0.017927 0.000000 0.000000 0.000000 0.017927 0.000000 0.000000 0.000000 0.007551 0.000000 0.000000 0.000000 Chang, C. Li, H. Bearden, J. Joachimiak, A. Midwest Center for Structural Genomics (MCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 55.783 55.783 132.425 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O 46.068 ETHANOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking TO BE PUBLISHED 0353 Crystal structure of padr family transcriptional regulator from Eggerthella lenta DSM 2243 100.0 1 CCD 2010-10-11 ADSC QUANTUM 315r SI(111)DOUBLE CRYSTAL MAD M x-ray 1 0.97948 1.0 0.97959 1.0 19-ID APS 0.97948, 0.97959 SYNCHROTRON APS BEAMLINE 19-ID 14110.361 Transcriptional regulator, PadR-like family 2 man polymer 46.068 ETHANOL 1 syn non-polymer 18.015 water 22 nat water no yes SNA(MSE)AYDDIVSS(MSE)VLELRRGTLV(MSE)LVLSQLREPAYGYALVKSLADHGIPIEANTLYPL(MSE)RRLES QGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER SNAMAYDDIVSSMVLELRRGTLVMLVLSQLREPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPR KYYRTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER A,B MCSG-APC100099 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255 sample Elen_1533 479437 Eggerthella lenta 469008 Escherichia coli BL21(DE3) MAGIC 1 1.830 32.610 VAPOR DIFFUSION, SITTING DROP 4.2 0.1M PHOSPHATE-CITRATE PH 4.2, 40% ETHANOL, 5% PEG 1000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE, temperature 277 K 277 Midwest Center for Structural Genomics MCSG PSI:Biology repository Initial release 1 0 2012-04-25 2012-04-25 SPRSDE Y RCSB Y RCSB 2012-04-06 REL REL EOH ETHANOL HOH water EOH 1 2 EOH EOH 201 A HOH 3 3 HOH HOH 301 A HOH 8 3 HOH HOH 302 A HOH 11 3 HOH HOH 303 A HOH 20 3 HOH HOH 304 A HOH 22 3 HOH HOH 305 A HOH 24 3 HOH HOH 306 A HOH 1 3 HOH HOH 201 B HOH 2 3 HOH HOH 202 B HOH 5 3 HOH HOH 203 B HOH 6 3 HOH HOH 204 B HOH 7 3 HOH HOH 205 B HOH 9 3 HOH HOH 206 B HOH 10 3 HOH HOH 207 B HOH 12 3 HOH HOH 208 B HOH 13 3 HOH HOH 209 B HOH 15 3 HOH HOH 210 B HOH 16 3 HOH HOH 211 B HOH 17 3 HOH HOH 212 B HOH 18 3 HOH HOH 213 B HOH 19 3 HOH HOH 214 B HOH 21 3 HOH HOH 215 B HOH 23 3 HOH HOH 216 B n 1 -2 A n 2 -1 A ALA 0 n 3 ALA 0 A MSE 1 n 4 MSE 1 A ALA 2 n 5 ALA 2 A TYR 3 n 6 TYR 3 A ASP 4 n 7 ASP 4 A ASP 5 n 8 ASP 5 A ILE 6 n 9 ILE 6 A VAL 7 n 10 VAL 7 A SER 8 n 11 SER 8 A SER 9 n 12 SER 9 A MSE 10 n 13 MSE 10 A VAL 11 n 14 VAL 11 A LEU 12 n 15 LEU 12 A GLU 13 n 16 GLU 13 A LEU 14 n 17 LEU 14 A ARG 15 n 18 ARG 15 A ARG 16 n 19 ARG 16 A GLY 17 n 20 GLY 17 A THR 18 n 21 THR 18 A LEU 19 n 22 LEU 19 A VAL 20 n 23 VAL 20 A MSE 21 n 24 MSE 21 A LEU 22 n 25 LEU 22 A VAL 23 n 26 VAL 23 A LEU 24 n 27 LEU 24 A SER 25 n 28 SER 25 A GLN 26 n 29 GLN 26 A LEU 27 n 30 LEU 27 A ARG 28 n 31 ARG 28 A GLU 29 n 32 GLU 29 A PRO 30 n 33 PRO 30 A ALA 31 n 34 ALA 31 A TYR 32 n 35 TYR 32 A GLY 33 n 36 GLY 33 A TYR 34 n 37 TYR 34 A ALA 35 n 38 ALA 35 A LEU 36 n 39 LEU 36 A VAL 37 n 40 VAL 37 A LYS 38 n 41 LYS 38 A SER 39 n 42 SER 39 A LEU 40 n 43 LEU 40 A ALA 41 n 44 ALA 41 A ASP 42 n 45 ASP 42 A HIS 43 n 46 HIS 43 A GLY 44 n 47 GLY 44 A ILE 45 n 48 ILE 45 A PRO 46 n 49 PRO 46 A ILE 47 n 50 ILE 47 A GLU 48 n 51 GLU 48 A ALA 49 n 52 ALA 49 A ASN 50 n 53 ASN 50 A THR 51 n 54 THR 51 A LEU 52 n 55 LEU 52 A TYR 53 n 56 TYR 53 A PRO 54 n 57 PRO 54 A LEU 55 n 58 LEU 55 A MSE 56 n 59 MSE 56 A ARG 57 n 60 ARG 57 A ARG 58 n 61 ARG 58 A LEU 59 n 62 LEU 59 A GLU 60 n 63 GLU 60 A SER 61 n 64 SER 61 A GLN 62 n 65 GLN 62 A GLY 63 n 66 GLY 63 A LEU 64 n 67 LEU 64 A LEU 65 n 68 LEU 65 A ALA 66 n 69 ALA 66 A SER 67 n 70 SER 67 A GLU 68 n 71 GLU 68 A TRP 69 n 72 TRP 69 A ASP 70 n 73 ASP 70 A ASN 71 n 74 ASN 71 A GLY 72 n 75 GLY 72 A GLY 73 n 76 GLY 73 A SER 74 n 77 SER 74 A LYS 75 n 78 LYS 75 A PRO 76 n 79 PRO 76 A ARG 77 n 80 ARG 77 A LYS 78 n 81 LYS 78 A TYR 79 n 82 TYR 79 A TYR 80 n 83 TYR 80 A ARG 81 n 84 ARG 81 A THR 82 n 85 THR 82 A THR 83 n 86 THR 83 A ASP 84 n 87 ASP 84 A GLU 85 n 88 GLU 85 A GLY 86 n 89 GLY 86 A LEU 87 n 90 LEU 87 A ARG 88 n 91 ARG 88 A VAL 89 n 92 VAL 89 A LEU 90 n 93 LEU 90 A ARG 91 n 94 ARG 91 A GLU 92 n 95 GLU 92 A VAL 93 n 96 VAL 93 A GLU 94 n 97 GLU 94 A ALA 95 n 98 ALA 95 A GLN 96 n 99 GLN 96 A TRP 97 n 100 TRP 97 A HIS 98 n 101 HIS 98 A VAL 99 n 102 VAL 99 A LEU 100 n 103 LEU 100 A CYS 101 n 104 CYS 101 A ASP 102 n 105 ASP 102 A GLY 103 n 106 GLY 103 A VAL 104 n 107 VAL 104 A GLY 105 n 108 GLY 105 A LYS 106 n 109 LYS 106 A LEU 107 n 110 LEU 107 A LEU 108 n 111 LEU 108 A GLU 109 n 112 GLU 109 A THR 110 n 113 THR 110 A ASN 111 n 114 ASN 111 A n 115 112 A n 116 113 A n 117 114 A n 118 115 A n 119 116 A n 120 117 A n 121 118 A n 122 119 A n 123 120 A n 1 -2 B n 2 -1 B ALA 0 n 3 ALA 0 B MSE 1 n 4 MSE 1 B ALA 2 n 5 ALA 2 B TYR 3 n 6 TYR 3 B ASP 4 n 7 ASP 4 B ASP 5 n 8 ASP 5 B ILE 6 n 9 ILE 6 B VAL 7 n 10 VAL 7 B SER 8 n 11 SER 8 B SER 9 n 12 SER 9 B MSE 10 n 13 MSE 10 B VAL 11 n 14 VAL 11 B LEU 12 n 15 LEU 12 B GLU 13 n 16 GLU 13 B LEU 14 n 17 LEU 14 B ARG 15 n 18 ARG 15 B ARG 16 n 19 ARG 16 B GLY 17 n 20 GLY 17 B THR 18 n 21 THR 18 B LEU 19 n 22 LEU 19 B VAL 20 n 23 VAL 20 B MSE 21 n 24 MSE 21 B LEU 22 n 25 LEU 22 B VAL 23 n 26 VAL 23 B LEU 24 n 27 LEU 24 B SER 25 n 28 SER 25 B GLN 26 n 29 GLN 26 B LEU 27 n 30 LEU 27 B ARG 28 n 31 ARG 28 B GLU 29 n 32 GLU 29 B PRO 30 n 33 PRO 30 B ALA 31 n 34 ALA 31 B TYR 32 n 35 TYR 32 B GLY 33 n 36 GLY 33 B TYR 34 n 37 TYR 34 B ALA 35 n 38 ALA 35 B LEU 36 n 39 LEU 36 B VAL 37 n 40 VAL 37 B LYS 38 n 41 LYS 38 B SER 39 n 42 SER 39 B LEU 40 n 43 LEU 40 B ALA 41 n 44 ALA 41 B ASP 42 n 45 ASP 42 B HIS 43 n 46 HIS 43 B GLY 44 n 47 GLY 44 B ILE 45 n 48 ILE 45 B PRO 46 n 49 PRO 46 B ILE 47 n 50 ILE 47 B n 51 48 B n 52 49 B n 53 50 B THR 51 n 54 THR 51 B LEU 52 n 55 LEU 52 B TYR 53 n 56 TYR 53 B PRO 54 n 57 PRO 54 B LEU 55 n 58 LEU 55 B MSE 56 n 59 MSE 56 B ARG 57 n 60 ARG 57 B ARG 58 n 61 ARG 58 B LEU 59 n 62 LEU 59 B GLU 60 n 63 GLU 60 B SER 61 n 64 SER 61 B GLN 62 n 65 GLN 62 B GLY 63 n 66 GLY 63 B LEU 64 n 67 LEU 64 B LEU 65 n 68 LEU 65 B ALA 66 n 69 ALA 66 B SER 67 n 70 SER 67 B GLU 68 n 71 GLU 68 B TRP 69 n 72 TRP 69 B ASP 70 n 73 ASP 70 B ASN 71 n 74 ASN 71 B GLY 72 n 75 GLY 72 B GLY 73 n 76 GLY 73 B n 77 74 B LYS 75 n 78 LYS 75 B PRO 76 n 79 PRO 76 B ARG 77 n 80 ARG 77 B LYS 78 n 81 LYS 78 B TYR 79 n 82 TYR 79 B TYR 80 n 83 TYR 80 B ARG 81 n 84 ARG 81 B THR 82 n 85 THR 82 B THR 83 n 86 THR 83 B ASP 84 n 87 ASP 84 B GLU 85 n 88 GLU 85 B GLY 86 n 89 GLY 86 B LEU 87 n 90 LEU 87 B ARG 88 n 91 ARG 88 B VAL 89 n 92 VAL 89 B LEU 90 n 93 LEU 90 B ARG 91 n 94 ARG 91 B GLU 92 n 95 GLU 92 B VAL 93 n 96 VAL 93 B GLU 94 n 97 GLU 94 B ALA 95 n 98 ALA 95 B GLN 96 n 99 GLN 96 B TRP 97 n 100 TRP 97 B HIS 98 n 101 HIS 98 B VAL 99 n 102 VAL 99 B LEU 100 n 103 LEU 100 B CYS 101 n 104 CYS 101 B ASP 102 n 105 ASP 102 B GLY 103 n 106 GLY 103 B VAL 104 n 107 VAL 104 B GLY 105 n 108 GLY 105 B LYS 106 n 109 LYS 106 B LEU 107 n 110 LEU 107 B LEU 108 n 111 LEU 108 B GLU 109 n 112 GLU 109 B THR 110 n 113 THR 110 B ASN 111 n 114 ASN 111 B GLY 112 n 115 GLY 112 B GLU 113 n 116 GLU 113 B ASP 114 n 117 ASP 114 B ARG 115 n 118 ARG 115 B n 119 116 B n 120 117 B n 121 118 B n 122 119 B n 123 120 B 0.1036 1.3764 0.1575 26.8957 -5.9769 8.4597 0.0371 0.0316 0.0701 0.2360 0.3887 1.2135 0.3805 -0.2922 -0.4258 0.1531 0.0176 0.0234 0.2593 0.0804 0.3183 refined 19.7260 14.9470 9.9010 X-RAY DIFFRACTION 1.8825 -1.9299 -1.0358 4.9239 0.7224 0.6162 -0.0107 -0.0241 -0.0211 -0.1848 0.0411 0.1674 0.0608 0.0027 -0.0304 0.1909 -0.0053 -0.0576 0.1893 -0.0126 0.3055 refined 21.5170 35.6110 5.7370 X-RAY DIFFRACTION 11.6429 -4.7070 8.4849 1.9074 -3.4322 6.1879 -0.3679 -0.2534 0.2208 0.1483 0.1219 -0.1031 -0.3024 -0.1813 0.2460 0.2226 0.0366 0.0048 0.1953 -0.0471 0.4618 refined 10.3370 46.0310 7.7170 X-RAY DIFFRACTION 16.6783 14.5975 12.6634 13.6907 12.8182 12.9071 0.5655 -0.0861 -0.4577 0.3822 -0.1909 -0.4226 0.2045 -0.2718 -0.3746 0.1407 0.1153 -0.1490 0.1163 -0.1355 0.4584 refined 11.0650 35.4210 4.6250 X-RAY DIFFRACTION 4.1164 2.5886 -1.3985 5.5687 -0.7174 0.4843 -0.1806 -0.4418 -0.2434 -0.3043 0.0575 0.1539 0.0616 0.1462 0.1231 0.2061 0.0449 -0.0254 0.2282 0.0213 0.3193 refined 17.6490 37.7100 15.3140 X-RAY DIFFRACTION 5.5255 -0.1955 2.6152 0.8955 0.0702 1.2719 0.0246 -0.5635 0.1817 0.0892 -0.1182 0.0881 0.0411 -0.2657 0.0935 0.2030 0.0033 -0.0060 0.2341 -0.0457 0.3217 refined 14.6080 50.3050 13.2290 X-RAY DIFFRACTION 0.2941 -1.3596 -0.3579 7.8230 2.5926 1.1736 -0.0126 0.0101 0.0668 0.0208 0.1530 -0.1179 -0.0335 -0.0475 -0.1403 0.1588 0.0101 -0.0003 0.2790 0.0810 0.3507 refined 29.3930 44.8310 1.8030 X-RAY DIFFRACTION 3.4566 -7.2655 -2.6939 19.7981 4.4248 2.5235 -0.2599 -0.2160 -0.1314 0.0229 0.1279 0.1879 0.1983 0.2855 0.1320 0.2403 -0.0102 0.0225 0.1744 0.0224 0.2732 refined 34.0060 26.1050 -3.5750 X-RAY DIFFRACTION 2.7235 1.5614 -1.0205 16.5680 7.7037 5.2088 0.0631 0.0253 -0.4232 0.3994 -0.2387 -0.3971 0.2929 -0.3055 0.1757 0.1716 0.0067 0.0499 0.2364 -0.0412 0.3454 refined 7.6170 -13.8130 -7.2880 X-RAY DIFFRACTION 1.6882 3.1803 -0.2124 7.0947 1.8890 4.8675 -0.3268 -0.1479 0.1706 -0.5899 -0.3191 0.5972 0.3836 -0.1644 0.6459 0.2780 0.0260 -0.0237 0.2058 0.0084 0.4322 refined 6.2570 7.5980 -3.3000 X-RAY DIFFRACTION 23.7477 -1.5017 9.1805 0.0960 -0.5818 3.5507 -0.1267 0.5956 -0.0538 0.0220 0.0395 -0.0121 -0.0922 0.2379 0.0872 0.2247 -0.0698 0.0003 0.1394 0.0652 0.4241 refined 17.5990 18.0870 -5.2420 X-RAY DIFFRACTION 12.1787 -2.1947 1.8920 17.5995 -22.9482 30.0033 -0.0967 -0.8000 -0.1279 0.1192 0.4087 0.2829 -0.1371 -0.4325 -0.3120 0.1262 -0.0190 0.0197 0.1731 0.0003 0.3881 refined 16.7290 7.6320 -2.1380 X-RAY DIFFRACTION 4.4744 -17.7931 -0.9860 70.7913 3.9213 0.2173 -0.0759 0.0911 -0.3510 0.7808 -0.1350 1.2918 0.0423 -0.0153 0.2109 0.5704 -0.6714 0.1910 0.8180 -0.2911 0.3450 refined 9.1910 10.6580 -12.5210 X-RAY DIFFRACTION 1.9469 -0.4945 -1.4100 2.4418 -1.7932 3.0197 0.0820 0.1095 0.0875 -0.1203 -0.0018 -0.0006 0.0256 -0.1075 -0.0801 0.1717 -0.0172 -0.0214 0.2112 0.0187 0.3068 refined 13.2690 22.4560 -10.8550 X-RAY DIFFRACTION 5.2432 -0.9421 -2.9476 9.3223 -4.3598 4.2702 0.1171 -0.0410 -0.2680 0.1215 -0.2683 0.0862 -0.1440 0.1852 0.1512 0.1413 0.0007 0.0138 0.2317 0.0826 0.3837 refined -1.4490 16.8640 0.7430 X-RAY DIFFRACTION 3.7298 -0.2526 -1.5030 14.6798 -1.4950 0.7809 -0.0893 0.3386 0.0670 0.7579 0.1471 0.0608 -0.0409 -0.1605 -0.0578 0.1489 -0.0205 -0.0166 0.2091 0.0281 0.2957 refined -6.4920 -2.7940 6.3930 X-RAY DIFFRACTION A 0 A 12 X-RAY DIFFRACTION 1 A 13 A 28 X-RAY DIFFRACTION 2 A 29 A 34 X-RAY DIFFRACTION 3 A 35 A 45 X-RAY DIFFRACTION 4 A 46 A 59 X-RAY DIFFRACTION 5 A 60 A 83 X-RAY DIFFRACTION 6 A 84 A 95 X-RAY DIFFRACTION 7 A 96 A 111 X-RAY DIFFRACTION 8 B 0 B 12 X-RAY DIFFRACTION 9 B 13 B 28 X-RAY DIFFRACTION 10 B 29 B 34 X-RAY DIFFRACTION 11 B 35 B 45 X-RAY DIFFRACTION 12 B 46 B 59 X-RAY DIFFRACTION 13 B 60 B 83 X-RAY DIFFRACTION 14 B 84 B 95 X-RAY DIFFRACTION 15 B 96 B 115 X-RAY DIFFRACTION 16 1 0.588 2 0.412 author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 3830 -34 12890 4260 -39 12900 A MSE 1 SELENOMETHIONINE A MSE 4 MET A MSE 10 SELENOMETHIONINE A MSE 13 MET A MSE 21 SELENOMETHIONINE A MSE 24 MET A MSE 56 SELENOMETHIONINE A MSE 59 MET B MSE 1 SELENOMETHIONINE B MSE 4 MET B MSE 10 SELENOMETHIONINE B MSE 13 MET B MSE 21 SELENOMETHIONINE B MSE 24 MET B MSE 56 SELENOMETHIONINE B MSE 59 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 6_665 -x+1,-y+1,z crystal symmetry operation 55.7830000000 55.7830000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 6_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 31 A N ALA 34 A O TYR 80 A O TYR 83 A O TYR 79 A O TYR 82 A N GLU 68 A N GLU 71 B N ALA 31 B N ALA 34 B O TYR 80 B O TYR 83 B O ARG 77 B O ARG 80 B N ASP 70 B N ASP 73 1 B HOH 206 E HOH 1 A CG TYR 3 A CG TYR 6 1 Y 1 A CD1 TYR 3 A CD1 TYR 6 1 Y 1 A CD2 TYR 3 A CD2 TYR 6 1 Y 1 A CE1 TYR 3 A CE1 TYR 6 1 Y 1 A CE2 TYR 3 A CE2 TYR 6 1 Y 1 A CZ TYR 3 A CZ TYR 6 1 Y 1 A OH TYR 3 A OH TYR 6 1 Y 1 A SER -2 A SER 1 1 Y 1 A ASN -1 A ASN 2 1 Y 1 A GLY 112 A GLY 115 1 Y 1 A GLU 113 A GLU 116 1 Y 1 A ASP 114 A ASP 117 1 Y 1 A ARG 115 A ARG 118 1 Y 1 A GLU 116 A GLU 119 1 Y 1 A HIS 117 A HIS 120 1 Y 1 A ALA 118 A ALA 121 1 Y 1 A GLU 119 A GLU 122 1 Y 1 A ARG 120 A ARG 123 1 Y 1 B SER -2 B SER 1 1 Y 1 B ASN -1 B ASN 2 1 Y 1 B GLU 48 B GLU 51 1 Y 1 B ALA 49 B ALA 52 1 Y 1 B ASN 50 B ASN 53 1 Y 1 B SER 74 B SER 77 1 Y 1 B GLU 116 B GLU 119 1 Y 1 B HIS 117 B HIS 120 1 Y 1 B ALA 118 B ALA 121 1 Y 1 B GLU 119 B GLU 122 1 Y 1 B ARG 120 B ARG 123 1 Y 1 A A O O GLY HOH 17 301 2.08 1 A A O OG1 ARG THR 15 18 2.15 1 A A CG CD2 HIS HIS 98 98 0.061 0.009 1.354 1.415 N 1 A B OH OD2 TYR ASP 79 102 2.14 1_555 6_565 1 A THR 110 -62.81 83.89 1 B ASN 71 -60.41 -74.58 1 B GLU 109 -111.52 67.50 1 B GLU 113 -37.27 139.22 174.830 44.9808 6.080 15.5100 0.0000 0.0000 15.5100 0.0000 -31.0200 0.9490 0.9290 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : WITH TLS ADDED 0.2353 0.1810 0.1833 2.1000 50.000 532 11854 4.5000 99.7700 1.000 0.500 13.5430 0.1590 RANDOM 1 THROUGHOUT 0.000 MAD 0.0430 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 2.1000 50.000 22 1792 3 0 1767 0.013 0.020 1862 1.667 1.990 2519 6.941 5.000 232 37.889 22.588 85 17.921 15.000 342 19.055 15.000 22 0.104 0.200 281 0.007 0.021 1398 5.435 3.000 1862 29.428 5.000 6 28.290 5.000 1846 0.2690 0.1840 2.1500 52 839 891 893 20 98.3400 2.100 50.000 4EJO 11881 11880 -3.000 0.126 1 33.900 9.600 100.000 0.542 2.100 2.120 4.000 1 8.600 100.000 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.6.0117 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection SBC-Collect data reduction HKL-3000 data scaling HKL-3000 phasing HKL-3000 phasing MLPHARE phasing DM phasing SHELXDE phasing RESOLVE model building ARP/wARP Transcriptional regulator, PadR-like family Crystal structure of padr family transcriptional regulator from Eggerthella lenta DSM 2243 1 N N 1 N N 2 N N 3 N N 3 N N unit A makes dimer with operator (x,y,z) (1-x,1-y,z) unit B makes dimer with operator (x,y,z) (-x,-y,z) A MSE 1 A MSE 4 HELX_P A LEU 27 A LEU 30 1 1 27 A GLY 33 A GLY 36 HELX_P A HIS 43 A HIS 46 1 2 11 A GLU 48 A GLU 51 HELX_P A GLN 62 A GLN 65 1 3 15 A THR 83 A THR 86 HELX_P A GLU 109 A GLU 112 1 4 27 B MSE 1 B MSE 4 HELX_P B LEU 27 B LEU 30 1 5 27 B GLY 33 B GLY 36 HELX_P B HIS 43 B HIS 46 1 6 11 B LEU 52 B LEU 55 HELX_P B GLN 62 B GLN 65 1 7 11 B THR 83 B THR 86 HELX_P B GLU 109 B GLU 112 1 8 27 covale 1.330 A ALA 0 A C ALA 3 1_555 A MSE 1 A N MSE 4 1_555 covale 1.330 A MSE 1 A C MSE 4 1_555 A ALA 2 A N ALA 5 1_555 covale 1.349 A SER 9 A C SER 12 1_555 A MSE 10 A N MSE 13 1_555 covale 1.329 A MSE 10 A C MSE 13 1_555 A VAL 11 A N VAL 14 1_555 covale 1.342 A VAL 20 A C VAL 23 1_555 A MSE 21 A N MSE 24 1_555 covale 1.336 A MSE 21 A C MSE 24 1_555 A LEU 22 A N LEU 25 1_555 covale 1.333 A LEU 55 A C LEU 58 1_555 A MSE 56 A N MSE 59 1_555 covale 1.332 A MSE 56 A C MSE 59 1_555 A ARG 57 A N ARG 60 1_555 covale 1.333 B ALA 0 B C ALA 3 1_555 B MSE 1 B N MSE 4 1_555 covale 1.333 B MSE 1 B C MSE 4 1_555 B ALA 2 B N ALA 5 1_555 covale 1.326 B SER 9 B C SER 12 1_555 B MSE 10 B N MSE 13 1_555 covale 1.327 B MSE 10 B C MSE 13 1_555 B VAL 11 B N VAL 14 1_555 covale 1.273 B VAL 20 B C VAL 23 1_555 B MSE 21 B N MSE 24 1_555 covale 1.323 B MSE 21 B C MSE 24 1_555 B LEU 22 B N LEU 25 1_555 covale 1.330 B LEU 55 B C LEU 58 1_555 B MSE 56 B N MSE 59 1_555 covale 1.331 B MSE 56 B C MSE 59 1_555 B ARG 57 B N ARG 60 1_555 TRANSCRIPTION REGULATOR PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION REGULATOR C8WHB0_EGGLE UNP 1 1 C8WHB0 MAYDDIVSSMVLELRRGTLVMLVLSQLREPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYY RTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER 1 120 4EJO 1 120 C8WHB0 A 1 4 123 1 120 4EJO 1 120 C8WHB0 B 1 4 123 1 EXPRESSION TAG SER -2 4EJO A C8WHB0 UNP 1 1 EXPRESSION TAG ASN -1 4EJO A C8WHB0 UNP 2 1 EXPRESSION TAG ALA 0 4EJO A C8WHB0 UNP 3 2 EXPRESSION TAG SER -2 4EJO B C8WHB0 UNP 1 2 EXPRESSION TAG ASN -1 4EJO B C8WHB0 UNP 2 2 EXPRESSION TAG ALA 0 4EJO B C8WHB0 UNP 3 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A ALA 31 A ALA 34 A TYR 32 A TYR 35 A PRO 76 A PRO 79 A THR 82 A THR 85 A LEU 65 A LEU 68 A ASN 71 A ASN 74 B ALA 31 B ALA 34 B TYR 32 B TYR 35 B ARG 77 B ARG 80 B THR 82 B THR 85 B LEU 65 B LEU 68 B ASP 70 B ASP 73 BINDING SITE FOR RESIDUE EOH A 201 Software 5 A TYR 32 A TYR 35 5 1_555 A GLY 33 A GLY 36 5 1_555 A TYR 34 A TYR 37 5 1_555 A TYR 53 A TYR 56 5 1_555 A LYS 78 A LYS 81 5 1_555 80 I 41