0.028423
0.000000
0.000000
0.000000
0.016661
0.000000
0.000000
0.000000
0.007367
0.00000
0.00000
0.00000
Chen, L.
Shi, K.
Yin, Z.Q.
Aihara, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
35.183
60.019
135.734
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
41
648
656
10.1093/nar/gks1015
23118486
Structural asymmetry in the Thermus thermophilus RuvC dimer suggests a basis for sequential strand cleavages during Holliday junction resolution.
2013
10.2210/pdb4ep5/pdb
pdb_00004ep5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
96
1
CCD
2011-12-02
ADSC QUANTUM 315
SI 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
24-ID-E
APS
0.979
SYNCHROTRON
APS BEAMLINE 24-ID-E
17780.820
Crossover junction endodeoxyribonuclease RuvC
3.1.22.4
D146N
1
man
polymer
96.063
SULFATE ION
4
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
20
nat
water
Holliday junction nuclease RuvC, Holliday junction resolvase RuvC
no
no
MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL
AYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAKEEVALMVRGILGLKEAPRPSHLANALAIALTHAFYARM
GTAKPL
MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL
AYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAKEEVALMVRGILGLKEAPRPSHLANALAIALTHAFYARM
GTAKPL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
ruvC, TTHA1090
300852
Thermus thermophilus
562
Escherichia coli
1
2.01
38.95
4.2
PEG400, Li2SO4, and sodium acetate, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_special_symmetry
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2012-11-14
1
1
2013-01-16
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-04-17
REL
REL
SO4
SULFATE ION
GOL
GLYCEROL
HOH
water
SO4
201
2
SO4
SO4
201
A
SO4
202
2
SO4
SO4
202
A
SO4
203
2
SO4
SO4
203
A
SO4
204
2
SO4
SO4
204
A
GOL
205
3
GOL
GOL
205
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
315
4
HOH
HOH
314
A
HOH
316
4
HOH
HOH
315
A
HOH
317
4
HOH
HOH
316
A
HOH
318
4
HOH
HOH
317
A
HOH
319
4
HOH
HOH
318
A
HOH
320
4
HOH
HOH
319
A
HOH
321
4
HOH
HOH
320
A
MET
1
n
1
MET
1
A
VAL
2
n
2
VAL
2
A
VAL
3
n
3
VAL
3
A
ALA
4
n
4
ALA
4
A
GLY
5
n
5
GLY
5
A
ILE
6
n
6
ILE
6
A
ASP
7
n
7
ASP
7
A
PRO
8
n
8
PRO
8
A
GLY
9
n
9
GLY
9
A
ILE
10
n
10
ILE
10
A
THR
11
n
11
THR
11
A
HIS
12
n
12
HIS
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
VAL
17
n
17
VAL
17
A
VAL
18
n
18
VAL
18
A
ALA
19
n
19
ALA
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
GLY
22
n
22
GLY
22
A
LYS
23
n
23
LYS
23
A
GLY
24
n
24
GLY
24
A
ALA
25
n
25
ALA
25
A
LEU
26
n
26
LEU
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
ARG
29
n
29
ARG
29
A
LEU
30
n
30
LEU
30
A
LEU
31
n
31
LEU
31
A
HIS
32
n
32
HIS
32
A
GLY
33
n
33
GLY
33
A
GLU
34
n
34
GLU
34
A
VAL
35
n
35
VAL
35
A
VAL
36
n
36
VAL
36
A
LYS
37
n
37
LYS
37
A
THR
38
n
38
THR
38
A
SER
39
n
39
SER
39
A
PRO
40
n
40
PRO
40
A
GLN
41
n
41
GLN
41
A
GLU
42
n
42
GLU
42
A
PRO
43
n
43
PRO
43
A
ALA
44
n
44
ALA
44
A
LYS
45
n
45
LYS
45
A
GLU
46
n
46
GLU
46
A
ARG
47
n
47
ARG
47
A
VAL
48
n
48
VAL
48
A
GLY
49
n
49
GLY
49
A
ARG
50
n
50
ARG
50
A
ILE
51
n
51
ILE
51
A
HIS
52
n
52
HIS
52
A
ALA
53
n
53
ALA
53
A
ARG
54
n
54
ARG
54
A
VAL
55
n
55
VAL
55
A
LEU
56
n
56
LEU
56
A
GLU
57
n
57
GLU
57
A
VAL
58
n
58
VAL
58
A
LEU
59
n
59
LEU
59
A
HIS
60
n
60
HIS
60
A
ARG
61
n
61
ARG
61
A
PHE
62
n
62
PHE
62
A
ARG
63
n
63
ARG
63
A
PRO
64
n
64
PRO
64
A
GLU
65
n
65
GLU
65
A
ALA
66
n
66
ALA
66
A
VAL
67
n
67
VAL
67
A
ALA
68
n
68
ALA
68
A
VAL
69
n
69
VAL
69
A
GLU
70
n
70
GLU
70
A
GLU
71
n
71
GLU
71
A
n
72
72
A
n
73
73
A
n
74
74
A
n
75
75
A
n
76
76
A
n
77
77
A
n
78
78
A
n
79
79
A
n
80
80
A
ALA
81
n
81
ALA
81
A
TYR
82
n
82
TYR
82
A
LYS
83
n
83
LYS
83
A
VAL
84
n
84
VAL
84
A
GLY
85
n
85
GLY
85
A
TRP
86
n
86
TRP
86
A
ALA
87
n
87
ALA
87
A
LEU
88
n
88
LEU
88
A
GLY
89
n
89
GLY
89
A
ALA
90
n
90
ALA
90
A
VAL
91
n
91
VAL
91
A
LEU
92
n
92
LEU
92
A
VAL
93
n
93
VAL
93
A
ALA
94
n
94
ALA
94
A
ALA
95
n
95
ALA
95
A
PHE
96
n
96
PHE
96
A
GLU
97
n
97
GLU
97
A
ALA
98
n
98
ALA
98
A
GLY
99
n
99
GLY
99
A
VAL
100
n
100
VAL
100
A
PRO
101
n
101
PRO
101
A
VAL
102
n
102
VAL
102
A
TYR
103
n
103
TYR
103
A
ALA
104
n
104
ALA
104
A
TYR
105
n
105
TYR
105
A
GLY
106
n
106
GLY
106
A
PRO
107
n
107
PRO
107
A
MET
108
n
108
MET
108
A
GLN
109
n
109
GLN
109
A
VAL
110
n
110
VAL
110
A
LYS
111
n
111
LYS
111
A
GLN
112
n
112
GLN
112
A
ALA
113
n
113
ALA
113
A
LEU
114
n
114
LEU
114
A
ALA
115
n
115
ALA
115
A
GLY
116
n
116
GLY
116
A
HIS
117
n
117
HIS
117
A
GLY
118
n
118
GLY
118
A
HIS
119
n
119
HIS
119
A
ALA
120
n
120
ALA
120
A
ALA
121
n
121
ALA
121
A
LYS
122
n
122
LYS
122
A
GLU
123
n
123
GLU
123
A
GLU
124
n
124
GLU
124
A
VAL
125
n
125
VAL
125
A
ALA
126
n
126
ALA
126
A
LEU
127
n
127
LEU
127
A
MET
128
n
128
MET
128
A
VAL
129
n
129
VAL
129
A
ARG
130
n
130
ARG
130
A
GLY
131
n
131
GLY
131
A
ILE
132
n
132
ILE
132
A
LEU
133
n
133
LEU
133
A
GLY
134
n
134
GLY
134
A
LEU
135
n
135
LEU
135
A
LYS
136
n
136
LYS
136
A
GLU
137
n
137
GLU
137
A
ALA
138
n
138
ALA
138
A
PRO
139
n
139
PRO
139
A
ARG
140
n
140
ARG
140
A
PRO
141
n
141
PRO
141
A
SER
142
n
142
SER
142
A
HIS
143
n
143
HIS
143
A
LEU
144
n
144
LEU
144
A
ALA
145
n
145
ALA
145
A
ASN
146
n
146
ASN
146
A
ALA
147
n
147
ALA
147
A
LEU
148
n
148
LEU
148
A
ALA
149
n
149
ALA
149
A
ILE
150
n
150
ILE
150
A
ALA
151
n
151
ALA
151
A
LEU
152
n
152
LEU
152
A
THR
153
n
153
THR
153
A
HIS
154
n
154
HIS
154
A
ALA
155
n
155
ALA
155
A
PHE
156
n
156
PHE
156
A
TYR
157
n
157
TYR
157
A
ALA
158
n
158
ALA
158
A
ARG
159
n
159
ARG
159
A
MET
160
n
160
MET
160
A
GLY
161
n
161
GLY
161
A
THR
162
n
162
THR
162
A
ALA
163
n
163
ALA
163
A
LYS
164
n
164
LYS
164
A
PRO
165
n
165
PRO
165
A
LEU
166
n
166
LEU
166
A
2.6679
-0.9745
-1.7022
5.7098
-1.0831
1.6353
0.3361
-0.1052
0.0070
0.2631
0.2264
-0.4326
0.0224
0.1848
-0.5461
0.1689
-0.0121
0.0410
0.7557
-0.0601
0.4399
refined
5.3817
2.8510
19.4710
X-RAY DIFFRACTION
5.8978
-3.5081
-2.6530
7.0492
-3.4134
6.2108
0.1038
0.9119
-0.3848
-0.0371
0.0737
-0.1570
-1.1387
0.2800
-0.1094
0.2209
-0.0180
0.0414
0.3793
-0.0211
0.2033
refined
2.9812
6.1327
18.0434
X-RAY DIFFRACTION
3.4933
0.4731
-3.1845
6.0089
-2.6578
3.7291
-0.3925
1.4231
0.1238
-1.0546
-0.4426
1.5555
0.8459
-1.1191
0.8525
0.4865
-0.0952
-0.1222
1.0817
-0.0964
0.6760
refined
1.5416
-4.2695
0.7334
X-RAY DIFFRACTION
2.7748
-2.3067
-2.1678
4.0445
3.1791
8.6522
0.4492
0.8704
-0.1808
-0.6048
-0.6933
0.3174
-0.7176
-0.9674
0.2071
0.3887
0.0086
-0.0472
0.6996
0.0263
0.3273
refined
-0.0363
7.7090
13.8409
X-RAY DIFFRACTION
8.7423
5.2755
6.8336
3.3710
4.7420
7.4334
-1.4377
0.7786
-0.2265
-0.7231
1.2487
-0.4114
-1.1343
0.9005
0.0172
0.5418
-0.0849
-0.0528
0.6813
0.0399
0.3886
refined
5.5327
14.6542
36.0388
X-RAY DIFFRACTION
9.6193
3.7673
-2.1205
2.1844
0.5333
6.4627
0.0489
-0.2606
0.9627
0.3166
-0.2679
0.3093
-0.2565
0.3193
0.1702
0.2391
0.0093
-0.0402
0.5859
0.0477
0.4071
refined
-0.5010
7.1819
30.5053
X-RAY DIFFRACTION
8.4119
0.6459
-0.9987
4.0370
2.9706
8.9815
-0.4597
-1.1777
1.1053
0.4349
-0.0275
1.2600
0.5197
-1.4653
0.3582
0.3013
-0.0498
-0.0532
0.9922
-0.0201
0.4937
refined
-8.0597
2.0329
20.1202
X-RAY DIFFRACTION
4.4215
-0.0305
-1.6612
2.1300
-0.3639
1.8028
-0.2495
0.1043
-0.6791
0.0864
0.0889
0.5383
0.1651
-0.1557
0.0367
-0.3019
0.0449
0.1269
0.7654
0.0310
0.3864
refined
0.6686
-4.2022
17.8114
X-RAY DIFFRACTION
5.2772
-4.9156
1.7382
6.0867
0.6614
4.0265
-0.0578
-1.0970
-0.7916
1.0162
0.4202
-1.5795
0.0183
0.8614
-0.2311
0.3379
-0.0681
-0.1629
1.3396
0.4535
0.8951
refined
13.7385
-0.5659
21.6328
X-RAY DIFFRACTION
5.0229
-2.5835
-4.8685
1.7424
2.3543
4.7731
0.0971
-0.6952
0.4587
0.3922
0.2313
-0.1464
-0.2618
0.9041
-0.2454
0.4230
-0.1317
0.0087
1.3857
0.1904
0.4895
refined
12.1716
3.4482
34.5440
X-RAY DIFFRACTION
1.2140
-0.3430
-0.6072
1.4391
1.4516
3.8875
-0.3854
-0.1713
-0.5056
0.0504
-0.0393
0.4088
0.4422
-0.0183
0.3430
0.2186
-0.0254
0.0551
0.5406
0.0554
0.4171
refined
2.9573
-4.4380
24.6439
X-RAY DIFFRACTION
3.1147
-2.1288
4.9559
7.2654
-1.8397
8.3258
-0.1587
-0.1842
-1.0211
-0.0235
0.4937
-0.3825
0.6444
0.7978
-0.2210
0.2312
0.0652
0.0321
0.8215
-0.0004
0.4724
refined
16.9152
-2.7790
9.8791
X-RAY DIFFRACTION
9.3026
-5.1021
-0.0746
4.0431
-1.2435
1.3344
0.0561
-0.2119
0.9984
-0.1768
0.2768
-0.0759
-0.6203
-0.1613
0.1940
0.2073
-0.0613
0.0063
0.9893
-0.1534
0.6347
refined
20.4965
3.1331
8.8970
X-RAY DIFFRACTION
2.8168
4.2702
1.5877
6.5653
1.7930
8.2483
-0.2166
1.6494
0.4398
-1.1207
0.3121
-0.3195
-0.5592
0.5533
-0.0538
0.4411
0.1044
0.1198
0.7248
0.1128
0.3847
refined
9.0723
6.8920
4.1833
X-RAY DIFFRACTION
9.6313
1.1000
0.5876
4.8057
-5.2539
9.1364
0.3926
-0.8077
0.7249
0.1905
-0.0647
0.8543
-2.5367
0.5932
0.0204
0.8040
0.0411
0.0038
0.3527
-0.0770
0.5351
refined
8.1537
13.5836
11.0230
X-RAY DIFFRACTION
7.5119
2.4446
-1.1191
4.6654
-0.3291
3.4718
0.0537
-0.1459
-0.8878
-0.2397
0.1202
-1.0708
0.0026
0.5333
-0.1435
0.1737
0.0272
-0.0110
0.6841
-0.0432
0.2988
refined
8.0814
-0.6923
12.1809
X-RAY DIFFRACTION
6.0686
-1.1252
-0.3598
6.0967
5.3296
9.0843
-0.7676
0.2932
-1.4950
0.4241
0.2791
0.2460
2.3687
1.8743
0.5618
0.6717
0.2501
0.1889
0.7575
-0.0472
1.0493
refined
7.9180
-11.6039
12.7308
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 1:11)
X-RAY DIFFRACTION
2
(chain A and resid 12:19)
X-RAY DIFFRACTION
3
(chain A and resid 20:26)
X-RAY DIFFRACTION
4
(chain A and resid 27:37)
X-RAY DIFFRACTION
5
(chain A and resid 38:45)
X-RAY DIFFRACTION
6
(chain A and resid 46:56)
X-RAY DIFFRACTION
7
(chain A and resid 57:63)
X-RAY DIFFRACTION
8
(chain A and resid 64:69)
X-RAY DIFFRACTION
9
(chain A and resid 70:80)
X-RAY DIFFRACTION
10
(chain A and resid 81:86)
X-RAY DIFFRACTION
11
(chain A and resid 87:107)
X-RAY DIFFRACTION
12
(chain A and resid 108:116)
X-RAY DIFFRACTION
13
(chain A and resid 117:125)
X-RAY DIFFRACTION
14
(chain A and resid 126:134)
X-RAY DIFFRACTION
15
(chain A and resid 135:143)
X-RAY DIFFRACTION
16
(chain A and resid 144:157)
X-RAY DIFFRACTION
17
(chain A and resid 158:166)
author_and_software_defined_assembly
PISA
2
dimeric
3450
-125
14510
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_555
-x,-y+1/2,z
crystal symmetry operation
0.0000000000
30.0095000000
0.0000000000
A
O
HIS
32
A
O
HIS
32
A
N
VAL
17
A
N
VAL
17
A
O
GLY
16
A
O
GLY
16
A
N
GLY
5
A
N
GLY
5
A
N
ALA
4
A
N
ALA
4
A
O
ALA
68
A
O
ALA
68
A
N
VAL
67
A
N
VAL
67
A
O
TYR
103
A
O
TYR
103
1
A
SO4
202
C
SO4
1
A
HOH
314
G
HOH
1
A
HOH
318
G
HOH
1
A
GLN
72
A
GLN
72
1
Y
1
A
PHE
73
A
PHE
73
1
Y
1
A
PHE
74
A
PHE
74
1
Y
1
A
TYR
75
A
TYR
75
1
Y
1
A
ARG
76
A
ARG
76
1
Y
1
A
GLN
77
A
GLN
77
1
Y
1
A
ASN
78
A
ASN
78
1
Y
1
A
GLU
79
A
GLU
79
1
Y
1
A
LEU
80
A
LEU
80
1
Y
-8.37750
-0.00000
0.00000
26.89880
-0.00000
-18.52130
0.261
0.208
0.213
2.08
36.13
844
8444
8444
10.000
92.9
0.230
1
1.370
MOLECULAR REPLACEMENT
32.470
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
2.08
36.13
20
1211
26
0
1165
0.006
1210
0.974
1640
14.880
432
0.060
186
0.004
206
0.3161
0.2548
2.2047
107
954
72.00
0.3332
0.2280
2.3749
126
1150
86.00
0.2220
0.2037
2.6138
148
1322
98.00
0.1968
0.1998
2.9919
150
1353
100.00
0.2500
0.2025
3.7688
151
1368
100.00
0.2778
0.2049
36.1345
162
1453
100.00
2.070
50.000
4EP5
8463
0.000
0.06000
0.06000
1
6.5000
6.500
93.3
0.69800
2.08
2.12
1.900
0.69800
1
5.00
0.7
data collection
ADSC
Quantum
phasing
PHASER
refinement
PHENIX
(phenix.refine: dev_1005)
data reduction
HKL-2000
data scaling
HKL-2000
Thermus thermophilus RuvC structure
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
PRO
43
A
PRO
43
HELX_P
A
ARG
63
A
ARG
63
1
1
21
A
TYR
82
A
TYR
82
HELX_P
A
GLY
99
A
GLY
99
1
2
18
A
GLY
106
A
GLY
106
HELX_P
A
GLY
116
A
GLY
116
1
3
11
A
ALA
121
A
ALA
121
HELX_P
A
GLY
134
A
GLY
134
1
4
14
A
PRO
141
A
PRO
141
HELX_P
A
MET
160
A
MET
160
1
5
20
HYDROLASE
resolvase, HYDROLASE
A
ARG
140
A
ARG
140
1
A
PRO
141
A
PRO
141
-2.41
RUVC_THET8
UNP
1
1
Q5SJC4
MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL
AYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAKEEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARM
GTAKPL
1
166
4EP5
1
166
Q5SJC4
A
1
1
166
1
ASP
engineered mutation
ASN
146
4EP5
A
Q5SJC4
UNP
146
146
5
anti-parallel
anti-parallel
parallel
parallel
A
ALA
28
A
ALA
28
A
LYS
37
A
LYS
37
A
HIS
12
A
HIS
12
A
VAL
20
A
VAL
20
A
VAL
2
A
VAL
2
A
ASP
7
A
ASP
7
A
ALA
66
A
ALA
66
A
GLU
70
A
GLU
70
A
VAL
102
A
VAL
102
A
TYR
105
A
TYR
105
BINDING SITE FOR RESIDUE SO4 A 201
A
SO4
201
Software
11
BINDING SITE FOR RESIDUE SO4 A 202
A
SO4
202
Software
9
BINDING SITE FOR RESIDUE SO4 A 203
A
SO4
203
Software
3
BINDING SITE FOR RESIDUE SO4 A 204
A
SO4
204
Software
4
BINDING SITE FOR RESIDUE GOL A 205
A
GOL
205
Software
4
A
VAL
35
A
VAL
35
11
1_555
A
VAL
35
A
VAL
35
11
6_555
A
VAL
36
A
VAL
36
11
6_555
A
LYS
37
A
LYS
37
11
6_555
A
LYS
37
A
LYS
37
11
1_555
A
ARG
50
A
ARG
50
11
1_555
A
ARG
50
A
ARG
50
11
6_555
A
SO4
202
C
SO4
11
6_555
A
SO4
202
C
SO4
11
1_555
A
HOH
308
G
HOH
11
6_555
A
HOH
312
G
HOH
11
1_555
A
GLU
34
A
GLU
34
9
6_555
A
GLU
34
A
GLU
34
9
1_555
A
VAL
35
A
VAL
35
9
1_555
A
VAL
35
A
VAL
35
9
6_555
A
LYS
37
A
LYS
37
9
6_555
A
LYS
37
A
LYS
37
9
1_555
A
SO4
201
B
SO4
9
6_555
A
SO4
201
B
SO4
9
1_555
A
HOH
312
G
HOH
9
6_555
A
ARG
61
A
ARG
61
3
1_655
A
LYS
111
A
LYS
111
3
1_555
A
LYS
122
A
LYS
122
3
1_555
A
GLY
106
A
GLY
106
4
1_555
A
PRO
107
A
PRO
107
4
1_555
A
MET
108
A
MET
108
4
1_555
A
GLN
109
A
GLN
109
4
1_555
A
LYS
37
A
LYS
37
4
1_555
A
ARG
54
A
ARG
54
4
6_555
A
ARG
61
A
ARG
61
4
6_555
A
PRO
141
A
PRO
141
4
1_555
24
I 21 21 21