0.031387
0.000000
0.006128
0.000000
0.036114
0.000000
0.000000
0.000000
0.023120
0.00000
0.00000
0.00000
Krzywda, S.
Bialek, W.
Jaskolski, M.
Szczepaniak, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.0
101.1
90.0
31.86
27.69
44.07
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H13 N O4 S
195.237
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
non-polymer
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
FE
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
Y
142
N
N
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
C
Y
157
N
C
N
158
N
C
N
159
N
C
N
160
N
C
Y
161
N
N
Y
162
N
C
Y
163
N
C
Y
164
N
C
Y
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
Y
169
N
N
Y
170
N
C
Y
171
N
C
Y
172
N
C
Y
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
Y
219
N
C
Y
220
N
N
Y
221
N
C
Y
222
N
C
Y
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
S
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
N
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
S
N
316
N
O
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
C
N
338
N
S
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
R
C
N
411
N
O
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
N
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
N
461
N
O
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
N
479
N
C
N
480
N
C
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
sing
Y
166
N
doub
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
E
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
Y
182
N
sing
N
183
N
sing
Y
184
N
sing
N
185
E
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
sing
Y
196
N
doub
Y
197
N
sing
N
198
N
sing
Y
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
doub
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
Y
454
N
doub
Y
455
N
sing
Y
456
N
sing
N
457
N
sing
Y
458
N
doub
N
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
To be Published
0353
Cytochrome c6 and c6C from Synechococcus sp. PCC 7002 - structure and function.
UK
Febs J.
1742-464X
276
4426
4436
10.1111/j.1742-4658.2009.07150.x
19678839
Atomic-resolution structure of reduced cyanobacterial cytochrome c6 with an unusual sequence insertion.
2009
US
Biochemistry
BICHAW
0033
0006-2960
47
5515
5522
10.1021/bi701973g
18439023
Deeply branching c6-like cytochromes of cyanobacteria.
2008
10.2210/pdb4eic/pdb
pdb_00004eic
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2006-12-14
MAR CCD 165 mm
Ge
SINGLE WAVELENGTH
M
x-ray
1
0.8166
1.0
X11
EMBL/DESY, HAMBURG
0.8166
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
9446.432
Cytochrome c6
UNP Residues 25-117
1
man
polymer
618.503
HEME C
1
syn
non-polymer
195.237
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
1
syn
non-polymer
18.015
water
120
nat
water
Cytochrome c-553, Cytochrome c553, Soluble cytochrome f
no
no
ADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNGQGAMPAFGGRLSDADIANV
AAYIADQAENNKW
ADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNGQGAMPAFGGRLSDADIANV
AAYIADQAENNKW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 27264 / PCC 7002 / PR-6
sample
co-expression with pEC86
petJ, petJ1, SYNPCC7002_A0167
32049
Synechococcus sp.
668369
Escherichia coli
DH5a
plasmid
pUCJ1
1
2.02
39.09
VAPOR DIFFUSION, HANGING DROP
6.5
2.2M Ammonium sulphate, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
292
atom_site
atom_site_anisotrop
chem_comp
diffrn_source
entity
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
1
0
2013-04-10
2
0
2021-03-10
2
1
2023-09-13
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.pdbx_auth_atom_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.name
_chem_comp.pdbx_synonyms
_diffrn_source.pdbx_synchrotron_site
_entity.formula_weight
_entity.pdbx_description
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn_type.id
_struct_site.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
The same protein at 1.23 A resolution
RCSB
Y
RCSB
2012-04-05
REL
REL
HEC
HEME C
MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
HOH
water
3DR0
PDB ENTRY 3DR0
PDB
experimental model
HEM
94
2
HEC
HEC
101
A
MES
1
3
MES
MES
102
A
HOH
2
4
HOH
HOH
201
A
HOH
3
4
HOH
HOH
202
A
HOH
4
4
HOH
HOH
203
A
HOH
5
4
HOH
HOH
204
A
HOH
6
4
HOH
HOH
205
A
HOH
7
4
HOH
HOH
206
A
HOH
8
4
HOH
HOH
207
A
HOH
9
4
HOH
HOH
208
A
HOH
10
4
HOH
HOH
209
A
HOH
11
4
HOH
HOH
210
A
HOH
12
4
HOH
HOH
211
A
HOH
13
4
HOH
HOH
212
A
HOH
14
4
HOH
HOH
213
A
HOH
15
4
HOH
HOH
214
A
HOH
16
4
HOH
HOH
215
A
HOH
17
4
HOH
HOH
216
A
HOH
18
4
HOH
HOH
217
A
HOH
19
4
HOH
HOH
218
A
HOH
20
4
HOH
HOH
219
A
HOH
21
4
HOH
HOH
220
A
HOH
22
4
HOH
HOH
221
A
HOH
23
4
HOH
HOH
222
A
HOH
24
4
HOH
HOH
223
A
HOH
25
4
HOH
HOH
224
A
HOH
26
4
HOH
HOH
225
A
HOH
27
4
HOH
HOH
226
A
HOH
28
4
HOH
HOH
227
A
HOH
29
4
HOH
HOH
228
A
HOH
30
4
HOH
HOH
229
A
HOH
31
4
HOH
HOH
230
A
HOH
32
4
HOH
HOH
231
A
HOH
33
4
HOH
HOH
232
A
HOH
34
4
HOH
HOH
233
A
HOH
35
4
HOH
HOH
234
A
HOH
36
4
HOH
HOH
235
A
HOH
37
4
HOH
HOH
236
A
HOH
38
4
HOH
HOH
237
A
HOH
39
4
HOH
HOH
238
A
HOH
40
4
HOH
HOH
239
A
HOH
41
4
HOH
HOH
240
A
HOH
42
4
HOH
HOH
241
A
HOH
43
4
HOH
HOH
242
A
HOH
44
4
HOH
HOH
243
A
HOH
45
4
HOH
HOH
244
A
HOH
46
4
HOH
HOH
245
A
HOH
47
4
HOH
HOH
246
A
HOH
48
4
HOH
HOH
247
A
HOH
49
4
HOH
HOH
248
A
HOH
50
4
HOH
HOH
249
A
HOH
51
4
HOH
HOH
250
A
HOH
52
4
HOH
HOH
251
A
HOH
53
4
HOH
HOH
252
A
HOH
54
4
HOH
HOH
253
A
HOH
55
4
HOH
HOH
254
A
HOH
56
4
HOH
HOH
255
A
HOH
57
4
HOH
HOH
256
A
HOH
58
4
HOH
HOH
257
A
HOH
59
4
HOH
HOH
258
A
HOH
60
4
HOH
HOH
259
A
HOH
61
4
HOH
HOH
260
A
HOH
62
4
HOH
HOH
261
A
HOH
63
4
HOH
HOH
262
A
HOH
64
4
HOH
HOH
263
A
HOH
65
4
HOH
HOH
264
A
HOH
66
4
HOH
HOH
265
A
HOH
67
4
HOH
HOH
266
A
HOH
68
4
HOH
HOH
267
A
HOH
69
4
HOH
HOH
268
A
HOH
70
4
HOH
HOH
269
A
HOH
71
4
HOH
HOH
270
A
HOH
72
4
HOH
HOH
271
A
HOH
73
4
HOH
HOH
272
A
HOH
74
4
HOH
HOH
273
A
HOH
75
4
HOH
HOH
274
A
HOH
76
4
HOH
HOH
275
A
HOH
77
4
HOH
HOH
276
A
HOH
78
4
HOH
HOH
277
A
HOH
79
4
HOH
HOH
278
A
HOH
80
4
HOH
HOH
279
A
HOH
81
4
HOH
HOH
280
A
HOH
82
4
HOH
HOH
281
A
HOH
83
4
HOH
HOH
282
A
HOH
84
4
HOH
HOH
283
A
HOH
85
4
HOH
HOH
284
A
HOH
86
4
HOH
HOH
285
A
HOH
87
4
HOH
HOH
286
A
HOH
88
4
HOH
HOH
287
A
HOH
89
4
HOH
HOH
288
A
HOH
90
4
HOH
HOH
289
A
HOH
91
4
HOH
HOH
290
A
HOH
92
4
HOH
HOH
291
A
HOH
93
4
HOH
HOH
292
A
HOH
94
4
HOH
HOH
293
A
HOH
95
4
HOH
HOH
294
A
HOH
96
4
HOH
HOH
295
A
HOH
97
4
HOH
HOH
296
A
HOH
98
4
HOH
HOH
297
A
HOH
99
4
HOH
HOH
298
A
HOH
100
4
HOH
HOH
299
A
HOH
101
4
HOH
HOH
300
A
HOH
102
4
HOH
HOH
301
A
HOH
103
4
HOH
HOH
302
A
HOH
104
4
HOH
HOH
303
A
HOH
105
4
HOH
HOH
304
A
HOH
106
4
HOH
HOH
305
A
HOH
107
4
HOH
HOH
306
A
HOH
108
4
HOH
HOH
307
A
HOH
109
4
HOH
HOH
308
A
HOH
110
4
HOH
HOH
309
A
HOH
111
4
HOH
HOH
310
A
HOH
112
4
HOH
HOH
311
A
HOH
113
4
HOH
HOH
312
A
HOH
114
4
HOH
HOH
313
A
HOH
115
4
HOH
HOH
314
A
HOH
116
4
HOH
HOH
315
A
HOH
117
4
HOH
HOH
316
A
HOH
118
4
HOH
HOH
317
A
HOH
119
4
HOH
HOH
318
A
HOH
120
4
HOH
HOH
319
A
HOH
121
4
HOH
HOH
320
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
ALA
3
n
3
ALA
3
A
ALA
4
n
4
ALA
4
A
ALA
5
n
5
ALA
5
A
GLY
6
n
6
GLY
6
A
ALA
7
n
7
ALA
7
A
GLN
8
n
8
GLN
8
A
VAL
9
n
9
VAL
9
A
PHE
10
n
10
PHE
10
A
ALA
11
n
11
ALA
11
A
ALA
12
n
12
ALA
12
A
ASN
13
n
13
ASN
13
A
CYS
14
n
14
CYS
14
A
ALA
15
n
15
ALA
15
A
ALA
16
n
16
ALA
16
A
CYS
17
n
17
CYS
17
A
HIS
18
n
18
HIS
18
A
ALA
19
n
19
ALA
19
A
GLY
20
n
20
GLY
20
A
GLY
21
n
21
GLY
21
A
ASN
22
n
22
ASN
22
A
ASN
23
n
23
ASN
23
A
ALA
24
n
24
ALA
24
A
VAL
25
n
25
VAL
25
A
MET
26
n
26
MET
26
A
PRO
27
n
27
PRO
27
A
THR
28
n
28
THR
28
A
LYS
29
n
29
LYS
29
A
THR
30
n
30
THR
30
A
LEU
31
n
31
LEU
31
A
LYS
32
n
32
LYS
32
A
ALA
33
n
33
ALA
33
A
ASP
34
n
34
ASP
34
A
ALA
35
n
35
ALA
35
A
LEU
36
n
36
LEU
36
A
LYS
37
n
37
LYS
37
A
THR
38
n
38
THR
38
A
TYR
39
n
39
TYR
39
A
LEU
40
n
40
LEU
40
A
ALA
41
n
41
ALA
41
A
GLY
42
n
42
GLY
42
A
TYR
43
n
43
TYR
43
A
LYS
44
n
44
LYS
44
A
ASP
45
n
45
ASP
45
A
GLY
46
n
46
GLY
46
A
SER
47
n
47
SER
47
A
LYS
48
n
48
LYS
48
A
SER
49
n
49
SER
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
GLU
52
n
52
GLU
52
A
ALA
53
n
53
ALA
53
A
VAL
54
n
54
VAL
54
A
ALA
55
n
55
ALA
55
A
TYR
56
n
56
TYR
56
A
GLN
57
n
57
GLN
57
A
VAL
58
n
58
VAL
58
A
THR
59
n
59
THR
59
A
ASN
60
n
60
ASN
60
A
GLY
61
n
61
GLY
61
A
GLN
62
n
62
GLN
62
A
GLY
63
n
63
GLY
63
A
ALA
64
n
64
ALA
64
A
MET
65
n
65
MET
65
A
PRO
66
n
66
PRO
66
A
ALA
67
n
67
ALA
67
A
PHE
68
n
68
PHE
68
A
GLY
69
n
69
GLY
69
A
GLY
70
n
70
GLY
70
A
ARG
71
n
71
ARG
71
A
LEU
72
n
72
LEU
72
A
SER
73
n
73
SER
73
A
ASP
74
n
74
ASP
74
A
ALA
75
n
75
ALA
75
A
ASP
76
n
76
ASP
76
A
ILE
77
n
77
ILE
77
A
ALA
78
n
78
ALA
78
A
ASN
79
n
79
ASN
79
A
VAL
80
n
80
VAL
80
A
ALA
81
n
81
ALA
81
A
ALA
82
n
82
ALA
82
A
TYR
83
n
83
TYR
83
A
ILE
84
n
84
ILE
84
A
ALA
85
n
85
ALA
85
A
ASP
86
n
86
ASP
86
A
GLN
87
n
87
GLN
87
A
ALA
88
n
88
ALA
88
A
GLU
89
n
89
GLU
89
A
ASN
90
n
90
ASN
90
A
ASN
91
n
91
ASN
91
A
LYS
92
n
92
LYS
92
A
TRP
93
n
93
TRP
93
A
0.0954
0.1058
0.0952
0.1056
0.1177
0.1271
823
974
1.5
1.5
54437
author_and_software_defined_assembly
PISA
1
monomeric
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NA
HEC
1_555
91.1
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NB
HEC
1_555
90.0
A
HEC
101
B
NA
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NB
HEC
1_555
90.2
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NC
HEC
1_555
88.7
A
HEC
101
B
NA
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NC
HEC
1_555
179.6
A
HEC
101
B
NB
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
NC
HEC
1_555
90.1
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
ND
HEC
1_555
90.6
A
HEC
101
B
NA
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
ND
HEC
1_555
89.9
A
HEC
101
B
NB
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
ND
HEC
1_555
179.3
A
HEC
101
B
NC
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
HEC
101
B
ND
HEC
1_555
89.7
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
65
A
SD
MET
65
1_555
175.4
A
HEC
101
B
NA
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
65
A
SD
MET
65
1_555
84.6
A
HEC
101
B
NB
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
65
A
SD
MET
65
1_555
91.6
A
HEC
101
B
NC
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
65
A
SD
MET
65
1_555
95.6
A
HEC
101
B
ND
HEC
1_555
A
HEC
101
B
FE
HEC
1_555
A
MET
65
A
SD
MET
65
1_555
87.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
ANISOTROPIC REFINEMENT, HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.1271
0.1056
0.1058
0.1058
0.84
32.55
7849
974
64908
64908
7790
1.5
94.8
RANDOM
1
FREE R
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 3DR0
Engh & Huber
12
664.26
800.71
0.84
32.55
120
837
55
0
662
0.026
0.057
0.000
0.0039
0.115
0.000
0.093
0.005
0.025
0.080
9.45
0.84
32.55
4EIC
64908
64908
0.0
-3.000
0.063
1
15.21
6.0
94.8
0.507
0.84
0.86
3.23
4069
1
4.3
80.6
data collection
AUTOMAR
phasing
MOLREP
refinement
SHELXL-97
data reduction
XDS
data scaling
XDS
Crystal structure of reduced cytochrome c6 from Synechococcus sp. PCC 7002 at ultra-high resolution
1
N
N
2
N
N
3
N
N
4
N
N
A
ASP
2
A
ASP
2
HELX_P
A
CYS
14
A
CYS
14
1
1
13
A
CYS
14
A
CYS
14
HELX_P
A
ALA
19
A
ALA
19
1
2
6
A
GLY
20
A
GLY
20
HELX_P
A
ASN
22
A
ASN
22
5
3
3
A
LYS
32
A
LYS
32
HELX_P
A
LEU
40
A
LEU
40
1
4
9
A
SER
49
A
SER
49
HELX_P
A
GLY
61
A
GLY
61
1
5
13
A
SER
73
A
SER
73
HELX_P
A
ASN
90
A
ASN
90
1
6
18
covale
1.832
none
A
CYS
14
A
SG
CYS
14
1_555
A
HEC
101
B
CAB
HEC
1_555
covale
1.836
none
A
CYS
17
A
SG
CYS
17
1_555
A
HEC
101
B
CAC
HEC
1_555
metalc
1.976
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
101
B
FE
HEC
1_555
metalc
2.339
A
MET
65
A
SD
MET
65
1_555
A
HEC
101
B
FE
HEC
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, Cytochrome C6
CYC6_SYNP2
UNP
1
25
O30881
ADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNGQGAMPAFGGRLSDADIANV
AAYIADQAENNKW
25
117
4EIC
1
93
O30881
A
1
1
93
BINDING SITE FOR RESIDUE HEC A 101
A
HEC
101
Software
20
BINDING SITE FOR RESIDUE MES A 102
A
MES
102
Software
1
A
ASN
13
A
ASN
13
20
1_555
A
CYS
14
A
CYS
14
20
1_555
A
CYS
17
A
CYS
17
20
1_555
A
HIS
18
A
HIS
18
20
1_555
A
ASN
23
A
ASN
23
20
1_555
A
VAL
25
A
VAL
25
20
1_555
A
MET
26
A
MET
26
20
1_555
A
LYS
29
A
LYS
29
20
1_555
A
THR
30
A
THR
30
20
1_555
A
LEU
31
A
LEU
31
20
1_555
A
ALA
35
A
ALA
35
20
1_555
A
TYR
39
A
TYR
39
20
1_555
A
LEU
40
A
LEU
40
20
1_555
A
GLN
57
A
GLN
57
20
1_555
A
VAL
58
A
VAL
58
20
1_555
A
GLN
62
A
GLN
62
20
1_555
A
MET
65
A
MET
65
20
1_555
A
HOH
201
D
HOH
20
1_555
A
HOH
215
D
HOH
20
1_555
A
HOH
268
D
HOH
20
1_555
A
CYS
17
A
CYS
17
1
1_555
4
P 1 21 1