0.027571
0.000000
0.004911
0.000000
0.018335
0.000000
0.000000
0.000000
0.023951
0.00000
0.00000
0.00000
Baniecki, M.L.
McGrath, W.J.
Mangel, W.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
100.10
90.00
36.270
54.540
42.410
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O4 S
153.157
n
3-SULFINOALANINE
S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
S
N
78
N
C
N
79
N
O
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
R
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
S
N
96
N
O
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
N
N
105
S
C
N
106
N
C
N
107
N
O
N
108
N
C
N
109
N
C
N
110
N
C
N
111
N
O
N
112
N
N
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
Y
158
N
C
Y
159
N
N
Y
160
N
C
Y
161
N
C
Y
162
N
N
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
S
C
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
N
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
S
N
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
NA
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
R
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
N
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
N
376
N
O
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
Y
155
N
sing
Y
156
N
doub
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
Y
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
Y
263
N
doub
Y
264
N
sing
Y
265
N
sing
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
doub
N
270
N
sing
Y
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
Y
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
288
2081
2091
10.1074/jbc.M112.407429
23043139
Regulation of a Viral Proteinase by a Peptide and DNA in One-dimensional Space: III. ATOMIC RESOLUTION STRUCTURE OF THE NASCENT FORM OF THE ADENOVIRUS PROTEINASE.
2013
US
J.Biol.Chem.
JBCHA3
0071
1083-351X
10.1074/jbc.M112.377150
23043136
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space. I. binding to DNA and to hexon of the precursor to protein VI, pVI, of human adenovirus.
2012
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
58
1462
1464
10.1074/jbc.M112.407312
23043137
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space. II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction.
2012
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
15
1778
1783
10.1074/jbc.M112.407460
23043138
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space. IV. viral proteinase slides along DNA to locate and process its substrates.
2012
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
1462
1464
10.1107/S0907444902008429
12198302
Adenovirus proteinase: crystallization and preliminary X-ray diffraction studies to atomic resolution.
2002
UK
Embo J.
EMJODG
0897
0261-4189
15
1778
1783
10.1107/S0907444902008429
8617222
Crystal structure of the human adenovirus proteinase with its 11 amino acid cofactor.
1996
NE
Biochim.Biophys.Acta
BBACAQ
0113
0006-3002
1648
1
11
12758141
Crystallographic structure at 1.6-A resolution of the human adenovirus proteinase in a covalent complex with its 11-amino-acid peptide cofactor: insights on a new fold.
2003
UK
Nature
NATUAS
0006
0028-0836
361
274
275
10.1038/361274a0
8423855
Viral DNA and a viral peptide can act as cofactors of adenovirus virion proteinase activity.
1993
10.2210/pdb4ekf/pdb
pdb_00004ekf
100.0
1
CCD
2001-07-28
BRANDEIS 4K
SINGLE WAVELENGTH
M
x-ray
1
0.92
1.0
X25
NSLS
0.92
SYNCHROTRON
NSLS BEAMLINE X25
23146.348
Adenain
3.4.22.39
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
258
nat
water
Endoprotease, Late L3 23 kDa protein
no
yes
MGSSEQELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRL
KQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAA(CSD)GLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNS
MLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRSATSFCHLKNM
MGSSEQELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRL
KQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNS
PQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRSATSFCHLKNM
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
serotype 2
sample
L3-23K
10515
Human adenovirus 2
469008
Escherichia coli
BL21 (DE3) pLys S
plasmid
pET 13a
1
1.75
29.2
5.60
0.3M sodium citrate, pH 5.6, 0.8 M sodium acetate, 5 mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
pdbx_unobs_or_zero_occ_atoms
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
repository
Initial release
Database references
Database references
Database references
Advisory
Refinement description
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-10-10
1
1
2012-10-24
1
2
2012-12-12
1
3
2013-02-06
1
4
2017-11-15
1
5
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same protein complexed with its 11 amino acid peptide cofactor, pVIc
RCSB
Y
RCSB
2012-04-09
REL
REL
NA
SODIUM ION
HOH
water
1NLN
PDB ENTRY 1NLN CHAIN A
PDB
experimental model
NA
205
2
NA
NA
301
A
HOH
1001
3
HOH
HOH
1001
A
HOH
1002
3
HOH
HOH
1002
A
HOH
1003
3
HOH
HOH
1003
A
HOH
1004
3
HOH
HOH
1004
A
HOH
1005
3
HOH
HOH
1005
A
HOH
1006
3
HOH
HOH
1006
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1008
3
HOH
HOH
1008
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1010
3
HOH
HOH
1010
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1012
3
HOH
HOH
1012
A
HOH
1013
3
HOH
HOH
1013
A
HOH
1014
3
HOH
HOH
1014
A
HOH
1015
3
HOH
HOH
1015
A
HOH
1016
3
HOH
HOH
1016
A
HOH
1017
3
HOH
HOH
1017
A
HOH
1018
3
HOH
HOH
1018
A
HOH
1019
3
HOH
HOH
1019
A
HOH
1020
3
HOH
HOH
1020
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1022
3
HOH
HOH
1022
A
HOH
1023
3
HOH
HOH
1023
A
HOH
1024
3
HOH
HOH
1024
A
HOH
1025
3
HOH
HOH
1025
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1027
3
HOH
HOH
1027
A
HOH
1028
3
HOH
HOH
1028
A
HOH
1029
3
HOH
HOH
1029
A
HOH
1030
3
HOH
HOH
1030
A
HOH
1031
3
HOH
HOH
1031
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1033
3
HOH
HOH
1033
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1035
3
HOH
HOH
1035
A
HOH
1036
3
HOH
HOH
1036
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1038
3
HOH
HOH
1038
A
HOH
1039
3
HOH
HOH
1039
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1042
3
HOH
HOH
1042
A
HOH
1043
3
HOH
HOH
1043
A
HOH
1044
3
HOH
HOH
1044
A
HOH
1045
3
HOH
HOH
1045
A
HOH
1046
3
HOH
HOH
1046
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1050
3
HOH
HOH
1050
A
HOH
1051
3
HOH
HOH
1051
A
HOH
1052
3
HOH
HOH
1052
A
HOH
1053
3
HOH
HOH
1053
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1055
3
HOH
HOH
1055
A
HOH
1056
3
HOH
HOH
1056
A
HOH
1057
3
HOH
HOH
1057
A
HOH
1058
3
HOH
HOH
1058
A
HOH
1059
3
HOH
HOH
1059
A
HOH
1060
3
HOH
HOH
1060
A
HOH
1061
3
HOH
HOH
1061
A
HOH
1062
3
HOH
HOH
1062
A
HOH
1063
3
HOH
HOH
1063
A
HOH
1064
3
HOH
HOH
1064
A
HOH
1065
3
HOH
HOH
1065
A
HOH
1066
3
HOH
HOH
1066
A
HOH
1067
3
HOH
HOH
1067
A
HOH
1068
3
HOH
HOH
1068
A
HOH
1069
3
HOH
HOH
1069
A
HOH
1070
3
HOH
HOH
1070
A
HOH
1071
3
HOH
HOH
1071
A
HOH
1072
3
HOH
HOH
1072
A
HOH
1073
3
HOH
HOH
1073
A
HOH
1074
3
HOH
HOH
1074
A
HOH
1075
3
HOH
HOH
1075
A
HOH
1076
3
HOH
HOH
1076
A
HOH
1077
3
HOH
HOH
1077
A
HOH
1078
3
HOH
HOH
1078
A
HOH
1079
3
HOH
HOH
1079
A
HOH
1080
3
HOH
HOH
1080
A
HOH
1081
3
HOH
HOH
1081
A
HOH
1082
3
HOH
HOH
1082
A
HOH
1083
3
HOH
HOH
1083
A
HOH
1084
3
HOH
HOH
1084
A
HOH
1085
3
HOH
HOH
1085
A
HOH
1086
3
HOH
HOH
1086
A
HOH
1087
3
HOH
HOH
1087
A
HOH
1088
3
HOH
HOH
1088
A
HOH
1089
3
HOH
HOH
1089
A
HOH
1090
3
HOH
HOH
1090
A
HOH
1091
3
HOH
HOH
1091
A
HOH
1092
3
HOH
HOH
1092
A
HOH
1093
3
HOH
HOH
1093
A
HOH
1096
3
HOH
HOH
1094
A
HOH
1097
3
HOH
HOH
1095
A
HOH
1098
3
HOH
HOH
1096
A
HOH
1101
3
HOH
HOH
1097
A
HOH
1102
3
HOH
HOH
1098
A
HOH
1103
3
HOH
HOH
1099
A
HOH
1104
3
HOH
HOH
1100
A
HOH
1105
3
HOH
HOH
1101
A
HOH
1106
3
HOH
HOH
1102
A
HOH
1107
3
HOH
HOH
1103
A
HOH
1108
3
HOH
HOH
1104
A
HOH
1109
3
HOH
HOH
1105
A
HOH
1110
3
HOH
HOH
1106
A
HOH
1111
3
HOH
HOH
1107
A
HOH
1112
3
HOH
HOH
1108
A
HOH
1114
3
HOH
HOH
1109
A
HOH
1115
3
HOH
HOH
1110
A
HOH
1116
3
HOH
HOH
1111
A
HOH
1117
3
HOH
HOH
1112
A
HOH
1118
3
HOH
HOH
1113
A
HOH
1119
3
HOH
HOH
1114
A
HOH
1120
3
HOH
HOH
1115
A
HOH
1121
3
HOH
HOH
1116
A
HOH
1122
3
HOH
HOH
1117
A
HOH
1123
3
HOH
HOH
1118
A
HOH
1124
3
HOH
HOH
1119
A
HOH
1125
3
HOH
HOH
1120
A
HOH
1126
3
HOH
HOH
1121
A
HOH
1127
3
HOH
HOH
1122
A
HOH
1128
3
HOH
HOH
1123
A
HOH
1129
3
HOH
HOH
1124
A
HOH
1130
3
HOH
HOH
1125
A
HOH
1131
3
HOH
HOH
1126
A
HOH
1132
3
HOH
HOH
1127
A
HOH
1133
3
HOH
HOH
1128
A
HOH
1134
3
HOH
HOH
1129
A
HOH
1135
3
HOH
HOH
1130
A
HOH
1136
3
HOH
HOH
1131
A
HOH
1137
3
HOH
HOH
1132
A
HOH
1139
3
HOH
HOH
1133
A
HOH
1140
3
HOH
HOH
1134
A
HOH
1141
3
HOH
HOH
1135
A
HOH
1142
3
HOH
HOH
1136
A
HOH
1143
3
HOH
HOH
1137
A
HOH
1144
3
HOH
HOH
1138
A
HOH
1145
3
HOH
HOH
1139
A
HOH
1146
3
HOH
HOH
1140
A
HOH
1147
3
HOH
HOH
1141
A
HOH
1148
3
HOH
HOH
1142
A
HOH
1149
3
HOH
HOH
1143
A
HOH
1150
3
HOH
HOH
1144
A
HOH
1151
3
HOH
HOH
1145
A
HOH
1152
3
HOH
HOH
1146
A
HOH
1154
3
HOH
HOH
1147
A
HOH
1155
3
HOH
HOH
1148
A
HOH
1156
3
HOH
HOH
1149
A
HOH
1157
3
HOH
HOH
1150
A
HOH
1158
3
HOH
HOH
1151
A
HOH
1159
3
HOH
HOH
1152
A
HOH
1160
3
HOH
HOH
1153
A
HOH
1161
3
HOH
HOH
1154
A
HOH
1162
3
HOH
HOH
1155
A
HOH
1163
3
HOH
HOH
1156
A
HOH
1164
3
HOH
HOH
1157
A
HOH
1165
3
HOH
HOH
1158
A
HOH
1166
3
HOH
HOH
1159
A
HOH
1167
3
HOH
HOH
1160
A
HOH
1168
3
HOH
HOH
1161
A
HOH
1169
3
HOH
HOH
1162
A
HOH
1170
3
HOH
HOH
1163
A
HOH
1171
3
HOH
HOH
1164
A
HOH
1172
3
HOH
HOH
1165
A
HOH
1173
3
HOH
HOH
1166
A
HOH
1174
3
HOH
HOH
1167
A
HOH
1175
3
HOH
HOH
1168
A
HOH
1176
3
HOH
HOH
1169
A
HOH
1177
3
HOH
HOH
1170
A
HOH
1178
3
HOH
HOH
1171
A
HOH
1179
3
HOH
HOH
1172
A
HOH
1180
3
HOH
HOH
1173
A
HOH
1181
3
HOH
HOH
1174
A
HOH
1182
3
HOH
HOH
1175
A
HOH
1183
3
HOH
HOH
1176
A
HOH
1184
3
HOH
HOH
1177
A
HOH
1185
3
HOH
HOH
1178
A
HOH
1186
3
HOH
HOH
1179
A
HOH
1187
3
HOH
HOH
1180
A
HOH
1188
3
HOH
HOH
1181
A
HOH
1189
3
HOH
HOH
1182
A
HOH
1190
3
HOH
HOH
1183
A
HOH
1191
3
HOH
HOH
1184
A
HOH
1192
3
HOH
HOH
1185
A
HOH
1193
3
HOH
HOH
1186
A
HOH
1194
3
HOH
HOH
1187
A
HOH
1195
3
HOH
HOH
1188
A
HOH
1196
3
HOH
HOH
1189
A
HOH
1197
3
HOH
HOH
1190
A
HOH
1198
3
HOH
HOH
1191
A
HOH
1199
3
HOH
HOH
1192
A
HOH
1200
3
HOH
HOH
1193
A
HOH
1201
3
HOH
HOH
1194
A
HOH
1202
3
HOH
HOH
1195
A
HOH
1203
3
HOH
HOH
1196
A
HOH
1204
3
HOH
HOH
1197
A
HOH
1205
3
HOH
HOH
1198
A
HOH
1206
3
HOH
HOH
1199
A
HOH
1207
3
HOH
HOH
1200
A
HOH
1208
3
HOH
HOH
1201
A
HOH
1209
3
HOH
HOH
1202
A
HOH
1210
3
HOH
HOH
1203
A
HOH
1211
3
HOH
HOH
1204
A
HOH
1212
3
HOH
HOH
1205
A
HOH
1213
3
HOH
HOH
1206
A
HOH
1214
3
HOH
HOH
1207
A
HOH
1215
3
HOH
HOH
1208
A
HOH
1216
3
HOH
HOH
1209
A
HOH
1217
3
HOH
HOH
1210
A
HOH
1218
3
HOH
HOH
1211
A
HOH
1219
3
HOH
HOH
1212
A
HOH
1220
3
HOH
HOH
1213
A
HOH
1221
3
HOH
HOH
1214
A
HOH
1222
3
HOH
HOH
1215
A
HOH
1223
3
HOH
HOH
1216
A
HOH
1224
3
HOH
HOH
1217
A
HOH
1225
3
HOH
HOH
1218
A
HOH
1226
3
HOH
HOH
1219
A
HOH
1227
3
HOH
HOH
1220
A
HOH
1228
3
HOH
HOH
1221
A
HOH
1229
3
HOH
HOH
1222
A
HOH
1230
3
HOH
HOH
1223
A
HOH
1231
3
HOH
HOH
1224
A
HOH
1232
3
HOH
HOH
1225
A
HOH
1233
3
HOH
HOH
1226
A
HOH
1234
3
HOH
HOH
1227
A
HOH
1235
3
HOH
HOH
1228
A
HOH
1236
3
HOH
HOH
1229
A
HOH
1237
3
HOH
HOH
1230
A
HOH
1238
3
HOH
HOH
1231
A
HOH
1239
3
HOH
HOH
1232
A
HOH
1240
3
HOH
HOH
1233
A
HOH
1241
3
HOH
HOH
1234
A
HOH
1242
3
HOH
HOH
1235
A
HOH
1243
3
HOH
HOH
1236
A
HOH
1244
3
HOH
HOH
1237
A
HOH
1245
3
HOH
HOH
1238
A
HOH
1246
3
HOH
HOH
1239
A
HOH
1247
3
HOH
HOH
1240
A
HOH
1248
3
HOH
HOH
1241
A
HOH
1249
3
HOH
HOH
1242
A
HOH
1250
3
HOH
HOH
1243
A
HOH
1251
3
HOH
HOH
1244
A
HOH
1252
3
HOH
HOH
1245
A
HOH
1253
3
HOH
HOH
1246
A
HOH
1254
3
HOH
HOH
1247
A
HOH
1255
3
HOH
HOH
1248
A
HOH
1256
3
HOH
HOH
1249
A
HOH
1257
3
HOH
HOH
1250
A
HOH
1258
3
HOH
HOH
1251
A
HOH
1259
3
HOH
HOH
1252
A
HOH
1260
3
HOH
HOH
1253
A
HOH
1261
3
HOH
HOH
1254
A
HOH
1262
3
HOH
HOH
1255
A
HOH
1263
3
HOH
HOH
1256
A
HOH
1264
3
HOH
HOH
1257
A
HOH
1265
3
HOH
HOH
1258
A
MET
1
n
1
MET
1
A
GLY
2
n
2
GLY
2
A
SER
3
n
3
SER
3
A
SER
4
n
4
SER
4
A
GLU
5
n
5
GLU
5
A
GLN
6
n
6
GLN
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
LYS
9
n
9
LYS
9
A
ALA
10
n
10
ALA
10
A
ILE
11
n
11
ILE
11
A
VAL
12
n
12
VAL
12
A
LYS
13
n
13
LYS
13
A
ASP
14
n
14
ASP
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
CYS
17
n
17
CYS
17
A
GLY
18
n
18
GLY
18
A
PRO
19
n
19
PRO
19
A
TYR
20
n
20
TYR
20
A
PHE
21
n
21
PHE
21
A
LEU
22
n
22
LEU
22
A
GLY
23
n
23
GLY
23
A
THR
24
n
24
THR
24
A
TYR
25
n
25
TYR
25
A
ASP
26
n
26
ASP
26
A
LYS
27
n
27
LYS
27
A
ARG
28
n
28
ARG
28
A
PHE
29
n
29
PHE
29
A
PRO
30
n
30
PRO
30
A
GLY
31
n
31
GLY
31
A
PHE
32
n
32
PHE
32
A
VAL
33
n
33
VAL
33
A
SER
34
n
34
SER
34
A
PRO
35
n
35
PRO
35
A
HIS
36
n
36
HIS
36
A
LYS
37
n
37
LYS
37
A
LEU
38
n
38
LEU
38
A
ALA
39
n
39
ALA
39
A
CYS
40
n
40
CYS
40
A
ALA
41
n
41
ALA
41
A
ILE
42
n
42
ILE
42
A
VAL
43
n
43
VAL
43
A
ASN
44
n
44
ASN
44
A
THR
45
n
45
THR
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
n
48
48
A
n
49
49
A
n
50
50
A
n
51
51
A
GLY
52
n
52
GLY
52
A
VAL
53
n
53
VAL
53
A
HIS
54
n
54
HIS
54
A
TRP
55
n
55
TRP
55
A
MET
56
n
56
MET
56
A
ALA
57
n
57
ALA
57
A
PHE
58
n
58
PHE
58
A
ALA
59
n
59
ALA
59
A
TRP
60
n
60
TRP
60
A
ASN
61
n
61
ASN
61
A
PRO
62
n
62
PRO
62
A
ARG
63
n
63
ARG
63
A
SER
64
n
64
SER
64
A
LYS
65
n
65
LYS
65
A
THR
66
n
66
THR
66
A
CYS
67
n
67
CYS
67
A
TYR
68
n
68
TYR
68
A
LEU
69
n
69
LEU
69
A
PHE
70
n
70
PHE
70
A
GLU
71
n
71
GLU
71
A
PRO
72
n
72
PRO
72
A
PHE
73
n
73
PHE
73
A
GLY
74
n
74
GLY
74
A
PHE
75
n
75
PHE
75
A
SER
76
n
76
SER
76
A
ASP
77
n
77
ASP
77
A
GLN
78
n
78
GLN
78
A
ARG
79
n
79
ARG
79
A
LEU
80
n
80
LEU
80
A
LYS
81
n
81
LYS
81
A
GLN
82
n
82
GLN
82
A
VAL
83
n
83
VAL
83
A
TYR
84
n
84
TYR
84
A
GLN
85
n
85
GLN
85
A
PHE
86
n
86
PHE
86
A
GLU
87
n
87
GLU
87
A
TYR
88
n
88
TYR
88
A
GLU
89
n
89
GLU
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
LEU
92
n
92
LEU
92
A
ARG
93
n
93
ARG
93
A
ARG
94
n
94
ARG
94
A
SER
95
n
95
SER
95
A
ALA
96
n
96
ALA
96
A
n
97
97
A
n
98
98
A
n
99
99
A
n
100
100
A
n
101
101
A
n
102
102
A
n
103
103
A
n
104
104
A
ILE
105
n
105
ILE
105
A
THR
106
n
106
THR
106
A
LEU
107
n
107
LEU
107
A
GLU
108
n
108
GLU
108
A
LYS
109
n
109
LYS
109
A
SER
110
n
110
SER
110
A
THR
111
n
111
THR
111
A
GLN
112
n
112
GLN
112
A
SER
113
n
113
SER
113
A
VAL
114
n
114
VAL
114
A
GLN
115
n
115
GLN
115
A
GLY
116
n
116
GLY
116
A
PRO
117
n
117
PRO
117
A
ASN
118
n
118
ASN
118
A
SER
119
n
119
SER
119
A
ALA
120
n
120
ALA
120
A
ALA
121
n
121
ALA
121
A
CSD
122
n
122
CSD
122
A
GLY
123
n
123
GLY
123
A
LEU
124
n
124
LEU
124
A
PHE
125
n
125
PHE
125
A
CYS
126
n
126
CYS
126
A
CYS
127
n
127
CYS
127
A
MET
128
n
128
MET
128
A
PHE
129
n
129
PHE
129
A
LEU
130
n
130
LEU
130
A
HIS
131
n
131
HIS
131
A
ALA
132
n
132
ALA
132
A
PHE
133
n
133
PHE
133
A
ALA
134
n
134
ALA
134
A
ASN
135
n
135
ASN
135
A
TRP
136
n
136
TRP
136
A
PRO
137
n
137
PRO
137
A
GLN
138
n
138
GLN
138
A
THR
139
n
139
THR
139
A
PRO
140
n
140
PRO
140
A
MET
141
n
141
MET
141
A
ASP
142
n
142
ASP
142
A
HIS
143
n
143
HIS
143
A
ASN
144
n
144
ASN
144
A
PRO
145
n
145
PRO
145
A
THR
146
n
146
THR
146
A
MET
147
n
147
MET
147
A
ASN
148
n
148
ASN
148
A
LEU
149
n
149
LEU
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
GLY
152
n
152
GLY
152
A
VAL
153
n
153
VAL
153
A
PRO
154
n
154
PRO
154
A
ASN
155
n
155
ASN
155
A
SER
156
n
156
SER
156
A
MET
157
n
157
MET
157
A
LEU
158
n
158
LEU
158
A
ASN
159
n
159
ASN
159
A
SER
160
n
160
SER
160
A
PRO
161
n
161
PRO
161
A
GLN
162
n
162
GLN
162
A
VAL
163
n
163
VAL
163
A
GLN
164
n
164
GLN
164
A
PRO
165
n
165
PRO
165
A
THR
166
n
166
THR
166
A
LEU
167
n
167
LEU
167
A
ARG
168
n
168
ARG
168
A
ARG
169
n
169
ARG
169
A
ASN
170
n
170
ASN
170
A
GLN
171
n
171
GLN
171
A
GLU
172
n
172
GLU
172
A
GLN
173
n
173
GLN
173
A
LEU
174
n
174
LEU
174
A
TYR
175
n
175
TYR
175
A
SER
176
n
176
SER
176
A
PHE
177
n
177
PHE
177
A
LEU
178
n
178
LEU
178
A
GLU
179
n
179
GLU
179
A
ARG
180
n
180
ARG
180
A
HIS
181
n
181
HIS
181
A
SER
182
n
182
SER
182
A
PRO
183
n
183
PRO
183
A
TYR
184
n
184
TYR
184
A
PHE
185
n
185
PHE
185
A
ARG
186
n
186
ARG
186
A
SER
187
n
187
SER
187
A
HIS
188
n
188
HIS
188
A
SER
189
n
189
SER
189
A
ALA
190
n
190
ALA
190
A
GLN
191
n
191
GLN
191
A
ILE
192
n
192
ILE
192
A
ARG
193
n
193
ARG
193
A
SER
194
n
194
SER
194
A
ALA
195
n
195
ALA
195
A
THR
196
n
196
THR
196
A
SER
197
n
197
SER
197
A
PHE
198
n
198
PHE
198
A
CYS
199
n
199
CYS
199
A
HIS
200
n
200
HIS
200
A
LEU
201
n
201
LEU
201
A
LYS
202
n
202
LYS
202
A
ASN
203
n
203
ASN
203
A
MET
204
n
204
MET
204
A
0.1238
0.1353
0.1587
0.1678
73796
author_and_software_defined_assembly
PISA
1
monomeric
A
MET
147
A
O
MET
147
1_555
A
NA
301
B
NA
NA
1_555
A
ILE
150
A
O
ILE
150
1_555
83.5
A
MET
147
A
O
MET
147
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1036
C
O
HOH
1_555
81.8
A
ILE
150
A
O
ILE
150
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1036
C
O
HOH
1_555
155.4
A
MET
147
A
O
MET
147
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1038
C
O
HOH
1_555
96.3
A
ILE
150
A
O
ILE
150
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1038
C
O
HOH
1_555
120.7
A
HOH
1036
C
O
HOH
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1038
C
O
HOH
1_555
80.7
A
MET
147
A
O
MET
147
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1069
C
O
HOH
1_555
116.2
A
ILE
150
A
O
ILE
150
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1069
C
O
HOH
1_555
73.6
A
HOH
1036
C
O
HOH
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1069
C
O
HOH
1_555
95.5
A
HOH
1038
C
O
HOH
1_555
A
NA
301
B
NA
NA
1_555
A
HOH
1069
C
O
HOH
1_555
146.5
A
CSD
122
3-SULFINOALANINE
A
CSD
122
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
22
A
N
LEU
22
A
O
CYS
40
A
O
CYS
40
A
N
VAL
43
A
N
VAL
43
A
O
MET
56
A
O
MET
56
A
N
ALA
59
A
N
ALA
59
A
O
TYR
68
A
O
TYR
68
A
N
CYS
67
A
N
CYS
67
A
O
GLU
108
A
O
GLU
108
1
A
CG
GLU
7
A
A
CG
GLU
7
0
Y
1
A
OD1
ASP
26
B
A
OD1
ASP
26
0
Y
1
A
NZ
LYS
27
A
NZ
LYS
27
0
Y
1
A
CB
ALA
96
A
CB
ALA
96
0
Y
1
A
ARG
48
A
ARG
48
1
Y
1
A
GLU
49
A
GLU
49
1
Y
1
A
THR
50
A
THR
50
1
Y
1
A
GLY
51
A
GLY
51
1
Y
1
A
ILE
97
A
ILE
97
1
Y
1
A
ALA
98
A
ALA
98
1
Y
1
A
SER
99
A
SER
99
1
Y
1
A
SER
100
A
SER
100
1
Y
1
A
PRO
101
A
PRO
101
1
Y
1
A
ASP
102
A
ASP
102
1
Y
1
A
ARG
103
A
ARG
103
1
Y
1
A
CYS
104
A
CYS
104
1
Y
1
-4.86
0.70
120.80
115.94
A
A
A
CB
CG
CD2
PHE
PHE
PHE
29
29
29
N
1
4.33
0.70
120.80
125.13
A
A
A
CB
CG
CD1
PHE
PHE
PHE
29
29
29
N
1
14.72
1.90
121.10
135.82
A
A
A
O
C
N
PHE
PHE
PRO
29
29
30
Y
1
-4.52
0.70
120.80
116.28
A
A
A
CB
CG
CD1
PHE
PHE
PHE
32
32
32
N
1
12.31
1.70
113.30
125.61
A
A
A
CA
CB
CG
MET
MET
MET
56
56
56
B
N
1
3.96
0.50
120.30
124.26
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
63
63
63
N
1
-3.30
0.50
120.30
117.00
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
63
63
63
N
1
-7.12
1.10
119.40
112.28
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
79
79
79
N
1
8.11
0.50
120.30
128.41
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
79
79
79
N
1
3.39
0.50
120.30
123.69
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
168
168
168
N
1
-5.21
0.50
120.30
115.09
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
168
168
168
N
1
8.55
1.40
123.60
132.15
A
A
A
CD
NE
CZ
ARG
ARG
ARG
169
169
169
A
A
A
N
1
-3.20
0.50
120.30
117.10
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
169
169
169
B
B
B
N
1
7.63
1.10
119.40
127.03
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
186
186
186
N
1
-4.70
0.50
120.30
115.60
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
186
186
186
N
1
6.77
1.00
109.00
115.77
A
A
A
CG
ND1
CE1
HIS
HIS
HIS
200
200
200
N
1
17.93
2.20
113.40
131.33
A
A
A
CA
CB
CG
LYS
LYS
LYS
202
202
202
N
1
A
A
C
N
PHE
PRO
29
30
0.117
0.019
1.338
1.455
Y
1
A
A
CG
ND2
ASN
ASN
159
159
-0.157
0.025
1.324
1.167
N
1
A
LYS
27
68.05
-48.73
1
A
HIS
54
80.37
54.95
1
A
THR
139
-154.93
61.79
17.7814
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?
0.1678
0.135
0.135
0.98
20.00
16135
90549
92231
19747
97.3
1.000
0.000
RANDOM
1
FREE R
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1NLN CHAIN A
ENGH AND HUBER
0.127
12
1406.00
1732.98
0.98
20.00
258
1794
1
0
1535
0.029
0.045
0.000
0.0278
0.093
0.172
0.119
0.006
0.046
0.079
8.59
0.980
30.000
4EKF
92231
0.057
1
25.4
4.9
99.1
0.594
0.98
1.00
1
2.2
97.1
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Jorge Navaza
ccp4@ccp4.ac.uk
Fortran_77
http://www.ccp4.ac.uk/
AMoRE
program
refinement
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
HKL-2000
data scaling
HKL-2000
refinement
SHELXL-97
Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution
1
N
N
2
N
N
3
N
N
A
SER
4
A
SER
4
HELX_P
A
LEU
15
A
LEU
15
1
1
12
A
CYS
17
A
CYS
17
HELX_P
A
PRO
19
A
PRO
19
5
2
3
A
ASP
77
A
ASP
77
HELX_P
A
ALA
96
A
ALA
96
1
3
20
A
ALA
121
A
ALA
121
HELX_P
A
TRP
136
A
TRP
136
1
4
16
A
THR
146
A
THR
146
HELX_P
A
ILE
150
A
ILE
150
5
5
5
A
PRO
154
A
PRO
154
HELX_P
A
LEU
158
A
LEU
158
5
6
5
A
SER
160
A
SER
160
HELX_P
A
GLN
162
A
GLN
162
5
7
3
A
VAL
163
A
VAL
163
HELX_P
A
SER
182
A
SER
182
1
8
20
A
SER
182
A
SER
182
HELX_P
A
HIS
188
A
HIS
188
1
9
7
A
HIS
188
A
HIS
188
HELX_P
A
THR
196
A
THR
196
1
10
9
covale
1.354
both
A
ALA
121
A
C
ALA
121
1_555
A
CSD
122
A
N
CSD
122
1_555
covale
1.322
both
A
CSD
122
A
C
CSD
122
1_555
A
GLY
123
A
N
GLY
123
1_555
metalc
2.402
A
MET
147
A
O
MET
147
1_555
A
NA
301
B
NA
NA
1_555
metalc
2.287
A
ILE
150
A
O
ILE
150
1_555
A
NA
301
B
NA
NA
1_555
metalc
2.276
A
NA
301
B
NA
NA
1_555
A
HOH
1036
C
O
HOH
1_555
metalc
2.410
A
NA
301
B
NA
NA
1_555
A
HOH
1038
C
O
HOH
1_555
metalc
2.474
A
NA
301
B
NA
NA
1_555
A
HOH
1069
C
O
HOH
1_555
HYDROLASE
alpha and beta protein (a+b), Hydrolase
ADEN_ADE02
UNP
1
1
P03252
MGSSEQELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRL
KQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNS
PQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRSATSFCHLKNM
1
204
4EKF
1
204
P03252
A
1
1
204
5
parallel
anti-parallel
anti-parallel
parallel
A
PHE
21
A
PHE
21
A
ASP
26
A
ASP
26
A
ALA
39
A
ALA
39
A
ASN
44
A
ASN
44
A
TRP
55
A
TRP
55
A
ASN
61
A
ASN
61
A
THR
66
A
THR
66
A
PHE
70
A
PHE
70
A
THR
106
A
THR
106
A
LYS
109
A
LYS
109
BINDING SITE FOR RESIDUE NA A 301
A
NA
301
Software
5
A
MET
147
A
MET
147
5
1_555
A
ILE
150
A
ILE
150
5
1_555
A
HOH
1036
C
HOH
5
1_555
A
HOH
1038
C
HOH
5
1_555
A
HOH
1069
C
HOH
5
1_555
4
P 1 21 1