0.009186
0.005304
0.000000
0.000000
0.010607
0.000000
0.000000
0.000000
0.010989
0.00000
0.00000
0.00000
Marx, A.
Diederichs, K.
Obeid, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
108.860
108.860
91.004
C19 H19 N2 O14 P3
592.280
2'-deoxy-5-[(4-ethynylphenyl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)
non-polymer
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O6 P
291.198
n
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
P
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
P
N
11
N
O
N
12
N
O
N
13
N
O
N
14
N
C
N
15
R
C
N
16
S
C
N
17
N
O
N
18
N
C
N
19
N
O
N
20
R
C
N
21
N
N
N
22
N
C
N
23
N
O
N
24
N
N
N
25
N
C
N
26
N
O
N
27
N
C
N
28
N
C
N
29
N
C
N
30
N
C
Y
31
N
C
Y
32
N
C
Y
33
N
C
Y
34
N
C
N
35
N
C
N
36
N
C
Y
37
N
C
Y
38
N
C
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
C
N
59
N
O
N
60
N
O
N
61
N
C
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
C
N
85
N
N
N
86
N
C
N
87
N
N
N
88
N
N
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
O
N
112
N
N
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
O
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
O
N
139
N
P
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
C
N
144
R
C
N
145
N
O
N
146
S
C
N
147
N
O
N
148
N
C
N
149
R
C
Y
150
N
N
Y
151
N
C
Y
152
N
N
Y
153
N
C
Y
154
N
C
N
155
N
N
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
O
N
175
N
P
N
176
N
O
N
177
N
O
N
178
N
O
N
179
N
C
N
180
R
C
N
181
N
O
N
182
S
C
N
183
N
O
N
184
N
C
N
185
R
C
N
186
N
N
N
187
N
C
N
188
N
O
N
189
N
N
N
190
N
C
N
191
N
N
N
192
N
C
N
193
N
C
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
O
N
209
N
P
N
210
N
O
N
211
N
O
N
212
N
O
N
213
N
C
N
214
R
C
N
215
N
O
N
216
S
C
N
217
N
O
N
218
N
C
N
219
R
C
Y
220
N
N
Y
221
N
C
Y
222
N
N
Y
223
N
C
N
224
N
C
N
225
N
O
N
226
N
N
N
227
N
C
N
228
N
N
N
229
N
N
Y
230
N
C
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
N
C
N
247
N
N
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
N
N
253
R
C
N
254
N
C
N
255
N
C
N
256
S
C
N
257
N
O
N
258
N
C
N
259
N
O
N
260
N
P
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
O
N
279
N
P
N
280
N
O
N
281
N
O
N
282
N
O
N
283
N
C
N
284
R
C
N
285
N
O
N
286
S
C
N
287
N
O
N
288
N
C
N
289
R
C
N
290
N
N
N
291
N
C
N
292
N
O
N
293
N
N
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
N
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
O
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
N
C
N
365
N
C
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
N
Y
394
N
C
Y
395
N
C
Y
396
N
N
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
S
C
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
N
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
N
N
481
S
C
N
482
N
C
N
483
N
O
N
484
N
C
N
485
N
C
N
486
N
S
N
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
MG
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
N
512
N
O
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
N
N
525
S
C
N
526
N
C
N
527
N
O
N
528
N
C
N
529
N
C
N
530
N
C
N
531
N
O
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
N
N
542
S
C
N
543
N
C
N
544
N
O
N
545
N
C
N
546
N
O
N
547
N
O
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
N
N
556
S
C
N
557
N
C
N
558
N
O
N
559
R
C
N
560
N
O
N
561
N
C
N
562
N
O
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
N
N
573
S
C
N
574
N
C
N
575
N
O
N
576
N
C
Y
577
N
C
Y
578
N
C
Y
579
N
C
Y
580
N
N
Y
581
N
C
Y
582
N
C
Y
583
N
C
Y
584
N
C
Y
585
N
C
N
586
N
O
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
N
N
600
S
C
N
601
N
C
N
602
N
O
N
603
N
C
Y
604
N
C
Y
605
N
C
Y
606
N
C
Y
607
N
C
Y
608
N
C
Y
609
N
C
N
610
N
O
N
611
N
O
N
612
N
H
N
613
N
H
N
614
N
H
N
615
N
H
N
616
N
H
N
617
N
H
N
618
N
H
N
619
N
H
N
620
N
H
N
621
N
H
N
622
N
H
N
623
N
N
N
624
S
C
N
625
N
C
N
626
N
O
N
627
N
C
N
628
N
C
N
629
N
C
N
630
N
O
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
H
N
639
N
H
N
640
N
H
N
641
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
Y
21
N
doub
Y
22
N
sing
N
23
N
sing
Y
24
N
sing
N
25
N
trip
N
26
N
sing
Y
27
N
doub
N
28
N
sing
N
29
N
doub
N
30
N
sing
N
31
N
sing
Y
32
N
doub
N
33
N
trip
N
34
N
sing
N
35
N
sing
Y
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
Y
158
N
sing
Y
159
N
sing
Y
160
N
doub
N
161
N
sing
Y
162
N
sing
Y
163
N
sing
Y
164
N
doub
N
165
N
sing
Y
166
N
doub
N
167
N
sing
N
168
N
sing
Y
169
N
sing
Y
170
N
doub
N
171
N
sing
Y
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
Y
231
N
sing
Y
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
doub
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
sing
Y
398
N
doub
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
doub
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
doub
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
doub
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
Y
505
N
doub
Y
506
N
sing
Y
507
N
sing
N
508
N
sing
Y
509
N
doub
N
510
N
sing
Y
511
N
doub
N
512
N
sing
Y
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
doub
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
doub
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
doub
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
doub
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
Y
574
N
doub
Y
575
N
sing
Y
576
N
sing
N
577
N
sing
Y
578
N
doub
Y
579
N
sing
Y
580
N
sing
N
581
N
sing
Y
582
N
sing
Y
583
N
doub
N
584
N
sing
Y
585
N
doub
N
586
N
sing
Y
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
doub
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
Y
602
N
doub
Y
603
N
sing
Y
604
N
sing
N
605
N
sing
Y
606
N
doub
N
607
N
sing
Y
608
N
doub
N
609
N
sing
Y
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
doub
N
622
N
sing
N
623
N
sing
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
UK
Chem.Commun.(Camb.)
1359-7345
48
8320
8322
10.1039/c2cc34181f
22766607
Interactions of non-polar and "Click-able" nucleotides in the confines of a DNA polymerase active site.
2012
10.2210/pdb4elt/pdb
pdb_00004elt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-05-20
MARMOSAIC 225 mm CCD
Bartels Monochromator with dual channel cut crystals (DCCM)
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
X06DA
SLS
1.00
SYNCHROTRON
SLS BEAMLINE X06DA
60936.965
DNA polymerase I, thermostable
2.7.7.7
1
man
polymer
DNA primer
3617.371
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3')
1
syn
polymer
DNA template
4948.217
DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')
1
syn
polymer
592.280
2'-deoxy-5-[(4-ethynylphenyl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)
1
syn
non-polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
92.094
GLYCEROL
9
syn
non-polymer
59.044
ACETATE ION
3
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
245
nat
water
Taq polymerase 1
no
no
ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD
PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD
VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI
LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS
QIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF
IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL
EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE
ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD
PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD
VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI
LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS
QIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF
IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL
EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE
A
polypeptide(L)
no
yes
(DG)(DA)(DC)(DC)(DA)(DC)(DG)(DG)(DC)(DG)(DC)(DOC)
GACCACGGCGCC
B
polydeoxyribonucleotide
no
no
(DA)(DA)(DA)(DA)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DT)(DG)(DG)(DT)(DC)
AAAAGGCGCCGTGGTC
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
polA, pol1
271
Thermus aquaticus
562
Escherichia coli
1
2.24
45.08
VAPOR DIFFUSION, HANGING DROP
6.5
50 mM Na cacodylate pH=6.5, 0.2 M NH4(OAc), 10 mM Mg(OAc)2, 28% PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
-6.500
1
19
B
101
C
216
0.852
B_DG101:DC216_C
1
-11.949
-0.550
0.150
-0.241
1.335
1
20
B
102
C
215
2.936
B_DA102:DT215_C
2
-9.697
-0.199
0.210
-0.300
2.128
1
19
B
103
C
214
3.906
B_DC103:DG214_C
3
-17.729
0.187
0.081
-0.162
-5.530
1
19
B
104
C
213
2.815
B_DC104:DG213_C
4
-13.540
0.012
0.109
-0.347
-3.718
1
20
B
105
C
212
-1.223
B_DA105:DT212_C
5
-11.421
0.211
-0.193
-0.073
-2.027
1
19
B
106
C
211
2.140
B_DC106:DG211_C
6
-6.522
0.187
0.135
-0.063
6.353
1
19
B
107
C
210
1.884
B_DG107:DC210_C
7
-18.142
-0.378
0.156
-0.107
-5.711
1
19
B
108
C
209
-1.002
B_DG108:DC209_C
8
-9.876
-0.225
-0.034
-0.387
6.566
1
19
B
109
C
208
3.097
B_DC109:DG208_C
9
0.543
0.133
-0.400
0.026
7.856
1
19
B
110
C
207
0.914
B_DG110:DC207_C
10
-15.128
-0.133
0.217
-0.178
9.351
1
19
B
111
C
206
3.147
B_DC111:DG206_C
11
-10.330
0.351
-0.153
-0.078
5.669
1
19
B
112
C
205
2.339
B_DOC112:DG205_C
12
-12.037
0.353
0.100
-0.170
2.939
33.588
B
B
101
102
6.514
C
C
216
215
3.043
3.756
0.050
-0.796
BB_DG101DA102:DT215DC216_CC
1
0.798
-1.384
33.374
-1.941
0.033
3.087
33.117
B
B
102
103
6.048
C
C
215
214
3.189
3.441
0.302
-0.897
BB_DA102DC103:DG214DT215_CC
2
0.595
-1.046
32.937
-2.132
-0.434
2.912
30.109
B
B
103
104
16.255
C
C
214
213
3.355
8.339
-0.603
-1.162
BB_DC103DC104:DG213DG214_CC
3
0.134
-0.262
28.957
-3.903
1.188
3.300
37.972
B
B
104
105
14.943
C
C
213
212
3.322
9.614
-0.698
0.597
BB_DC104DA105:DT212DG213_CC
4
3.169
-4.925
36.646
-0.347
1.490
3.102
30.959
B
B
105
106
5.849
C
C
212
211
3.205
3.115
0.539
-0.421
BB_DA105DC106:DG211DT212_CC
5
-2.229
4.187
30.727
-1.372
-1.427
3.109
32.539
B
B
106
107
18.904
C
C
211
210
3.108
10.411
0.304
0.465
BB_DC106DG107:DC210DG211_CC
6
1.678
-3.048
30.826
-0.949
-0.256
3.564
32.646
B
B
107
108
2.965
C
C
210
209
3.515
1.663
0.875
-0.421
BB_DG107DG108:DC209DC210_CC
7
3.610
-6.438
32.410
-1.062
-0.877
2.990
32.776
B
B
108
109
12.891
C
C
209
208
3.054
7.191
0.892
-0.423
BB_DG108DC109:DG208DC209_CC
8
4.975
-8.918
31.619
-1.914
-0.775
3.412
41.680
B
B
109
110
10.580
C
C
208
207
3.396
7.399
-0.631
0.130
BB_DC109DG110:DC207DG208_CC
9
-11.586
16.567
39.443
-0.654
-0.423
2.751
28.986
B
B
110
111
22.421
C
C
207
206
3.563
10.953
-0.316
-1.472
BB_DG110DC111:DG206DC207_CC
10
0.960
-1.965
26.862
-5.368
0.845
2.732
34.240
B
B
111
112
20.881
C
C
206
205
3.458
12.032
-0.355
-1.561
BB_DC111DOC112:DG205DG206_CC
11
-2.819
4.892
31.995
-4.510
0.168
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-03-27
1
1
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-04-11
REL
REL
0R5
2'-deoxy-5-[(4-ethynylphenyl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)
MG
MAGNESIUM ION
GOL
GLYCEROL
ACT
ACETATE ION
EDO
1,2-ETHANEDIOL
HOH
water
32630
Synthetic DNA
sample
32630
Synthetic DNA
sample
3OJS
PDB
experimental model
0R5
901
4
0R5
0R5
901
A
MG
902
5
MG
MG
902
A
MG
903
5
MG
MG
903
A
GOL
904
6
GOL
GOL
904
A
ACT
905
7
ACT
ACT
905
A
GOL
906
6
GOL
GOL
906
A
GOL
907
6
GOL
GOL
907
A
ACT
908
7
ACT
ACT
908
A
GOL
909
6
GOL
GOL
909
A
GOL
910
6
GOL
GOL
910
A
GOL
911
6
GOL
GOL
911
A
ACT
912
7
ACT
ACT
912
A
GOL
913
6
GOL
GOL
913
A
EDO
914
8
EDO
EDO
914
A
GOL
201
6
GOL
GOL
201
B
GOL
301
6
GOL
GOL
301
C
MG
302
5
MG
MG
302
C
HOH
1001
9
HOH
HOH
1001
A
HOH
1002
9
HOH
HOH
1002
A
HOH
1003
9
HOH
HOH
1003
A
HOH
1004
9
HOH
HOH
1004
A
HOH
1005
9
HOH
HOH
1005
A
HOH
1006
9
HOH
HOH
1006
A
HOH
1007
9
HOH
HOH
1007
A
HOH
1008
9
HOH
HOH
1008
A
HOH
1009
9
HOH
HOH
1009
A
HOH
1010
9
HOH
HOH
1010
A
HOH
1011
9
HOH
HOH
1011
A
HOH
1012
9
HOH
HOH
1012
A
HOH
1013
9
HOH
HOH
1013
A
HOH
1014
9
HOH
HOH
1014
A
HOH
1015
9
HOH
HOH
1015
A
HOH
1016
9
HOH
HOH
1016
A
HOH
1017
9
HOH
HOH
1017
A
HOH
1018
9
HOH
HOH
1018
A
HOH
1019
9
HOH
HOH
1019
A
HOH
1020
9
HOH
HOH
1020
A
HOH
1021
9
HOH
HOH
1021
A
HOH
1022
9
HOH
HOH
1022
A
HOH
1023
9
HOH
HOH
1023
A
HOH
1024
9
HOH
HOH
1024
A
HOH
1025
9
HOH
HOH
1025
A
HOH
1026
9
HOH
HOH
1026
A
HOH
1027
9
HOH
HOH
1027
A
HOH
1028
9
HOH
HOH
1028
A
HOH
1029
9
HOH
HOH
1029
A
HOH
1030
9
HOH
HOH
1030
A
HOH
1031
9
HOH
HOH
1031
A
HOH
1032
9
HOH
HOH
1032
A
HOH
1033
9
HOH
HOH
1033
A
HOH
1034
9
HOH
HOH
1034
A
HOH
1035
9
HOH
HOH
1035
A
HOH
1036
9
HOH
HOH
1036
A
HOH
1037
9
HOH
HOH
1037
A
HOH
1038
9
HOH
HOH
1038
A
HOH
1039
9
HOH
HOH
1039
A
HOH
1040
9
HOH
HOH
1040
A
HOH
1041
9
HOH
HOH
1041
A
HOH
1042
9
HOH
HOH
1042
A
HOH
1043
9
HOH
HOH
1043
A
HOH
1045
9
HOH
HOH
1044
A
HOH
1046
9
HOH
HOH
1045
A
HOH
1047
9
HOH
HOH
1046
A
HOH
1048
9
HOH
HOH
1047
A
HOH
1049
9
HOH
HOH
1048
A
HOH
1050
9
HOH
HOH
1049
A
HOH
1051
9
HOH
HOH
1050
A
HOH
1052
9
HOH
HOH
1051
A
HOH
1053
9
HOH
HOH
1052
A
HOH
1054
9
HOH
HOH
1053
A
HOH
1055
9
HOH
HOH
1054
A
HOH
1056
9
HOH
HOH
1055
A
HOH
1057
9
HOH
HOH
1056
A
HOH
1058
9
HOH
HOH
1057
A
HOH
1059
9
HOH
HOH
1058
A
HOH
1060
9
HOH
HOH
1059
A
HOH
1061
9
HOH
HOH
1060
A
HOH
1062
9
HOH
HOH
1061
A
HOH
1063
9
HOH
HOH
1062
A
HOH
1064
9
HOH
HOH
1063
A
HOH
1065
9
HOH
HOH
1064
A
HOH
1066
9
HOH
HOH
1065
A
HOH
1067
9
HOH
HOH
1066
A
HOH
1068
9
HOH
HOH
1067
A
HOH
1069
9
HOH
HOH
1068
A
HOH
1070
9
HOH
HOH
1069
A
HOH
1071
9
HOH
HOH
1070
A
HOH
1072
9
HOH
HOH
1071
A
HOH
1073
9
HOH
HOH
1072
A
HOH
1074
9
HOH
HOH
1073
A
HOH
1075
9
HOH
HOH
1074
A
HOH
1076
9
HOH
HOH
1075
A
HOH
1077
9
HOH
HOH
1076
A
HOH
1078
9
HOH
HOH
1077
A
HOH
1079
9
HOH
HOH
1078
A
HOH
1080
9
HOH
HOH
1079
A
HOH
1081
9
HOH
HOH
1080
A
HOH
1082
9
HOH
HOH
1081
A
HOH
1083
9
HOH
HOH
1082
A
HOH
1084
9
HOH
HOH
1083
A
HOH
1085
9
HOH
HOH
1084
A
HOH
1086
9
HOH
HOH
1085
A
HOH
1087
9
HOH
HOH
1086
A
HOH
1088
9
HOH
HOH
1087
A
HOH
1089
9
HOH
HOH
1088
A
HOH
1090
9
HOH
HOH
1089
A
HOH
1091
9
HOH
HOH
1090
A
HOH
1092
9
HOH
HOH
1091
A
HOH
1093
9
HOH
HOH
1092
A
HOH
1094
9
HOH
HOH
1093
A
HOH
1095
9
HOH
HOH
1094
A
HOH
1096
9
HOH
HOH
1095
A
HOH
1097
9
HOH
HOH
1096
A
HOH
1098
9
HOH
HOH
1097
A
HOH
1099
9
HOH
HOH
1098
A
HOH
1100
9
HOH
HOH
1099
A
HOH
1101
9
HOH
HOH
1100
A
HOH
1102
9
HOH
HOH
1101
A
HOH
1103
9
HOH
HOH
1102
A
HOH
1104
9
HOH
HOH
1103
A
HOH
1105
9
HOH
HOH
1104
A
HOH
1106
9
HOH
HOH
1105
A
HOH
1107
9
HOH
HOH
1106
A
HOH
1108
9
HOH
HOH
1107
A
HOH
1109
9
HOH
HOH
1108
A
HOH
1110
9
HOH
HOH
1109
A
HOH
1111
9
HOH
HOH
1110
A
HOH
1112
9
HOH
HOH
1111
A
HOH
1113
9
HOH
HOH
1112
A
HOH
1114
9
HOH
HOH
1113
A
HOH
1115
9
HOH
HOH
1114
A
HOH
1116
9
HOH
HOH
1115
A
HOH
1117
9
HOH
HOH
1116
A
HOH
1118
9
HOH
HOH
1117
A
HOH
1119
9
HOH
HOH
1118
A
HOH
1120
9
HOH
HOH
1119
A
HOH
1121
9
HOH
HOH
1120
A
HOH
1122
9
HOH
HOH
1121
A
HOH
1123
9
HOH
HOH
1122
A
HOH
1124
9
HOH
HOH
1123
A
HOH
1125
9
HOH
HOH
1124
A
HOH
1126
9
HOH
HOH
1125
A
HOH
1127
9
HOH
HOH
1126
A
HOH
1128
9
HOH
HOH
1127
A
HOH
1129
9
HOH
HOH
1128
A
HOH
1130
9
HOH
HOH
1129
A
HOH
1131
9
HOH
HOH
1130
A
HOH
1132
9
HOH
HOH
1131
A
HOH
1133
9
HOH
HOH
1132
A
HOH
1134
9
HOH
HOH
1133
A
HOH
1135
9
HOH
HOH
1134
A
HOH
1136
9
HOH
HOH
1135
A
HOH
1137
9
HOH
HOH
1136
A
HOH
1138
9
HOH
HOH
1137
A
HOH
1139
9
HOH
HOH
1138
A
HOH
1140
9
HOH
HOH
1139
A
HOH
1141
9
HOH
HOH
1140
A
HOH
1142
9
HOH
HOH
1141
A
HOH
1143
9
HOH
HOH
1142
A
HOH
1144
9
HOH
HOH
1143
A
HOH
1145
9
HOH
HOH
1144
A
HOH
1146
9
HOH
HOH
1145
A
HOH
1147
9
HOH
HOH
1146
A
HOH
1148
9
HOH
HOH
1147
A
HOH
1149
9
HOH
HOH
1148
A
HOH
1150
9
HOH
HOH
1149
A
HOH
1151
9
HOH
HOH
1150
A
HOH
1152
9
HOH
HOH
1151
A
HOH
1153
9
HOH
HOH
1152
A
HOH
1154
9
HOH
HOH
1153
A
HOH
1155
9
HOH
HOH
1154
A
HOH
1156
9
HOH
HOH
1155
A
HOH
1157
9
HOH
HOH
1156
A
HOH
1158
9
HOH
HOH
1157
A
HOH
1159
9
HOH
HOH
1158
A
HOH
1160
9
HOH
HOH
1159
A
HOH
1161
9
HOH
HOH
1160
A
HOH
1162
9
HOH
HOH
1161
A
HOH
1163
9
HOH
HOH
1162
A
HOH
1164
9
HOH
HOH
1163
A
HOH
1165
9
HOH
HOH
1164
A
HOH
1166
9
HOH
HOH
1165
A
HOH
1167
9
HOH
HOH
1166
A
HOH
1168
9
HOH
HOH
1167
A
HOH
1169
9
HOH
HOH
1168
A
HOH
1170
9
HOH
HOH
1169
A
HOH
1171
9
HOH
HOH
1170
A
HOH
1172
9
HOH
HOH
1171
A
HOH
1173
9
HOH
HOH
1172
A
HOH
1174
9
HOH
HOH
1173
A
HOH
1175
9
HOH
HOH
1174
A
HOH
1176
9
HOH
HOH
1175
A
HOH
1177
9
HOH
HOH
1176
A
HOH
1178
9
HOH
HOH
1177
A
HOH
1179
9
HOH
HOH
1178
A
HOH
1180
9
HOH
HOH
1179
A
HOH
1181
9
HOH
HOH
1180
A
HOH
1182
9
HOH
HOH
1181
A
HOH
1183
9
HOH
HOH
1182
A
HOH
1184
9
HOH
HOH
1183
A
HOH
1185
9
HOH
HOH
1184
A
HOH
432
9
HOH
HOH
1185
A
HOH
301
9
HOH
HOH
301
B
HOH
302
9
HOH
HOH
302
B
HOH
303
9
HOH
HOH
303
B
HOH
304
9
HOH
HOH
304
B
HOH
305
9
HOH
HOH
305
B
HOH
306
9
HOH
HOH
306
B
HOH
307
9
HOH
HOH
307
B
HOH
308
9
HOH
HOH
308
B
HOH
309
9
HOH
HOH
309
B
HOH
310
9
HOH
HOH
310
B
HOH
311
9
HOH
HOH
311
B
HOH
312
9
HOH
HOH
312
B
HOH
313
9
HOH
HOH
313
B
HOH
314
9
HOH
HOH
314
B
HOH
315
9
HOH
HOH
315
B
HOH
316
9
HOH
HOH
316
B
HOH
317
9
HOH
HOH
317
B
HOH
318
9
HOH
HOH
318
B
HOH
319
9
HOH
HOH
319
B
HOH
320
9
HOH
HOH
320
B
HOH
321
9
HOH
HOH
321
B
HOH
322
9
HOH
HOH
322
B
HOH
323
9
HOH
HOH
323
B
HOH
324
9
HOH
HOH
324
B
HOH
325
9
HOH
HOH
325
B
HOH
1044
9
HOH
HOH
401
C
HOH
401
9
HOH
HOH
402
C
HOH
402
9
HOH
HOH
403
C
HOH
403
9
HOH
HOH
404
C
HOH
404
9
HOH
HOH
405
C
HOH
405
9
HOH
HOH
406
C
HOH
406
9
HOH
HOH
407
C
HOH
407
9
HOH
HOH
408
C
HOH
408
9
HOH
HOH
409
C
HOH
409
9
HOH
HOH
410
C
HOH
410
9
HOH
HOH
411
C
HOH
411
9
HOH
HOH
412
C
HOH
412
9
HOH
HOH
413
C
HOH
413
9
HOH
HOH
414
C
HOH
414
9
HOH
HOH
415
C
HOH
415
9
HOH
HOH
416
C
HOH
416
9
HOH
HOH
417
C
HOH
417
9
HOH
HOH
418
C
HOH
418
9
HOH
HOH
419
C
HOH
419
9
HOH
HOH
420
C
HOH
420
9
HOH
HOH
421
C
HOH
421
9
HOH
HOH
422
C
HOH
422
9
HOH
HOH
423
C
HOH
423
9
HOH
HOH
424
C
HOH
424
9
HOH
HOH
425
C
HOH
425
9
HOH
HOH
426
C
HOH
426
9
HOH
HOH
427
C
HOH
427
9
HOH
HOH
428
C
HOH
428
9
HOH
HOH
429
C
HOH
429
9
HOH
HOH
430
C
HOH
430
9
HOH
HOH
431
C
HOH
433
9
HOH
HOH
432
C
HOH
434
9
HOH
HOH
433
C
HOH
435
9
HOH
HOH
434
C
HOH
436
9
HOH
HOH
435
C
n
1
293
A
LEU
294
n
2
LEU
294
A
GLU
295
n
3
GLU
295
A
GLU
296
n
4
GLU
296
A
ALA
297
n
5
ALA
297
A
PRO
298
n
6
PRO
298
A
TRP
299
n
7
TRP
299
A
PRO
300
n
8
PRO
300
A
PRO
301
n
9
PRO
301
A
PRO
302
n
10
PRO
302
A
GLU
303
n
11
GLU
303
A
GLY
304
n
12
GLY
304
A
ALA
305
n
13
ALA
305
A
PHE
306
n
14
PHE
306
A
VAL
307
n
15
VAL
307
A
GLY
308
n
16
GLY
308
A
PHE
309
n
17
PHE
309
A
VAL
310
n
18
VAL
310
A
LEU
311
n
19
LEU
311
A
SER
312
n
20
SER
312
A
ARG
313
n
21
ARG
313
A
LYS
314
n
22
LYS
314
A
GLU
315
n
23
GLU
315
A
PRO
316
n
24
PRO
316
A
MET
317
n
25
MET
317
A
TRP
318
n
26
TRP
318
A
ALA
319
n
27
ALA
319
A
ASP
320
n
28
ASP
320
A
LEU
321
n
29
LEU
321
A
LEU
322
n
30
LEU
322
A
ALA
323
n
31
ALA
323
A
LEU
324
n
32
LEU
324
A
ALA
325
n
33
ALA
325
A
ALA
326
n
34
ALA
326
A
ALA
327
n
35
ALA
327
A
ARG
328
n
36
ARG
328
A
GLY
329
n
37
GLY
329
A
GLY
330
n
38
GLY
330
A
ARG
331
n
39
ARG
331
A
VAL
332
n
40
VAL
332
A
HIS
333
n
41
HIS
333
A
ARG
334
n
42
ARG
334
A
ALA
335
n
43
ALA
335
A
PRO
336
n
44
PRO
336
A
GLU
337
n
45
GLU
337
A
PRO
338
n
46
PRO
338
A
TYR
339
n
47
TYR
339
A
LYS
340
n
48
LYS
340
A
ALA
341
n
49
ALA
341
A
LEU
342
n
50
LEU
342
A
ARG
343
n
51
ARG
343
A
ASP
344
n
52
ASP
344
A
LEU
345
n
53
LEU
345
A
LYS
346
n
54
LYS
346
A
GLU
347
n
55
GLU
347
A
ALA
348
n
56
ALA
348
A
ARG
349
n
57
ARG
349
A
GLY
350
n
58
GLY
350
A
LEU
351
n
59
LEU
351
A
LEU
352
n
60
LEU
352
A
ALA
353
n
61
ALA
353
A
LYS
354
n
62
LYS
354
A
ASP
355
n
63
ASP
355
A
LEU
356
n
64
LEU
356
A
SER
357
n
65
SER
357
A
VAL
358
n
66
VAL
358
A
LEU
359
n
67
LEU
359
A
ALA
360
n
68
ALA
360
A
LEU
361
n
69
LEU
361
A
ARG
362
n
70
ARG
362
A
GLU
363
n
71
GLU
363
A
GLY
364
n
72
GLY
364
A
LEU
365
n
73
LEU
365
A
GLY
366
n
74
GLY
366
A
LEU
367
n
75
LEU
367
A
PRO
368
n
76
PRO
368
A
PRO
369
n
77
PRO
369
A
GLY
370
n
78
GLY
370
A
ASP
371
n
79
ASP
371
A
ASP
372
n
80
ASP
372
A
PRO
373
n
81
PRO
373
A
MET
374
n
82
MET
374
A
LEU
375
n
83
LEU
375
A
LEU
376
n
84
LEU
376
A
ALA
377
n
85
ALA
377
A
TYR
378
n
86
TYR
378
A
LEU
379
n
87
LEU
379
A
LEU
380
n
88
LEU
380
A
ASP
381
n
89
ASP
381
A
PRO
382
n
90
PRO
382
A
SER
383
n
91
SER
383
A
ASN
384
n
92
ASN
384
A
THR
385
n
93
THR
385
A
THR
386
n
94
THR
386
A
PRO
387
n
95
PRO
387
A
GLU
388
n
96
GLU
388
A
GLY
389
n
97
GLY
389
A
VAL
390
n
98
VAL
390
A
ALA
391
n
99
ALA
391
A
ARG
392
n
100
ARG
392
A
ARG
393
n
101
ARG
393
A
TYR
394
n
102
TYR
394
A
GLY
395
n
103
GLY
395
A
GLY
396
n
104
GLY
396
A
GLU
397
n
105
GLU
397
A
TRP
398
n
106
TRP
398
A
THR
399
n
107
THR
399
A
GLU
400
n
108
GLU
400
A
GLU
401
n
109
GLU
401
A
ALA
402
n
110
ALA
402
A
GLY
403
n
111
GLY
403
A
GLU
404
n
112
GLU
404
A
ARG
405
n
113
ARG
405
A
ALA
406
n
114
ALA
406
A
ALA
407
n
115
ALA
407
A
LEU
408
n
116
LEU
408
A
SER
409
n
117
SER
409
A
GLU
410
n
118
GLU
410
A
ARG
411
n
119
ARG
411
A
LEU
412
n
120
LEU
412
A
PHE
413
n
121
PHE
413
A
ALA
414
n
122
ALA
414
A
ASN
415
n
123
ASN
415
A
LEU
416
n
124
LEU
416
A
TRP
417
n
125
TRP
417
A
GLY
418
n
126
GLY
418
A
ARG
419
n
127
ARG
419
A
LEU
420
n
128
LEU
420
A
GLU
421
n
129
GLU
421
A
GLY
422
n
130
GLY
422
A
GLU
423
n
131
GLU
423
A
GLU
424
n
132
GLU
424
A
ARG
425
n
133
ARG
425
A
LEU
426
n
134
LEU
426
A
LEU
427
n
135
LEU
427
A
TRP
428
n
136
TRP
428
A
LEU
429
n
137
LEU
429
A
TYR
430
n
138
TYR
430
A
ARG
431
n
139
ARG
431
A
GLU
432
n
140
GLU
432
A
VAL
433
n
141
VAL
433
A
GLU
434
n
142
GLU
434
A
ARG
435
n
143
ARG
435
A
PRO
436
n
144
PRO
436
A
LEU
437
n
145
LEU
437
A
SER
438
n
146
SER
438
A
ALA
439
n
147
ALA
439
A
VAL
440
n
148
VAL
440
A
LEU
441
n
149
LEU
441
A
ALA
442
n
150
ALA
442
A
HIS
443
n
151
HIS
443
A
MET
444
n
152
MET
444
A
GLU
445
n
153
GLU
445
A
ALA
446
n
154
ALA
446
A
THR
447
n
155
THR
447
A
GLY
448
n
156
GLY
448
A
VAL
449
n
157
VAL
449
A
ARG
450
n
158
ARG
450
A
LEU
451
n
159
LEU
451
A
ASP
452
n
160
ASP
452
A
VAL
453
n
161
VAL
453
A
ALA
454
n
162
ALA
454
A
TYR
455
n
163
TYR
455
A
LEU
456
n
164
LEU
456
A
ARG
457
n
165
ARG
457
A
ALA
458
n
166
ALA
458
A
LEU
459
n
167
LEU
459
A
SER
460
n
168
SER
460
A
LEU
461
n
169
LEU
461
A
GLU
462
n
170
GLU
462
A
VAL
463
n
171
VAL
463
A
ALA
464
n
172
ALA
464
A
GLU
465
n
173
GLU
465
A
GLU
466
n
174
GLU
466
A
ILE
467
n
175
ILE
467
A
ALA
468
n
176
ALA
468
A
ARG
469
n
177
ARG
469
A
LEU
470
n
178
LEU
470
A
GLU
471
n
179
GLU
471
A
ALA
472
n
180
ALA
472
A
GLU
473
n
181
GLU
473
A
VAL
474
n
182
VAL
474
A
PHE
475
n
183
PHE
475
A
ARG
476
n
184
ARG
476
A
LEU
477
n
185
LEU
477
A
ALA
478
n
186
ALA
478
A
GLY
479
n
187
GLY
479
A
HIS
480
n
188
HIS
480
A
PRO
481
n
189
PRO
481
A
PHE
482
n
190
PHE
482
A
ASN
483
n
191
ASN
483
A
LEU
484
n
192
LEU
484
A
ASN
485
n
193
ASN
485
A
SER
486
n
194
SER
486
A
ARG
487
n
195
ARG
487
A
ASP
488
n
196
ASP
488
A
GLN
489
n
197
GLN
489
A
LEU
490
n
198
LEU
490
A
GLU
491
n
199
GLU
491
A
ARG
492
n
200
ARG
492
A
VAL
493
n
201
VAL
493
A
LEU
494
n
202
LEU
494
A
PHE
495
n
203
PHE
495
A
ASP
496
n
204
ASP
496
A
GLU
497
n
205
GLU
497
A
LEU
498
n
206
LEU
498
A
GLY
499
n
207
GLY
499
A
LEU
500
n
208
LEU
500
A
PRO
501
n
209
PRO
501
A
ALA
502
n
210
ALA
502
A
ILE
503
n
211
ILE
503
A
GLY
504
n
212
GLY
504
A
LYS
505
n
213
LYS
505
A
THR
506
n
214
THR
506
A
GLU
507
n
215
GLU
507
A
LYS
508
n
216
LYS
508
A
THR
509
n
217
THR
509
A
GLY
510
n
218
GLY
510
A
LYS
511
n
219
LYS
511
A
ARG
512
n
220
ARG
512
A
SER
513
n
221
SER
513
A
THR
514
n
222
THR
514
A
SER
515
n
223
SER
515
A
ALA
516
n
224
ALA
516
A
ALA
517
n
225
ALA
517
A
VAL
518
n
226
VAL
518
A
LEU
519
n
227
LEU
519
A
GLU
520
n
228
GLU
520
A
ALA
521
n
229
ALA
521
A
LEU
522
n
230
LEU
522
A
ARG
523
n
231
ARG
523
A
GLU
524
n
232
GLU
524
A
ALA
525
n
233
ALA
525
A
HIS
526
n
234
HIS
526
A
PRO
527
n
235
PRO
527
A
ILE
528
n
236
ILE
528
A
VAL
529
n
237
VAL
529
A
GLU
530
n
238
GLU
530
A
LYS
531
n
239
LYS
531
A
ILE
532
n
240
ILE
532
A
LEU
533
n
241
LEU
533
A
GLN
534
n
242
GLN
534
A
TYR
535
n
243
TYR
535
A
ARG
536
n
244
ARG
536
A
GLU
537
n
245
GLU
537
A
LEU
538
n
246
LEU
538
A
THR
539
n
247
THR
539
A
LYS
540
n
248
LYS
540
A
LEU
541
n
249
LEU
541
A
LYS
542
n
250
LYS
542
A
SER
543
n
251
SER
543
A
THR
544
n
252
THR
544
A
TYR
545
n
253
TYR
545
A
ILE
546
n
254
ILE
546
A
ASP
547
n
255
ASP
547
A
PRO
548
n
256
PRO
548
A
LEU
549
n
257
LEU
549
A
PRO
550
n
258
PRO
550
A
ASP
551
n
259
ASP
551
A
LEU
552
n
260
LEU
552
A
ILE
553
n
261
ILE
553
A
HIS
554
n
262
HIS
554
A
PRO
555
n
263
PRO
555
A
ARG
556
n
264
ARG
556
A
THR
557
n
265
THR
557
A
GLY
558
n
266
GLY
558
A
ARG
559
n
267
ARG
559
A
LEU
560
n
268
LEU
560
A
HIS
561
n
269
HIS
561
A
THR
562
n
270
THR
562
A
ARG
563
n
271
ARG
563
A
PHE
564
n
272
PHE
564
A
ASN
565
n
273
ASN
565
A
GLN
566
n
274
GLN
566
A
THR
567
n
275
THR
567
A
ALA
568
n
276
ALA
568
A
THR
569
n
277
THR
569
A
ALA
570
n
278
ALA
570
A
THR
571
n
279
THR
571
A
GLY
572
n
280
GLY
572
A
ARG
573
n
281
ARG
573
A
LEU
574
n
282
LEU
574
A
SER
575
n
283
SER
575
A
SER
576
n
284
SER
576
A
SER
577
n
285
SER
577
A
ASP
578
n
286
ASP
578
A
PRO
579
n
287
PRO
579
A
ASN
580
n
288
ASN
580
A
LEU
581
n
289
LEU
581
A
GLN
582
n
290
GLN
582
A
ASN
583
n
291
ASN
583
A
ILE
584
n
292
ILE
584
A
PRO
585
n
293
PRO
585
A
VAL
586
n
294
VAL
586
A
ARG
587
n
295
ARG
587
A
THR
588
n
296
THR
588
A
PRO
589
n
297
PRO
589
A
LEU
590
n
298
LEU
590
A
GLY
591
n
299
GLY
591
A
GLN
592
n
300
GLN
592
A
ARG
593
n
301
ARG
593
A
ILE
594
n
302
ILE
594
A
ARG
595
n
303
ARG
595
A
ARG
596
n
304
ARG
596
A
ALA
597
n
305
ALA
597
A
PHE
598
n
306
PHE
598
A
ILE
599
n
307
ILE
599
A
ALA
600
n
308
ALA
600
A
GLU
601
n
309
GLU
601
A
GLU
602
n
310
GLU
602
A
GLY
603
n
311
GLY
603
A
TRP
604
n
312
TRP
604
A
LEU
605
n
313
LEU
605
A
LEU
606
n
314
LEU
606
A
VAL
607
n
315
VAL
607
A
ALA
608
n
316
ALA
608
A
LEU
609
n
317
LEU
609
A
ASP
610
n
318
ASP
610
A
TYR
611
n
319
TYR
611
A
SER
612
n
320
SER
612
A
GLN
613
n
321
GLN
613
A
ILE
614
n
322
ILE
614
A
GLU
615
n
323
GLU
615
A
LEU
616
n
324
LEU
616
A
ARG
617
n
325
ARG
617
A
VAL
618
n
326
VAL
618
A
LEU
619
n
327
LEU
619
A
ALA
620
n
328
ALA
620
A
HIS
621
n
329
HIS
621
A
LEU
622
n
330
LEU
622
A
SER
623
n
331
SER
623
A
GLY
624
n
332
GLY
624
A
ASP
625
n
333
ASP
625
A
GLU
626
n
334
GLU
626
A
ASN
627
n
335
ASN
627
A
LEU
628
n
336
LEU
628
A
ILE
629
n
337
ILE
629
A
ARG
630
n
338
ARG
630
A
VAL
631
n
339
VAL
631
A
PHE
632
n
340
PHE
632
A
GLN
633
n
341
GLN
633
A
GLU
634
n
342
GLU
634
A
GLY
635
n
343
GLY
635
A
ARG
636
n
344
ARG
636
A
ASP
637
n
345
ASP
637
A
ILE
638
n
346
ILE
638
A
HIS
639
n
347
HIS
639
A
THR
640
n
348
THR
640
A
GLU
641
n
349
GLU
641
A
THR
642
n
350
THR
642
A
ALA
643
n
351
ALA
643
A
SER
644
n
352
SER
644
A
TRP
645
n
353
TRP
645
A
MET
646
n
354
MET
646
A
PHE
647
n
355
PHE
647
A
GLY
648
n
356
GLY
648
A
VAL
649
n
357
VAL
649
A
PRO
650
n
358
PRO
650
A
ARG
651
n
359
ARG
651
A
GLU
652
n
360
GLU
652
A
ALA
653
n
361
ALA
653
A
VAL
654
n
362
VAL
654
A
ASP
655
n
363
ASP
655
A
PRO
656
n
364
PRO
656
A
LEU
657
n
365
LEU
657
A
MET
658
n
366
MET
658
A
ARG
659
n
367
ARG
659
A
ARG
660
n
368
ARG
660
A
ALA
661
n
369
ALA
661
A
ALA
662
n
370
ALA
662
A
LYS
663
n
371
LYS
663
A
THR
664
n
372
THR
664
A
ILE
665
n
373
ILE
665
A
ASN
666
n
374
ASN
666
A
PHE
667
n
375
PHE
667
A
GLY
668
n
376
GLY
668
A
VAL
669
n
377
VAL
669
A
LEU
670
n
378
LEU
670
A
TYR
671
n
379
TYR
671
A
GLY
672
n
380
GLY
672
A
MET
673
n
381
MET
673
A
SER
674
n
382
SER
674
A
ALA
675
n
383
ALA
675
A
HIS
676
n
384
HIS
676
A
ARG
677
n
385
ARG
677
A
LEU
678
n
386
LEU
678
A
SER
679
n
387
SER
679
A
GLN
680
n
388
GLN
680
A
GLU
681
n
389
GLU
681
A
LEU
682
n
390
LEU
682
A
ALA
683
n
391
ALA
683
A
ILE
684
n
392
ILE
684
A
PRO
685
n
393
PRO
685
A
TYR
686
n
394
TYR
686
A
GLU
687
n
395
GLU
687
A
GLU
688
n
396
GLU
688
A
ALA
689
n
397
ALA
689
A
GLN
690
n
398
GLN
690
A
ALA
691
n
399
ALA
691
A
PHE
692
n
400
PHE
692
A
ILE
693
n
401
ILE
693
A
GLU
694
n
402
GLU
694
A
ARG
695
n
403
ARG
695
A
TYR
696
n
404
TYR
696
A
PHE
697
n
405
PHE
697
A
GLN
698
n
406
GLN
698
A
SER
699
n
407
SER
699
A
PHE
700
n
408
PHE
700
A
PRO
701
n
409
PRO
701
A
LYS
702
n
410
LYS
702
A
VAL
703
n
411
VAL
703
A
ARG
704
n
412
ARG
704
A
ALA
705
n
413
ALA
705
A
TRP
706
n
414
TRP
706
A
ILE
707
n
415
ILE
707
A
GLU
708
n
416
GLU
708
A
LYS
709
n
417
LYS
709
A
THR
710
n
418
THR
710
A
LEU
711
n
419
LEU
711
A
GLU
712
n
420
GLU
712
A
GLU
713
n
421
GLU
713
A
GLY
714
n
422
GLY
714
A
ARG
715
n
423
ARG
715
A
ARG
716
n
424
ARG
716
A
ARG
717
n
425
ARG
717
A
GLY
718
n
426
GLY
718
A
TYR
719
n
427
TYR
719
A
VAL
720
n
428
VAL
720
A
GLU
721
n
429
GLU
721
A
THR
722
n
430
THR
722
A
LEU
723
n
431
LEU
723
A
PHE
724
n
432
PHE
724
A
GLY
725
n
433
GLY
725
A
ARG
726
n
434
ARG
726
A
ARG
727
n
435
ARG
727
A
ARG
728
n
436
ARG
728
A
TYR
729
n
437
TYR
729
A
VAL
730
n
438
VAL
730
A
PRO
731
n
439
PRO
731
A
ASP
732
n
440
ASP
732
A
LEU
733
n
441
LEU
733
A
GLU
734
n
442
GLU
734
A
ALA
735
n
443
ALA
735
A
ARG
736
n
444
ARG
736
A
VAL
737
n
445
VAL
737
A
LYS
738
n
446
LYS
738
A
SER
739
n
447
SER
739
A
VAL
740
n
448
VAL
740
A
ARG
741
n
449
ARG
741
A
GLU
742
n
450
GLU
742
A
ALA
743
n
451
ALA
743
A
ALA
744
n
452
ALA
744
A
GLU
745
n
453
GLU
745
A
ARG
746
n
454
ARG
746
A
MET
747
n
455
MET
747
A
ALA
748
n
456
ALA
748
A
PHE
749
n
457
PHE
749
A
ASN
750
n
458
ASN
750
A
MET
751
n
459
MET
751
A
PRO
752
n
460
PRO
752
A
VAL
753
n
461
VAL
753
A
GLN
754
n
462
GLN
754
A
GLY
755
n
463
GLY
755
A
THR
756
n
464
THR
756
A
ALA
757
n
465
ALA
757
A
ALA
758
n
466
ALA
758
A
ASP
759
n
467
ASP
759
A
LEU
760
n
468
LEU
760
A
MET
761
n
469
MET
761
A
LYS
762
n
470
LYS
762
A
LEU
763
n
471
LEU
763
A
ALA
764
n
472
ALA
764
A
MET
765
n
473
MET
765
A
VAL
766
n
474
VAL
766
A
LYS
767
n
475
LYS
767
A
LEU
768
n
476
LEU
768
A
PHE
769
n
477
PHE
769
A
PRO
770
n
478
PRO
770
A
ARG
771
n
479
ARG
771
A
LEU
772
n
480
LEU
772
A
GLU
773
n
481
GLU
773
A
GLU
774
n
482
GLU
774
A
MET
775
n
483
MET
775
A
GLY
776
n
484
GLY
776
A
ALA
777
n
485
ALA
777
A
ARG
778
n
486
ARG
778
A
MET
779
n
487
MET
779
A
LEU
780
n
488
LEU
780
A
LEU
781
n
489
LEU
781
A
GLN
782
n
490
GLN
782
A
VAL
783
n
491
VAL
783
A
HIS
784
n
492
HIS
784
A
ASP
785
n
493
ASP
785
A
GLU
786
n
494
GLU
786
A
LEU
787
n
495
LEU
787
A
VAL
788
n
496
VAL
788
A
LEU
789
n
497
LEU
789
A
GLU
790
n
498
GLU
790
A
ALA
791
n
499
ALA
791
A
PRO
792
n
500
PRO
792
A
LYS
793
n
501
LYS
793
A
GLU
794
n
502
GLU
794
A
ARG
795
n
503
ARG
795
A
ALA
796
n
504
ALA
796
A
GLU
797
n
505
GLU
797
A
ALA
798
n
506
ALA
798
A
VAL
799
n
507
VAL
799
A
ALA
800
n
508
ALA
800
A
ARG
801
n
509
ARG
801
A
LEU
802
n
510
LEU
802
A
ALA
803
n
511
ALA
803
A
LYS
804
n
512
LYS
804
A
GLU
805
n
513
GLU
805
A
VAL
806
n
514
VAL
806
A
MET
807
n
515
MET
807
A
GLU
808
n
516
GLU
808
A
GLY
809
n
517
GLY
809
A
VAL
810
n
518
VAL
810
A
TYR
811
n
519
TYR
811
A
PRO
812
n
520
PRO
812
A
LEU
813
n
521
LEU
813
A
ALA
814
n
522
ALA
814
A
VAL
815
n
523
VAL
815
A
PRO
816
n
524
PRO
816
A
LEU
817
n
525
LEU
817
A
GLU
818
n
526
GLU
818
A
VAL
819
n
527
VAL
819
A
GLU
820
n
528
GLU
820
A
VAL
821
n
529
VAL
821
A
GLY
822
n
530
GLY
822
A
ILE
823
n
531
ILE
823
A
GLY
824
n
532
GLY
824
A
GLU
825
n
533
GLU
825
A
ASP
826
n
534
ASP
826
A
TRP
827
n
535
TRP
827
A
LEU
828
n
536
LEU
828
A
SER
829
n
537
SER
829
A
ALA
830
n
538
ALA
830
A
LYS
831
n
539
LYS
831
A
GLU
832
n
540
GLU
832
A
DG
101
n
1
DG
101
B
DA
102
n
2
DA
102
B
DC
103
n
3
DC
103
B
DC
104
n
4
DC
104
B
DA
105
n
5
DA
105
B
DC
106
n
6
DC
106
B
DG
107
n
7
DG
107
B
DG
108
n
8
DG
108
B
DC
109
n
9
DC
109
B
DG
110
n
10
DG
110
B
DC
111
n
11
DC
111
B
DOC
112
n
12
DOC
112
B
DA
201
n
1
DA
201
C
DA
202
n
2
DA
202
C
DA
203
n
3
DA
203
C
DA
204
n
4
DA
204
C
DG
205
n
5
DG
205
C
DG
206
n
6
DG
206
C
DC
207
n
7
DC
207
C
DG
208
n
8
DG
208
C
DC
209
n
9
DC
209
C
DC
210
n
10
DC
210
C
DG
211
n
11
DG
211
C
DT
212
n
12
DT
212
C
DG
213
n
13
DG
213
C
DG
214
n
14
DG
214
C
DT
215
n
15
DT
215
C
DC
216
n
16
DC
216
C
0.5706
-0.2335
-0.1565
2.7393
-0.1224
1.7269
-0.0934
0.0796
-0.3090
-0.4571
-0.0192
-0.4644
0.3708
0.1280
0.0910
0.3305
-0.0432
0.1020
0.2089
-0.0369
0.3442
refined
39.0974
-41.1404
-18.5373
X-RAY DIFFRACTION
1.3109
0.7712
0.2856
1.2708
0.6166
1.8219
0.0067
-0.1316
0.0992
-0.0141
-0.0318
0.0802
-0.2960
0.0235
0.0232
0.1913
-0.0100
0.0099
0.1402
0.0088
0.1889
refined
36.1531
-11.0711
1.4402
X-RAY DIFFRACTION
1.5630
0.6092
-0.6030
0.6235
-0.1462
2.4637
-0.0079
-0.1489
0.4405
-0.0291
0.0109
0.2710
-0.6715
-0.6073
-0.0346
0.3585
0.1116
-0.0333
0.3959
-0.0077
0.2777
refined
11.5243
-13.3665
-8.4566
X-RAY DIFFRACTION
1.5049
0.5879
-0.3128
1.0728
-0.2790
2.0908
-0.0919
0.1020
-0.0170
-0.1239
0.1035
0.1298
-0.0895
-0.5012
-0.0156
0.1880
-0.0003
-0.0206
0.2687
0.0019
0.1808
refined
17.3218
-24.6346
-13.1420
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resseq 294:452)
X-RAY DIFFRACTION
2
chain 'A' and (resseq 453:603)
X-RAY DIFFRACTION
3
chain 'A' and (resseq 604:685)
X-RAY DIFFRACTION
4
chain 'A' and (resseq 686:832)
author_and_software_defined_assembly
PISA
3
trimeric
9600
-26
24420
A
ASP
610
A
OD1
ASP
318
1_555
A
MG
902
E
MG
MG
1_555
A
TYR
611
A
O
TYR
319
1_555
85.7
A
ASP
610
A
OD1
ASP
318
1_555
A
MG
902
E
MG
MG
1_555
A
ASP
785
A
OD2
ASP
493
1_555
87.0
A
TYR
611
A
O
TYR
319
1_555
A
MG
902
E
MG
MG
1_555
A
ASP
785
A
OD2
ASP
493
1_555
87.4
A
ASP
610
A
OD1
ASP
318
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O2G
0R5
1_555
91.9
A
TYR
611
A
O
TYR
319
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O2G
0R5
1_555
99.1
A
ASP
785
A
OD2
ASP
493
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O2G
0R5
1_555
173.3
A
ASP
610
A
OD1
ASP
318
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O2B
0R5
1_555
176.2
A
TYR
611
A
O
TYR
319
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O2B
0R5
1_555
96.5
A
ASP
785
A
OD2
ASP
493
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O2B
0R5
1_555
89.9
A
0R5
901
D
O2G
0R5
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O2B
0R5
1_555
90.9
A
ASP
610
A
OD1
ASP
318
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O1A
0R5
1_555
92.0
A
TYR
611
A
O
TYR
319
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O1A
0R5
1_555
171.8
A
ASP
785
A
OD2
ASP
493
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O1A
0R5
1_555
84.7
A
0R5
901
D
O2G
0R5
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O1A
0R5
1_555
88.8
A
0R5
901
D
O2B
0R5
1_555
A
MG
902
E
MG
MG
1_555
A
0R5
901
D
O1A
0R5
1_555
85.5
A
ASP
610
A
OD2
ASP
318
1_555
A
MG
903
F
MG
MG
1_555
A
ASP
785
A
OD1
ASP
493
1_555
108.0
A
ASP
610
A
OD2
ASP
318
1_555
A
MG
903
F
MG
MG
1_555
A
0R5
901
D
O1A
0R5
1_555
104.5
A
ASP
785
A
OD1
ASP
493
1_555
A
MG
903
F
MG
MG
1_555
A
0R5
901
D
O1A
0R5
1_555
86.0
A
ASP
610
A
OD2
ASP
318
1_555
A
MG
903
F
MG
MG
1_555
A
HOH
1001
U
O
HOH
1_555
97.1
A
ASP
785
A
OD1
ASP
493
1_555
A
MG
903
F
MG
MG
1_555
A
HOH
1001
U
O
HOH
1_555
94.0
A
0R5
901
D
O1A
0R5
1_555
A
MG
903
F
MG
MG
1_555
A
HOH
1001
U
O
HOH
1_555
157.3
A
ASP
610
A
OD2
ASP
318
1_555
A
MG
903
F
MG
MG
1_555
A
HOH
1002
U
O
HOH
1_555
94.2
A
ASP
785
A
OD1
ASP
493
1_555
A
MG
903
F
MG
MG
1_555
A
HOH
1002
U
O
HOH
1_555
156.8
A
0R5
901
D
O1A
0R5
1_555
A
MG
903
F
MG
MG
1_555
A
HOH
1002
U
O
HOH
1_555
82.1
A
HOH
1001
U
O
HOH
1_555
A
MG
903
F
MG
MG
1_555
A
HOH
1002
U
O
HOH
1_555
89.5
C
HOH
432
W
O
HOH
1_555
C
MG
302
T
MG
MG
1_555
C
HOH
433
W
O
HOH
1_555
111.0
C
HOH
432
W
O
HOH
1_555
C
MG
302
T
MG
MG
1_555
C
HOH
434
W
O
HOH
1_555
119.4
C
HOH
433
W
O
HOH
1_555
C
MG
302
T
MG
MG
1_555
C
HOH
434
W
O
HOH
1_555
95.0
C
HOH
432
W
O
HOH
1_555
C
MG
302
T
MG
MG
1_555
C
HOH
435
W
O
HOH
1_555
106.5
C
HOH
433
W
O
HOH
1_555
C
MG
302
T
MG
MG
1_555
C
HOH
435
W
O
HOH
1_555
106.6
C
HOH
434
W
O
HOH
1_555
C
MG
302
T
MG
MG
1_555
C
HOH
435
W
O
HOH
1_555
117.2
B
DOC
112
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
B
DOC
12
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
297
A
N
ALA
5
A
O
VAL
332
A
O
VAL
40
A
O
HIS
333
A
O
HIS
41
A
N
ALA
326
A
N
ALA
34
A
O
ALA
325
A
O
ALA
33
A
N
GLY
308
A
N
GLY
16
A
N
ARG
450
A
N
ARG
158
A
O
ILE
599
A
O
ILE
307
A
N
ARG
563
A
N
ARG
271
A
O
SER
577
A
O
SER
285
A
N
LEU
781
A
N
LEU
489
A
O
VAL
788
A
O
VAL
496
A
O
LEU
789
A
O
LEU
497
A
N
VAL
607
A
N
VAL
315
A
N
ASP
610
A
N
ASP
318
A
O
GLU
820
A
O
GLU
528
A
N
VAL
720
A
N
VAL
428
A
O
ARG
728
A
O
ARG
436
1
A
HOH
1147
U
HOH
1
A
CG
LYS
346
A
CG
LYS
54
0
Y
1
A
CD
LYS
346
A
CD
LYS
54
0
Y
1
A
CE
LYS
346
A
CE
LYS
54
0
Y
1
A
NZ
LYS
346
A
NZ
LYS
54
0
Y
1
A
ALA
293
A
ALA
1
1
Y
1
4.85
0.30
108.30
113.15
B
B
B
O4'
C1'
N9
DG
DG
DG
108
108
108
N
1
4.71
0.30
108.30
113.01
B
B
B
O4'
C1'
N1
DC
DC
DC
109
109
109
N
1
-11.00
1.20
119.70
108.70
B
B
B
C3'
O3'
P
DC
DC
DOC
111
111
112
Y
1
2.60
0.30
108.30
110.90
C
C
C
O4'
C1'
N9
DA
DA
DA
201
201
201
N
1
2.37
0.30
108.30
110.67
C
C
C
O4'
C1'
N9
DA
DA
DA
202
202
202
N
1
1.85
0.30
108.30
110.15
C
C
C
O4'
C1'
N9
DG
DG
DG
205
205
205
N
1
2.31
0.30
108.30
110.61
C
C
C
O4'
C1'
N1
DC
DC
DC
207
207
207
N
1
-4.70
0.70
108.00
103.30
C
C
C
O4'
C1'
N1
DT
DT
DT
212
212
212
N
1
-6.90
1.00
110.10
103.20
C
C
C
C1'
O4'
C4'
DG
DG
DG
214
214
214
N
1
4.04
0.30
108.30
112.34
C
C
C
O4'
C1'
N9
DG
DG
DG
214
214
214
N
1
1.99
0.30
108.30
110.29
C
C
C
O4'
C1'
N1
DC
DC
DC
216
216
216
N
1
A
A
O
O
HOH
HOH
1162
1162
2.19
1_555
6_554
1
A
ASP
381
-166.71
104.78
1
A
THR
399
-105.76
-164.72
1
A
VAL
433
-120.59
-70.59
1
A
TYR
545
-126.55
-53.92
1
A
VAL
586
-159.75
-17.35
1
A
ALA
653
-103.89
42.86
1
A
HIS
784
74.52
-66.72
1
A
TYR
811
-169.88
99.73
7.6072
-0.0000
0.0000
7.6072
0.0000
3.8507
0.2088
0.1602
0.1627
2.200
47.138
1598
31776
31776
5.03
99.22
0.31
1
isotropic and tls
2.00
MOLECULAR REPLACEMENT
20.02
0.90
1.11
3OJS
ML
FLAT BULK SOLVENT MODEL
39.371
0.372
2.200
47.138
245
5211
111
569
4286
0.007
5135
1.129
7056
16.647
1990
0.070
767
0.005
816
0.2984
0.2399
2.2710
119
2538
92.00
0.2727
0.2029
2.3522
139
2723
100.00
0.2712
0.1965
2.4464
123
2750
100.00
0.2725
0.1900
2.5577
151
2721
100.00
0.2589
0.1656
2.6925
148
2740
100.00
0.2223
0.1670
2.8612
151
2748
100.00
0.2220
0.1566
3.0821
142
2757
100.00
0.2033
0.1539
3.3922
148
2761
100.00
0.1860
0.1452
3.8828
162
2745
100.00
0.1736
0.1347
4.8911
152
2802
100.00
0.1893
0.1609
47.1486
163
2893
100.00
2.19
50
4ELT
32014
32014
0
-3
1
98.5
0.802
2.19
2.32
2.06
1
90.6
data scaling
XDS
model building
PHENIX
(phenix.refine: 1.7.2_869)
refinement
PHENIX
(phenix.refine: 1.7.2_869)
data reduction
XDS
phasing
PHENIX
1.7.2_869
Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
7
N
N
6
N
N
6
N
N
7
N
N
6
N
N
6
N
N
6
N
N
7
N
N
6
N
N
8
N
N
6
N
N
6
N
N
5
N
N
9
N
N
9
N
N
9
N
N
A
GLU
337
A
GLU
45
HELX_P
A
LEU
342
A
LEU
50
1
1
6
A
ARG
343
A
ARG
51
HELX_P
A
LEU
345
A
LEU
53
5
2
3
A
LEU
352
A
LEU
60
HELX_P
A
GLU
363
A
GLU
71
1
3
12
A
ASP
372
A
ASP
80
HELX_P
A
ASP
381
A
ASP
89
1
4
10
A
THR
386
A
THR
94
HELX_P
A
GLY
395
A
GLY
103
1
5
10
A
GLU
401
A
GLU
109
HELX_P
A
LEU
420
A
LEU
128
1
6
20
A
GLU
423
A
GLU
131
HELX_P
A
VAL
433
A
VAL
141
1
7
11
A
VAL
433
A
VAL
141
HELX_P
A
GLY
448
A
GLY
156
1
8
16
A
ASP
452
A
ASP
160
HELX_P
A
GLY
479
A
GLY
187
1
9
28
A
SER
486
A
SER
194
HELX_P
A
ASP
496
A
ASP
204
1
10
11
A
SER
515
A
SER
223
HELX_P
A
LEU
522
A
LEU
230
1
11
8
A
PRO
527
A
PRO
235
HELX_P
A
TYR
545
A
TYR
253
1
12
19
A
PRO
548
A
PRO
256
HELX_P
A
ILE
553
A
ILE
261
5
13
6
A
THR
588
A
THR
296
HELX_P
A
ARG
596
A
ARG
304
1
14
9
A
GLN
613
A
GLN
321
HELX_P
A
GLY
624
A
GLY
332
1
15
12
A
ASP
625
A
ASP
333
HELX_P
A
GLU
634
A
GLU
342
1
16
10
A
ASP
637
A
ASP
345
HELX_P
A
GLY
648
A
GLY
356
1
17
12
A
PRO
650
A
PRO
358
HELX_P
A
VAL
654
A
VAL
362
5
18
5
A
ASP
655
A
ASP
363
HELX_P
A
TYR
671
A
TYR
379
1
19
17
A
SER
674
A
SER
382
HELX_P
A
ALA
683
A
ALA
391
1
20
10
A
PRO
685
A
PRO
393
HELX_P
A
PHE
700
A
PHE
408
1
21
16
A
PRO
701
A
PRO
409
HELX_P
A
GLY
718
A
GLY
426
1
22
18
A
PRO
731
A
PRO
439
HELX_P
A
ALA
735
A
ALA
443
5
23
5
A
VAL
737
A
VAL
445
HELX_P
A
GLY
776
A
GLY
484
1
24
40
A
ARG
795
A
ARG
503
HELX_P
A
GLY
809
A
GLY
517
1
25
15
A
ASP
826
A
ASP
534
HELX_P
A
LYS
831
A
LYS
539
1
26
6
covale
1.608
both
B
DC
111
B
O3'
DC
11
1_555
B
DOC
112
B
P
DOC
12
1_555
metalc
2.194
A
ASP
610
A
OD1
ASP
318
1_555
A
MG
902
E
MG
MG
1_555
metalc
2.502
A
ASP
610
A
OD2
ASP
318
1_555
A
MG
903
F
MG
MG
1_555
metalc
2.124
A
TYR
611
A
O
TYR
319
1_555
A
MG
902
E
MG
MG
1_555
metalc
2.152
A
ASP
785
A
OD2
ASP
493
1_555
A
MG
902
E
MG
MG
1_555
metalc
2.181
A
ASP
785
A
OD1
ASP
493
1_555
A
MG
903
F
MG
MG
1_555
metalc
1.985
A
0R5
901
D
O2G
0R5
1_555
A
MG
902
E
MG
MG
1_555
metalc
2.203
A
0R5
901
D
O2B
0R5
1_555
A
MG
902
E
MG
MG
1_555
metalc
2.229
A
0R5
901
D
O1A
0R5
1_555
A
MG
902
E
MG
MG
1_555
metalc
2.380
A
0R5
901
D
O1A
0R5
1_555
A
MG
903
F
MG
MG
1_555
metalc
2.534
A
MG
903
F
MG
MG
1_555
A
HOH
1001
U
O
HOH
1_555
metalc
2.761
A
MG
903
F
MG
MG
1_555
A
HOH
1002
U
O
HOH
1_555
metalc
2.053
C
MG
302
T
MG
MG
1_555
C
HOH
432
W
O
HOH
1_555
metalc
2.154
C
MG
302
T
MG
MG
1_555
C
HOH
433
W
O
HOH
1_555
metalc
2.162
C
MG
302
T
MG
MG
1_555
C
HOH
434
W
O
HOH
1_555
metalc
2.146
C
MG
302
T
MG
MG
1_555
C
HOH
435
W
O
HOH
1_555
hydrog
WATSON-CRICK
B
DG
101
B
N1
DG
1
1_555
C
DC
216
C
N3
DC
16
1_555
hydrog
WATSON-CRICK
B
DG
101
B
N2
DG
1
1_555
C
DC
216
C
O2
DC
16
1_555
hydrog
WATSON-CRICK
B
DG
101
B
O6
DG
1
1_555
C
DC
216
C
N4
DC
16
1_555
hydrog
WATSON-CRICK
B
DA
102
B
N1
DA
2
1_555
C
DT
215
C
N3
DT
15
1_555
hydrog
WATSON-CRICK
B
DA
102
B
N6
DA
2
1_555
C
DT
215
C
O4
DT
15
1_555
hydrog
WATSON-CRICK
B
DC
103
B
N3
DC
3
1_555
C
DG
214
C
N1
DG
14
1_555
hydrog
WATSON-CRICK
B
DC
103
B
N4
DC
3
1_555
C
DG
214
C
O6
DG
14
1_555
hydrog
WATSON-CRICK
B
DC
103
B
O2
DC
3
1_555
C
DG
214
C
N2
DG
14
1_555
hydrog
WATSON-CRICK
B
DC
104
B
N3
DC
4
1_555
C
DG
213
C
N1
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
104
B
N4
DC
4
1_555
C
DG
213
C
O6
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
104
B
O2
DC
4
1_555
C
DG
213
C
N2
DG
13
1_555
hydrog
WATSON-CRICK
B
DA
105
B
N1
DA
5
1_555
C
DT
212
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
105
B
N6
DA
5
1_555
C
DT
212
C
O4
DT
12
1_555
hydrog
WATSON-CRICK
B
DC
106
B
N3
DC
6
1_555
C
DG
211
C
N1
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
106
B
N4
DC
6
1_555
C
DG
211
C
O6
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
106
B
O2
DC
6
1_555
C
DG
211
C
N2
DG
11
1_555
hydrog
WATSON-CRICK
B
DG
107
B
N1
DG
7
1_555
C
DC
210
C
N3
DC
10
1_555
hydrog
WATSON-CRICK
B
DG
107
B
N2
DG
7
1_555
C
DC
210
C
O2
DC
10
1_555
hydrog
WATSON-CRICK
B
DG
107
B
O6
DG
7
1_555
C
DC
210
C
N4
DC
10
1_555
hydrog
WATSON-CRICK
B
DG
108
B
N1
DG
8
1_555
C
DC
209
C
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
108
B
N2
DG
8
1_555
C
DC
209
C
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
108
B
O6
DG
8
1_555
C
DC
209
C
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DC
109
B
N3
DC
9
1_555
C
DG
208
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
109
B
N4
DC
9
1_555
C
DG
208
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
109
B
O2
DC
9
1_555
C
DG
208
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DG
110
B
N1
DG
10
1_555
C
DC
207
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
110
B
N2
DG
10
1_555
C
DC
207
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
110
B
O6
DG
10
1_555
C
DC
207
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DC
111
B
N3
DC
11
1_555
C
DG
206
C
N1
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
111
B
N4
DC
11
1_555
C
DG
206
C
O6
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
111
B
O2
DC
11
1_555
C
DG
206
C
N2
DG
6
1_555
hydrog
WATSON-CRICK
B
DOC
112
B
N3
DOC
12
1_555
C
DG
205
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DOC
112
B
N4
DOC
12
1_555
C
DG
205
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DOC
112
B
O2
DOC
12
1_555
C
DG
205
C
N2
DG
5
1_555
TRANSFERASE/DNA
DNA polymerase, modified nucleotides, A family, DNA synthesis, rigid linker, non-natural nucleotide, TRANSFERASE-DNA complex
A
TRP
299
A
TRP
7
1
A
PRO
300
A
PRO
8
0.79
A
ASP
578
A
ASP
286
1
A
PRO
579
A
PRO
287
-1.53
DPO1_THEAQ
UNP
1
293
P19821
ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD
PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD
VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI
LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS
QIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF
IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL
EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE
4ELT
PDB
2
1
4ELT
GACCACGGCGCC
4ELT
PDB
3
1
4ELT
AAAAGGCGCCGTGGTC
293
832
4ELT
293
832
P19821
A
1
1
540
101
112
4ELT
101
112
4ELT
B
2
1
12
201
216
4ELT
201
216
4ELT
C
3
1
16
4
2
2
4
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
295
A
GLU
3
A
ALA
297
A
ALA
5
A
ARG
331
A
ARG
39
A
ARG
334
A
ARG
42
A
LEU
321
A
LEU
29
A
ALA
327
A
ALA
35
A
PHE
306
A
PHE
14
A
LEU
311
A
LEU
19
A
ARG
450
A
ARG
158
A
LEU
451
A
LEU
159
A
PHE
598
A
PHE
306
A
ILE
599
A
ILE
307
A
ARG
563
A
ARG
271
A
ASN
565
A
ASN
273
A
SER
575
A
SER
283
A
SER
577
A
SER
285
A
ARG
778
A
ARG
486
A
GLN
782
A
GLN
490
A
GLU
786
A
GLU
494
A
PRO
792
A
PRO
500
A
TRP
604
A
TRP
312
A
TYR
611
A
TYR
319
A
VAL
819
A
VAL
527
A
GLY
824
A
GLY
532
A
TYR
719
A
TYR
427
A
GLU
721
A
GLU
429
A
ARG
727
A
ARG
435
A
TYR
729
A
TYR
437
BINDING SITE FOR RESIDUE 0R5 A 901
A
0R5
901
Software
27
BINDING SITE FOR RESIDUE MG A 902
A
MG
902
Software
5
BINDING SITE FOR RESIDUE MG A 903
A
MG
903
Software
7
BINDING SITE FOR RESIDUE GOL A 904
A
GOL
904
Software
6
BINDING SITE FOR RESIDUE ACT A 905
A
ACT
905
Software
5
BINDING SITE FOR RESIDUE GOL A 906
A
GOL
906
Software
4
BINDING SITE FOR RESIDUE GOL A 907
A
GOL
907
Software
9
BINDING SITE FOR RESIDUE ACT A 908
A
ACT
908
Software
3
BINDING SITE FOR RESIDUE GOL A 909
A
GOL
909
Software
7
BINDING SITE FOR RESIDUE GOL A 910
A
GOL
910
Software
7
BINDING SITE FOR RESIDUE GOL A 911
A
GOL
911
Software
7
BINDING SITE FOR RESIDUE ACT A 912
A
ACT
912
Software
2
BINDING SITE FOR RESIDUE GOL A 913
A
GOL
913
Software
4
BINDING SITE FOR RESIDUE EDO A 914
A
EDO
914
Software
4
BINDING SITE FOR RESIDUE GOL B 201
B
GOL
201
Software
8
BINDING SITE FOR RESIDUE GOL C 301
C
GOL
301
Software
4
BINDING SITE FOR RESIDUE MG C 302
C
MG
302
Software
4
A
ARG
573
A
ARG
281
27
1_555
A
ARG
587
A
ARG
295
27
1_555
A
ASP
610
A
ASP
318
27
1_555
A
TYR
611
A
TYR
319
27
1_555
A
SER
612
A
SER
320
27
1_555
A
GLN
613
A
GLN
321
27
1_555
A
ILE
614
A
ILE
322
27
1_555
A
GLU
615
A
GLU
323
27
1_555
A
HIS
639
A
HIS
347
27
1_555
A
ARG
659
A
ARG
367
27
1_555
A
ARG
660
A
ARG
368
27
1_555
A
LYS
663
A
LYS
371
27
1_555
A
THR
664
A
THR
372
27
1_555
A
PHE
667
A
PHE
375
27
1_555
A
ASP
785
A
ASP
493
27
1_555
A
MG
902
E
MG
27
1_555
A
MG
903
F
MG
27
1_555
A
HOH
1002
U
HOH
27
1_555
A
HOH
1006
U
HOH
27
1_555
A
HOH
1056
U
HOH
27
1_555
A
HOH
1066
U
HOH
27
1_555
A
HOH
1067
U
HOH
27
1_555
A
HOH
1084
U
HOH
27
1_555
A
HOH
1115
U
HOH
27
1_555
B
DOC
112
B
DOC
12
27
1_555
C
DA
204
C
DA
4
27
1_555
C
DG
205
C
DG
5
27
1_555
A
ASP
610
A
ASP
318
5
1_555
A
TYR
611
A
TYR
319
5
1_555
A
ASP
785
A
ASP
493
5
1_555
A
0R5
901
D
0R5
5
1_555
A
MG
903
F
MG
5
1_555
A
ASP
610
A
ASP
318
7
1_555
A
ASP
785
A
ASP
493
7
1_555
A
0R5
901
D
0R5
7
1_555
A
MG
902
E
MG
7
1_555
A
HOH
1001
U
HOH
7
1_555
A
HOH
1002
U
HOH
7
1_555
B
DOC
112
B
DOC
12
7
1_555
A
ARG
660
A
ARG
368
6
1_555
A
LYS
663
A
LYS
371
6
1_555
A
LYS
831
A
LYS
539
6
1_555
A
HOH
1067
U
HOH
6
1_555
A
HOH
1115
U
HOH
6
1_555
B
DOC
112
B
DOC
12
6
1_555
A
ASP
452
A
ASP
160
5
1_555
A
TYR
455
A
TYR
163
5
1_555
A
ARG
596
A
ARG
304
5
1_555
A
ARG
596
A
ARG
304
5
5_554
A
ASP
826
A
ASP
534
5
1_555
A
GLY
672
A
GLY
380
4
1_555
A
GLU
745
A
GLU
453
4
1_555
A
ARG
746
A
ARG
454
4
1_555
C
DA
203
C
DA
3
4
1_555
A
THR
544
A
THR
252
9
1_555
A
TYR
545
A
TYR
253
9
1_555
A
PRO
579
A
PRO
287
9
1_555
A
ASN
580
A
ASN
288
9
1_555
A
ASN
583
A
ASN
291
9
1_555
A
GOL
910
M
GOL
9
1_555
A
HOH
1136
U
HOH
9
1_555
C
DC
209
C
DC
9
9
1_555
C
DC
210
C
DC
10
9
1_555
A
ARG
313
A
ARG
21
3
1_555
A
TRP
318
A
TRP
26
3
1_555
A
ASP
551
A
ASP
259
3
1_555
A
LYS
354
A
LYS
62
7
1_555
A
ASP
355
A
ASP
63
7
1_555
A
ARG
563
A
ARG
271
7
1_555
A
GLN
566
A
GLN
274
7
1_555
A
HOH
1009
U
HOH
7
1_555
A
HOH
1073
U
HOH
7
1_555
A
HOH
1128
U
HOH
7
1_555
A
LEU
552
A
LEU
260
7
1_555
A
ASP
578
A
ASP
286
7
1_555
A
PRO
579
A
PRO
287
7
1_555
A
GOL
907
J
GOL
7
1_555
A
HOH
1018
U
HOH
7
1_555
C
DC
209
C
DC
9
7
1_555
C
DC
210
C
DC
10
7
1_555
A
LYS
508
A
LYS
216
7
6_555
A
THR
509
A
THR
217
7
6_555
A
ARG
715
A
ARG
423
7
1_555
A
LEU
733
A
LEU
441
7
1_555
A
GLU
734
A
GLU
442
7
1_555
A
ARG
736
A
ARG
444
7
1_555
A
HOH
1134
U
HOH
7
1_555
A
SER
460
A
SER
168
2
1_555
A
LYS
542
A
LYS
250
2
1_555
A
ARG
728
A
ARG
436
4
1_555
A
TYR
729
A
TYR
437
4
1_555
A
HOH
1013
U
HOH
4
1_555
A
HOH
1173
U
HOH
4
1_555
A
GLU
347
A
GLU
55
4
1_555
A
ARG
349
A
ARG
57
4
1_555
A
GLY
370
A
GLY
78
4
1_555
A
ASP
371
A
ASP
79
4
1_555
B
DG
107
B
DG
7
8
1_555
B
DG
108
B
DG
8
8
1_555
B
HOH
313
V
HOH
8
1_555
B
HOH
315
V
HOH
8
1_555
B
HOH
323
V
HOH
8
1_555
C
DG
208
C
DG
8
8
1_555
C
DC
209
C
DC
9
8
1_555
C
HOH
416
W
HOH
8
1_555
A
ARG
728
A
ARG
436
4
1_555
A
HOH
1173
U
HOH
4
1_555
C
DG
206
C
DG
6
4
1_555
C
DC
207
C
DC
7
4
1_555
C
HOH
432
W
HOH
4
1_555
C
HOH
433
W
HOH
4
1_555
C
HOH
434
W
HOH
4
1_555
C
HOH
435
W
HOH
4
1_555
152
P 31 2 1