
14.826
15.000
200
21.192
15.000
9
0.182
0.200
187
0.016
0.021
1080
1.613
1.500
799
2.682
2.000
1280
3.740
3.000
579
5.809
4.500
576
0.365
0.263
1.669
71
1352
20
100.00
25.023
1.63
46.59
4EFS
21260
20710
0
0
0.086
0.083
1
18.72
8.72
97.4
0.726
1.63
1.72
3.31
3230
0.683
1
8.55
99.3
0.037
4.86
46.59
48.38
894
0.035
1
7.49
99.7
0.041
3.44
4.86
48.39
1500
0.039
1
8.18
99.9
0.057
2.81
3.44
36.78
1894
0.053
1
8.42
99.9
0.080
2.44
2.81
27.47
2223
0.075
1
8.81
100.0
0.115
2.18
2.44
20.11
2482
0.108
1
8.99
99.9
0.159
1.99
2.18
15.16
2751
0.149
1
8.97
100.0
0.267
1.84
1.99
9.57
2973
0.252
1
8.94
99.8
0.453
1.72
1.84
5.68
3172
0.427
1
8.99
99.2
data collection
DNA
refinement
REFMAC
5.5.0109
data reduction
XDS
data scaling
XSCALE
phasing
REFMAC
5.5.0109
Human MMP12 in complex with L-glutamate motif inhibitor
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
8
N
N
9
N
N
6
N
N
8
N
N
10
N
N
A
ASN
126
A
ASN
22
HELX_P
A
ASN
143
A
ASN
39
1
1
18
A
LEU
212
A
LEU
108
HELX_P
A
LEU
224
A
LEU
120
1
2
13
A
ASP
244
A
ASP
140
HELX_P
A
PHE
248
A
PHE
144
5
3
5
A
SER
251
A
SER
147
HELX_P
A
TYR
262
A
TYR
158
1
4
12
metalc
2.395
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.713
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.378
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.067
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
1.855
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.330
A
ASP
175
A
OD1
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.316
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.344
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.256
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.089
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.307
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.302
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.436
A
ASP
194
A
OD1
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.071
A
HIS
196
A
ND1
HIS
92
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.226
A
ASP
198
A
OD2
ASP
94
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.377
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.414
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.384
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.295
A
GLU
201
A
OE2
GLU
97
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.009
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.020
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.028
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.183
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4
E37
1_555
metalc
2.686
A
ZN
301
B
ZN
ZN
1_555
A
E37
306
G
O4E
E37
1_555
metalc
2.458
A
CA
303
D
CA
CA
1_555
A
HOH
431
P
O
HOH
1_555
metalc
2.275
A
CA
303
D
CA
CA
1_555
A
HOH
435
P
O
HOH
1_555
metalc
2.419
A
CA
304
E
CA
CA
1_555
A
HOH
455
P
O
HOH
1_555
metalc
2.334
A
CA
304
E
CA
CA
1_555
A
HOH
456
P
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
pseudo peptides, potent inhibitors, METZINCIN, Zinc protease, L-glutamate motif inhibitors, HYDROLASE-HYDROLASE INHIBITOR complex
MMP12_HUMAN
UNP
1
106
P39900
GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAF
GPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
106
263
4EFS
106
263
P39900
A
1
2
159
1
initiating methionine
MET
105
4EFS
A
P39900
UNP
1
1
PHE
engineered mutation
ASP
171
4EFS
A
P39900
UNP
171
67
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
LYS
148
A
LYS
44
A
LYS
151
A
LYS
47
A
TYR
113
A
TYR
9
A
ILE
118
A
ILE
14
A
ILE
159
A
ILE
55
A
ALA
164
A
ALA
60
A
ALA
195
A
ALA
91
A
ASP
198
A
ASP
94
A
ALA
182
A
ALA
78
A
ALA
184
A
ALA
80
A
TRP
203
A
TRP
99
A
THR
204
A
THR
100
A
THR
210
A
THR
106
A
ASN
211
A
ASN
107
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
4
BINDING SITE FOR RESIDUE ZN A 302
A
ZN
302
Software
4
BINDING SITE FOR RESIDUE CA A 303
A
CA
303
Software
6
BINDING SITE FOR RESIDUE CA A 304
A
CA
304
Software
5
BINDING SITE FOR RESIDUE CA A 305
A
CA
305
Software
6
BINDING SITE FOR RESIDUE E37 A 306
A
E37
306
Software
22
BINDING SITE FOR RESIDUE GOL A 307
A
GOL
307
Software
6
BINDING SITE FOR RESIDUE EDO A 308
A
EDO
308
Software
4
BINDING SITE FOR RESIDUE PGR A 309
A
PGR
309
Software
5
BINDING SITE FOR RESIDUE PGO A 310
A
PGO
310
Software
5
BINDING SITE FOR RESIDUE PGO A 311
A
PGO
311
Software
6
BINDING SITE FOR RESIDUE IMD A 312
A
IMD
312
Software
4
BINDING SITE FOR RESIDUE EDO A 313
A
EDO
313
Software
2
BINDING SITE FOR RESIDUE PGO A 314
A
PGO
314
Software
5
A
HIS
218
A
HIS
114
4
1_555
A
HIS
222
A
HIS
118
4
1_555
A
HIS
228
A
HIS
124
4
1_555
A
E37
306
G
E37
4
1_555
A
HIS
168
A
HIS
64
4
1_555
A
ASP
170
A
ASP
66
4
1_555
A
HIS
183
A
HIS
79
4
1_555
A
HIS
196
A
HIS
92
4
1_555
A
ASP
158
A
ASP
54
6
1_555
A
GLY
190
A
GLY
86
6
1_555
A
GLY
192
A
GLY
88
6
1_555
A
ASP
194
A
ASP
90
6
1_555
A
HOH
431
P
HOH
6
1_555
A
HOH
435
P
HOH
6
1_555
A
ASP
124
A
ASP
20
5
1_555
A
GLU
199
A
GLU
95
5
1_555
A
GLU
201
A
GLU
97
5
1_555
A
HOH
455
P
HOH
5
1_555
A
HOH
456
P
HOH
5
1_555
A
ASP
175
A
ASP
71
6
1_555
A
GLY
176
A
GLY
72
6
1_555
A
GLY
178
A
GLY
74
6
1_555
A
ILE
180
A
ILE
76
6
1_555
A
ASP
198
A
ASP
94
6
1_555
A
GLU
201
A
GLU
97
6
1_555
A
THR
154
A
THR
50
22
3_445
A
GLY
155
A
GLY
51
22
3_445
A
ILE
180
A
ILE
76
22
1_555
A
LEU
181
A
LEU
77
22
1_555
A
ALA
182
A
ALA
78
22
1_555
A
LEU
214
A
LEU
110
22
1_555
A
HIS
218
A
HIS
114
22
1_555
A
GLU
219
A
GLU
115
22
1_555
A
HIS
222
A
HIS
118
22
1_555
A
HIS
228
A
HIS
124
22
1_555
A
PRO
232
A
PRO
128
22
1_555
A
ALA
234
A
ALA
130
22
1_555
A
VAL
235
A
VAL
131
22
1_555
A
PRO
238
A
PRO
134
22
1_555
A
THR
239
A
THR
135
22
1_555
A
TYR
240
A
TYR
136
22
1_555
A
LYS
241
A
LYS
137
22
1_555
A
ZN
301
B
ZN
22
1_555
A
PGR
309
J
PGR
22
1_555
A
PGO
310
K
PGO
22
1_555
A
HOH
416
P
HOH
22
1_555
A
HOH
438
P
HOH
22
1_555
A
TYR
132
A
TYR
28
6
1_555
A
THR
205
A
THR
101
6
1_555
A
ASN
211
A
ASN
107
6
1_555
A
PHE
213
A
PHE
109
6
1_555
A
ILE
245
A
ILE
141
6
1_555
A
HOH
411
P
HOH
6
1_555
A
HIS
222
A
HIS
118
4
1_555
A
GLY
227
A
GLY
123
4
1_555
A
HIS
228
A
HIS
124
4
1_555
A
HOH
517
P
HOH
4
1_555
A
THR
154
A
THR
50
5
3_445
A
HIS
228
A
HIS
124
5
1_555
A
PRO
238
A
PRO
134
5
1_555
A
E37
306
G
E37
5
1_555
A
HOH
443
P
HOH
5
1_555
A
GLY
179
A
GLY
75
5
1_555
A
PRO
238
A
PRO
134
5
1_555
A
THR
239
A
THR
135
5
1_555
A
TYR
240
A
TYR
136
5
1_555
A
E37
306
G
E37
5
1_555
A
HIS
168
A
HIS
64
6
4_545
A
GLY
169
A
GLY
65
6
4_545
A
HIS
196
A
HIS
92
6
4_545
A
ILE
255
A
ILE
151
6
1_555
A
HOH
437
P
HOH
6
4_545
A
HOH
494
P
HOH
6
1_555
A
HIS
172
A
HIS
68
4
1_555
A
HIS
183
A
HIS
79
4
1_555
A
ALA
184
A
ALA
80
4
1_555
A
PHE
185
A
PHE
81
4
1_555
A
ASN
119
A
ASN
15
2
1_555
A
ARG
127
A
ARG
23
2
1_555
A
VAL
108
A
VAL
4
5
1_555
A
TRP
109
A
TRP
5
5
1_555
A
ARG
110
A
ARG
6
5
1_555
A
HOH
433
P
HOH
5
1_555
A
HOH
519
P
HOH
5
1_555
18
P 21 21 2