0.010334
0.005967
0.000000
0.000000
0.011933
0.000000
0.000000
0.000000
0.012351
0.000000
0.000000
0.000000
Parker, L.J.
Handa, N.
Yokoyama, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
96.765
96.765
80.963
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O S
78.133
DIMETHYL SULFOXIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C17 H13 Cl N2 O3 S
360.815
(2Z,5Z)-2-[(2-chlorophenyl)imino]-5-(4-hydroxy-3-methoxybenzylidene)-1,3-thiazolidin-4-one
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
S
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
Y
207
N
C
N
208
N
O
N
209
N
C
N
210
N
N
N
211
N
C
N
212
N
S
N
213
N
C
N
214
N
N
Y
215
N
C
Y
216
N
C
Y
217
N
C
Y
218
N
C
N
219
N
CL
Y
220
N
C
Y
221
N
C
N
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
N
226
N
O
Y
227
N
C
Y
228
N
C
N
229
N
O
N
230
N
C
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
N
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
S
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
P
N
335
N
O
N
336
N
O
N
337
N
O
N
338
N
O
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
R
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
N
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
N
443
N
C
N
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
sing
Y
163
N
doub
Y
164
N
doub
N
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
Y
195
N
doub
Y
196
N
sing
Y
197
N
sing
Y
198
N
doub
N
199
N
sing
Y
200
N
doub
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
Y
206
N
doub
Y
207
N
sing
Y
208
N
sing
Y
209
N
doub
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
Y
214
N
doub
Y
215
N
sing
N
216
N
sing
N
217
Z
doub
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
Y
309
N
doub
Y
310
N
sing
Y
311
N
sing
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
DK
Acta Crystallogr.,Sect.F
1744-3091
68
860
866
10.1107/S1744309112027108
22869110
Flexibility of the P-loop of Pim-1 kinase: observation of a novel conformation induced by interaction with an inhibitor
2012
10.2210/pdb4eny/pdb
pdb_00004eny
100
1
IMAGE PLATE
2009-09-10
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU MICROMAX-007 HF
34187.727
Serine/threonine-protein kinase pim-1
2.7.11.1
Protein kinase domain, UNP RESIDUES 120-404
1
man
polymer
78.133
DIMETHYL SULFOXIDE
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
360.815
(2Z,5Z)-2-[(2-chlorophenyl)imino]-5-(4-hydroxy-3-methoxybenzylidene)-1,3-thiazolidin-4-one
1
syn
non-polymer
18.015
water
60
nat
water
no
no
MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL
DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF
GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI
RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKSGPSSGENLYFQ
MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL
DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF
GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI
RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKSGPSSGENLYFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PIM1
9606
Homo sapiens
cell-free protein synthesis
Plasmid
pCR2.1-TOPO
1
3.20
61.57
VAPOR DIFFUSION, HANGING DROP
5.5
100mM Citrate buffer, pH 5.5, 200mM NaCl, 1M NH4HPO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-08-08
1
1
2012-10-03
1
2
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of Pim1 kinase in complex with inhibitor (Z)-2-[(1H-indazol-3-yl)methylene]-6-methoxy-7-(piperazin-1-ylmethyl)benzofuran-3(2H)-one
Crystal structure of Pim1 kinase in complex with inhibitor (Z)-2-[(1H-indol-3-yl)methylene]-7-(azepan-1-ylmethyl)-6-hydroxybenzofuran-3(2H)-one
Crystal structure of Pim1 kinase in complex with small molecule inhibitor
Crystal structure of Pim1 kinase in complex with (2E,5Z)-2-(2-chlorophenylimino)-5-(4-hydroxy-3-nitrobenzylidene)thiazolidin-4-one
RCSB
Y
PDBJ
2012-04-13
REL
REL
DMS
DIMETHYL SULFOXIDE
GOL
GLYCEROL
PO4
PHOSPHATE ION
J19
(2Z,5Z)-2-[(2-chlorophenyl)imino]-5-(4-hydroxy-3-methoxybenzylidene)-1,3-thiazolidin-4-one
HOH
water
3UMX
PDB
experimental model
DMS
1
2
DMS
DMS
401
A
GOL
1
3
GOL
GOL
402
A
PO4
1
4
PO4
PO4
403
A
019
1
5
J19
J19
404
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
22
6
HOH
HOH
522
A
HOH
23
6
HOH
HOH
523
A
HOH
24
6
HOH
HOH
524
A
HOH
25
6
HOH
HOH
525
A
HOH
26
6
HOH
HOH
526
A
HOH
27
6
HOH
HOH
527
A
HOH
28
6
HOH
HOH
528
A
HOH
29
6
HOH
HOH
529
A
HOH
30
6
HOH
HOH
530
A
HOH
31
6
HOH
HOH
531
A
HOH
32
6
HOH
HOH
532
A
HOH
33
6
HOH
HOH
533
A
HOH
34
6
HOH
HOH
534
A
HOH
35
6
HOH
HOH
535
A
HOH
36
6
HOH
HOH
536
A
HOH
37
6
HOH
HOH
537
A
HOH
38
6
HOH
HOH
538
A
HOH
39
6
HOH
HOH
539
A
HOH
40
6
HOH
HOH
540
A
HOH
41
6
HOH
HOH
541
A
HOH
42
6
HOH
HOH
542
A
HOH
43
6
HOH
HOH
543
A
HOH
44
6
HOH
HOH
544
A
HOH
45
6
HOH
HOH
545
A
HOH
46
6
HOH
HOH
546
A
HOH
47
6
HOH
HOH
547
A
HOH
48
6
HOH
HOH
548
A
HOH
49
6
HOH
HOH
549
A
HOH
50
6
HOH
HOH
550
A
HOH
51
6
HOH
HOH
551
A
HOH
52
6
HOH
HOH
552
A
HOH
53
6
HOH
HOH
553
A
HOH
54
6
HOH
HOH
554
A
HOH
55
6
HOH
HOH
555
A
HOH
56
6
HOH
HOH
556
A
HOH
57
6
HOH
HOH
557
A
HOH
58
6
HOH
HOH
558
A
HOH
59
6
HOH
HOH
559
A
HOH
60
6
HOH
HOH
560
A
2.800
2.800
37.210
37.210
n
1
28
A
n
2
29
A
n
3
30
A
n
4
31
A
n
5
32
A
n
6
33
A
n
7
34
A
n
8
35
A
n
9
36
A
GLN
37
n
10
GLN
37
A
TYR
38
n
11
TYR
38
A
GLN
39
n
12
GLN
39
A
VAL
40
n
13
VAL
40
A
GLY
41
n
14
GLY
41
A
PRO
42
n
15
PRO
42
A
LEU
43
n
16
LEU
43
A
LEU
44
n
17
LEU
44
A
GLY
45
n
18
GLY
45
A
SER
46
n
19
SER
46
A
GLY
47
n
20
GLY
47
A
n
21
48
A
PHE
49
n
22
PHE
49
A
GLY
50
n
23
GLY
50
A
SER
51
n
24
SER
51
A
VAL
52
n
25
VAL
52
A
TYR
53
n
26
TYR
53
A
SER
54
n
27
SER
54
A
GLY
55
n
28
GLY
55
A
ILE
56
n
29
ILE
56
A
ARG
57
n
30
ARG
57
A
VAL
58
n
31
VAL
58
A
SER
59
n
32
SER
59
A
ASP
60
n
33
ASP
60
A
ASN
61
n
34
ASN
61
A
LEU
62
n
35
LEU
62
A
PRO
63
n
36
PRO
63
A
VAL
64
n
37
VAL
64
A
ALA
65
n
38
ALA
65
A
ILE
66
n
39
ILE
66
A
LYS
67
n
40
LYS
67
A
HIS
68
n
41
HIS
68
A
VAL
69
n
42
VAL
69
A
GLU
70
n
43
GLU
70
A
LYS
71
n
44
LYS
71
A
ASP
72
n
45
ASP
72
A
ARG
73
n
46
ARG
73
A
ILE
74
n
47
ILE
74
A
SER
75
n
48
SER
75
A
ASP
76
n
49
ASP
76
A
TRP
77
n
50
TRP
77
A
GLY
78
n
51
GLY
78
A
n
52
79
A
n
53
80
A
n
54
81
A
n
55
82
A
n
56
83
A
n
57
84
A
ARG
85
n
58
ARG
85
A
VAL
86
n
59
VAL
86
A
PRO
87
n
60
PRO
87
A
MET
88
n
61
MET
88
A
GLU
89
n
62
GLU
89
A
VAL
90
n
63
VAL
90
A
VAL
91
n
64
VAL
91
A
LEU
92
n
65
LEU
92
A
LEU
93
n
66
LEU
93
A
LYS
94
n
67
LYS
94
A
LYS
95
n
68
LYS
95
A
VAL
96
n
69
VAL
96
A
SER
97
n
70
SER
97
A
SER
98
n
71
SER
98
A
n
72
99
A
PHE
100
n
73
PHE
100
A
SER
101
n
74
SER
101
A
GLY
102
n
75
GLY
102
A
VAL
103
n
76
VAL
103
A
ILE
104
n
77
ILE
104
A
ARG
105
n
78
ARG
105
A
LEU
106
n
79
LEU
106
A
LEU
107
n
80
LEU
107
A
ASP
108
n
81
ASP
108
A
TRP
109
n
82
TRP
109
A
PHE
110
n
83
PHE
110
A
GLU
111
n
84
GLU
111
A
ARG
112
n
85
ARG
112
A
PRO
113
n
86
PRO
113
A
ASP
114
n
87
ASP
114
A
SER
115
n
88
SER
115
A
PHE
116
n
89
PHE
116
A
VAL
117
n
90
VAL
117
A
LEU
118
n
91
LEU
118
A
ILE
119
n
92
ILE
119
A
LEU
120
n
93
LEU
120
A
GLU
121
n
94
GLU
121
A
ARG
122
n
95
ARG
122
A
PRO
123
n
96
PRO
123
A
GLU
124
n
97
GLU
124
A
PRO
125
n
98
PRO
125
A
VAL
126
n
99
VAL
126
A
GLN
127
n
100
GLN
127
A
ASP
128
n
101
ASP
128
A
LEU
129
n
102
LEU
129
A
PHE
130
n
103
PHE
130
A
ASP
131
n
104
ASP
131
A
PHE
132
n
105
PHE
132
A
ILE
133
n
106
ILE
133
A
THR
134
n
107
THR
134
A
GLU
135
n
108
GLU
135
A
ARG
136
n
109
ARG
136
A
GLY
137
n
110
GLY
137
A
ALA
138
n
111
ALA
138
A
LEU
139
n
112
LEU
139
A
GLN
140
n
113
GLN
140
A
GLU
141
n
114
GLU
141
A
GLU
142
n
115
GLU
142
A
LEU
143
n
116
LEU
143
A
ALA
144
n
117
ALA
144
A
ARG
145
n
118
ARG
145
A
SER
146
n
119
SER
146
A
PHE
147
n
120
PHE
147
A
PHE
148
n
121
PHE
148
A
TRP
149
n
122
TRP
149
A
GLN
150
n
123
GLN
150
A
VAL
151
n
124
VAL
151
A
LEU
152
n
125
LEU
152
A
GLU
153
n
126
GLU
153
A
ALA
154
n
127
ALA
154
A
VAL
155
n
128
VAL
155
A
ARG
156
n
129
ARG
156
A
HIS
157
n
130
HIS
157
A
CYS
158
n
131
CYS
158
A
HIS
159
n
132
HIS
159
A
ASN
160
n
133
ASN
160
A
CYS
161
n
134
CYS
161
A
GLY
162
n
135
GLY
162
A
VAL
163
n
136
VAL
163
A
LEU
164
n
137
LEU
164
A
HIS
165
n
138
HIS
165
A
ARG
166
n
139
ARG
166
A
ASP
167
n
140
ASP
167
A
ILE
168
n
141
ILE
168
A
LYS
169
n
142
LYS
169
A
ASP
170
n
143
ASP
170
A
GLU
171
n
144
GLU
171
A
ASN
172
n
145
ASN
172
A
ILE
173
n
146
ILE
173
A
LEU
174
n
147
LEU
174
A
ILE
175
n
148
ILE
175
A
ASP
176
n
149
ASP
176
A
LEU
177
n
150
LEU
177
A
ASN
178
n
151
ASN
178
A
ARG
179
n
152
ARG
179
A
GLY
180
n
153
GLY
180
A
GLU
181
n
154
GLU
181
A
LEU
182
n
155
LEU
182
A
LYS
183
n
156
LYS
183
A
LEU
184
n
157
LEU
184
A
ILE
185
n
158
ILE
185
A
ASP
186
n
159
ASP
186
A
PHE
187
n
160
PHE
187
A
GLY
188
n
161
GLY
188
A
SER
189
n
162
SER
189
A
GLY
190
n
163
GLY
190
A
ALA
191
n
164
ALA
191
A
LEU
192
n
165
LEU
192
A
LEU
193
n
166
LEU
193
A
LYS
194
n
167
LYS
194
A
ASP
195
n
168
ASP
195
A
THR
196
n
169
THR
196
A
VAL
197
n
170
VAL
197
A
TYR
198
n
171
TYR
198
A
THR
199
n
172
THR
199
A
ASP
200
n
173
ASP
200
A
PHE
201
n
174
PHE
201
A
ASP
202
n
175
ASP
202
A
GLY
203
n
176
GLY
203
A
THR
204
n
177
THR
204
A
ARG
205
n
178
ARG
205
A
VAL
206
n
179
VAL
206
A
TYR
207
n
180
TYR
207
A
SER
208
n
181
SER
208
A
PRO
209
n
182
PRO
209
A
PRO
210
n
183
PRO
210
A
GLU
211
n
184
GLU
211
A
TRP
212
n
185
TRP
212
A
ILE
213
n
186
ILE
213
A
ARG
214
n
187
ARG
214
A
TYR
215
n
188
TYR
215
A
HIS
216
n
189
HIS
216
A
ARG
217
n
190
ARG
217
A
TYR
218
n
191
TYR
218
A
HIS
219
n
192
HIS
219
A
GLY
220
n
193
GLY
220
A
ARG
221
n
194
ARG
221
A
SER
222
n
195
SER
222
A
ALA
223
n
196
ALA
223
A
ALA
224
n
197
ALA
224
A
VAL
225
n
198
VAL
225
A
TRP
226
n
199
TRP
226
A
SER
227
n
200
SER
227
A
LEU
228
n
201
LEU
228
A
GLY
229
n
202
GLY
229
A
ILE
230
n
203
ILE
230
A
LEU
231
n
204
LEU
231
A
LEU
232
n
205
LEU
232
A
TYR
233
n
206
TYR
233
A
ASP
234
n
207
ASP
234
A
MET
235
n
208
MET
235
A
VAL
236
n
209
VAL
236
A
CYS
237
n
210
CYS
237
A
GLY
238
n
211
GLY
238
A
ASP
239
n
212
ASP
239
A
ILE
240
n
213
ILE
240
A
PRO
241
n
214
PRO
241
A
PHE
242
n
215
PHE
242
A
GLU
243
n
216
GLU
243
A
HIS
244
n
217
HIS
244
A
ASP
245
n
218
ASP
245
A
GLU
246
n
219
GLU
246
A
GLU
247
n
220
GLU
247
A
ILE
248
n
221
ILE
248
A
ILE
249
n
222
ILE
249
A
ARG
250
n
223
ARG
250
A
GLY
251
n
224
GLY
251
A
GLN
252
n
225
GLN
252
A
VAL
253
n
226
VAL
253
A
PHE
254
n
227
PHE
254
A
PHE
255
n
228
PHE
255
A
ARG
256
n
229
ARG
256
A
GLN
257
n
230
GLN
257
A
ARG
258
n
231
ARG
258
A
VAL
259
n
232
VAL
259
A
SER
260
n
233
SER
260
A
SER
261
n
234
SER
261
A
GLU
262
n
235
GLU
262
A
CYS
263
n
236
CYS
263
A
GLN
264
n
237
GLN
264
A
HIS
265
n
238
HIS
265
A
LEU
266
n
239
LEU
266
A
ILE
267
n
240
ILE
267
A
ARG
268
n
241
ARG
268
A
TRP
269
n
242
TRP
269
A
CYS
270
n
243
CYS
270
A
LEU
271
n
244
LEU
271
A
ALA
272
n
245
ALA
272
A
LEU
273
n
246
LEU
273
A
ARG
274
n
247
ARG
274
A
PRO
275
n
248
PRO
275
A
SER
276
n
249
SER
276
A
ASP
277
n
250
ASP
277
A
ARG
278
n
251
ARG
278
A
PRO
279
n
252
PRO
279
A
THR
280
n
253
THR
280
A
PHE
281
n
254
PHE
281
A
GLU
282
n
255
GLU
282
A
GLU
283
n
256
GLU
283
A
ILE
284
n
257
ILE
284
A
GLN
285
n
258
GLN
285
A
ASN
286
n
259
ASN
286
A
HIS
287
n
260
HIS
287
A
PRO
288
n
261
PRO
288
A
TRP
289
n
262
TRP
289
A
MET
290
n
263
MET
290
A
GLN
291
n
264
GLN
291
A
ASP
292
n
265
ASP
292
A
VAL
293
n
266
VAL
293
A
LEU
294
n
267
LEU
294
A
LEU
295
n
268
LEU
295
A
PRO
296
n
269
PRO
296
A
GLN
297
n
270
GLN
297
A
GLU
298
n
271
GLU
298
A
THR
299
n
272
THR
299
A
ALA
300
n
273
ALA
300
A
GLU
301
n
274
GLU
301
A
ILE
302
n
275
ILE
302
A
HIS
303
n
276
HIS
303
A
LEU
304
n
277
LEU
304
A
HIS
305
n
278
HIS
305
A
n
279
306
A
n
280
307
A
n
281
308
A
n
282
309
A
n
283
310
A
n
284
311
A
n
285
312
A
n
286
313
A
n
287
314
A
n
288
315
A
n
289
316
A
n
290
317
A
n
291
318
A
n
292
319
A
n
293
320
A
n
294
321
A
n
295
322
A
n
296
323
A
n
297
324
A
n
298
325
A
2.5528
1.0387
1.0565
3.5979
-0.3585
3.2094
-0.0014
-0.1899
-0.1378
0.1966
-0.1678
0.0059
0.3400
-0.0666
0.0991
0.1227
-0.1610
0.0434
0.2473
0.0577
0.0409
refined
-69.2835
114.1782
6.8365
X-RAY DIFFRACTION
3.2334
1.5916
-1.8273
4.2060
-1.7221
3.6578
0.0327
0.1732
0.1119
0.0816
-0.0158
0.2329
0.0882
-0.5484
-0.0457
0.1420
-0.0174
-0.0707
0.2566
-0.0113
0.1739
refined
-66.8887
122.6557
3.1116
X-RAY DIFFRACTION
2.6043
-0.6322
0.4493
1.5510
-0.4898
2.4043
0.0588
-0.1278
-0.0280
-0.1021
0.0261
-0.0588
0.3149
0.0139
-0.0663
0.0973
-0.0238
-0.0376
0.1066
0.0047
0.0977
refined
-50.7957
123.5501
-0.1596
X-RAY DIFFRACTION
3.7273
-0.4999
0.3090
3.7781
-0.5585
4.8905
0.1029
-0.2220
0.3027
0.1216
-0.0251
-0.5391
-0.3361
0.5193
-0.0753
0.0788
-0.0277
0.0329
0.1680
-0.0264
0.2093
refined
-42.5148
133.4007
-4.3928
X-RAY DIFFRACTION
1.6740
-1.1636
0.8729
7.6713
1.3705
5.1202
-0.0294
-0.1525
0.3595
-0.0990
-0.1156
0.2604
-0.3555
-0.5631
0.2291
0.1149
0.1211
0.0806
0.1078
0.0442
0.2747
refined
-61.9586
143.4078
-0.7374
X-RAY DIFFRACTION
A
37
A
95
X-RAY DIFFRACTION
1
CHAIN A AND (RESSEQ 37:95)
A
96
A
140
X-RAY DIFFRACTION
2
CHAIN A AND (RESSEQ 96:140)
A
141
A
250
X-RAY DIFFRACTION
3
CHAIN A AND (RESSEQ 141:250)
A
251
A
290
X-RAY DIFFRACTION
4
CHAIN A AND (RESSEQ 251:290)
A
291
A
305
X-RAY DIFFRACTION
5
CHAIN A AND (RESSEQ 291:305)
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
41
A
N
GLY
14
A
O
SER
54
A
O
SER
27
A
N
SER
51
A
N
SER
24
A
O
HIS
68
A
O
HIS
41
A
N
ALA
65
A
N
ALA
38
A
O
LEU
120
A
O
LEU
93
A
O
ILE
119
A
O
ILE
92
A
N
ASP
108
A
N
ASP
81
A
N
GLN
127
A
N
GLN
100
A
O
ILE
175
A
O
ILE
148
A
N
ASP
176
A
N
ASP
149
A
O
GLU
181
A
O
GLU
154
A
N
LEU
164
A
N
LEU
137
A
O
ALA
191
A
O
ALA
164
1
A
CG
ASP
72
A
CG
ASP
45
1
Y
1
A
OD1
ASP
72
A
OD1
ASP
45
1
Y
1
A
OD2
ASP
72
A
OD2
ASP
45
1
Y
1
A
MET
28
A
MET
1
1
Y
1
A
LYS
29
A
LYS
2
1
Y
1
A
GLU
30
A
GLU
3
1
Y
1
A
LYS
31
A
LYS
4
1
Y
1
A
GLU
32
A
GLU
5
1
Y
1
A
PRO
33
A
PRO
6
1
Y
1
A
LEU
34
A
LEU
7
1
Y
1
A
GLU
35
A
GLU
8
1
Y
1
A
SER
36
A
SER
9
1
Y
1
A
GLY
48
A
GLY
21
1
Y
1
A
GLU
79
A
GLU
52
1
Y
1
A
LEU
80
A
LEU
53
1
Y
1
A
PRO
81
A
PRO
54
1
Y
1
A
ASN
82
A
ASN
55
1
Y
1
A
GLY
83
A
GLY
56
1
Y
1
A
THR
84
A
THR
57
1
Y
1
A
GLY
99
A
GLY
72
1
Y
1
A
SER
306
A
SER
279
1
Y
1
A
LEU
307
A
LEU
280
1
Y
1
A
SER
308
A
SER
281
1
Y
1
A
PRO
309
A
PRO
282
1
Y
1
A
GLY
310
A
GLY
283
1
Y
1
A
PRO
311
A
PRO
284
1
Y
1
A
SER
312
A
SER
285
1
Y
1
A
LYS
313
A
LYS
286
1
Y
1
A
SER
314
A
SER
287
1
Y
1
A
GLY
315
A
GLY
288
1
Y
1
A
PRO
316
A
PRO
289
1
Y
1
A
SER
317
A
SER
290
1
Y
1
A
SER
318
A
SER
291
1
Y
1
A
GLY
319
A
GLY
292
1
Y
1
A
GLU
320
A
GLU
293
1
Y
1
A
ASN
321
A
ASN
294
1
Y
1
A
LEU
322
A
LEU
295
1
Y
1
A
TYR
323
A
TYR
296
1
Y
1
A
PHE
324
A
PHE
297
1
Y
1
A
GLN
325
A
GLN
298
1
Y
1
A
ASP
60
-140.56
14.34
1
A
ASP
167
-151.38
39.53
1
A
ASP
176
-69.24
96.65
1
A
ASP
186
56.15
81.83
1
A
ASP
202
-140.12
33.60
153.380
44.7889
0.240
2.3250
0.0000
0.0000
2.3250
0.0000
-4.6499
0.2236
0.1726
0.1751
2.8010
31.6740
541
10693
10689
5.0600
99.9800
1.000
0.480
0.8526
0.4700
RANDOM
1
1.370
MOLECULAR REPLACEMENT
21.6000
0.8600
1.1000
3UMX
ML
FLAT BULK SOLVENT MODEL
34.9240
0.3640
2.8010
31.6740
60
2239
39
0
2140
0.005
2242
0.777
3037
0.059
321
0.004
389
13.792
823
0.3782
0.2675
3.0832
143
2512
2655
2512
4
100.0000
0.2390
0.1687
3.5289
137
2517
2654
2517
4
100.0000
0.1988
0.1487
4.4440
131
2532
2663
2532
4
100.0000
0.1805
0.1625
31.6758
130
2587
2717
2587
4
100.0000
64.30
2.801
37.216
4ENY
10721
10721
0.079
0.079
1
29.600
12.500
100.000
0.420
0.403
2.800
2.950
1.900
19422
1555
0.118
0.420
0.403
1
6.800
12.500
100.000
0.301
0.289
2.950
3.130
2.400
18466
1473
0.085
0.301
0.289
1
9.700
12.500
100.000
0.186
0.178
3.130
3.350
4.300
17416
1385
0.052
0.186
0.178
1
15.600
12.600
100.000
0.110
0.106
3.350
3.610
7.200
16251
1289
0.031
0.110
0.106
1
24.700
12.600
100.000
0.072
0.069
3.610
3.960
10.900
14931
1183
0.020
0.072
0.069
1
34.100
12.600
100.000
0.048
0.046
3.960
4.430
16.300
13635
1080
0.013
0.048
0.046
1
43.300
12.600
100.000
0.041
0.039
4.430
5.110
17.800
12111
957
0.012
0.041
0.039
1
49.500
12.700
100.000
0.046
0.044
5.110
6.260
17.100
10262
811
0.013
0.046
0.044
1
47.700
12.700
100.000
0.034
0.033
6.260
8.850
22.200
7910
633
0.010
0.034
0.033
1
60.500
12.500
100.000
0.023
0.022
8.850
37.216
27.100
4121
355
0.007
0.023
0.022
1
76.800
11.600
98.800
data reduction
Andrew G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
21/9/2006
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.2.25
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Fri Sep 23 01:57:52 2011 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.3.0
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.3_928
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
CrystalClear
Crystal Structure of Pim-1 kinase in complex with (2E,5Z)-2-(2-chlorophenylimino)-5-(4-hydroxy-3-methoxybenzylidene)thiazolidin-4-one
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ASP
72
A
ASP
45
HELX_P
A
ILE
74
A
ILE
47
5
1
3
A
PRO
87
A
PRO
60
HELX_P
A
VAL
96
A
VAL
69
1
2
10
A
LEU
129
A
LEU
102
HELX_P
A
GLY
137
A
GLY
110
1
3
9
A
GLN
140
A
GLN
113
HELX_P
A
CYS
161
A
CYS
134
1
4
22
A
LYS
169
A
LYS
142
HELX_P
A
GLU
171
A
GLU
144
5
5
3
A
THR
204
A
THR
177
HELX_P
A
SER
208
A
SER
181
5
6
5
A
PRO
209
A
PRO
182
HELX_P
A
HIS
216
A
HIS
189
1
7
8
A
HIS
219
A
HIS
192
HELX_P
A
GLY
238
A
GLY
211
1
8
20
A
HIS
244
A
HIS
217
HELX_P
A
GLY
251
A
GLY
224
1
9
8
A
SER
260
A
SER
233
HELX_P
A
LEU
271
A
LEU
244
1
10
12
A
ARG
274
A
ARG
247
HELX_P
A
ARG
278
A
ARG
251
5
11
5
A
THR
280
A
THR
253
HELX_P
A
ASN
286
A
ASN
259
1
12
7
A
HIS
287
A
HIS
260
HELX_P
A
GLN
291
A
GLN
264
5
13
5
A
LEU
295
A
LEU
268
HELX_P
A
LEU
304
A
LEU
277
1
14
10
TRANSFERASE/INHIBITOR
Pim-1 kinase, TRANSFERASE-INHIBITOR complex
A
GLU
124
A
GLU
97
1
A
PRO
125
A
PRO
98
0.30
PIM1_HUMAN
UNP
1
120
P11309
KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD
WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG
SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR
WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
120
404
4ENY
29
313
P11309
A
1
2
286
1
expression tag
MET
28
4ENY
A
P11309
UNP
1
1
expression tag
SER
314
4ENY
A
P11309
UNP
287
1
expression tag
GLY
315
4ENY
A
P11309
UNP
288
1
expression tag
PRO
316
4ENY
A
P11309
UNP
289
1
expression tag
SER
317
4ENY
A
P11309
UNP
290
1
expression tag
SER
318
4ENY
A
P11309
UNP
291
1
expression tag
GLY
319
4ENY
A
P11309
UNP
292
1
expression tag
GLU
320
4ENY
A
P11309
UNP
293
1
expression tag
ASN
321
4ENY
A
P11309
UNP
294
1
expression tag
LEU
322
4ENY
A
P11309
UNP
295
1
expression tag
TYR
323
4ENY
A
P11309
UNP
296
1
expression tag
PHE
324
4ENY
A
P11309
UNP
297
1
expression tag
GLN
325
4ENY
A
P11309
UNP
298
5
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
11
A
SER
46
A
SER
19
A
SER
51
A
SER
24
A
ARG
57
A
ARG
30
A
PRO
63
A
PRO
36
A
GLU
70
A
GLU
43
A
SER
115
A
SER
88
A
GLU
121
A
GLU
94
A
LEU
106
A
LEU
79
A
GLU
111
A
GLU
84
A
VAL
126
A
VAL
99
A
ASP
128
A
ASP
101
A
ILE
173
A
ILE
146
A
ASP
176
A
ASP
149
A
GLU
181
A
GLU
154
A
LEU
184
A
LEU
157
A
VAL
163
A
VAL
136
A
LEU
164
A
LEU
137
A
ALA
191
A
ALA
164
A
LEU
192
A
LEU
165
BINDING SITE FOR RESIDUE DMS A 401
A
DMS
401
Software
6
BINDING SITE FOR RESIDUE GOL A 402
A
GOL
402
Software
4
BINDING SITE FOR RESIDUE PO4 A 403
A
PO4
403
Software
4
BINDING SITE FOR RESIDUE J19 A 404
A
J19
404
Software
13
A
PHE
130
A
PHE
103
6
1_555
A
ILE
133
A
ILE
106
6
1_555
A
ASP
170
A
ASP
143
6
1_555
A
ASP
234
A
ASP
207
6
1_555
A
GLY
238
A
GLY
211
6
1_555
A
ASP
239
A
ASP
212
6
1_555
A
GLN
127
A
GLN
100
4
1_555
A
ASP
128
A
ASP
101
4
1_555
A
ASP
131
A
ASP
104
4
1_555
A
J19
404
E
J19
4
1_555
A
ARG
258
A
ARG
231
4
1_555
A
SER
260
A
SER
233
4
1_555
A
SER
261
A
SER
234
4
1_555
A
HOH
556
F
HOH
4
1_555
A
GLY
45
A
GLY
18
13
1_555
A
SER
46
A
SER
19
13
1_555
A
PHE
49
A
PHE
22
13
1_555
A
GLY
50
A
GLY
23
13
1_555
A
VAL
52
A
VAL
25
13
1_555
A
ALA
65
A
ALA
38
13
1_555
A
LYS
67
A
LYS
40
13
1_555
A
LEU
120
A
LEU
93
13
1_555
A
GLU
121
A
GLU
94
13
1_555
A
VAL
126
A
VAL
99
13
1_555
A
LEU
174
A
LEU
147
13
1_555
A
ASP
186
A
ASP
159
13
1_555
A
GOL
402
C
GOL
13
1_555
170
P 65