0.017927
0.000000
0.000000
0.000000
0.017927
0.000000
0.000000
0.000000
0.007551
0.000000
0.000000
0.000000
Chang, C.
Li, H.
Bearden, J.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
55.783
55.783
132.425
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O
46.068
ETHANOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
TO BE PUBLISHED
0353
Crystal structure of padr family transcriptional regulator from Eggerthella lenta DSM 2243
100.0
1
CCD
2010-10-11
ADSC QUANTUM 315r
SI(111)DOUBLE CRYSTAL
MAD
M
x-ray
1
0.97948
1.0
0.97959
1.0
19-ID
APS
0.97948, 0.97959
SYNCHROTRON
APS BEAMLINE 19-ID
14110.361
Transcriptional regulator, PadR-like family
2
man
polymer
46.068
ETHANOL
1
syn
non-polymer
18.015
water
22
nat
water
no
yes
SNA(MSE)AYDDIVSS(MSE)VLELRRGTLV(MSE)LVLSQLREPAYGYALVKSLADHGIPIEANTLYPL(MSE)RRLES
QGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER
SNAMAYDDIVSSMVLELRRGTLVMLVLSQLREPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPR
KYYRTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER
A,B
MCSG-APC100099
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255
sample
Elen_1533
479437
Eggerthella lenta
469008
Escherichia coli
BL21(DE3) MAGIC
1
1.830
32.610
VAPOR DIFFUSION, SITTING DROP
4.2
0.1M PHOSPHATE-CITRATE PH 4.2, 40% ETHANOL, 5% PEG 1000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE, temperature 277 K
277
Midwest Center for Structural Genomics
MCSG
PSI:Biology
repository
Initial release
1
0
2012-04-25
2012-04-25
SPRSDE
Y
RCSB
Y
RCSB
2012-04-06
REL
REL
EOH
ETHANOL
HOH
water
EOH
1
2
EOH
EOH
201
A
HOH
3
3
HOH
HOH
301
A
HOH
8
3
HOH
HOH
302
A
HOH
11
3
HOH
HOH
303
A
HOH
20
3
HOH
HOH
304
A
HOH
22
3
HOH
HOH
305
A
HOH
24
3
HOH
HOH
306
A
HOH
1
3
HOH
HOH
201
B
HOH
2
3
HOH
HOH
202
B
HOH
5
3
HOH
HOH
203
B
HOH
6
3
HOH
HOH
204
B
HOH
7
3
HOH
HOH
205
B
HOH
9
3
HOH
HOH
206
B
HOH
10
3
HOH
HOH
207
B
HOH
12
3
HOH
HOH
208
B
HOH
13
3
HOH
HOH
209
B
HOH
15
3
HOH
HOH
210
B
HOH
16
3
HOH
HOH
211
B
HOH
17
3
HOH
HOH
212
B
HOH
18
3
HOH
HOH
213
B
HOH
19
3
HOH
HOH
214
B
HOH
21
3
HOH
HOH
215
B
HOH
23
3
HOH
HOH
216
B
n
1
-2
A
n
2
-1
A
ALA
0
n
3
ALA
0
A
MSE
1
n
4
MSE
1
A
ALA
2
n
5
ALA
2
A
TYR
3
n
6
TYR
3
A
ASP
4
n
7
ASP
4
A
ASP
5
n
8
ASP
5
A
ILE
6
n
9
ILE
6
A
VAL
7
n
10
VAL
7
A
SER
8
n
11
SER
8
A
SER
9
n
12
SER
9
A
MSE
10
n
13
MSE
10
A
VAL
11
n
14
VAL
11
A
LEU
12
n
15
LEU
12
A
GLU
13
n
16
GLU
13
A
LEU
14
n
17
LEU
14
A
ARG
15
n
18
ARG
15
A
ARG
16
n
19
ARG
16
A
GLY
17
n
20
GLY
17
A
THR
18
n
21
THR
18
A
LEU
19
n
22
LEU
19
A
VAL
20
n
23
VAL
20
A
MSE
21
n
24
MSE
21
A
LEU
22
n
25
LEU
22
A
VAL
23
n
26
VAL
23
A
LEU
24
n
27
LEU
24
A
SER
25
n
28
SER
25
A
GLN
26
n
29
GLN
26
A
LEU
27
n
30
LEU
27
A
ARG
28
n
31
ARG
28
A
GLU
29
n
32
GLU
29
A
PRO
30
n
33
PRO
30
A
ALA
31
n
34
ALA
31
A
TYR
32
n
35
TYR
32
A
GLY
33
n
36
GLY
33
A
TYR
34
n
37
TYR
34
A
ALA
35
n
38
ALA
35
A
LEU
36
n
39
LEU
36
A
VAL
37
n
40
VAL
37
A
LYS
38
n
41
LYS
38
A
SER
39
n
42
SER
39
A
LEU
40
n
43
LEU
40
A
ALA
41
n
44
ALA
41
A
ASP
42
n
45
ASP
42
A
HIS
43
n
46
HIS
43
A
GLY
44
n
47
GLY
44
A
ILE
45
n
48
ILE
45
A
PRO
46
n
49
PRO
46
A
ILE
47
n
50
ILE
47
A
GLU
48
n
51
GLU
48
A
ALA
49
n
52
ALA
49
A
ASN
50
n
53
ASN
50
A
THR
51
n
54
THR
51
A
LEU
52
n
55
LEU
52
A
TYR
53
n
56
TYR
53
A
PRO
54
n
57
PRO
54
A
LEU
55
n
58
LEU
55
A
MSE
56
n
59
MSE
56
A
ARG
57
n
60
ARG
57
A
ARG
58
n
61
ARG
58
A
LEU
59
n
62
LEU
59
A
GLU
60
n
63
GLU
60
A
SER
61
n
64
SER
61
A
GLN
62
n
65
GLN
62
A
GLY
63
n
66
GLY
63
A
LEU
64
n
67
LEU
64
A
LEU
65
n
68
LEU
65
A
ALA
66
n
69
ALA
66
A
SER
67
n
70
SER
67
A
GLU
68
n
71
GLU
68
A
TRP
69
n
72
TRP
69
A
ASP
70
n
73
ASP
70
A
ASN
71
n
74
ASN
71
A
GLY
72
n
75
GLY
72
A
GLY
73
n
76
GLY
73
A
SER
74
n
77
SER
74
A
LYS
75
n
78
LYS
75
A
PRO
76
n
79
PRO
76
A
ARG
77
n
80
ARG
77
A
LYS
78
n
81
LYS
78
A
TYR
79
n
82
TYR
79
A
TYR
80
n
83
TYR
80
A
ARG
81
n
84
ARG
81
A
THR
82
n
85
THR
82
A
THR
83
n
86
THR
83
A
ASP
84
n
87
ASP
84
A
GLU
85
n
88
GLU
85
A
GLY
86
n
89
GLY
86
A
LEU
87
n
90
LEU
87
A
ARG
88
n
91
ARG
88
A
VAL
89
n
92
VAL
89
A
LEU
90
n
93
LEU
90
A
ARG
91
n
94
ARG
91
A
GLU
92
n
95
GLU
92
A
VAL
93
n
96
VAL
93
A
GLU
94
n
97
GLU
94
A
ALA
95
n
98
ALA
95
A
GLN
96
n
99
GLN
96
A
TRP
97
n
100
TRP
97
A
HIS
98
n
101
HIS
98
A
VAL
99
n
102
VAL
99
A
LEU
100
n
103
LEU
100
A
CYS
101
n
104
CYS
101
A
ASP
102
n
105
ASP
102
A
GLY
103
n
106
GLY
103
A
VAL
104
n
107
VAL
104
A
GLY
105
n
108
GLY
105
A
LYS
106
n
109
LYS
106
A
LEU
107
n
110
LEU
107
A
LEU
108
n
111
LEU
108
A
GLU
109
n
112
GLU
109
A
THR
110
n
113
THR
110
A
ASN
111
n
114
ASN
111
A
n
115
112
A
n
116
113
A
n
117
114
A
n
118
115
A
n
119
116
A
n
120
117
A
n
121
118
A
n
122
119
A
n
123
120
A
n
1
-2
B
n
2
-1
B
ALA
0
n
3
ALA
0
B
MSE
1
n
4
MSE
1
B
ALA
2
n
5
ALA
2
B
TYR
3
n
6
TYR
3
B
ASP
4
n
7
ASP
4
B
ASP
5
n
8
ASP
5
B
ILE
6
n
9
ILE
6
B
VAL
7
n
10
VAL
7
B
SER
8
n
11
SER
8
B
SER
9
n
12
SER
9
B
MSE
10
n
13
MSE
10
B
VAL
11
n
14
VAL
11
B
LEU
12
n
15
LEU
12
B
GLU
13
n
16
GLU
13
B
LEU
14
n
17
LEU
14
B
ARG
15
n
18
ARG
15
B
ARG
16
n
19
ARG
16
B
GLY
17
n
20
GLY
17
B
THR
18
n
21
THR
18
B
LEU
19
n
22
LEU
19
B
VAL
20
n
23
VAL
20
B
MSE
21
n
24
MSE
21
B
LEU
22
n
25
LEU
22
B
VAL
23
n
26
VAL
23
B
LEU
24
n
27
LEU
24
B
SER
25
n
28
SER
25
B
GLN
26
n
29
GLN
26
B
LEU
27
n
30
LEU
27
B
ARG
28
n
31
ARG
28
B
GLU
29
n
32
GLU
29
B
PRO
30
n
33
PRO
30
B
ALA
31
n
34
ALA
31
B
TYR
32
n
35
TYR
32
B
GLY
33
n
36
GLY
33
B
TYR
34
n
37
TYR
34
B
ALA
35
n
38
ALA
35
B
LEU
36
n
39
LEU
36
B
VAL
37
n
40
VAL
37
B
LYS
38
n
41
LYS
38
B
SER
39
n
42
SER
39
B
LEU
40
n
43
LEU
40
B
ALA
41
n
44
ALA
41
B
ASP
42
n
45
ASP
42
B
HIS
43
n
46
HIS
43
B
GLY
44
n
47
GLY
44
B
ILE
45
n
48
ILE
45
B
PRO
46
n
49
PRO
46
B
ILE
47
n
50
ILE
47
B
n
51
48
B
n
52
49
B
n
53
50
B
THR
51
n
54
THR
51
B
LEU
52
n
55
LEU
52
B
TYR
53
n
56
TYR
53
B
PRO
54
n
57
PRO
54
B
LEU
55
n
58
LEU
55
B
MSE
56
n
59
MSE
56
B
ARG
57
n
60
ARG
57
B
ARG
58
n
61
ARG
58
B
LEU
59
n
62
LEU
59
B
GLU
60
n
63
GLU
60
B
SER
61
n
64
SER
61
B
GLN
62
n
65
GLN
62
B
GLY
63
n
66
GLY
63
B
LEU
64
n
67
LEU
64
B
LEU
65
n
68
LEU
65
B
ALA
66
n
69
ALA
66
B
SER
67
n
70
SER
67
B
GLU
68
n
71
GLU
68
B
TRP
69
n
72
TRP
69
B
ASP
70
n
73
ASP
70
B
ASN
71
n
74
ASN
71
B
GLY
72
n
75
GLY
72
B
GLY
73
n
76
GLY
73
B
n
77
74
B
LYS
75
n
78
LYS
75
B
PRO
76
n
79
PRO
76
B
ARG
77
n
80
ARG
77
B
LYS
78
n
81
LYS
78
B
TYR
79
n
82
TYR
79
B
TYR
80
n
83
TYR
80
B
ARG
81
n
84
ARG
81
B
THR
82
n
85
THR
82
B
THR
83
n
86
THR
83
B
ASP
84
n
87
ASP
84
B
GLU
85
n
88
GLU
85
B
GLY
86
n
89
GLY
86
B
LEU
87
n
90
LEU
87
B
ARG
88
n
91
ARG
88
B
VAL
89
n
92
VAL
89
B
LEU
90
n
93
LEU
90
B
ARG
91
n
94
ARG
91
B
GLU
92
n
95
GLU
92
B
VAL
93
n
96
VAL
93
B
GLU
94
n
97
GLU
94
B
ALA
95
n
98
ALA
95
B
GLN
96
n
99
GLN
96
B
TRP
97
n
100
TRP
97
B
HIS
98
n
101
HIS
98
B
VAL
99
n
102
VAL
99
B
LEU
100
n
103
LEU
100
B
CYS
101
n
104
CYS
101
B
ASP
102
n
105
ASP
102
B
GLY
103
n
106
GLY
103
B
VAL
104
n
107
VAL
104
B
GLY
105
n
108
GLY
105
B
LYS
106
n
109
LYS
106
B
LEU
107
n
110
LEU
107
B
LEU
108
n
111
LEU
108
B
GLU
109
n
112
GLU
109
B
THR
110
n
113
THR
110
B
ASN
111
n
114
ASN
111
B
GLY
112
n
115
GLY
112
B
GLU
113
n
116
GLU
113
B
ASP
114
n
117
ASP
114
B
ARG
115
n
118
ARG
115
B
n
119
116
B
n
120
117
B
n
121
118
B
n
122
119
B
n
123
120
B
0.1036
1.3764
0.1575
26.8957
-5.9769
8.4597
0.0371
0.0316
0.0701
0.2360
0.3887
1.2135
0.3805
-0.2922
-0.4258
0.1531
0.0176
0.0234
0.2593
0.0804
0.3183
refined
19.7260
14.9470
9.9010
X-RAY DIFFRACTION
1.8825
-1.9299
-1.0358
4.9239
0.7224
0.6162
-0.0107
-0.0241
-0.0211
-0.1848
0.0411
0.1674
0.0608
0.0027
-0.0304
0.1909
-0.0053
-0.0576
0.1893
-0.0126
0.3055
refined
21.5170
35.6110
5.7370
X-RAY DIFFRACTION
11.6429
-4.7070
8.4849
1.9074
-3.4322
6.1879
-0.3679
-0.2534
0.2208
0.1483
0.1219
-0.1031
-0.3024
-0.1813
0.2460
0.2226
0.0366
0.0048
0.1953
-0.0471
0.4618
refined
10.3370
46.0310
7.7170
X-RAY DIFFRACTION
16.6783
14.5975
12.6634
13.6907
12.8182
12.9071
0.5655
-0.0861
-0.4577
0.3822
-0.1909
-0.4226
0.2045
-0.2718
-0.3746
0.1407
0.1153
-0.1490
0.1163
-0.1355
0.4584
refined
11.0650
35.4210
4.6250
X-RAY DIFFRACTION
4.1164
2.5886
-1.3985
5.5687
-0.7174
0.4843
-0.1806
-0.4418
-0.2434
-0.3043
0.0575
0.1539
0.0616
0.1462
0.1231
0.2061
0.0449
-0.0254
0.2282
0.0213
0.3193
refined
17.6490
37.7100
15.3140
X-RAY DIFFRACTION
5.5255
-0.1955
2.6152
0.8955
0.0702
1.2719
0.0246
-0.5635
0.1817
0.0892
-0.1182
0.0881
0.0411
-0.2657
0.0935
0.2030
0.0033
-0.0060
0.2341
-0.0457
0.3217
refined
14.6080
50.3050
13.2290
X-RAY DIFFRACTION
0.2941
-1.3596
-0.3579
7.8230
2.5926
1.1736
-0.0126
0.0101
0.0668
0.0208
0.1530
-0.1179
-0.0335
-0.0475
-0.1403
0.1588
0.0101
-0.0003
0.2790
0.0810
0.3507
refined
29.3930
44.8310
1.8030
X-RAY DIFFRACTION
3.4566
-7.2655
-2.6939
19.7981
4.4248
2.5235
-0.2599
-0.2160
-0.1314
0.0229
0.1279
0.1879
0.1983
0.2855
0.1320
0.2403
-0.0102
0.0225
0.1744
0.0224
0.2732
refined
34.0060
26.1050
-3.5750
X-RAY DIFFRACTION
2.7235
1.5614
-1.0205
16.5680
7.7037
5.2088
0.0631
0.0253
-0.4232
0.3994
-0.2387
-0.3971
0.2929
-0.3055
0.1757
0.1716
0.0067
0.0499
0.2364
-0.0412
0.3454
refined
7.6170
-13.8130
-7.2880
X-RAY DIFFRACTION
1.6882
3.1803
-0.2124
7.0947
1.8890
4.8675
-0.3268
-0.1479
0.1706
-0.5899
-0.3191
0.5972
0.3836
-0.1644
0.6459
0.2780
0.0260
-0.0237
0.2058
0.0084
0.4322
refined
6.2570
7.5980
-3.3000
X-RAY DIFFRACTION
23.7477
-1.5017
9.1805
0.0960
-0.5818
3.5507
-0.1267
0.5956
-0.0538
0.0220
0.0395
-0.0121
-0.0922
0.2379
0.0872
0.2247
-0.0698
0.0003
0.1394
0.0652
0.4241
refined
17.5990
18.0870
-5.2420
X-RAY DIFFRACTION
12.1787
-2.1947
1.8920
17.5995
-22.9482
30.0033
-0.0967
-0.8000
-0.1279
0.1192
0.4087
0.2829
-0.1371
-0.4325
-0.3120
0.1262
-0.0190
0.0197
0.1731
0.0003
0.3881
refined
16.7290
7.6320
-2.1380
X-RAY DIFFRACTION
4.4744
-17.7931
-0.9860
70.7913
3.9213
0.2173
-0.0759
0.0911
-0.3510
0.7808
-0.1350
1.2918
0.0423
-0.0153
0.2109
0.5704
-0.6714
0.1910
0.8180
-0.2911
0.3450
refined
9.1910
10.6580
-12.5210
X-RAY DIFFRACTION
1.9469
-0.4945
-1.4100
2.4418
-1.7932
3.0197
0.0820
0.1095
0.0875
-0.1203
-0.0018
-0.0006
0.0256
-0.1075
-0.0801
0.1717
-0.0172
-0.0214
0.2112
0.0187
0.3068
refined
13.2690
22.4560
-10.8550
X-RAY DIFFRACTION
5.2432
-0.9421
-2.9476
9.3223
-4.3598
4.2702
0.1171
-0.0410
-0.2680
0.1215
-0.2683
0.0862
-0.1440
0.1852
0.1512
0.1413
0.0007
0.0138
0.2317
0.0826
0.3837
refined
-1.4490
16.8640
0.7430
X-RAY DIFFRACTION
3.7298
-0.2526
-1.5030
14.6798
-1.4950
0.7809
-0.0893
0.3386
0.0670
0.7579
0.1471
0.0608
-0.0409
-0.1605
-0.0578
0.1489
-0.0205
-0.0166
0.2091
0.0281
0.2957
refined
-6.4920
-2.7940
6.3930
X-RAY DIFFRACTION
A
0
A
12
X-RAY DIFFRACTION
1
A
13
A
28
X-RAY DIFFRACTION
2
A
29
A
34
X-RAY DIFFRACTION
3
A
35
A
45
X-RAY DIFFRACTION
4
A
46
A
59
X-RAY DIFFRACTION
5
A
60
A
83
X-RAY DIFFRACTION
6
A
84
A
95
X-RAY DIFFRACTION
7
A
96
A
111
X-RAY DIFFRACTION
8
B
0
B
12
X-RAY DIFFRACTION
9
B
13
B
28
X-RAY DIFFRACTION
10
B
29
B
34
X-RAY DIFFRACTION
11
B
35
B
45
X-RAY DIFFRACTION
12
B
46
B
59
X-RAY DIFFRACTION
13
B
60
B
83
X-RAY DIFFRACTION
14
B
84
B
95
X-RAY DIFFRACTION
15
B
96
B
115
X-RAY DIFFRACTION
16
1
0.588
2
0.412
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
3830
-34
12890
4260
-39
12900
A
MSE
1
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
10
SELENOMETHIONINE
A
MSE
13
MET
A
MSE
21
SELENOMETHIONINE
A
MSE
24
MET
A
MSE
56
SELENOMETHIONINE
A
MSE
59
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
4
MET
B
MSE
10
SELENOMETHIONINE
B
MSE
13
MET
B
MSE
21
SELENOMETHIONINE
B
MSE
24
MET
B
MSE
56
SELENOMETHIONINE
B
MSE
59
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_665
-x+1,-y+1,z
crystal symmetry operation
55.7830000000
55.7830000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
31
A
N
ALA
34
A
O
TYR
80
A
O
TYR
83
A
O
TYR
79
A
O
TYR
82
A
N
GLU
68
A
N
GLU
71
B
N
ALA
31
B
N
ALA
34
B
O
TYR
80
B
O
TYR
83
B
O
ARG
77
B
O
ARG
80
B
N
ASP
70
B
N
ASP
73
1
B
HOH
206
E
HOH
1
A
CG
TYR
3
A
CG
TYR
6
1
Y
1
A
CD1
TYR
3
A
CD1
TYR
6
1
Y
1
A
CD2
TYR
3
A
CD2
TYR
6
1
Y
1
A
CE1
TYR
3
A
CE1
TYR
6
1
Y
1
A
CE2
TYR
3
A
CE2
TYR
6
1
Y
1
A
CZ
TYR
3
A
CZ
TYR
6
1
Y
1
A
OH
TYR
3
A
OH
TYR
6
1
Y
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
GLY
112
A
GLY
115
1
Y
1
A
GLU
113
A
GLU
116
1
Y
1
A
ASP
114
A
ASP
117
1
Y
1
A
ARG
115
A
ARG
118
1
Y
1
A
GLU
116
A
GLU
119
1
Y
1
A
HIS
117
A
HIS
120
1
Y
1
A
ALA
118
A
ALA
121
1
Y
1
A
GLU
119
A
GLU
122
1
Y
1
A
ARG
120
A
ARG
123
1
Y
1
B
SER
-2
B
SER
1
1
Y
1
B
ASN
-1
B
ASN
2
1
Y
1
B
GLU
48
B
GLU
51
1
Y
1
B
ALA
49
B
ALA
52
1
Y
1
B
ASN
50
B
ASN
53
1
Y
1
B
SER
74
B
SER
77
1
Y
1
B
GLU
116
B
GLU
119
1
Y
1
B
HIS
117
B
HIS
120
1
Y
1
B
ALA
118
B
ALA
121
1
Y
1
B
GLU
119
B
GLU
122
1
Y
1
B
ARG
120
B
ARG
123
1
Y
1
A
A
O
O
GLY
HOH
17
301
2.08
1
A
A
O
OG1
ARG
THR
15
18
2.15
1
A
A
CG
CD2
HIS
HIS
98
98
0.061
0.009
1.354
1.415
N
1
A
B
OH
OD2
TYR
ASP
79
102
2.14
1_555
6_565
1
A
THR
110
-62.81
83.89
1
B
ASN
71
-60.41
-74.58
1
B
GLU
109
-111.52
67.50
1
B
GLU
113
-37.27
139.22
174.830
44.9808
6.080
15.5100
0.0000
0.0000
15.5100
0.0000
-31.0200
0.9490
0.9290
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : WITH TLS ADDED
0.2353
0.1810
0.1833
2.1000
50.000
532
11854
4.5000
99.7700
1.000
0.500
13.5430
0.1590
RANDOM
1
THROUGHOUT
0.000
MAD
0.0430
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.1000
50.000
22
1792
3
0
1767
0.013
0.020
1862
1.667
1.990
2519
6.941
5.000
232
37.889
22.588
85
17.921
15.000
342
19.055
15.000
22
0.104
0.200
281
0.007
0.021
1398
5.435
3.000
1862
29.428
5.000
6
28.290
5.000
1846
0.2690
0.1840
2.1500
52
839
891
893
20
98.3400
2.100
50.000
4EJO
11881
11880
-3.000
0.126
1
33.900
9.600
100.000
0.542
2.100
2.120
4.000
1
8.600
100.000
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0117
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
SBC-Collect
data reduction
HKL-3000
data scaling
HKL-3000
phasing
HKL-3000
phasing
MLPHARE
phasing
DM
phasing
SHELXDE
phasing
RESOLVE
model building
ARP/wARP
Transcriptional regulator, PadR-like family
Crystal structure of padr family transcriptional regulator from Eggerthella lenta DSM 2243
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
unit A makes dimer with operator (x,y,z) (1-x,1-y,z) unit B makes dimer with operator (x,y,z) (-x,-y,z)
A
MSE
1
A
MSE
4
HELX_P
A
LEU
27
A
LEU
30
1
1
27
A
GLY
33
A
GLY
36
HELX_P
A
HIS
43
A
HIS
46
1
2
11
A
GLU
48
A
GLU
51
HELX_P
A
GLN
62
A
GLN
65
1
3
15
A
THR
83
A
THR
86
HELX_P
A
GLU
109
A
GLU
112
1
4
27
B
MSE
1
B
MSE
4
HELX_P
B
LEU
27
B
LEU
30
1
5
27
B
GLY
33
B
GLY
36
HELX_P
B
HIS
43
B
HIS
46
1
6
11
B
LEU
52
B
LEU
55
HELX_P
B
GLN
62
B
GLN
65
1
7
11
B
THR
83
B
THR
86
HELX_P
B
GLU
109
B
GLU
112
1
8
27
covale
1.330
A
ALA
0
A
C
ALA
3
1_555
A
MSE
1
A
N
MSE
4
1_555
covale
1.330
A
MSE
1
A
C
MSE
4
1_555
A
ALA
2
A
N
ALA
5
1_555
covale
1.349
A
SER
9
A
C
SER
12
1_555
A
MSE
10
A
N
MSE
13
1_555
covale
1.329
A
MSE
10
A
C
MSE
13
1_555
A
VAL
11
A
N
VAL
14
1_555
covale
1.342
A
VAL
20
A
C
VAL
23
1_555
A
MSE
21
A
N
MSE
24
1_555
covale
1.336
A
MSE
21
A
C
MSE
24
1_555
A
LEU
22
A
N
LEU
25
1_555
covale
1.333
A
LEU
55
A
C
LEU
58
1_555
A
MSE
56
A
N
MSE
59
1_555
covale
1.332
A
MSE
56
A
C
MSE
59
1_555
A
ARG
57
A
N
ARG
60
1_555
covale
1.333
B
ALA
0
B
C
ALA
3
1_555
B
MSE
1
B
N
MSE
4
1_555
covale
1.333
B
MSE
1
B
C
MSE
4
1_555
B
ALA
2
B
N
ALA
5
1_555
covale
1.326
B
SER
9
B
C
SER
12
1_555
B
MSE
10
B
N
MSE
13
1_555
covale
1.327
B
MSE
10
B
C
MSE
13
1_555
B
VAL
11
B
N
VAL
14
1_555
covale
1.273
B
VAL
20
B
C
VAL
23
1_555
B
MSE
21
B
N
MSE
24
1_555
covale
1.323
B
MSE
21
B
C
MSE
24
1_555
B
LEU
22
B
N
LEU
25
1_555
covale
1.330
B
LEU
55
B
C
LEU
58
1_555
B
MSE
56
B
N
MSE
59
1_555
covale
1.331
B
MSE
56
B
C
MSE
59
1_555
B
ARG
57
B
N
ARG
60
1_555
TRANSCRIPTION REGULATOR
PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION REGULATOR
C8WHB0_EGGLE
UNP
1
1
C8WHB0
MAYDDIVSSMVLELRRGTLVMLVLSQLREPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYY
RTTDEGLRVLREVEAQWHVLCDGVGKLLETNGEDREHAER
1
120
4EJO
1
120
C8WHB0
A
1
4
123
1
120
4EJO
1
120
C8WHB0
B
1
4
123
1
EXPRESSION TAG
SER
-2
4EJO
A
C8WHB0
UNP
1
1
EXPRESSION TAG
ASN
-1
4EJO
A
C8WHB0
UNP
2
1
EXPRESSION TAG
ALA
0
4EJO
A
C8WHB0
UNP
3
2
EXPRESSION TAG
SER
-2
4EJO
B
C8WHB0
UNP
1
2
EXPRESSION TAG
ASN
-1
4EJO
B
C8WHB0
UNP
2
2
EXPRESSION TAG
ALA
0
4EJO
B
C8WHB0
UNP
3
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
31
A
ALA
34
A
TYR
32
A
TYR
35
A
PRO
76
A
PRO
79
A
THR
82
A
THR
85
A
LEU
65
A
LEU
68
A
ASN
71
A
ASN
74
B
ALA
31
B
ALA
34
B
TYR
32
B
TYR
35
B
ARG
77
B
ARG
80
B
THR
82
B
THR
85
B
LEU
65
B
LEU
68
B
ASP
70
B
ASP
73
BINDING SITE FOR RESIDUE EOH A 201
Software
5
A
TYR
32
A
TYR
35
5
1_555
A
GLY
33
A
GLY
36
5
1_555
A
TYR
34
A
TYR
37
5
1_555
A
TYR
53
A
TYR
56
5
1_555
A
LYS
78
A
LYS
81
5
1_555
80
I 41