0.034698 0.000000 0.000000 0.000000 0.015237 0.000000 0.000000 0.000000 0.010761 0.000000 0.000000 0.000000 Tiefenbrunn, T. Stout, C.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 28.820 65.630 92.930 C9 H7 N O2 161.157 1H-indole-6-carboxylic acid non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C5 H10 O2 102.132 ISOVALERIC ACID non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C8 H17 N O3 175.225 STATINE peptide-like C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Acs Chem.Biol. 1554-8929 8 1223 1231 10.1021/cb300611p 23540839 Small molecule regulation of protein conformation by binding in the Flap of HIV protease. 2013 RESIDUES C ALA 5 AND C STA 6 ARE NOT PROPERLY LINKED. 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 Rh coated flat mirror CCD 2010-06-11 ADSC QUANTUM 315r Side scattering I-beam bent single crystal, asymmetric cut 4.9650 degrees SINGLE WAVELENGTH M x-ray 1 0.979 1.0 BL7-1 SSRL 0.979 SYNCHROTRON SSRL BEAMLINE BL7-1 10831.833 Protease 3.4.23.16 UNP residues 490-588 2 man polymer 685.891 pepstatin 1 syn polymer 78.133 BETA-MERCAPTOETHANOL 3 syn non-polymer 161.157 1H-indole-6-carboxylic acid 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 165 nat water PR, Retropepsin no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B polypeptide(L) no yes (IVA)VV(STA)A(STA) XVVXAX C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n R8 sample pol 11676 Human immunodeficiency virus 1 469008 Escherichia coli Rosetta2(DE3) pLysS plasmid pET-21a(+) 1 1.97 37.44 VAPOR DIFFUSION 6.5 0.2 M potassium bromide, 0.2 M potassium thiocyanate, 3% PGA-LM, 3% MPD, 10% DMSO, 0.1 M sodium cacodylate, pH 6.5, VAPOR DIFFUSION, temperature 298K 298 repository Initial release Database references 1 0 2013-05-01 1 1 2014-02-19 RCSB Y RCSB 2012-04-06 REL REL BME BETA-MERCAPTOETHANOL 1F1 1H-indole-6-carboxylic acid GOL GLYCEROL HOH water 285516 Streptomyces argenteolus subsp. toyonakensis sample Enzyme inhibitor Pepstatin Oligopeptide BME 4 3 BME BME 101 A 1F1 46 4 1F1 1F1 102 A GOL 1 5 GOL GOL 101 B BME 2 3 BME BME 102 B BME 3 3 BME BME 103 B HOH 10 6 HOH HOH 201 A HOH 11 6 HOH HOH 202 A HOH 12 6 HOH HOH 203 A HOH 13 6 HOH HOH 204 A HOH 16 6 HOH HOH 205 A HOH 17 6 HOH HOH 206 A HOH 18 6 HOH HOH 207 A HOH 19 6 HOH HOH 208 A HOH 21 6 HOH HOH 209 A HOH 22 6 HOH HOH 210 A HOH 23 6 HOH HOH 211 A HOH 24 6 HOH HOH 212 A HOH 30 6 HOH HOH 213 A HOH 31 6 HOH HOH 214 A HOH 33 6 HOH HOH 215 A HOH 35 6 HOH HOH 216 A HOH 38 6 HOH HOH 217 A HOH 40 6 HOH HOH 218 A HOH 41 6 HOH HOH 219 A HOH 42 6 HOH HOH 220 A HOH 43 6 HOH HOH 221 A HOH 45 6 HOH HOH 222 A HOH 48 6 HOH HOH 223 A HOH 51 6 HOH HOH 224 A HOH 55 6 HOH HOH 225 A HOH 58 6 HOH HOH 226 A HOH 61 6 HOH HOH 227 A HOH 62 6 HOH HOH 228 A HOH 63 6 HOH HOH 229 A HOH 67 6 HOH HOH 230 A HOH 68 6 HOH HOH 231 A HOH 71 6 HOH HOH 232 A HOH 74 6 HOH HOH 233 A HOH 75 6 HOH HOH 234 A HOH 76 6 HOH HOH 235 A HOH 77 6 HOH HOH 236 A HOH 79 6 HOH HOH 237 A HOH 81 6 HOH HOH 238 A HOH 82 6 HOH HOH 239 A HOH 83 6 HOH HOH 240 A HOH 90 6 HOH HOH 241 A HOH 93 6 HOH HOH 242 A HOH 96 6 HOH HOH 243 A HOH 97 6 HOH HOH 244 A HOH 98 6 HOH HOH 245 A HOH 102 6 HOH HOH 246 A HOH 104 6 HOH HOH 247 A HOH 108 6 HOH HOH 248 A HOH 109 6 HOH HOH 249 A HOH 111 6 HOH HOH 250 A HOH 116 6 HOH HOH 251 A HOH 119 6 HOH HOH 252 A HOH 120 6 HOH HOH 253 A HOH 121 6 HOH HOH 254 A HOH 123 6 HOH HOH 255 A HOH 125 6 HOH HOH 256 A HOH 129 6 HOH HOH 257 A HOH 131 6 HOH HOH 258 A HOH 134 6 HOH HOH 259 A HOH 135 6 HOH HOH 260 A HOH 136 6 HOH HOH 261 A HOH 138 6 HOH HOH 262 A HOH 139 6 HOH HOH 263 A HOH 140 6 HOH HOH 264 A HOH 141 6 HOH HOH 265 A HOH 142 6 HOH HOH 266 A HOH 144 6 HOH HOH 267 A HOH 146 6 HOH HOH 268 A HOH 151 6 HOH HOH 269 A HOH 153 6 HOH HOH 270 A HOH 154 6 HOH HOH 271 A HOH 155 6 HOH HOH 272 A HOH 158 6 HOH HOH 273 A HOH 159 6 HOH HOH 274 A HOH 160 6 HOH HOH 275 A HOH 164 6 HOH HOH 276 A HOH 166 6 HOH HOH 277 A HOH 168 6 HOH HOH 278 A HOH 169 6 HOH HOH 279 A HOH 5 6 HOH HOH 201 B HOH 6 6 HOH HOH 202 B HOH 7 6 HOH HOH 203 B HOH 8 6 HOH HOH 204 B HOH 9 6 HOH HOH 205 B HOH 14 6 HOH HOH 206 B HOH 15 6 HOH HOH 207 B HOH 20 6 HOH HOH 208 B HOH 25 6 HOH HOH 209 B HOH 26 6 HOH HOH 210 B HOH 27 6 HOH HOH 211 B HOH 28 6 HOH HOH 212 B HOH 29 6 HOH HOH 213 B HOH 32 6 HOH HOH 214 B HOH 34 6 HOH HOH 215 B HOH 37 6 HOH HOH 216 B HOH 39 6 HOH HOH 217 B HOH 44 6 HOH HOH 218 B HOH 47 6 HOH HOH 219 B HOH 49 6 HOH HOH 220 B HOH 50 6 HOH HOH 221 B HOH 53 6 HOH HOH 222 B HOH 54 6 HOH HOH 223 B HOH 56 6 HOH HOH 224 B HOH 57 6 HOH HOH 225 B HOH 59 6 HOH HOH 226 B HOH 60 6 HOH HOH 227 B HOH 64 6 HOH HOH 228 B HOH 66 6 HOH HOH 229 B HOH 69 6 HOH HOH 230 B HOH 70 6 HOH HOH 231 B HOH 72 6 HOH HOH 232 B HOH 73 6 HOH HOH 233 B HOH 78 6 HOH HOH 234 B HOH 80 6 HOH HOH 235 B HOH 84 6 HOH HOH 236 B HOH 85 6 HOH HOH 237 B HOH 86 6 HOH HOH 238 B HOH 87 6 HOH HOH 239 B HOH 88 6 HOH HOH 240 B HOH 89 6 HOH HOH 241 B HOH 91 6 HOH HOH 242 B HOH 92 6 HOH HOH 243 B HOH 94 6 HOH HOH 244 B HOH 99 6 HOH HOH 245 B HOH 100 6 HOH HOH 246 B HOH 101 6 HOH HOH 247 B HOH 103 6 HOH HOH 248 B HOH 105 6 HOH HOH 249 B HOH 106 6 HOH HOH 250 B HOH 107 6 HOH HOH 251 B HOH 110 6 HOH HOH 252 B HOH 112 6 HOH HOH 253 B HOH 113 6 HOH HOH 254 B HOH 114 6 HOH HOH 255 B HOH 115 6 HOH HOH 256 B HOH 117 6 HOH HOH 257 B HOH 118 6 HOH HOH 258 B HOH 122 6 HOH HOH 259 B HOH 124 6 HOH HOH 260 B HOH 126 6 HOH HOH 261 B HOH 127 6 HOH HOH 262 B HOH 128 6 HOH HOH 263 B HOH 130 6 HOH HOH 264 B HOH 132 6 HOH HOH 265 B HOH 133 6 HOH HOH 266 B HOH 137 6 HOH HOH 267 B HOH 143 6 HOH HOH 268 B HOH 145 6 HOH HOH 269 B HOH 147 6 HOH HOH 270 B HOH 148 6 HOH HOH 271 B HOH 149 6 HOH HOH 272 B HOH 150 6 HOH HOH 273 B HOH 156 6 HOH HOH 274 B HOH 157 6 HOH HOH 275 B HOH 161 6 HOH HOH 276 B HOH 162 6 HOH HOH 277 B HOH 163 6 HOH HOH 278 B HOH 165 6 HOH HOH 279 B HOH 167 6 HOH HOH 280 B HOH 170 6 HOH HOH 281 B HOH 65 6 HOH HOH 101 C HOH 95 6 HOH HOH 102 C HOH 36 6 HOH HOH 103 C HOH 52 6 HOH HOH 104 C HOH 152 6 HOH HOH 105 C 47.980 1.800 1.800 21.900 21.900 Phaser MODE: MR_AUTO PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B ASN 37 n 37 ASN 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B IVA 1 n 1 IVA 1 C VAL 2 n 2 VAL 2 C VAL 3 n 3 VAL 3 C STA 4 n 4 STA 4 C ALA 5 n 5 ALA 5 C STA 6 n 6 STA 6 C author_and_software_defined_assembly PISA 3 trimeric 5850 -40 9510 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O ASN 98 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 C O VAL 3 C O VAL 3 A N GLY 48 A N GLY 48 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 64 A N ILE 64 A O ALA 71 A O ALA 71 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 43 B N LYS 43 B O GLN 58 B O GLN 58 B N ARG 57 B N ARG 57 B O VAL 77 B O VAL 77 B O LEU 76 B O LEU 76 B N LEU 33 B N LEU 33 B N VAL 32 B N VAL 32 B O ILE 84 B O ILE 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O LYS 20 B O LYS 20 B N ILE 13 B N ILE 13 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 A CG GLU 35 A CG GLU 35 1 Y 1 A CD GLU 35 A CD GLU 35 1 Y 1 A OE1 GLU 35 A OE1 GLU 35 1 Y 1 A OE2 GLU 35 A OE2 GLU 35 1 Y 1 B NZ LYS 20 B NZ LYS 20 1 Y 1 B NZ LYS 70 B NZ LYS 70 1 Y 1 A A O O HOH HOH 254 258 1.86 1 B B O NE2 ILE GLN 72 92 2.12 A 1 C STA 4 33.57 1 C C STA ALA 4 5 -112.74 1 A ASP 30 0.070 SIDE CHAIN 1 A GLN 92 0.097 SIDE CHAIN 1 C C C N ALA STA 5 6 1.18 1 12.19 1.60 110.90 123.09 A A A CG1 CB CG2 VAL VAL VAL 32 32 32 A A N 1 25.62 2.20 117.20 142.82 C C C CA C N STA STA ALA 4 4 5 Y 1 C C C N ALA STA 5 6 -0.157 0.023 1.336 1.179 Y 1 B B CE O MET THR 46 80 2.12 C 1_555 4_455 1 A GLU 35 -35.55 124.23 95.580 14.7297 4.790 -0.0200 0.0000 -0.0000 -0.0100 0.0000 0.0200 0.9670 0.9540 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.1762 0.1459 0.1475 1.103 18.96 3543 70371 5.0 97.77 0.1778 0.1467 1.000 0.160 0.9194 0.9340 0.0210 0.0319 0.0333 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.0320 0.0330 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 1.103 18.96 165 1757 30 0 1562 0.010 0.019 1728 0.000 0.020 1194 1.442 2.017 2332 2.064 3.000 2972 6.865 5.000 215 40.956 24.516 62 14.202 15.000 329 11.903 15.000 11 0.139 0.200 276 0.015 0.021 1834 0.002 0.020 304 10.330 3.000 2915 35.424 5.000 66 10.978 5.000 2987 0.2780 0.2620 1.132 216 4652 4868 20 99.49 1.103 92.930 4EJD 70609 70609 0.089 1 8.3 3.4 98.3 0.483 1.103 1.160 1.5 34370 10342 0.483 1 3.3 99.9 0.335 1.160 1.230 2.2 33166 9802 0.335 1 3.4 99.9 0.262 1.230 1.320 2.8 31661 9277 0.262 1 3.4 99.9 0.194 1.320 1.420 3.8 29480 8587 0.194 1 3.4 99.8 0.127 1.420 1.560 5.6 27331 7945 0.127 1 3.4 99.9 0.079 1.560 1.740 8.9 24667 7235 0.079 1 3.4 99.8 0.068 1.740 2.010 8.1 21652 6378 0.068 1 3.4 99.6 0.077 2.010 2.470 7.8 17123 5428 0.077 1 3.2 99.1 0.043 2.470 3.490 14.2 14361 4155 0.043 1 3.5 96.6 0.052 3.490 21.901 10.8 4093 1460 0.052 1 2.8 57.9 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk 2010/01/06 http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package 3.3.16 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 2010/01/06 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.3.16 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Mon Feb 8 16:31:08 2010 http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.1.4 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection Blu-Ice Protease (E.C.3.4.23.16), pepstatin HIV Protease (PR) dimer in closed form with pepstatin in active site and fragment 1F1 in the outside/top of flap 1 N N 1 N N 2 N N 3 N N 4 N N 5 N N 3 N N 3 N N 6 N N 6 N N 6 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 3 6 B GLN 92 B GLN 92 HELX_P B GLY 94 B GLY 94 5 4 3 covale 1.339 sing C IVA 1 C C IVA 1 1_555 C VAL 2 C N VAL 2 1_555 covale 1.416 sing C VAL 3 C C VAL 3 1_555 C STA 4 C N STA 4 1_555 covale 1.317 sing C STA 4 C C STA 4 1_555 C ALA 5 C N ALA 5 1_555 covale 1.179 sing C ALA 5 C C ALA 5 1_555 C STA 6 C N STA 6 1_555 HYDROLASE/HYDROLASE INHIBITOR apo protease, allostery, fragment binding, HYDROLASE-HYDROLASE INHIBITOR complex POL_HV1Z2 UNP 1 490 P12499 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 4EJD PDB 2 1 4EJD (IVA)VV(STA)A(STA) 490 588 4EJD 1 99 P12499 A 1 1 99 490 588 4EJD 1 99 P12499 B 1 1 99 1 6 4EJD 1 6 4EJD C 2 1 6 1 GLN CONFLICT LYS 7 4EJD A P12499 UNP 496 7 1 LYS CONFLICT ARG 41 4EJD A P12499 UNP 530 41 2 GLN CONFLICT LYS 7 4EJD B P12499 UNP 496 7 2 LYS CONFLICT ARG 41 4EJD B P12499 UNP 530 41 4 9 8 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 C VAL 2 C VAL 2 C VAL 3 C VAL 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B ILE 84 B ILE 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLY 52 B GLY 52 B ILE 66 B ILE 66 BINDING SITE FOR RESIDUE BME A 101 Software 7 BINDING SITE FOR RESIDUE 1F1 A 102 Software 11 BINDING SITE FOR RESIDUE GOL B 101 Software 10 BINDING SITE FOR RESIDUE BME B 102 Software 5 BINDING SITE FOR RESIDUE BME B 103 Software 5 BINDING SITE FOR CHAIN C OF PEPSTATIN Software 22 A LEU 10 A LEU 10 7 1_555 A VAL 11 A VAL 11 7 1_555 A THR 12 A THR 12 7 1_555 A CYS 67 A CYS 67 7 1_555 A HOH 207 I HOH 7 1_555 B LYS 7 B LYS 7 7 1_455 B HOH 246 J HOH 7 1_455 A PRO 44 A PRO 44 11 1_555 A LYS 45 A LYS 45 11 1_555 A LYS 55 A LYS 55 11 1_555 A VAL 56 A VAL 56 11 1_555 A ARG 57 A ARG 57 11 1_555 A THR 91 A THR 91 11 3_655 A GLN 92 A GLN 92 11 3_655 A GLY 94 A GLY 94 11 3_655 A HOH 209 I HOH 11 3_655 A HOH 278 I HOH 11 1_555 B HOH 233 J HOH 11 3_655 A GLY 49 A GLY 49 10 4_455 A GLY 51 A GLY 51 10 4_455 A GLY 52 A GLY 52 10 4_455 B PRO 44 B PRO 44 10 1_555 B MET 46 B MET 46 10 1_555 B LYS 55 B LYS 55 10 1_555 B PRO 81 B PRO 81 10 4_455 B HOH 225 J HOH 10 1_555 B HOH 251 J HOH 10 4_455 C HOH 104 K HOH 10 4_455 A LYS 7 A LYS 7 5 1_655 A HOH 227 I HOH 5 1_655 B VAL 11 B VAL 11 5 1_555 B CYS 67 B CYS 67 5 1_555 B BME 103 H BME 5 1_555 A LYS 7 A LYS 7 5 1_655 A HOH 227 I HOH 5 1_655 B THR 12 B THR 12 5 1_555 B CYS 67 B CYS 67 5 1_555 B BME 102 G BME 5 1_555 A ARG 8 A ARG 8 22 1_555 A ASP 25 A ASP 25 22 1_555 A GLY 27 A GLY 27 22 1_555 A ALA 28 A ALA 28 22 1_555 A ASP 29 A ASP 29 22 1_555 A ASP 30 A ASP 30 22 1_555 A LYS 45 A LYS 45 22 1_555 A ILE 47 A ILE 47 22 1_555 A GLY 48 A GLY 48 22 1_555 A GLY 49 A GLY 49 22 1_555 A ILE 84 A ILE 84 22 1_555 B ARG 8 B ARG 8 22 1_555 B ASP 25 B ASP 25 22 1_555 B GLY 27 B GLY 27 22 1_555 B ALA 28 B ALA 28 22 1_555 B ASP 29 B ASP 29 22 1_555 B ASP 30 B ASP 30 22 1_555 B GLY 48 B GLY 48 22 1_555 B HOH 231 J HOH 22 1_555 C HOH 102 K HOH 22 1_555 C HOH 103 K HOH 22 1_555 C HOH 105 K HOH 22 1_555 19 P 21 21 21