0.009293 0.000000 0.000000 0.000000 0.009293 0.000000 0.000000 0.000000 0.007291 0.000000 0.000000 0.000000 Sampathkumar, P. Almo, S.C. New York Structural Genomics Research Consortium (NYSGRC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 107.607 107.607 137.160 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer To be Published 0353 Crystal structure of a putative zinc-binding dehydrogenase from Sinorhizobium meliloti 1021 100 1 MIRRORS CCD 2011-10-07 ADSC QUANTUM 315 Si(111) SINGLE WAVELENGTH M x-ray 1 0.9791 1.0 X29A NSLS 0.9791 SYNCHROTRON NSLS BEAMLINE X29A 39017.254 Putative zinc-binding dehydrogenase 1.1.1.- 1 man polymer 62.068 1,2-ETHANEDIOL 17 syn non-polymer 65.409 ZINC ION 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 185 nat water no yes (MSE)HHHHHHSSGVDLGTENLYFQS(MSE)(MSE)KAVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLH GEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRK QAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA TATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLG SFINPFVHRRAADLVATGAIEIDR(MSE)ISRRISLDEAPDVISNPAAAGEVKVLVIPSAERVAQQ MHHHHHHSSGVDLGTENLYFQSMMKAVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTPPVTLG HEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPV HGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVV EAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVHRRAA DLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAERVAQQ A NYSGRC-012003 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Ensifer meliloti 1021 sample R01577, SMc01214 266834 Sinorhizobium meliloti 469008 Escherichia coli BL21(DE3) Plasmid pSGC 1 2.54 51.65 VAPOR DIFFUSION, SITTING DROP 6.2 Protein (20 mM Hepes, pH 7.5, 150 mM NaCl, 10% glycerol; Reservoir (MCSG1 #3: 0.2 M Sodium Chloride 0.1 M Na2HPO4:KH2PO4 10% (w/v) PEG 8000 ); Cryoprotection (30% Ethylene glycol), temperature 298K, VAPOR DIFFUSION, SITTING DROP 298 New York Structural Genomics Research Consortium NYSGRC PSI:Biology software repository Initial release Refinement description 1 0 2012-05-02 1 1 2017-11-15 _software.classification _software.name Y RCSB Y RCSB 2012-04-06 REL REL EDO 1,2-ETHANEDIOL ZN ZINC ION CL CHLORIDE ION HOH water EDO 1 2 EDO EDO 401 A EDO 2 2 EDO EDO 402 A EDO 3 2 EDO EDO 403 A EDO 4 2 EDO EDO 404 A EDO 5 2 EDO EDO 405 A EDO 6 2 EDO EDO 406 A EDO 7 2 EDO EDO 407 A EDO 8 2 EDO EDO 408 A EDO 9 2 EDO EDO 409 A EDO 10 2 EDO EDO 410 A EDO 11 2 EDO EDO 411 A EDO 12 2 EDO EDO 412 A EDO 13 2 EDO EDO 413 A EDO 14 2 EDO EDO 414 A EDO 15 2 EDO EDO 415 A EDO 16 2 EDO EDO 416 A EDO 17 2 EDO EDO 417 A ZN 1 3 ZN ZN 418 A CL 1 4 CL CL 419 A HOH 1 5 HOH HOH 501 A HOH 2 5 HOH HOH 502 A HOH 3 5 HOH HOH 503 A HOH 4 5 HOH HOH 504 A HOH 5 5 HOH HOH 505 A HOH 6 5 HOH HOH 506 A HOH 7 5 HOH HOH 507 A HOH 8 5 HOH HOH 508 A HOH 9 5 HOH HOH 509 A HOH 10 5 HOH HOH 510 A HOH 11 5 HOH HOH 511 A HOH 12 5 HOH HOH 512 A HOH 13 5 HOH HOH 513 A HOH 14 5 HOH HOH 514 A HOH 15 5 HOH HOH 515 A HOH 16 5 HOH HOH 516 A HOH 17 5 HOH HOH 517 A HOH 18 5 HOH HOH 518 A HOH 19 5 HOH HOH 519 A HOH 20 5 HOH HOH 520 A HOH 21 5 HOH HOH 521 A HOH 22 5 HOH HOH 522 A HOH 23 5 HOH HOH 523 A HOH 24 5 HOH HOH 524 A HOH 25 5 HOH HOH 525 A HOH 26 5 HOH HOH 526 A HOH 27 5 HOH HOH 527 A HOH 28 5 HOH HOH 528 A HOH 29 5 HOH HOH 529 A HOH 30 5 HOH HOH 530 A HOH 31 5 HOH HOH 531 A HOH 32 5 HOH HOH 532 A HOH 33 5 HOH HOH 533 A HOH 34 5 HOH HOH 534 A HOH 35 5 HOH HOH 535 A HOH 36 5 HOH HOH 536 A HOH 37 5 HOH HOH 537 A HOH 38 5 HOH HOH 538 A HOH 39 5 HOH HOH 539 A HOH 40 5 HOH HOH 540 A HOH 41 5 HOH HOH 541 A HOH 42 5 HOH HOH 542 A HOH 43 5 HOH HOH 543 A HOH 44 5 HOH HOH 544 A HOH 45 5 HOH HOH 545 A HOH 46 5 HOH HOH 546 A HOH 47 5 HOH HOH 547 A HOH 48 5 HOH HOH 548 A HOH 49 5 HOH HOH 549 A HOH 50 5 HOH HOH 550 A HOH 51 5 HOH HOH 551 A HOH 52 5 HOH HOH 552 A HOH 53 5 HOH HOH 553 A HOH 54 5 HOH HOH 554 A HOH 55 5 HOH HOH 555 A HOH 56 5 HOH HOH 556 A HOH 57 5 HOH HOH 557 A HOH 58 5 HOH HOH 558 A HOH 59 5 HOH HOH 559 A HOH 60 5 HOH HOH 560 A HOH 61 5 HOH HOH 561 A HOH 62 5 HOH HOH 562 A HOH 63 5 HOH HOH 563 A HOH 64 5 HOH HOH 564 A HOH 65 5 HOH HOH 565 A HOH 66 5 HOH HOH 566 A HOH 67 5 HOH HOH 567 A HOH 68 5 HOH HOH 568 A HOH 69 5 HOH HOH 569 A HOH 70 5 HOH HOH 570 A HOH 71 5 HOH HOH 571 A HOH 72 5 HOH HOH 572 A HOH 73 5 HOH HOH 573 A HOH 74 5 HOH HOH 574 A HOH 75 5 HOH HOH 575 A HOH 76 5 HOH HOH 576 A HOH 77 5 HOH HOH 577 A HOH 78 5 HOH HOH 578 A HOH 79 5 HOH HOH 579 A HOH 80 5 HOH HOH 580 A HOH 81 5 HOH HOH 581 A HOH 82 5 HOH HOH 582 A HOH 83 5 HOH HOH 583 A HOH 84 5 HOH HOH 584 A HOH 85 5 HOH HOH 585 A HOH 86 5 HOH HOH 586 A HOH 87 5 HOH HOH 587 A HOH 88 5 HOH HOH 588 A HOH 89 5 HOH HOH 589 A HOH 90 5 HOH HOH 590 A HOH 91 5 HOH HOH 591 A HOH 92 5 HOH HOH 592 A HOH 93 5 HOH HOH 593 A HOH 94 5 HOH HOH 594 A HOH 95 5 HOH HOH 595 A HOH 96 5 HOH HOH 596 A HOH 97 5 HOH HOH 597 A HOH 98 5 HOH HOH 598 A HOH 99 5 HOH HOH 599 A HOH 100 5 HOH HOH 600 A HOH 101 5 HOH HOH 601 A HOH 102 5 HOH HOH 602 A HOH 103 5 HOH HOH 603 A HOH 104 5 HOH HOH 604 A HOH 105 5 HOH HOH 605 A HOH 106 5 HOH HOH 606 A HOH 107 5 HOH HOH 607 A HOH 108 5 HOH HOH 608 A HOH 109 5 HOH HOH 609 A HOH 110 5 HOH HOH 610 A HOH 111 5 HOH HOH 611 A HOH 112 5 HOH HOH 612 A HOH 113 5 HOH HOH 613 A HOH 114 5 HOH HOH 614 A HOH 115 5 HOH HOH 615 A HOH 116 5 HOH HOH 616 A HOH 117 5 HOH HOH 617 A HOH 118 5 HOH HOH 618 A HOH 119 5 HOH HOH 619 A HOH 120 5 HOH HOH 620 A HOH 121 5 HOH HOH 621 A HOH 122 5 HOH HOH 622 A HOH 123 5 HOH HOH 623 A HOH 124 5 HOH HOH 624 A HOH 125 5 HOH HOH 625 A HOH 126 5 HOH HOH 626 A HOH 127 5 HOH HOH 627 A HOH 128 5 HOH HOH 628 A HOH 129 5 HOH HOH 629 A HOH 130 5 HOH HOH 630 A HOH 131 5 HOH HOH 631 A HOH 132 5 HOH HOH 632 A HOH 133 5 HOH HOH 633 A HOH 134 5 HOH HOH 634 A HOH 135 5 HOH HOH 635 A HOH 136 5 HOH HOH 636 A HOH 137 5 HOH HOH 637 A HOH 138 5 HOH HOH 638 A HOH 139 5 HOH HOH 639 A HOH 140 5 HOH HOH 640 A HOH 141 5 HOH HOH 641 A HOH 142 5 HOH HOH 642 A HOH 143 5 HOH HOH 643 A HOH 144 5 HOH HOH 644 A HOH 145 5 HOH HOH 645 A HOH 146 5 HOH HOH 646 A HOH 147 5 HOH HOH 647 A HOH 148 5 HOH HOH 648 A HOH 149 5 HOH HOH 649 A HOH 150 5 HOH HOH 650 A HOH 151 5 HOH HOH 651 A HOH 152 5 HOH HOH 652 A HOH 153 5 HOH HOH 653 A HOH 154 5 HOH HOH 654 A HOH 155 5 HOH HOH 655 A HOH 156 5 HOH HOH 656 A HOH 157 5 HOH HOH 657 A HOH 158 5 HOH HOH 658 A HOH 159 5 HOH HOH 659 A HOH 160 5 HOH HOH 660 A HOH 161 5 HOH HOH 661 A HOH 162 5 HOH HOH 662 A HOH 163 5 HOH HOH 663 A HOH 164 5 HOH HOH 664 A HOH 165 5 HOH HOH 665 A HOH 166 5 HOH HOH 666 A HOH 167 5 HOH HOH 667 A HOH 168 5 HOH HOH 668 A HOH 169 5 HOH HOH 669 A HOH 170 5 HOH HOH 670 A HOH 171 5 HOH HOH 671 A HOH 172 5 HOH HOH 672 A HOH 173 5 HOH HOH 673 A HOH 174 5 HOH HOH 674 A HOH 175 5 HOH HOH 675 A HOH 176 5 HOH HOH 676 A HOH 177 5 HOH HOH 677 A HOH 178 5 HOH HOH 678 A HOH 179 5 HOH HOH 679 A HOH 180 5 HOH HOH 680 A HOH 181 5 HOH HOH 681 A HOH 182 5 HOH HOH 682 A HOH 183 5 HOH HOH 683 A HOH 184 5 HOH HOH 684 A HOH 185 5 HOH HOH 685 A n 1 -22 A n 2 -21 A n 3 -20 A n 4 -19 A n 5 -18 A n 6 -17 A n 7 -16 A n 8 -15 A n 9 -14 A n 10 -13 A n 11 -12 A n 12 -11 A n 13 -10 A n 14 -9 A n 15 -8 A n 16 -7 A n 17 -6 A n 18 -5 A n 19 -4 A n 20 -3 A GLN -2 n 21 GLN -2 A SER -1 n 22 SER -1 A MSE 0 n 23 MSE 0 A MSE 1 n 24 MSE 1 A LYS 2 n 25 LYS 2 A ALA 3 n 26 ALA 3 A VAL 4 n 27 VAL 4 A ARG 5 n 28 ARG 5 A LEU 6 n 29 LEU 6 A GLU 7 n 30 GLU 7 A SER 8 n 31 SER 8 A VAL 9 n 32 VAL 9 A GLY 10 n 33 GLY 10 A ASN 11 n 34 ASN 11 A ILE 12 n 35 ILE 12 A SER 13 n 36 SER 13 A VAL 14 n 37 VAL 14 A ARG 15 n 38 ARG 15 A ASN 16 n 39 ASN 16 A VAL 17 n 40 VAL 17 A GLY 18 n 41 GLY 18 A ILE 19 n 42 ILE 19 A PRO 20 n 43 PRO 20 A GLU 21 n 44 GLU 21 A PRO 22 n 45 PRO 22 A GLY 23 n 46 GLY 23 A PRO 24 n 47 PRO 24 A ASP 25 n 48 ASP 25 A ASP 26 n 49 ASP 26 A LEU 27 n 50 LEU 27 A LEU 28 n 51 LEU 28 A VAL 29 n 52 VAL 29 A LYS 30 n 53 LYS 30 A VAL 31 n 54 VAL 31 A GLU 32 n 55 GLU 32 A ALA 33 n 56 ALA 33 A CYS 34 n 57 CYS 34 A GLY 35 n 58 GLY 35 A ILE 36 n 59 ILE 36 A CYS 37 n 60 CYS 37 A GLY 38 n 61 GLY 38 A THR 39 n 62 THR 39 A ASP 40 n 63 ASP 40 A ARG 41 n 64 ARG 41 A HIS 42 n 65 HIS 42 A LEU 43 n 66 LEU 43 A LEU 44 n 67 LEU 44 A HIS 45 n 68 HIS 45 A GLY 46 n 69 GLY 46 A GLU 47 n 70 GLU 47 A PHE 48 n 71 PHE 48 A PRO 49 n 72 PRO 49 A SER 50 n 73 SER 50 A THR 51 n 74 THR 51 A PRO 52 n 75 PRO 52 A PRO 53 n 76 PRO 53 A VAL 54 n 77 VAL 54 A THR 55 n 78 THR 55 A LEU 56 n 79 LEU 56 A GLY 57 n 80 GLY 57 A HIS 58 n 81 HIS 58 A GLU 59 n 82 GLU 59 A PHE 60 n 83 PHE 60 A CYS 61 n 84 CYS 61 A GLY 62 n 85 GLY 62 A ILE 63 n 86 ILE 63 A VAL 64 n 87 VAL 64 A VAL 65 n 88 VAL 65 A GLU 66 n 89 GLU 66 A ALA 67 n 90 ALA 67 A GLY 68 n 91 GLY 68 A SER 69 n 92 SER 69 A ALA 70 n 93 ALA 70 A VAL 71 n 94 VAL 71 A ARG 72 n 95 ARG 72 A ASP 73 n 96 ASP 73 A ILE 74 n 97 ILE 74 A ALA 75 n 98 ALA 75 A PRO 76 n 99 PRO 76 A GLY 77 n 100 GLY 77 A ALA 78 n 101 ALA 78 A ARG 79 n 102 ARG 79 A ILE 80 n 103 ILE 80 A THR 81 n 104 THR 81 A GLY 82 n 105 GLY 82 A ASP 83 n 106 ASP 83 A PRO 84 n 107 PRO 84 A ASN 85 n 108 ASN 85 A ILE 86 n 109 ILE 86 A SER 87 n 110 SER 87 A CYS 88 n 111 CYS 88 A GLY 89 n 112 GLY 89 A ARG 90 n 113 ARG 90 A CYS 91 n 114 CYS 91 A PRO 92 n 115 PRO 92 A GLN 93 n 116 GLN 93 A CYS 94 n 117 CYS 94 A GLN 95 n 118 GLN 95 A ALA 96 n 119 ALA 96 A GLY 97 n 120 GLY 97 A ARG 98 n 121 ARG 98 A VAL 99 n 122 VAL 99 A ASN 100 n 123 ASN 100 A LEU 101 n 124 LEU 101 A CYS 102 n 125 CYS 102 A ARG 103 n 126 ARG 103 A ASN 104 n 127 ASN 104 A LEU 105 n 128 LEU 105 A ARG 106 n 129 ARG 106 A ALA 107 n 130 ALA 107 A ILE 108 n 131 ILE 108 A GLY 109 n 132 GLY 109 A ILE 110 n 133 ILE 110 A HIS 111 n 134 HIS 111 A ARG 112 n 135 ARG 112 A ASP 113 n 136 ASP 113 A GLY 114 n 137 GLY 114 A GLY 115 n 138 GLY 115 A PHE 116 n 139 PHE 116 A ALA 117 n 140 ALA 117 A GLU 118 n 141 GLU 118 A TYR 119 n 142 TYR 119 A VAL 120 n 143 VAL 120 A LEU 121 n 144 LEU 121 A VAL 122 n 145 VAL 122 A PRO 123 n 146 PRO 123 A ARG 124 n 147 ARG 124 A LYS 125 n 148 LYS 125 A GLN 126 n 149 GLN 126 A ALA 127 n 150 ALA 127 A PHE 128 n 151 PHE 128 A GLU 129 n 152 GLU 129 A ILE 130 n 153 ILE 130 A PRO 131 n 154 PRO 131 A LEU 132 n 155 LEU 132 A THR 133 n 156 THR 133 A LEU 134 n 157 LEU 134 A ASP 135 n 158 ASP 135 A PRO 136 n 159 PRO 136 A VAL 137 n 160 VAL 137 A HIS 138 n 161 HIS 138 A GLY 139 n 162 GLY 139 A ALA 140 n 163 ALA 140 A PHE 141 n 164 PHE 141 A CYS 142 n 165 CYS 142 A GLU 143 n 166 GLU 143 A PRO 144 n 167 PRO 144 A LEU 145 n 168 LEU 145 A ALA 146 n 169 ALA 146 A CYS 147 n 170 CYS 147 A CYS 148 n 171 CYS 148 A LEU 149 n 172 LEU 149 A HIS 150 n 173 HIS 150 A GLY 151 n 174 GLY 151 A VAL 152 n 175 VAL 152 A ASP 153 n 176 ASP 153 A LEU 154 n 177 LEU 154 A SER 155 n 178 SER 155 A GLY 156 n 179 GLY 156 A ILE 157 n 180 ILE 157 A LYS 158 n 181 LYS 158 A ALA 159 n 182 ALA 159 A GLY 160 n 183 GLY 160 A SER 161 n 184 SER 161 A THR 162 n 185 THR 162 A VAL 163 n 186 VAL 163 A ALA 164 n 187 ALA 164 A ILE 165 n 188 ILE 165 A LEU 166 n 189 LEU 166 A GLY 167 n 190 GLY 167 A GLY 168 n 191 GLY 168 A GLY 169 n 192 GLY 169 A VAL 170 n 193 VAL 170 A ILE 171 n 194 ILE 171 A GLY 172 n 195 GLY 172 A LEU 173 n 196 LEU 173 A LEU 174 n 197 LEU 174 A THR 175 n 198 THR 175 A VAL 176 n 199 VAL 176 A GLN 177 n 200 GLN 177 A LEU 178 n 201 LEU 178 A ALA 179 n 202 ALA 179 A ARG 180 n 203 ARG 180 A LEU 181 n 204 LEU 181 A ALA 182 n 205 ALA 182 A GLY 183 n 206 GLY 183 A ALA 184 n 207 ALA 184 A THR 185 n 208 THR 185 A THR 186 n 209 THR 186 A VAL 187 n 210 VAL 187 A ILE 188 n 211 ILE 188 A LEU 189 n 212 LEU 189 A SER 190 n 213 SER 190 A THR 191 n 214 THR 191 A ARG 192 n 215 ARG 192 A GLN 193 n 216 GLN 193 A ALA 194 n 217 ALA 194 A THR 195 n 218 THR 195 A LYS 196 n 219 LYS 196 A ARG 197 n 220 ARG 197 A ARG 198 n 221 ARG 198 A LEU 199 n 222 LEU 199 A ALA 200 n 223 ALA 200 A GLU 201 n 224 GLU 201 A GLU 202 n 225 GLU 202 A VAL 203 n 226 VAL 203 A GLY 204 n 227 GLY 204 A ALA 205 n 228 ALA 205 A THR 206 n 229 THR 206 A ALA 207 n 230 ALA 207 A THR 208 n 231 THR 208 A VAL 209 n 232 VAL 209 A ASP 210 n 233 ASP 210 A PRO 211 n 234 PRO 211 A SER 212 n 235 SER 212 A ALA 213 n 236 ALA 213 A GLY 214 n 237 GLY 214 A ASP 215 n 238 ASP 215 A VAL 216 n 239 VAL 216 A VAL 217 n 240 VAL 217 A GLU 218 n 241 GLU 218 A ALA 219 n 242 ALA 219 A ILE 220 n 243 ILE 220 A ALA 221 n 244 ALA 221 A GLY 222 n 245 GLY 222 A PRO 223 n 246 PRO 223 A VAL 224 n 247 VAL 224 A GLY 225 n 248 GLY 225 A LEU 226 n 249 LEU 226 A VAL 227 n 250 VAL 227 A PRO 228 n 251 PRO 228 A GLY 229 n 252 GLY 229 A GLY 230 n 253 GLY 230 A VAL 231 n 254 VAL 231 A ASP 232 n 255 ASP 232 A VAL 233 n 256 VAL 233 A VAL 234 n 257 VAL 234 A ILE 235 n 258 ILE 235 A GLU 236 n 259 GLU 236 A CYS 237 n 260 CYS 237 A ALA 238 n 261 ALA 238 A GLY 239 n 262 GLY 239 A VAL 240 n 263 VAL 240 A ALA 241 n 264 ALA 241 A GLU 242 n 265 GLU 242 A THR 243 n 266 THR 243 A VAL 244 n 267 VAL 244 A LYS 245 n 268 LYS 245 A GLN 246 n 269 GLN 246 A SER 247 n 270 SER 247 A THR 248 n 271 THR 248 A ARG 249 n 272 ARG 249 A LEU 250 n 273 LEU 250 A ALA 251 n 274 ALA 251 A LYS 252 n 275 LYS 252 A ALA 253 n 276 ALA 253 A GLY 254 n 277 GLY 254 A GLY 255 n 278 GLY 255 A THR 256 n 279 THR 256 A VAL 257 n 280 VAL 257 A VAL 258 n 281 VAL 258 A ILE 259 n 282 ILE 259 A LEU 260 n 283 LEU 260 A GLY 261 n 284 GLY 261 A VAL 262 n 285 VAL 262 A LEU 263 n 286 LEU 263 A PRO 264 n 287 PRO 264 A GLN 265 n 288 GLN 265 A GLY 266 n 289 GLY 266 A GLU 267 n 290 GLU 267 A LYS 268 n 291 LYS 268 A VAL 269 n 292 VAL 269 A GLU 270 n 293 GLU 270 A ILE 271 n 294 ILE 271 A GLU 272 n 295 GLU 272 A PRO 273 n 296 PRO 273 A PHE 274 n 297 PHE 274 A ASP 275 n 298 ASP 275 A ILE 276 n 299 ILE 276 A LEU 277 n 300 LEU 277 A PHE 278 n 301 PHE 278 A ARG 279 n 302 ARG 279 A GLU 280 n 303 GLU 280 A LEU 281 n 304 LEU 281 A ARG 282 n 305 ARG 282 A VAL 283 n 306 VAL 283 A LEU 284 n 307 LEU 284 A GLY 285 n 308 GLY 285 A SER 286 n 309 SER 286 A PHE 287 n 310 PHE 287 A ILE 288 n 311 ILE 288 A ASN 289 n 312 ASN 289 A PRO 290 n 313 PRO 290 A PHE 291 n 314 PHE 291 A VAL 292 n 315 VAL 292 A HIS 293 n 316 HIS 293 A ARG 294 n 317 ARG 294 A ARG 295 n 318 ARG 295 A ALA 296 n 319 ALA 296 A ALA 297 n 320 ALA 297 A ASP 298 n 321 ASP 298 A LEU 299 n 322 LEU 299 A VAL 300 n 323 VAL 300 A ALA 301 n 324 ALA 301 A THR 302 n 325 THR 302 A GLY 303 n 326 GLY 303 A ALA 304 n 327 ALA 304 A ILE 305 n 328 ILE 305 A GLU 306 n 329 GLU 306 A ILE 307 n 330 ILE 307 A ASP 308 n 331 ASP 308 A ARG 309 n 332 ARG 309 A MSE 310 n 333 MSE 310 A ILE 311 n 334 ILE 311 A SER 312 n 335 SER 312 A ARG 313 n 336 ARG 313 A ARG 314 n 337 ARG 314 A ILE 315 n 338 ILE 315 A SER 316 n 339 SER 316 A LEU 317 n 340 LEU 317 A ASP 318 n 341 ASP 318 A GLU 319 n 342 GLU 319 A ALA 320 n 343 ALA 320 A PRO 321 n 344 PRO 321 A ASP 322 n 345 ASP 322 A VAL 323 n 346 VAL 323 A ILE 324 n 347 ILE 324 A SER 325 n 348 SER 325 A ASN 326 n 349 ASN 326 A PRO 327 n 350 PRO 327 A ALA 328 n 351 ALA 328 A ALA 329 n 352 ALA 329 A ALA 330 n 353 ALA 330 A GLY 331 n 354 GLY 331 A GLU 332 n 355 GLU 332 A VAL 333 n 356 VAL 333 A LYS 334 n 357 LYS 334 A VAL 335 n 358 VAL 335 A LEU 336 n 359 LEU 336 A VAL 337 n 360 VAL 337 A ILE 338 n 361 ILE 338 A PRO 339 n 362 PRO 339 A SER 340 n 363 SER 340 A n 364 341 A n 365 342 A n 366 343 A n 367 344 A n 368 345 A n 369 346 A n 370 347 A software_defined_assembly PISA 1 monomeric A CYS 91 A SG CYS 114 1_555 A ZN 418 S ZN ZN 1_555 A CYS 88 A SG CYS 111 1_555 107.2 A CYS 91 A SG CYS 114 1_555 A ZN 418 S ZN ZN 1_555 A CYS 94 A SG CYS 117 1_555 105.0 A CYS 88 A SG CYS 111 1_555 A ZN 418 S ZN ZN 1_555 A CYS 94 A SG CYS 117 1_555 120.6 A CYS 91 A SG CYS 114 1_555 A ZN 418 S ZN ZN 1_555 A CYS 102 A SG CYS 125 1_555 120.4 A CYS 88 A SG CYS 111 1_555 A ZN 418 S ZN ZN 1_555 A CYS 102 A SG CYS 125 1_555 102.9 A CYS 94 A SG CYS 117 1_555 A ZN 418 S ZN ZN 1_555 A CYS 102 A SG CYS 125 1_555 101.7 A MSE 0 SELENOMETHIONINE A MSE 23 MET A MSE 1 SELENOMETHIONINE A MSE 24 MET A MSE 310 SELENOMETHIONINE A MSE 333 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASN 11 A O ASN 34 A N SER 8 A N SER 31 A N LEU 6 A N LEU 29 A O VAL 54 A O VAL 77 A O VAL 120 A O VAL 143 A N VAL 29 A N VAL 52 A N LYS 30 A N LYS 53 A O ILE 63 A O ILE 86 A N GLY 62 A N GLY 85 A O ILE 80 A O ILE 103 A N THR 81 A N THR 104 A O PHE 128 A O PHE 151 A O VAL 120 A O VAL 143 A N VAL 29 A N VAL 52 A N CYS 34 A N CYS 57 A O VAL 337 A O VAL 360 A O LEU 336 A O LEU 359 A N ILE 315 A N ILE 338 A N ILE 86 A N ILE 109 A O ARG 106 A O ARG 129 A O VAL 209 A O VAL 232 A N LEU 189 A N LEU 212 A O ILE 188 A O ILE 211 A N ILE 165 A N ILE 188 A N ALA 164 A N ALA 187 A O VAL 233 A O VAL 256 A N VAL 234 A N VAL 257 A O VAL 258 A O VAL 281 A N VAL 257 A N VAL 280 A O ARG 282 A O ARG 305 1 A HOH 577 U HOH 1 A CG ARG 72 A CG ARG 95 1 Y 1 A CD ARG 72 A CD ARG 95 1 Y 1 A NE ARG 72 A NE ARG 95 1 Y 1 A CZ ARG 72 A CZ ARG 95 1 Y 1 A NH1 ARG 72 A NH1 ARG 95 1 Y 1 A NH2 ARG 72 A NH2 ARG 95 1 Y 1 A MSE -22 A MSE 1 1 Y 1 A HIS -21 A HIS 2 1 Y 1 A HIS -20 A HIS 3 1 Y 1 A HIS -19 A HIS 4 1 Y 1 A HIS -18 A HIS 5 1 Y 1 A HIS -17 A HIS 6 1 Y 1 A HIS -16 A HIS 7 1 Y 1 A SER -15 A SER 8 1 Y 1 A SER -14 A SER 9 1 Y 1 A GLY -13 A GLY 10 1 Y 1 A VAL -12 A VAL 11 1 Y 1 A ASP -11 A ASP 12 1 Y 1 A LEU -10 A LEU 13 1 Y 1 A GLY -9 A GLY 14 1 Y 1 A THR -8 A THR 15 1 Y 1 A GLU -7 A GLU 16 1 Y 1 A ASN -6 A ASN 17 1 Y 1 A LEU -5 A LEU 18 1 Y 1 A TYR -4 A TYR 19 1 Y 1 A PHE -3 A PHE 20 1 Y 1 A ALA 341 A ALA 364 1 Y 1 A GLU 342 A GLU 365 1 Y 1 A ARG 343 A ARG 366 1 Y 1 A VAL 344 A VAL 367 1 Y 1 A ALA 345 A ALA 368 1 Y 1 A GLN 346 A GLN 369 1 Y 1 A GLN 347 A GLN 370 1 Y 1 A ILE 110 -132.27 -60.72 1 A GLU 280 38.63 57.81 1 A ILE 288 40.32 -139.04 1 A VAL 333 -112.43 -76.49 74.440 36.4674 21.820 -1.2400 0.0000 0.0000 -1.2400 0.0000 2.4700 0.9680 0.9580 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.2018 0.1761 0.1774 1.8900 50 1627 32166 5.1000 99.7000 1.000 0.500 2.7270 0.0800 RANDOM 1 THROUGHOUT 0.000 SAD 0.1290 0.1180 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.8900 50 185 2747 70 0 2492 0.009 0.019 2636 0.002 0.020 1846 1.332 2.001 3561 0.890 3.000 4507 6.171 5.000 358 34.194 23.021 96 11.034 15.000 417 22.218 15.000 25 0.079 0.200 427 0.006 0.021 2926 0.001 0.020 491 0.2740 0.2250 1.9440 102 2019 2121 20 98.2900 30.4 1.89 50 4EJ6 32173 32173 0 0 0.083 1 33.7 23.0 99.8 1.90 1.93 5.4 1560 0.800 1 20.6 99.9 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.6.0117 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection CBASS data reduction HKL-2000 data scaling SCALEPACK phasing SHELX C phasing SHELXD model building SHELXE (HKL2MAP) Putative zinc-binding dehydrogenase (E.C.1.1.1.-) Crystal structure of a putative zinc-binding dehydrogenase (Target PSI-012003) from Sinorhizobium meliloti 1021 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N 5 N N A CYS 37 A CYS 60 HELX_P A HIS 45 A HIS 68 1 1 9 A CYS 91 A CYS 114 HELX_P A ALA 96 A ALA 119 1 2 6 A ARG 98 A ARG 121 HELX_P A CYS 102 A CYS 125 5 3 5 A VAL 137 A VAL 160 HELX_P A ALA 140 A ALA 163 5 4 4 A PHE 141 A PHE 164 HELX_P A GLY 156 A GLY 179 1 5 16 A GLY 169 A GLY 192 HELX_P A ALA 182 A ALA 205 1 6 14 A GLN 193 A GLN 216 HELX_P A VAL 203 A VAL 226 1 7 11 A ASP 215 A ASP 238 HELX_P A GLY 222 A GLY 245 1 8 8 A VAL 240 A VAL 263 HELX_P A LEU 250 A LEU 273 1 9 11 A GLU 272 A GLU 295 HELX_P A ARG 279 A ARG 302 1 10 8 A VAL 292 A VAL 315 HELX_P A THR 302 A THR 325 1 11 11 A ILE 307 A ILE 330 HELX_P A ARG 309 A ARG 332 5 12 3 A SER 316 A SER 339 HELX_P A ASP 318 A ASP 341 5 13 3 A GLU 319 A GLU 342 HELX_P A ASN 326 A ASN 349 1 14 8 covale 1.331 A SER -1 A C SER 22 1_555 A MSE 0 A N MSE 23 1_555 covale 1.331 A MSE 0 A C MSE 23 1_555 A MSE 1 A N MSE 24 1_555 covale 1.330 A MSE 1 A C MSE 24 1_555 A LYS 2 A N LYS 25 1_555 covale 1.330 A ARG 309 A C ARG 332 1_555 A MSE 310 A N MSE 333 1_555 covale 1.334 A MSE 310 A C MSE 333 1_555 A ILE 311 A N ILE 334 1_555 metalc 2.317 A CYS 91 A SG CYS 114 1_555 A ZN 418 S ZN ZN 1_555 metalc 2.326 A CYS 88 A SG CYS 111 1_555 A ZN 418 S ZN ZN 1_555 metalc 2.337 A CYS 94 A SG CYS 117 1_555 A ZN 418 S ZN ZN 1_555 metalc 2.367 A CYS 102 A SG CYS 125 1_555 A ZN 418 S ZN ZN 1_555 OXIDOREDUCTASE Structural genomics, NYSGRC, PSI-Biology, New York Structural Genomics Research Consortium, OXIDOREDUCTASE A PRO 52 A PRO 75 1 A PRO 53 A PRO 76 0.27 Q92PZ3_RHIME UNP 1 1 Q92PZ3 MKAVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARI TGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAG STVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGV AETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVHRRAADLVATGAIEIDRMISRRISLDEA PDVISNPAAAGEVKVLVIPSAERVAQQ 1 347 4EJ6 1 347 Q92PZ3 A 1 24 370 1 EXPRESSION TAG MSE -22 4EJ6 A Q92PZ3 UNP 1 1 EXPRESSION TAG HIS -21 4EJ6 A Q92PZ3 UNP 2 1 EXPRESSION TAG HIS -20 4EJ6 A Q92PZ3 UNP 3 1 EXPRESSION TAG HIS -19 4EJ6 A Q92PZ3 UNP 4 1 EXPRESSION TAG HIS -18 4EJ6 A Q92PZ3 UNP 5 1 EXPRESSION TAG HIS -17 4EJ6 A Q92PZ3 UNP 6 1 EXPRESSION TAG HIS -16 4EJ6 A Q92PZ3 UNP 7 1 EXPRESSION TAG SER -15 4EJ6 A Q92PZ3 UNP 8 1 EXPRESSION TAG SER -14 4EJ6 A Q92PZ3 UNP 9 1 EXPRESSION TAG GLY -13 4EJ6 A Q92PZ3 UNP 10 1 EXPRESSION TAG VAL -12 4EJ6 A Q92PZ3 UNP 11 1 EXPRESSION TAG ASP -11 4EJ6 A Q92PZ3 UNP 12 1 EXPRESSION TAG LEU -10 4EJ6 A Q92PZ3 UNP 13 1 EXPRESSION TAG GLY -9 4EJ6 A Q92PZ3 UNP 14 1 EXPRESSION TAG THR -8 4EJ6 A Q92PZ3 UNP 15 1 EXPRESSION TAG GLU -7 4EJ6 A Q92PZ3 UNP 16 1 EXPRESSION TAG ASN -6 4EJ6 A Q92PZ3 UNP 17 1 EXPRESSION TAG LEU -5 4EJ6 A Q92PZ3 UNP 18 1 EXPRESSION TAG TYR -4 4EJ6 A Q92PZ3 UNP 19 1 EXPRESSION TAG PHE -3 4EJ6 A Q92PZ3 UNP 20 1 EXPRESSION TAG GLN -2 4EJ6 A Q92PZ3 UNP 21 1 EXPRESSION TAG SER -1 4EJ6 A Q92PZ3 UNP 22 1 EXPRESSION TAG MSE 0 4EJ6 A Q92PZ3 UNP 23 3 5 4 2 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel parallel parallel parallel parallel A ASN 11 A ASN 34 A GLY 18 A GLY 41 A MSE 0 A MSE 23 A SER 8 A SER 31 A VAL 54 A VAL 77 A THR 55 A THR 78 A TYR 119 A TYR 142 A PRO 123 A PRO 146 A ASP 26 A ASP 49 A GLY 35 A GLY 58 A PHE 60 A PHE 83 A ALA 67 A ALA 90 A ARG 79 A ARG 102 A GLY 82 A GLY 105 A ALA 127 A ALA 150 A ILE 130 A ILE 153 A TYR 119 A TYR 142 A PRO 123 A PRO 146 A ASP 26 A ASP 49 A GLY 35 A GLY 58 A LYS 334 A LYS 357 A VAL 337 A VAL 360 A ILE 311 A ILE 334 A ILE 315 A ILE 338 A ASN 85 A ASN 108 A ILE 86 A ILE 109 A ARG 106 A ARG 129 A ALA 107 A ALA 130 A ALA 207 A ALA 230 A VAL 209 A VAL 232 A THR 186 A THR 209 A SER 190 A SER 213 A THR 162 A THR 185 A LEU 166 A LEU 189 A VAL 231 A VAL 254 A GLU 236 A GLU 259 A ALA 251 A ALA 274 A ILE 259 A ILE 282 A ARG 282 A ARG 305 A GLY 285 A GLY 308 BINDING SITE FOR RESIDUE EDO A 401 Software 7 BINDING SITE FOR RESIDUE EDO A 402 Software 4 BINDING SITE FOR RESIDUE EDO A 403 Software 1 BINDING SITE FOR RESIDUE EDO A 404 Software 4 BINDING SITE FOR RESIDUE EDO A 405 Software 1 BINDING SITE FOR RESIDUE EDO A 406 Software 5 BINDING SITE FOR RESIDUE EDO A 407 Software 4 BINDING SITE FOR RESIDUE EDO A 408 Software 4 BINDING SITE FOR RESIDUE EDO A 409 Software 5 BINDING SITE FOR RESIDUE EDO A 410 Software 6 BINDING SITE FOR RESIDUE EDO A 411 Software 6 BINDING SITE FOR RESIDUE EDO A 412 Software 2 BINDING SITE FOR RESIDUE EDO A 413 Software 4 BINDING SITE FOR RESIDUE EDO A 414 Software 3 BINDING SITE FOR RESIDUE EDO A 415 Software 3 BINDING SITE FOR RESIDUE EDO A 416 Software 4 BINDING SITE FOR RESIDUE EDO A 417 Software 5 BINDING SITE FOR RESIDUE ZN A 418 Software 4 BINDING SITE FOR RESIDUE CL A 419 Software 4 A ASP 83 A ASP 106 7 1_555 A GLN 95 A GLN 118 7 6_555 A LYS 125 A LYS 148 7 1_555 A PHE 128 A PHE 151 7 1_555 A HOH 524 U HOH 7 1_555 A HOH 552 U HOH 7 6_555 A HOH 569 U HOH 7 1_555 A GLN 265 A GLN 288 4 5_655 A GLU 272 A GLU 295 4 1_555 A PHE 274 A PHE 297 4 1_555 A ASP 275 A ASP 298 4 1_555 A ARG 197 A ARG 220 1 1_555 A PHE 48 A PHE 71 4 1_555 A PRO 264 A PRO 287 4 1_555 A GLN 265 A GLN 288 4 1_555 A HOH 655 U HOH 4 1_555 A GLU 32 A GLU 55 1 1_555 A GLN 177 A GLN 200 5 1_555 A ARG 180 A ARG 203 5 1_555 A VAL 203 A VAL 226 5 1_555 A GLY 204 A GLY 227 5 1_555 A HOH 634 U HOH 5 1_555 A GLY 168 A GLY 191 4 1_555 A THR 191 A THR 214 4 1_555 A ARG 192 A ARG 215 4 1_555 A GLN 193 A GLN 216 4 1_555 A THR 51 A THR 74 4 1_555 A PRO 53 A PRO 76 4 1_555 A HIS 111 A HIS 134 4 1_555 A ASP 113 A ASP 136 4 1_555 A GLY 229 A GLY 252 5 1_555 A LYS 252 A LYS 275 5 1_555 A ALA 253 A ALA 276 5 1_555 A ARG 279 A ARG 302 5 1_555 A HOH 662 U HOH 5 1_555 A THR 195 A THR 218 6 1_555 A LEU 199 A LEU 222 6 1_555 A GLU 202 A GLU 225 6 1_555 A ASP 308 A ASP 331 6 16_555 A HOH 544 U HOH 6 1_555 A HOH 584 U HOH 6 1_555 A ASP 308 A ASP 331 6 1_555 A ARG 309 A ARG 332 6 1_555 A ILE 311 A ILE 334 6 1_555 A HOH 544 U HOH 6 1_555 A HOH 577 U HOH 6 16_555 A HOH 577 U HOH 6 1_555 A GLU 218 A GLU 241 2 1_555 A EDO 415 P EDO 2 1_555 A LEU 101 A LEU 124 4 1_555 A PHE 278 A PHE 301 4 5_655 A ARG 279 A ARG 302 4 5_655 A HOH 674 U HOH 4 1_555 A SER 13 A SER 36 3 1_555 A VAL 14 A VAL 37 3 1_555 A ASP 318 A ASP 341 3 1_555 A ARG 249 A ARG 272 3 1_555 A EDO 412 M EDO 3 1_555 A HOH 542 U HOH 3 1_555 A PRO 92 A PRO 115 4 5_655 A GLN 93 A GLN 116 4 5_655 A LYS 252 A LYS 275 4 1_555 A HOH 676 U HOH 4 1_555 A GLU 129 A GLU 152 5 1_555 A ILE 130 A ILE 153 5 1_555 A PRO 131 A PRO 154 5 1_555 A HOH 608 U HOH 5 1_555 A HOH 681 U HOH 5 1_555 A CYS 88 A CYS 111 4 1_555 A CYS 91 A CYS 114 4 1_555 A CYS 94 A CYS 117 4 1_555 A CYS 102 A CYS 125 4 1_555 A GLY 167 A GLY 190 4 1_555 A GLY 169 A GLY 192 4 1_555 A GLY 172 A GLY 195 4 1_555 A CYS 237 A CYS 260 4 1_555 97 I 4 2 2