0.016186
0.000000
0.000000
0.000000
0.014482
0.000000
0.000000
0.000000
0.009427
0.000000
0.000000
0.000000
Emptage, R.P.
Daughtry, K.D.
Pemble IV, C.W.
Raetz, C.R.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
61.783
69.049
106.079
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
S
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
Y
189
N
C
Y
190
N
N
Y
191
N
C
Y
192
N
C
Y
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
S
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
S
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
C
N
302
S
C
N
303
N
O
N
304
N
C
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
R
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
N
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
N
446
N
C
N
447
N
C
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
Y
186
N
sing
Y
187
N
doub
Y
188
N
doub
N
189
N
sing
Y
190
N
sing
N
191
N
sing
Y
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
Y
412
N
doub
Y
413
N
sing
Y
414
N
sing
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
109
12956
12961
10.1073/pnas.1206072109
22826246
Crystal structure of LpxK, the 4'-kinase of lipid A biosynthesis and atypical P-loop kinase functioning at the membrane interface.
2012
10.2210/pdb4ehx/pdb
pdb_00004ehx
100
1
CCD
2011-06-12
MARMOSAIC 225 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
22-BM
APS
1.00
SYNCHROTRON
APS BEAMLINE 22-BM
36597.730
Tetraacyldisaccharide 4'-kinase
2.7.1.130
1
man
polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
92.094
GLYCEROL
8
syn
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
2
syn
non-polymer
18.015
water
208
nat
water
Lipid A 4'-kinase
no
no
MLRSSLLPFSYLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKG
TLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGLLALEKLSPEVFILDDGFQHRKLHRDLNILLLKKKDL
KDRLLPAGNLREPLKEIRRADALVLTYQEVEPFEFFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFSGLGDNGQ
FRKVLKNLGIKVKEFMSFPDHYDYSDFTPEEGEIYLTTPKDLIKLQGYENVFALNFKVKLEREEKLKKLIYRIFY
MLRSSLLPFSYLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKG
TLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGLLALEKLSPEVFILDDGFQHRKLHRDLNILLLKKKDL
KDRLLPAGNLREPLKEIRRADALVLTYQEVEPFEFFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFSGLGDNGQ
FRKVLKNLGIKVKEFMSFPDHYDYSDFTPEEGEIYLTTPKDLIKLQGYENVFALNFKVKLEREEKLKKLIYRIFY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
VF5
sample
aq_1656, lpxK
224324
Aquifex aeolicus
562
Escherichia coli
C41(DE3)
plasmid
pET21b
1
3.09
60.21
hanging drop, vapor diffusion
7.5
The reservoir solution contained 60% MPD and 0.1 M Hepes pH 7.5. The drop contained ~1 mg/ml protein, 54% MPD, 90 mM Hepes pH 7.5, 2 mM Hepes pH 8.0, 75 mM NaCl, 2% glycerol, ~0.03% DDM, 2 mM MgCl2, 0.4 mM AMP-PNP, 0.4 mM methyl-2-acetamido-2-deoxy-B-D-glucopyranoside. hanging drop, vapor diffusion, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-08-29
1
1
2017-11-15
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-04-04
REL
REL
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
GOL
GLYCEROL
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
4EHW
PDB ENTRY 4EHW
PDB
experimental model
EPE
400
2
EPE
EPE
401
A
GOL
402
3
GOL
GOL
402
A
GOL
403
3
GOL
GOL
403
A
MPD
404
4
MPD
MPD
404
A
GOL
405
3
GOL
GOL
405
A
GOL
406
3
GOL
GOL
406
A
GOL
407
3
GOL
GOL
407
A
GOL
408
3
GOL
GOL
408
A
MPD
401
4
MPD
MPD
409
A
GOL
409
3
GOL
GOL
410
A
GOL
410
3
GOL
GOL
411
A
HOH
1
5
HOH
HOH
501
A
HOH
2
5
HOH
HOH
502
A
HOH
3
5
HOH
HOH
503
A
HOH
4
5
HOH
HOH
504
A
HOH
5
5
HOH
HOH
505
A
HOH
6
5
HOH
HOH
506
A
HOH
7
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
9
5
HOH
HOH
509
A
HOH
10
5
HOH
HOH
510
A
HOH
11
5
HOH
HOH
511
A
HOH
12
5
HOH
HOH
512
A
HOH
13
5
HOH
HOH
513
A
HOH
14
5
HOH
HOH
514
A
HOH
15
5
HOH
HOH
515
A
HOH
16
5
HOH
HOH
516
A
HOH
17
5
HOH
HOH
517
A
HOH
18
5
HOH
HOH
518
A
HOH
19
5
HOH
HOH
519
A
HOH
20
5
HOH
HOH
520
A
HOH
21
5
HOH
HOH
521
A
HOH
22
5
HOH
HOH
522
A
HOH
23
5
HOH
HOH
523
A
HOH
24
5
HOH
HOH
524
A
HOH
25
5
HOH
HOH
525
A
HOH
26
5
HOH
HOH
526
A
HOH
27
5
HOH
HOH
527
A
HOH
28
5
HOH
HOH
528
A
HOH
29
5
HOH
HOH
529
A
HOH
30
5
HOH
HOH
530
A
HOH
31
5
HOH
HOH
531
A
HOH
32
5
HOH
HOH
532
A
HOH
33
5
HOH
HOH
533
A
HOH
34
5
HOH
HOH
534
A
HOH
35
5
HOH
HOH
535
A
HOH
36
5
HOH
HOH
536
A
HOH
37
5
HOH
HOH
537
A
HOH
38
5
HOH
HOH
538
A
HOH
39
5
HOH
HOH
539
A
HOH
40
5
HOH
HOH
540
A
HOH
41
5
HOH
HOH
541
A
HOH
42
5
HOH
HOH
542
A
HOH
43
5
HOH
HOH
543
A
HOH
44
5
HOH
HOH
544
A
HOH
45
5
HOH
HOH
545
A
HOH
46
5
HOH
HOH
546
A
HOH
47
5
HOH
HOH
547
A
HOH
48
5
HOH
HOH
548
A
HOH
49
5
HOH
HOH
549
A
HOH
50
5
HOH
HOH
550
A
HOH
51
5
HOH
HOH
551
A
HOH
52
5
HOH
HOH
552
A
HOH
53
5
HOH
HOH
553
A
HOH
54
5
HOH
HOH
554
A
HOH
55
5
HOH
HOH
555
A
HOH
56
5
HOH
HOH
556
A
HOH
57
5
HOH
HOH
557
A
HOH
58
5
HOH
HOH
558
A
HOH
59
5
HOH
HOH
559
A
HOH
60
5
HOH
HOH
560
A
HOH
61
5
HOH
HOH
561
A
HOH
62
5
HOH
HOH
562
A
HOH
63
5
HOH
HOH
563
A
HOH
64
5
HOH
HOH
564
A
HOH
65
5
HOH
HOH
565
A
HOH
66
5
HOH
HOH
566
A
HOH
67
5
HOH
HOH
567
A
HOH
68
5
HOH
HOH
568
A
HOH
69
5
HOH
HOH
569
A
HOH
70
5
HOH
HOH
570
A
HOH
71
5
HOH
HOH
571
A
HOH
72
5
HOH
HOH
572
A
HOH
73
5
HOH
HOH
573
A
HOH
74
5
HOH
HOH
574
A
HOH
75
5
HOH
HOH
575
A
HOH
76
5
HOH
HOH
576
A
HOH
77
5
HOH
HOH
577
A
HOH
78
5
HOH
HOH
578
A
HOH
79
5
HOH
HOH
579
A
HOH
80
5
HOH
HOH
580
A
HOH
81
5
HOH
HOH
581
A
HOH
82
5
HOH
HOH
582
A
HOH
83
5
HOH
HOH
583
A
HOH
84
5
HOH
HOH
584
A
HOH
85
5
HOH
HOH
585
A
HOH
86
5
HOH
HOH
586
A
HOH
87
5
HOH
HOH
587
A
HOH
88
5
HOH
HOH
588
A
HOH
89
5
HOH
HOH
589
A
HOH
90
5
HOH
HOH
590
A
HOH
91
5
HOH
HOH
591
A
HOH
92
5
HOH
HOH
592
A
HOH
93
5
HOH
HOH
593
A
HOH
94
5
HOH
HOH
594
A
HOH
95
5
HOH
HOH
595
A
HOH
96
5
HOH
HOH
596
A
HOH
97
5
HOH
HOH
597
A
HOH
98
5
HOH
HOH
598
A
HOH
99
5
HOH
HOH
599
A
HOH
100
5
HOH
HOH
600
A
HOH
101
5
HOH
HOH
601
A
HOH
102
5
HOH
HOH
602
A
HOH
103
5
HOH
HOH
603
A
HOH
104
5
HOH
HOH
604
A
HOH
105
5
HOH
HOH
605
A
HOH
106
5
HOH
HOH
606
A
HOH
107
5
HOH
HOH
607
A
HOH
108
5
HOH
HOH
608
A
HOH
109
5
HOH
HOH
609
A
HOH
110
5
HOH
HOH
610
A
HOH
111
5
HOH
HOH
611
A
HOH
112
5
HOH
HOH
612
A
HOH
113
5
HOH
HOH
613
A
HOH
114
5
HOH
HOH
614
A
HOH
115
5
HOH
HOH
615
A
HOH
116
5
HOH
HOH
616
A
HOH
117
5
HOH
HOH
617
A
HOH
118
5
HOH
HOH
618
A
HOH
119
5
HOH
HOH
619
A
HOH
120
5
HOH
HOH
620
A
HOH
121
5
HOH
HOH
621
A
HOH
122
5
HOH
HOH
622
A
HOH
123
5
HOH
HOH
623
A
HOH
124
5
HOH
HOH
624
A
HOH
125
5
HOH
HOH
625
A
HOH
126
5
HOH
HOH
626
A
HOH
127
5
HOH
HOH
627
A
HOH
128
5
HOH
HOH
628
A
HOH
129
5
HOH
HOH
629
A
HOH
130
5
HOH
HOH
630
A
HOH
131
5
HOH
HOH
631
A
HOH
132
5
HOH
HOH
632
A
HOH
133
5
HOH
HOH
633
A
HOH
134
5
HOH
HOH
634
A
HOH
135
5
HOH
HOH
635
A
HOH
136
5
HOH
HOH
636
A
HOH
137
5
HOH
HOH
637
A
HOH
138
5
HOH
HOH
638
A
HOH
139
5
HOH
HOH
639
A
HOH
140
5
HOH
HOH
640
A
HOH
141
5
HOH
HOH
641
A
HOH
142
5
HOH
HOH
642
A
HOH
143
5
HOH
HOH
643
A
HOH
144
5
HOH
HOH
644
A
HOH
145
5
HOH
HOH
645
A
HOH
146
5
HOH
HOH
646
A
HOH
147
5
HOH
HOH
647
A
HOH
148
5
HOH
HOH
648
A
HOH
149
5
HOH
HOH
649
A
HOH
150
5
HOH
HOH
650
A
HOH
151
5
HOH
HOH
651
A
HOH
152
5
HOH
HOH
652
A
HOH
153
5
HOH
HOH
653
A
HOH
154
5
HOH
HOH
654
A
HOH
155
5
HOH
HOH
655
A
HOH
156
5
HOH
HOH
656
A
HOH
157
5
HOH
HOH
657
A
HOH
158
5
HOH
HOH
658
A
HOH
159
5
HOH
HOH
659
A
HOH
160
5
HOH
HOH
660
A
HOH
161
5
HOH
HOH
661
A
HOH
162
5
HOH
HOH
662
A
HOH
163
5
HOH
HOH
663
A
HOH
164
5
HOH
HOH
664
A
HOH
165
5
HOH
HOH
665
A
HOH
166
5
HOH
HOH
666
A
HOH
167
5
HOH
HOH
667
A
HOH
168
5
HOH
HOH
668
A
HOH
169
5
HOH
HOH
669
A
HOH
170
5
HOH
HOH
670
A
HOH
171
5
HOH
HOH
671
A
HOH
172
5
HOH
HOH
672
A
HOH
173
5
HOH
HOH
673
A
HOH
174
5
HOH
HOH
674
A
HOH
175
5
HOH
HOH
675
A
HOH
176
5
HOH
HOH
676
A
HOH
177
5
HOH
HOH
677
A
HOH
178
5
HOH
HOH
678
A
HOH
179
5
HOH
HOH
679
A
HOH
180
5
HOH
HOH
680
A
HOH
181
5
HOH
HOH
681
A
HOH
182
5
HOH
HOH
682
A
HOH
183
5
HOH
HOH
683
A
HOH
184
5
HOH
HOH
684
A
HOH
185
5
HOH
HOH
685
A
HOH
186
5
HOH
HOH
686
A
HOH
187
5
HOH
HOH
687
A
HOH
188
5
HOH
HOH
688
A
HOH
189
5
HOH
HOH
689
A
HOH
190
5
HOH
HOH
690
A
HOH
191
5
HOH
HOH
691
A
HOH
192
5
HOH
HOH
692
A
HOH
193
5
HOH
HOH
693
A
HOH
194
5
HOH
HOH
694
A
HOH
195
5
HOH
HOH
695
A
HOH
196
5
HOH
HOH
696
A
HOH
197
5
HOH
HOH
697
A
HOH
198
5
HOH
HOH
698
A
HOH
199
5
HOH
HOH
699
A
HOH
200
5
HOH
HOH
700
A
HOH
201
5
HOH
HOH
701
A
HOH
202
5
HOH
HOH
702
A
HOH
203
5
HOH
HOH
703
A
HOH
204
5
HOH
HOH
704
A
HOH
205
5
HOH
HOH
705
A
HOH
206
5
HOH
HOH
706
A
HOH
207
5
HOH
HOH
707
A
HOH
208
5
HOH
HOH
708
A
2.500
2.500
42.240
42.240
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
ARG
3
n
3
ARG
3
A
SER
4
n
4
SER
4
A
SER
5
n
5
SER
5
A
LEU
6
n
6
LEU
6
A
LEU
7
n
7
LEU
7
A
PRO
8
n
8
PRO
8
A
PHE
9
n
9
PHE
9
A
SER
10
n
10
SER
10
A
TYR
11
n
11
TYR
11
A
LEU
12
n
12
LEU
12
A
TYR
13
n
13
TYR
13
A
GLU
14
n
14
GLU
14
A
LYS
15
n
15
LYS
15
A
ILE
16
n
16
ILE
16
A
ILE
17
n
17
ILE
17
A
ASN
18
n
18
ASN
18
A
PHE
19
n
19
PHE
19
A
ARG
20
n
20
ARG
20
A
ASN
21
n
21
ASN
21
A
THR
22
n
22
THR
22
A
LEU
23
n
23
LEU
23
A
TYR
24
n
24
TYR
24
A
ASP
25
n
25
ASP
25
A
LYS
26
n
26
LYS
26
A
GLY
27
n
27
GLY
27
A
PHE
28
n
28
PHE
28
A
LEU
29
n
29
LEU
29
A
LYS
30
n
30
LYS
30
A
ILE
31
n
31
ILE
31
A
LYS
32
n
32
LYS
32
A
LYS
33
n
33
LYS
33
A
LEU
34
n
34
LEU
34
A
PRO
35
n
35
PRO
35
A
VAL
36
n
36
VAL
36
A
PRO
37
n
37
PRO
37
A
VAL
38
n
38
VAL
38
A
ILE
39
n
39
ILE
39
A
SER
40
n
40
SER
40
A
VAL
41
n
41
VAL
41
A
GLY
42
n
42
GLY
42
A
ASN
43
n
43
ASN
43
A
LEU
44
n
44
LEU
44
A
SER
45
n
45
SER
45
A
VAL
46
n
46
VAL
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
SER
49
n
49
SER
49
A
GLY
50
n
50
GLY
50
A
LYS
51
n
51
LYS
51
A
THR
52
n
52
THR
52
A
SER
53
n
53
SER
53
A
PHE
54
n
54
PHE
54
A
VAL
55
n
55
VAL
55
A
MET
56
n
56
MET
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
ALA
59
n
59
ALA
59
A
ASP
60
n
60
ASP
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
LYS
63
n
63
LYS
63
A
ASP
64
n
64
ASP
64
A
LYS
65
n
65
LYS
65
A
ARG
66
n
66
ARG
66
A
VAL
67
n
67
VAL
67
A
CYS
68
n
68
CYS
68
A
ILE
69
n
69
ILE
69
A
LEU
70
n
70
LEU
70
A
SER
71
n
71
SER
71
A
ARG
72
n
72
ARG
72
A
GLY
73
n
73
GLY
73
A
TYR
74
n
74
TYR
74
A
LYS
75
n
75
LYS
75
A
ARG
76
n
76
ARG
76
A
LYS
77
n
77
LYS
77
A
SER
78
n
78
SER
78
A
LYS
79
n
79
LYS
79
A
GLY
80
n
80
GLY
80
A
THR
81
n
81
THR
81
A
LEU
82
n
82
LEU
82
A
ILE
83
n
83
ILE
83
A
VAL
84
n
84
VAL
84
A
SER
85
n
85
SER
85
A
GLU
86
n
86
GLU
86
A
TYR
87
n
87
TYR
87
A
GLY
88
n
88
GLY
88
A
ASN
89
n
89
ASN
89
A
LEU
90
n
90
LEU
90
A
LYS
91
n
91
LYS
91
A
VAL
92
n
92
VAL
92
A
SER
93
n
93
SER
93
A
TRP
94
n
94
TRP
94
A
GLU
95
n
95
GLU
95
A
GLU
96
n
96
GLU
96
A
ALA
97
n
97
ALA
97
A
GLY
98
n
98
GLY
98
A
ASP
99
n
99
ASP
99
A
GLU
100
n
100
GLU
100
A
PRO
101
n
101
PRO
101
A
TYR
102
n
102
TYR
102
A
LEU
103
n
103
LEU
103
A
MET
104
n
104
MET
104
A
ALA
105
n
105
ALA
105
A
LYS
106
n
106
LYS
106
A
LEU
107
n
107
LEU
107
A
LEU
108
n
108
LEU
108
A
PRO
109
n
109
PRO
109
A
HIS
110
n
110
HIS
110
A
VAL
111
n
111
VAL
111
A
SER
112
n
112
SER
112
A
VAL
113
n
113
VAL
113
A
VAL
114
n
114
VAL
114
A
ALA
115
n
115
ALA
115
A
SER
116
n
116
SER
116
A
GLU
117
n
117
GLU
117
A
ASP
118
n
118
ASP
118
A
ARG
119
n
119
ARG
119
A
TYR
120
n
120
TYR
120
A
LYS
121
n
121
LYS
121
A
GLY
122
n
122
GLY
122
A
GLY
123
n
123
GLY
123
A
LEU
124
n
124
LEU
124
A
LEU
125
n
125
LEU
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
GLU
128
n
128
GLU
128
A
LYS
129
n
129
LYS
129
A
LEU
130
n
130
LEU
130
A
SER
131
n
131
SER
131
A
PRO
132
n
132
PRO
132
A
GLU
133
n
133
GLU
133
A
VAL
134
n
134
VAL
134
A
PHE
135
n
135
PHE
135
A
ILE
136
n
136
ILE
136
A
LEU
137
n
137
LEU
137
A
ASP
138
n
138
ASP
138
A
ASP
139
n
139
ASP
139
A
GLY
140
n
140
GLY
140
A
PHE
141
n
141
PHE
141
A
GLN
142
n
142
GLN
142
A
HIS
143
n
143
HIS
143
A
ARG
144
n
144
ARG
144
A
LYS
145
n
145
LYS
145
A
LEU
146
n
146
LEU
146
A
HIS
147
n
147
HIS
147
A
ARG
148
n
148
ARG
148
A
ASP
149
n
149
ASP
149
A
LEU
150
n
150
LEU
150
A
ASN
151
n
151
ASN
151
A
ILE
152
n
152
ILE
152
A
LEU
153
n
153
LEU
153
A
LEU
154
n
154
LEU
154
A
LEU
155
n
155
LEU
155
A
LYS
156
n
156
LYS
156
A
LYS
157
n
157
LYS
157
A
LYS
158
n
158
LYS
158
A
ASP
159
n
159
ASP
159
A
LEU
160
n
160
LEU
160
A
LYS
161
n
161
LYS
161
A
ASP
162
n
162
ASP
162
A
ARG
163
n
163
ARG
163
A
LEU
164
n
164
LEU
164
A
LEU
165
n
165
LEU
165
A
PRO
166
n
166
PRO
166
A
ALA
167
n
167
ALA
167
A
GLY
168
n
168
GLY
168
A
ASN
169
n
169
ASN
169
A
LEU
170
n
170
LEU
170
A
ARG
171
n
171
ARG
171
A
GLU
172
n
172
GLU
172
A
PRO
173
n
173
PRO
173
A
LEU
174
n
174
LEU
174
A
LYS
175
n
175
LYS
175
A
GLU
176
n
176
GLU
176
A
ILE
177
n
177
ILE
177
A
ARG
178
n
178
ARG
178
A
ARG
179
n
179
ARG
179
A
ALA
180
n
180
ALA
180
A
ASP
181
n
181
ASP
181
A
ALA
182
n
182
ALA
182
A
LEU
183
n
183
LEU
183
A
VAL
184
n
184
VAL
184
A
LEU
185
n
185
LEU
185
A
THR
186
n
186
THR
186
A
TYR
187
n
187
TYR
187
A
GLN
188
n
188
GLN
188
A
GLU
189
n
189
GLU
189
A
VAL
190
n
190
VAL
190
A
GLU
191
n
191
GLU
191
A
PRO
192
n
192
PRO
192
A
PHE
193
n
193
PHE
193
A
GLU
194
n
194
GLU
194
A
PHE
195
n
195
PHE
195
A
PHE
196
n
196
PHE
196
A
THR
197
n
197
THR
197
A
GLY
198
n
198
GLY
198
A
LYS
199
n
199
LYS
199
A
PRO
200
n
200
PRO
200
A
THR
201
n
201
THR
201
A
PHE
202
n
202
PHE
202
A
LYS
203
n
203
LYS
203
A
MET
204
n
204
MET
204
A
PHE
205
n
205
PHE
205
A
ARG
206
n
206
ARG
206
A
GLU
207
n
207
GLU
207
A
PHE
208
n
208
PHE
208
A
CYS
209
n
209
CYS
209
A
CYS
210
n
210
CYS
210
A
LEU
211
n
211
LEU
211
A
LEU
212
n
212
LEU
212
A
ASN
213
n
213
ASN
213
A
SER
214
n
214
SER
214
A
ASP
215
n
215
ASP
215
A
PHE
216
n
216
PHE
216
A
GLU
217
n
217
GLU
217
A
GLU
218
n
218
GLU
218
A
VAL
219
n
219
VAL
219
A
PRO
220
n
220
PRO
220
A
PHE
221
n
221
PHE
221
A
ASP
222
n
222
ASP
222
A
ILE
223
n
223
ILE
223
A
LEU
224
n
224
LEU
224
A
LYS
225
n
225
LYS
225
A
GLU
226
n
226
GLU
226
A
ARG
227
n
227
ARG
227
A
GLU
228
n
228
GLU
228
A
VAL
229
n
229
VAL
229
A
ILE
230
n
230
ILE
230
A
ALA
231
n
231
ALA
231
A
PHE
232
n
232
PHE
232
A
SER
233
n
233
SER
233
A
GLY
234
n
234
GLY
234
A
LEU
235
n
235
LEU
235
A
GLY
236
n
236
GLY
236
A
ASP
237
n
237
ASP
237
A
ASN
238
n
238
ASN
238
A
GLY
239
n
239
GLY
239
A
GLN
240
n
240
GLN
240
A
PHE
241
n
241
PHE
241
A
ARG
242
n
242
ARG
242
A
LYS
243
n
243
LYS
243
A
VAL
244
n
244
VAL
244
A
LEU
245
n
245
LEU
245
A
LYS
246
n
246
LYS
246
A
ASN
247
n
247
ASN
247
A
LEU
248
n
248
LEU
248
A
GLY
249
n
249
GLY
249
A
ILE
250
n
250
ILE
250
A
LYS
251
n
251
LYS
251
A
VAL
252
n
252
VAL
252
A
LYS
253
n
253
LYS
253
A
GLU
254
n
254
GLU
254
A
PHE
255
n
255
PHE
255
A
MET
256
n
256
MET
256
A
SER
257
n
257
SER
257
A
PHE
258
n
258
PHE
258
A
PRO
259
n
259
PRO
259
A
ASP
260
n
260
ASP
260
A
HIS
261
n
261
HIS
261
A
TYR
262
n
262
TYR
262
A
ASP
263
n
263
ASP
263
A
TYR
264
n
264
TYR
264
A
SER
265
n
265
SER
265
A
ASP
266
n
266
ASP
266
A
PHE
267
n
267
PHE
267
A
THR
268
n
268
THR
268
A
PRO
269
n
269
PRO
269
A
GLU
270
n
270
GLU
270
A
GLU
271
n
271
GLU
271
A
GLY
272
n
272
GLY
272
A
GLU
273
n
273
GLU
273
A
ILE
274
n
274
ILE
274
A
TYR
275
n
275
TYR
275
A
LEU
276
n
276
LEU
276
A
THR
277
n
277
THR
277
A
THR
278
n
278
THR
278
A
PRO
279
n
279
PRO
279
A
LYS
280
n
280
LYS
280
A
ASP
281
n
281
ASP
281
A
LEU
282
n
282
LEU
282
A
ILE
283
n
283
ILE
283
A
LYS
284
n
284
LYS
284
A
LEU
285
n
285
LEU
285
A
GLN
286
n
286
GLN
286
A
GLY
287
n
287
GLY
287
A
TYR
288
n
288
TYR
288
A
GLU
289
n
289
GLU
289
A
ASN
290
n
290
ASN
290
A
VAL
291
n
291
VAL
291
A
PHE
292
n
292
PHE
292
A
ALA
293
n
293
ALA
293
A
LEU
294
n
294
LEU
294
A
ASN
295
n
295
ASN
295
A
PHE
296
n
296
PHE
296
A
LYS
297
n
297
LYS
297
A
VAL
298
n
298
VAL
298
A
LYS
299
n
299
LYS
299
A
LEU
300
n
300
LEU
300
A
GLU
301
n
301
GLU
301
A
ARG
302
n
302
ARG
302
A
GLU
303
n
303
GLU
303
A
GLU
304
n
304
GLU
304
A
LYS
305
n
305
LYS
305
A
LEU
306
n
306
LEU
306
A
LYS
307
n
307
LYS
307
A
LYS
308
n
308
LYS
308
A
LEU
309
n
309
LEU
309
A
ILE
310
n
310
ILE
310
A
TYR
311
n
311
TYR
311
A
ARG
312
n
312
ARG
312
A
ILE
313
n
313
ILE
313
A
PHE
314
n
314
PHE
314
A
TYR
315
n
315
TYR
315
A
0.0589
0.0798
-0.0151
0.6737
0.7688
1.0436
0.0445
-0.0071
-0.1004
0.0962
-0.0181
-0.0463
0.3362
0.0983
0.0059
0.3085
0.0276
0.0084
0.1726
-0.0233
0.1992
refined
-2.4943
-2.4723
-22.8099
X-RAY DIFFRACTION
0.5308
-0.2989
-0.1015
0.8533
-0.9672
1.4549
-0.0341
-0.2755
-0.2748
0.0838
0.0237
0.2378
0.0337
-0.1884
0.0232
0.1965
-0.0458
0.0402
0.1744
-0.0196
0.2733
refined
-10.1440
10.0645
-7.9411
X-RAY DIFFRACTION
0.6526
0.0192
0.2665
1.4574
0.1394
2.5682
0.0712
-0.0525
-0.0859
0.1241
0.0123
0.0471
0.0562
0.1275
0.0082
0.1472
-0.0139
0.0169
0.1485
-0.0182
0.1898
refined
-4.8825
6.3908
-9.3976
X-RAY DIFFRACTION
1.8875
0.3294
-0.7906
0.6704
-0.7296
2.7463
-0.2364
-0.2857
-0.4265
-0.0224
-0.1124
-0.1854
0.2275
0.1242
-0.3154
0.2359
-0.0232
0.0668
0.2210
0.0436
0.2612
refined
-5.7133
1.1359
7.7469
X-RAY DIFFRACTION
A
1
A
50
X-RAY DIFFRACTION
1
chain 'A' and (resseq 1:50)
A
51
A
80
X-RAY DIFFRACTION
2
chain 'A' and (resseq 51:80)
A
81
A
220
X-RAY DIFFRACTION
3
chain 'A' and (resseq 81:220)
A
221
A
315
X-RAY DIFFRACTION
4
chain 'A' and (resseq 221:315)
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
89
A
O
ASN
89
A
N
GLU
86
A
N
GLU
86
A
N
LEU
82
A
N
LEU
82
A
O
ALA
115
A
O
ALA
115
A
O
SER
112
A
O
SER
112
A
N
ILE
69
A
N
ILE
69
A
N
LEU
70
A
N
LEU
70
A
O
ILE
136
A
O
ILE
136
A
O
LEU
137
A
O
LEU
137
A
N
ILE
39
A
N
ILE
39
A
N
GLY
42
A
N
GLY
42
A
O
LEU
154
A
O
LEU
154
A
N
LEU
155
A
N
LEU
155
A
O
VAL
184
A
O
VAL
184
A
N
LEU
185
A
N
LEU
185
A
O
MET
204
A
O
MET
204
A
N
LEU
211
A
N
LEU
211
A
O
VAL
219
A
O
VAL
219
A
O
ASN
89
A
O
ASN
89
A
N
GLU
86
A
N
GLU
86
A
N
LEU
82
A
N
LEU
82
A
O
ALA
115
A
O
ALA
115
A
O
SER
112
A
O
SER
112
A
N
ILE
69
A
N
ILE
69
A
N
LEU
70
A
N
LEU
70
A
O
ILE
136
A
O
ILE
136
A
O
LEU
137
A
O
LEU
137
A
N
ILE
39
A
N
ILE
39
A
N
GLY
42
A
N
GLY
42
A
O
LEU
154
A
O
LEU
154
A
N
LEU
155
A
N
LEU
155
A
O
VAL
184
A
O
VAL
184
A
N
LEU
185
A
N
LEU
185
A
O
MET
204
A
O
MET
204
A
N
CYS
209
A
N
CYS
209
A
O
ASN
295
A
O
ASN
295
A
O
PHE
292
A
O
PHE
292
A
N
TYR
275
A
N
TYR
275
A
O
LEU
276
A
O
LEU
276
A
N
PHE
232
A
N
PHE
232
A
N
ALA
231
A
N
ALA
231
A
O
GLU
254
A
O
GLU
254
1
A
LEU
2
-152.87
-51.50
1
A
SER
131
31.64
56.19
1
A
CYS
210
-174.81
-167.26
1
A
LEU
235
-178.14
-153.37
204.240
44.4362
13.620
3.7361
0.0000
-0.0000
1.3072
0.0000
-5.0433
0.1995
0.1723
0.1737
1.9000
23.0210
1731
36493
34603
5.0000
94.8000
1.000
0.500
0.1900
RANDOM
1
0.110
MOLECULAR REPLACEMENT
18.2600
0.8300
1.1000
PDB ENTRY 4EHW
ML
FLAT BULK SOLVENT MODEL
52.7070
0.3510
1.9000
23.0210
208
2869
79
0
2582
0.007
2711
1.020
3632
0.070
390
0.005
448
12.355
1054
0.2459
0.2210
1.9554
125
2365
2490
12
83.0000
0.2298
0.1916
2.0185
135
2565
2700
12
90.0000
0.2167
0.1812
2.0906
137
2598
2735
12
92.0000
0.2144
0.1684
2.1742
142
2709
2851
12
95.0000
0.2125
0.1697
2.2731
141
2696
2837
12
94.0000
0.2083
0.1737
2.3928
145
2735
2880
12
96.0000
0.2289
0.1796
2.5425
145
2760
2905
12
97.0000
0.2431
0.1897
2.7385
146
2787
2933
12
97.0000
0.2078
0.1822
3.0136
149
2828
2977
12
98.0000
0.2083
0.1578
3.4484
152
2885
3037
12
99.0000
0.1577
0.1491
4.3399
153
2895
3048
12
99.0000
0.1890
0.1814
23.0229
161
3049
3210
12
99.0000
1.900
50.000
4EHX
36583
36493
2.0
2.0
0.059
1.048
1
9.400
5.600
99.800
0.563
1.900
1.930
1766
0.872
1
4.700
97.500
0.479
1.930
1.970
1793
0.856
1
5.300
99.900
0.433
1.970
2.010
1796
0.864
1
5.600
100.000
0.383
2.010
2.050
1797
0.883
1
5.700
100.000
0.315
2.050
2.090
1784
0.882
1
5.700
100.000
0.250
2.090
2.140
1819
0.893
1
5.800
100.000
0.208
2.140
2.190
1808
0.859
1
5.700
99.900
0.174
2.190
2.250
1798
0.866
1
5.800
100.000
0.149
2.250
2.320
1821
0.866
1
5.800
100.000
0.135
2.320
2.390
1804
0.872
1
5.800
100.000
0.116
2.390
2.480
1829
0.908
1
5.800
100.000
0.106
2.480
2.580
1802
0.975
1
5.800
100.000
0.096
2.580
2.700
1816
1.050
1
5.800
100.000
0.087
2.700
2.840
1820
1.179
1
5.800
100.000
0.080
2.840
3.020
1839
1.545
1
5.700
100.000
0.073
3.020
3.250
1837
1.788
1
5.700
100.000
0.054
3.250
3.580
1829
1.547
1
5.700
100.000
0.038
3.580
4.090
1886
1.192
1
5.700
100.000
0.029
4.090
5.160
1881
1.048
1
5.600
100.000
0.026
5.160
50.000
1968
0.934
1
5.300
98.300
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Tue Jan 25 16:23:50 2011 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.3.0
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7_650
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
SERGUI
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of LpxK from Aquifex aeolicus at 1.9 angstrom resolution
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
5
N
N
A
LEU
2
A
LEU
2
HELX_P
A
SER
5
A
SER
5
5
1
4
A
LEU
6
A
LEU
6
HELX_P
A
LYS
26
A
LYS
26
1
2
21
A
GLY
50
A
GLY
50
HELX_P
A
LEU
62
A
LEU
62
1
3
13
A
SER
93
A
SER
93
HELX_P
A
GLY
98
A
GLY
98
1
4
6
A
GLY
98
A
GLY
98
HELX_P
A
LEU
108
A
LEU
108
1
5
11
A
ASP
118
A
ASP
118
HELX_P
A
SER
131
A
SER
131
1
6
14
A
LYS
157
A
LYS
157
HELX_P
A
LYS
161
A
LYS
161
1
7
5
A
PRO
173
A
PRO
173
HELX_P
A
ALA
180
A
ALA
180
5
8
8
A
PRO
220
A
PRO
220
HELX_P
A
LYS
225
A
LYS
225
5
9
6
A
GLY
236
A
GLY
236
HELX_P
A
GLY
249
A
GLY
249
1
10
14
A
THR
278
A
THR
278
HELX_P
A
ILE
283
A
ILE
283
1
11
6
A
ARG
302
A
ARG
302
HELX_P
A
ILE
313
A
ILE
313
1
12
12
TRANSFERASE
membrane protein, kinase, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase, disaccharide-1-phosphate 4'-kinase, membrane, TRANSFERASE, lipid metabolism, tetraacyldisaccharide 4'-kinase
A
LEU
165
A
LEU
165
1
A
PRO
166
A
PRO
166
-2.05
LPXK_AQUAE
UNP
1
1
O67572
MLRSSLLPFSYLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKG
TLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGLLALEKLSPEVFILDDGFQHRKLHRDLNILLLKKKDL
KDRLLPAGNLREPLKEIRRADALVLTYQEVEPFEFFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFSGLGDNGQ
FRKVLKNLGIKVKEFMSFPDHYDYSDFTPEEGEIYLTTPKDLIKLQGYENVFALNFKVKLEREEKLKKLIYRIFY
1
315
4EHX
1
315
O67572
A
1
1
315
10
13
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
A
ASN
89
A
ASN
89
A
LEU
90
A
LEU
90
A
THR
81
A
THR
81
A
GLU
86
A
GLU
86
A
SER
112
A
SER
112
A
SER
116
A
SER
116
A
VAL
67
A
VAL
67
A
SER
71
A
SER
71
A
VAL
134
A
VAL
134
A
ASP
138
A
ASP
138
A
VAL
38
A
VAL
38
A
ASN
43
A
ASN
43
A
LEU
150
A
LEU
150
A
LYS
156
A
LYS
156
A
ALA
182
A
ALA
182
A
THR
186
A
THR
186
A
THR
201
A
THR
201
A
LEU
212
A
LEU
212
A
GLU
218
A
GLU
218
A
VAL
219
A
VAL
219
A
ASN
89
A
ASN
89
A
LEU
90
A
LEU
90
A
THR
81
A
THR
81
A
GLU
86
A
GLU
86
A
SER
112
A
SER
112
A
SER
116
A
SER
116
A
VAL
67
A
VAL
67
A
SER
71
A
SER
71
A
VAL
134
A
VAL
134
A
ASP
138
A
ASP
138
A
VAL
38
A
VAL
38
A
ASN
43
A
ASN
43
A
LEU
150
A
LEU
150
A
LYS
156
A
LYS
156
A
ALA
182
A
ALA
182
A
THR
186
A
THR
186
A
THR
201
A
THR
201
A
LEU
212
A
LEU
212
A
VAL
291
A
VAL
291
A
LEU
300
A
LEU
300
A
TYR
275
A
TYR
275
A
THR
277
A
THR
277
A
VAL
229
A
VAL
229
A
SER
233
A
SER
233
A
VAL
252
A
VAL
252
A
SER
257
A
SER
257
BINDING SITE FOR RESIDUE EPE A 401
A
EPE
401
Software
10
BINDING SITE FOR RESIDUE GOL A 402
A
GOL
402
Software
3
BINDING SITE FOR RESIDUE GOL A 403
A
GOL
403
Software
2
BINDING SITE FOR RESIDUE MPD A 404
A
MPD
404
Software
4
BINDING SITE FOR RESIDUE GOL A 405
A
GOL
405
Software
5
BINDING SITE FOR RESIDUE GOL A 406
A
GOL
406
Software
3
BINDING SITE FOR RESIDUE GOL A 407
A
GOL
407
Software
2
BINDING SITE FOR RESIDUE GOL A 408
A
GOL
408
Software
3
BINDING SITE FOR RESIDUE MPD A 409
A
MPD
409
Software
4
BINDING SITE FOR RESIDUE GOL A 410
A
GOL
410
Software
2
BINDING SITE FOR RESIDUE GOL A 411
A
GOL
411
Software
4
A
ILE
17
A
ILE
17
10
1_555
A
ARG
20
A
ARG
20
10
1_555
A
ARG
72
A
ARG
72
10
1_555
A
ARG
119
A
ARG
119
10
1_555
A
GLN
142
A
GLN
142
10
1_555
A
HIS
143
A
HIS
143
10
1_555
A
HOH
501
M
HOH
10
1_555
A
HOH
637
M
HOH
10
1_555
A
HOH
639
M
HOH
10
1_555
A
HOH
655
M
HOH
10
1_555
A
THR
52
A
THR
52
3
1_555
A
SER
53
A
SER
53
3
1_555
A
ASN
295
A
ASN
295
3
1_555
A
GLU
189
A
GLU
189
2
1_555
A
ARG
206
A
ARG
206
2
1_555
A
GLY
48
A
GLY
48
4
1_555
A
LYS
156
A
LYS
156
4
1_555
A
GLU
191
A
GLU
191
4
1_555
A
HOH
530
M
HOH
4
1_555
A
LYS
63
A
LYS
63
5
1_555
A
ASP
64
A
ASP
64
5
1_555
A
LYS
65
A
LYS
65
5
1_555
A
HIS
110
A
HIS
110
5
1_555
A
HOH
635
M
HOH
5
1_555
A
GLY
287
A
GLY
287
3
1_555
A
TYR
288
A
TYR
288
3
1_555
A
GLU
289
A
GLU
289
3
1_555
A
PHE
28
A
PHE
28
2
2_455
A
GLY
287
A
GLY
287
2
1_555
A
LEU
61
A
LEU
61
3
1_555
A
PHE
314
A
PHE
314
3
1_555
A
HOH
674
M
HOH
3
1_555
A
ASP
149
A
ASP
149
4
1_555
A
LEU
309
A
LEU
309
4
1_555
A
ARG
312
A
ARG
312
4
1_555
A
ILE
313
A
ILE
313
4
1_555
A
ILE
83
A
ILE
83
2
1_555
A
GLU
86
A
GLU
86
2
1_555
A
ARG
66
A
ARG
66
4
1_555
A
GLU
207
A
GLU
207
4
4_455
A
HOH
649
M
HOH
4
4_455
A
HOH
706
M
HOH
4
1_555
19
P 21 21 21