0.009334
0.005389
0.000000
0.000000
0.010778
0.000000
0.000000
0.000000
0.016685
0.00000
0.00000
0.00000
Kim, Y.
Wu, R.
Jedrzejczak, R.
Brown, R.N.
Cort, J.R.
Heffron, F.
Nakayasu, E.S.
Adkins, J.N.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
Program for the Characterization of Secreted Effector Proteins (PCSEP)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
107.138
107.138
59.935
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C4 H6 O5
134.087
D-MALATE
(2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal Structure of Putative Cytoplasmic Protein, YciF Bacterial Stress Response Protein from Salmonella enterica
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mittors
CCD
2011-03-05
ADSC QUANTUM 315r
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97915
1.0
19-ID
APS
0.97915
SYNCHROTRON
APS BEAMLINE 19-ID
19091.154
YciF Bacterial Stress Response Protein
2
man
polymer
134.087
D-MALATE
2
syn
non-polymer
24.305
MAGNESIUM ION
4
syn
non-polymer
18.015
water
120
nat
water
no
yes
SNA(MSE)NIKTVEDLFIHLLSDTYSAEKQLTKALPKLARATSNEKLSQAFQSHLEETQGQIERIDQIVESESGIKLKR
(MSE)KCVA(MSE)EGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYSKALKLLKETLDEEK
QTDLKLTDLAVSNVNKSAERKSK
SNAMNIKTVEDLFIHLLSDTYSAEKQLTKALPKLARATSNEKLSQAFQSHLEETQGQIERIDQIVESESGIKLKRMKCVA
MEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYSKALKLLKETLDEEKQTDLKLTDLAVSN
VNKSAERKSK
A,B
MCSG-APC101562
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
14028S
sample
yciF, STM14_2092
588858
Salmonella enterica subsp. enterica serovar Typhimurium
511693
Escherichia coli
BL21 magic
plasmid
pMCSG7
1
2.60
52.70
VAPOR DIFFUSION, SITTING DROP
7.0
0.1 M Bis Tris Propane pH 7.0, 2.4 M D/L Malic acid, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
Midwest Center for Structural Genomics
MCSG
PSI:Biology
Program for the Characterization of Secreted Effector Proteins
PCSEP
PSI:Biology
repository
Initial release
1
0
2012-06-06
Y
RCSB
Y
RCSB
2012-04-20
REL
REL
MLT
D-MALATE
MG
MAGNESIUM ION
HOH
water
MLT
171
2
MLT
MLT
201
A
MG
172
3
MG
MG
202
A
MG
173
3
MG
MG
203
A
MLT
171
2
MLT
MLT
201
B
MG
172
3
MG
MG
202
B
MG
173
3
MG
MG
203
B
HOH
1
4
HOH
HOH
301
A
HOH
2
4
HOH
HOH
302
A
HOH
3
4
HOH
HOH
303
A
HOH
4
4
HOH
HOH
304
A
HOH
5
4
HOH
HOH
305
A
HOH
6
4
HOH
HOH
306
A
HOH
14
4
HOH
HOH
307
A
HOH
15
4
HOH
HOH
308
A
HOH
17
4
HOH
HOH
309
A
HOH
19
4
HOH
HOH
310
A
HOH
20
4
HOH
HOH
311
A
HOH
22
4
HOH
HOH
312
A
HOH
23
4
HOH
HOH
313
A
HOH
27
4
HOH
HOH
314
A
HOH
34
4
HOH
HOH
315
A
HOH
36
4
HOH
HOH
316
A
HOH
39
4
HOH
HOH
317
A
HOH
40
4
HOH
HOH
318
A
HOH
43
4
HOH
HOH
319
A
HOH
47
4
HOH
HOH
320
A
HOH
50
4
HOH
HOH
321
A
HOH
55
4
HOH
HOH
322
A
HOH
56
4
HOH
HOH
323
A
HOH
57
4
HOH
HOH
324
A
HOH
59
4
HOH
HOH
325
A
HOH
62
4
HOH
HOH
326
A
HOH
63
4
HOH
HOH
327
A
HOH
65
4
HOH
HOH
328
A
HOH
70
4
HOH
HOH
329
A
HOH
72
4
HOH
HOH
330
A
HOH
82
4
HOH
HOH
331
A
HOH
83
4
HOH
HOH
332
A
HOH
84
4
HOH
HOH
333
A
HOH
85
4
HOH
HOH
334
A
HOH
87
4
HOH
HOH
335
A
HOH
88
4
HOH
HOH
336
A
HOH
90
4
HOH
HOH
337
A
HOH
91
4
HOH
HOH
338
A
HOH
92
4
HOH
HOH
339
A
HOH
93
4
HOH
HOH
340
A
HOH
94
4
HOH
HOH
341
A
HOH
95
4
HOH
HOH
342
A
HOH
96
4
HOH
HOH
343
A
HOH
97
4
HOH
HOH
344
A
HOH
98
4
HOH
HOH
345
A
HOH
99
4
HOH
HOH
346
A
HOH
100
4
HOH
HOH
347
A
HOH
101
4
HOH
HOH
348
A
HOH
115
4
HOH
HOH
349
A
HOH
118
4
HOH
HOH
350
A
HOH
7
4
HOH
HOH
301
B
HOH
8
4
HOH
HOH
302
B
HOH
9
4
HOH
HOH
303
B
HOH
10
4
HOH
HOH
304
B
HOH
11
4
HOH
HOH
305
B
HOH
12
4
HOH
HOH
306
B
HOH
13
4
HOH
HOH
307
B
HOH
16
4
HOH
HOH
308
B
HOH
18
4
HOH
HOH
309
B
HOH
21
4
HOH
HOH
310
B
HOH
24
4
HOH
HOH
311
B
HOH
25
4
HOH
HOH
312
B
HOH
26
4
HOH
HOH
313
B
HOH
28
4
HOH
HOH
314
B
HOH
29
4
HOH
HOH
315
B
HOH
30
4
HOH
HOH
316
B
HOH
31
4
HOH
HOH
317
B
HOH
32
4
HOH
HOH
318
B
HOH
33
4
HOH
HOH
319
B
HOH
35
4
HOH
HOH
320
B
HOH
37
4
HOH
HOH
321
B
HOH
38
4
HOH
HOH
322
B
HOH
41
4
HOH
HOH
323
B
HOH
42
4
HOH
HOH
324
B
HOH
44
4
HOH
HOH
325
B
HOH
45
4
HOH
HOH
326
B
HOH
46
4
HOH
HOH
327
B
HOH
48
4
HOH
HOH
328
B
HOH
49
4
HOH
HOH
329
B
HOH
51
4
HOH
HOH
330
B
HOH
52
4
HOH
HOH
331
B
HOH
53
4
HOH
HOH
332
B
HOH
54
4
HOH
HOH
333
B
HOH
58
4
HOH
HOH
334
B
HOH
60
4
HOH
HOH
335
B
HOH
61
4
HOH
HOH
336
B
HOH
64
4
HOH
HOH
337
B
HOH
66
4
HOH
HOH
338
B
HOH
67
4
HOH
HOH
339
B
HOH
68
4
HOH
HOH
340
B
HOH
69
4
HOH
HOH
341
B
HOH
71
4
HOH
HOH
342
B
HOH
73
4
HOH
HOH
343
B
HOH
74
4
HOH
HOH
344
B
HOH
75
4
HOH
HOH
345
B
HOH
76
4
HOH
HOH
346
B
HOH
77
4
HOH
HOH
347
B
HOH
78
4
HOH
HOH
348
B
HOH
79
4
HOH
HOH
349
B
HOH
80
4
HOH
HOH
350
B
HOH
81
4
HOH
HOH
351
B
HOH
86
4
HOH
HOH
352
B
HOH
89
4
HOH
HOH
353
B
HOH
102
4
HOH
HOH
354
B
HOH
103
4
HOH
HOH
355
B
HOH
104
4
HOH
HOH
356
B
HOH
105
4
HOH
HOH
357
B
HOH
106
4
HOH
HOH
358
B
HOH
107
4
HOH
HOH
359
B
HOH
108
4
HOH
HOH
360
B
HOH
109
4
HOH
HOH
361
B
HOH
110
4
HOH
HOH
362
B
HOH
111
4
HOH
HOH
363
B
HOH
112
4
HOH
HOH
364
B
HOH
113
4
HOH
HOH
365
B
HOH
114
4
HOH
HOH
366
B
HOH
116
4
HOH
HOH
367
B
HOH
117
4
HOH
HOH
368
B
HOH
119
4
HOH
HOH
369
B
HOH
120
4
HOH
HOH
370
B
n
1
-2
A
n
2
-1
A
ALA
0
n
3
ALA
0
A
MSE
1
n
4
MSE
1
A
ASN
2
n
5
ASN
2
A
ILE
3
n
6
ILE
3
A
LYS
4
n
7
LYS
4
A
THR
5
n
8
THR
5
A
VAL
6
n
9
VAL
6
A
GLU
7
n
10
GLU
7
A
ASP
8
n
11
ASP
8
A
LEU
9
n
12
LEU
9
A
PHE
10
n
13
PHE
10
A
ILE
11
n
14
ILE
11
A
HIS
12
n
15
HIS
12
A
LEU
13
n
16
LEU
13
A
LEU
14
n
17
LEU
14
A
SER
15
n
18
SER
15
A
ASP
16
n
19
ASP
16
A
THR
17
n
20
THR
17
A
TYR
18
n
21
TYR
18
A
SER
19
n
22
SER
19
A
ALA
20
n
23
ALA
20
A
GLU
21
n
24
GLU
21
A
LYS
22
n
25
LYS
22
A
GLN
23
n
26
GLN
23
A
LEU
24
n
27
LEU
24
A
THR
25
n
28
THR
25
A
LYS
26
n
29
LYS
26
A
ALA
27
n
30
ALA
27
A
LEU
28
n
31
LEU
28
A
PRO
29
n
32
PRO
29
A
LYS
30
n
33
LYS
30
A
LEU
31
n
34
LEU
31
A
ALA
32
n
35
ALA
32
A
ARG
33
n
36
ARG
33
A
ALA
34
n
37
ALA
34
A
THR
35
n
38
THR
35
A
SER
36
n
39
SER
36
A
ASN
37
n
40
ASN
37
A
GLU
38
n
41
GLU
38
A
LYS
39
n
42
LYS
39
A
LEU
40
n
43
LEU
40
A
SER
41
n
44
SER
41
A
GLN
42
n
45
GLN
42
A
ALA
43
n
46
ALA
43
A
PHE
44
n
47
PHE
44
A
GLN
45
n
48
GLN
45
A
SER
46
n
49
SER
46
A
HIS
47
n
50
HIS
47
A
LEU
48
n
51
LEU
48
A
GLU
49
n
52
GLU
49
A
GLU
50
n
53
GLU
50
A
THR
51
n
54
THR
51
A
GLN
52
n
55
GLN
52
A
GLY
53
n
56
GLY
53
A
GLN
54
n
57
GLN
54
A
ILE
55
n
58
ILE
55
A
GLU
56
n
59
GLU
56
A
ARG
57
n
60
ARG
57
A
ILE
58
n
61
ILE
58
A
ASP
59
n
62
ASP
59
A
GLN
60
n
63
GLN
60
A
ILE
61
n
64
ILE
61
A
VAL
62
n
65
VAL
62
A
GLU
63
n
66
GLU
63
A
SER
64
n
67
SER
64
A
GLU
65
n
68
GLU
65
A
SER
66
n
69
SER
66
A
GLY
67
n
70
GLY
67
A
ILE
68
n
71
ILE
68
A
LYS
69
n
72
LYS
69
A
LEU
70
n
73
LEU
70
A
LYS
71
n
74
LYS
71
A
ARG
72
n
75
ARG
72
A
MSE
73
n
76
MSE
73
A
LYS
74
n
77
LYS
74
A
CYS
75
n
78
CYS
75
A
VAL
76
n
79
VAL
76
A
ALA
77
n
80
ALA
77
A
MSE
78
n
81
MSE
78
A
GLU
79
n
82
GLU
79
A
GLY
80
n
83
GLY
80
A
LEU
81
n
84
LEU
81
A
ILE
82
n
85
ILE
82
A
GLU
83
n
86
GLU
83
A
GLU
84
n
87
GLU
84
A
ALA
85
n
88
ALA
85
A
ASN
86
n
89
ASN
86
A
GLU
87
n
90
GLU
87
A
VAL
88
n
91
VAL
88
A
ILE
89
n
92
ILE
89
A
GLU
90
n
93
GLU
90
A
SER
91
n
94
SER
91
A
THR
92
n
95
THR
92
A
GLU
93
n
96
GLU
93
A
LYS
94
n
97
LYS
94
A
ASN
95
n
98
ASN
95
A
GLU
96
n
99
GLU
96
A
VAL
97
n
100
VAL
97
A
ARG
98
n
101
ARG
98
A
ASP
99
n
102
ASP
99
A
ALA
100
n
103
ALA
100
A
ALA
101
n
104
ALA
101
A
LEU
102
n
105
LEU
102
A
ILE
103
n
106
ILE
103
A
ALA
104
n
107
ALA
104
A
ALA
105
n
108
ALA
105
A
ALA
106
n
109
ALA
106
A
GLN
107
n
110
GLN
107
A
LYS
108
n
111
LYS
108
A
VAL
109
n
112
VAL
109
A
GLU
110
n
113
GLU
110
A
HIS
111
n
114
HIS
111
A
TYR
112
n
115
TYR
112
A
GLU
113
n
116
GLU
113
A
ILE
114
n
117
ILE
114
A
ALA
115
n
118
ALA
115
A
SER
116
n
119
SER
116
A
TYR
117
n
120
TYR
117
A
GLY
118
n
121
GLY
118
A
THR
119
n
122
THR
119
A
LEU
120
n
123
LEU
120
A
ALA
121
n
124
ALA
121
A
THR
122
n
125
THR
122
A
LEU
123
n
126
LEU
123
A
ALA
124
n
127
ALA
124
A
GLU
125
n
128
GLU
125
A
GLN
126
n
129
GLN
126
A
LEU
127
n
130
LEU
127
A
GLY
128
n
131
GLY
128
A
TYR
129
n
132
TYR
129
A
SER
130
n
133
SER
130
A
LYS
131
n
134
LYS
131
A
ALA
132
n
135
ALA
132
A
LEU
133
n
136
LEU
133
A
LYS
134
n
137
LYS
134
A
LEU
135
n
138
LEU
135
A
LEU
136
n
139
LEU
136
A
LYS
137
n
140
LYS
137
A
GLU
138
n
141
GLU
138
A
THR
139
n
142
THR
139
A
LEU
140
n
143
LEU
140
A
ASP
141
n
144
ASP
141
A
GLU
142
n
145
GLU
142
A
GLU
143
n
146
GLU
143
A
LYS
144
n
147
LYS
144
A
GLN
145
n
148
GLN
145
A
THR
146
n
149
THR
146
A
ASP
147
n
150
ASP
147
A
LEU
148
n
151
LEU
148
A
LYS
149
n
152
LYS
149
A
LEU
150
n
153
LEU
150
A
THR
151
n
154
THR
151
A
ASP
152
n
155
ASP
152
A
LEU
153
n
156
LEU
153
A
ALA
154
n
157
ALA
154
A
VAL
155
n
158
VAL
155
A
SER
156
n
159
SER
156
A
ASN
157
n
160
ASN
157
A
VAL
158
n
161
VAL
158
A
n
162
159
A
n
163
160
A
n
164
161
A
n
165
162
A
n
166
163
A
n
167
164
A
n
168
165
A
n
169
166
A
n
170
167
A
n
1
-2
B
n
2
-1
B
n
3
0
B
MSE
1
n
4
MSE
1
B
ASN
2
n
5
ASN
2
B
ILE
3
n
6
ILE
3
B
LYS
4
n
7
LYS
4
B
THR
5
n
8
THR
5
B
VAL
6
n
9
VAL
6
B
GLU
7
n
10
GLU
7
B
ASP
8
n
11
ASP
8
B
LEU
9
n
12
LEU
9
B
PHE
10
n
13
PHE
10
B
ILE
11
n
14
ILE
11
B
HIS
12
n
15
HIS
12
B
LEU
13
n
16
LEU
13
B
LEU
14
n
17
LEU
14
B
SER
15
n
18
SER
15
B
ASP
16
n
19
ASP
16
B
THR
17
n
20
THR
17
B
TYR
18
n
21
TYR
18
B
SER
19
n
22
SER
19
B
ALA
20
n
23
ALA
20
B
GLU
21
n
24
GLU
21
B
LYS
22
n
25
LYS
22
B
GLN
23
n
26
GLN
23
B
LEU
24
n
27
LEU
24
B
THR
25
n
28
THR
25
B
LYS
26
n
29
LYS
26
B
ALA
27
n
30
ALA
27
B
LEU
28
n
31
LEU
28
B
PRO
29
n
32
PRO
29
B
LYS
30
n
33
LYS
30
B
LEU
31
n
34
LEU
31
B
ALA
32
n
35
ALA
32
B
ARG
33
n
36
ARG
33
B
ALA
34
n
37
ALA
34
B
THR
35
n
38
THR
35
B
SER
36
n
39
SER
36
B
ASN
37
n
40
ASN
37
B
GLU
38
n
41
GLU
38
B
LYS
39
n
42
LYS
39
B
LEU
40
n
43
LEU
40
B
SER
41
n
44
SER
41
B
GLN
42
n
45
GLN
42
B
ALA
43
n
46
ALA
43
B
PHE
44
n
47
PHE
44
B
GLN
45
n
48
GLN
45
B
SER
46
n
49
SER
46
B
HIS
47
n
50
HIS
47
B
LEU
48
n
51
LEU
48
B
GLU
49
n
52
GLU
49
B
GLU
50
n
53
GLU
50
B
THR
51
n
54
THR
51
B
GLN
52
n
55
GLN
52
B
GLY
53
n
56
GLY
53
B
GLN
54
n
57
GLN
54
B
ILE
55
n
58
ILE
55
B
GLU
56
n
59
GLU
56
B
ARG
57
n
60
ARG
57
B
ILE
58
n
61
ILE
58
B
ASP
59
n
62
ASP
59
B
GLN
60
n
63
GLN
60
B
ILE
61
n
64
ILE
61
B
VAL
62
n
65
VAL
62
B
GLU
63
n
66
GLU
63
B
SER
64
n
67
SER
64
B
GLU
65
n
68
GLU
65
B
SER
66
n
69
SER
66
B
GLY
67
n
70
GLY
67
B
ILE
68
n
71
ILE
68
B
LYS
69
n
72
LYS
69
B
LEU
70
n
73
LEU
70
B
LYS
71
n
74
LYS
71
B
ARG
72
n
75
ARG
72
B
MSE
73
n
76
MSE
73
B
LYS
74
n
77
LYS
74
B
CYS
75
n
78
CYS
75
B
VAL
76
n
79
VAL
76
B
ALA
77
n
80
ALA
77
B
MSE
78
n
81
MSE
78
B
GLU
79
n
82
GLU
79
B
GLY
80
n
83
GLY
80
B
LEU
81
n
84
LEU
81
B
ILE
82
n
85
ILE
82
B
GLU
83
n
86
GLU
83
B
GLU
84
n
87
GLU
84
B
ALA
85
n
88
ALA
85
B
ASN
86
n
89
ASN
86
B
GLU
87
n
90
GLU
87
B
VAL
88
n
91
VAL
88
B
ILE
89
n
92
ILE
89
B
GLU
90
n
93
GLU
90
B
SER
91
n
94
SER
91
B
THR
92
n
95
THR
92
B
GLU
93
n
96
GLU
93
B
LYS
94
n
97
LYS
94
B
ASN
95
n
98
ASN
95
B
GLU
96
n
99
GLU
96
B
VAL
97
n
100
VAL
97
B
ARG
98
n
101
ARG
98
B
ASP
99
n
102
ASP
99
B
ALA
100
n
103
ALA
100
B
ALA
101
n
104
ALA
101
B
LEU
102
n
105
LEU
102
B
ILE
103
n
106
ILE
103
B
ALA
104
n
107
ALA
104
B
ALA
105
n
108
ALA
105
B
ALA
106
n
109
ALA
106
B
GLN
107
n
110
GLN
107
B
LYS
108
n
111
LYS
108
B
VAL
109
n
112
VAL
109
B
GLU
110
n
113
GLU
110
B
HIS
111
n
114
HIS
111
B
TYR
112
n
115
TYR
112
B
GLU
113
n
116
GLU
113
B
ILE
114
n
117
ILE
114
B
ALA
115
n
118
ALA
115
B
SER
116
n
119
SER
116
B
TYR
117
n
120
TYR
117
B
GLY
118
n
121
GLY
118
B
THR
119
n
122
THR
119
B
LEU
120
n
123
LEU
120
B
ALA
121
n
124
ALA
121
B
THR
122
n
125
THR
122
B
LEU
123
n
126
LEU
123
B
ALA
124
n
127
ALA
124
B
GLU
125
n
128
GLU
125
B
GLN
126
n
129
GLN
126
B
LEU
127
n
130
LEU
127
B
GLY
128
n
131
GLY
128
B
TYR
129
n
132
TYR
129
B
SER
130
n
133
SER
130
B
LYS
131
n
134
LYS
131
B
ALA
132
n
135
ALA
132
B
LEU
133
n
136
LEU
133
B
LYS
134
n
137
LYS
134
B
LEU
135
n
138
LEU
135
B
LEU
136
n
139
LEU
136
B
LYS
137
n
140
LYS
137
B
GLU
138
n
141
GLU
138
B
THR
139
n
142
THR
139
B
LEU
140
n
143
LEU
140
B
ASP
141
n
144
ASP
141
B
GLU
142
n
145
GLU
142
B
GLU
143
n
146
GLU
143
B
LYS
144
n
147
LYS
144
B
GLN
145
n
148
GLN
145
B
THR
146
n
149
THR
146
B
ASP
147
n
150
ASP
147
B
LEU
148
n
151
LEU
148
B
LYS
149
n
152
LYS
149
B
LEU
150
n
153
LEU
150
B
THR
151
n
154
THR
151
B
ASP
152
n
155
ASP
152
B
LEU
153
n
156
LEU
153
B
ALA
154
n
157
ALA
154
B
VAL
155
n
158
VAL
155
B
SER
156
n
159
SER
156
B
ASN
157
n
160
ASN
157
B
VAL
158
n
161
VAL
158
B
n
162
159
B
n
163
160
B
n
164
161
B
n
165
162
B
n
166
163
B
n
167
164
B
n
168
165
B
n
169
166
B
n
170
167
B
3.4497
2.0228
1.0888
2.5078
1.4360
4.6110
0.0371
-0.4547
0.5610
0.0437
-0.3182
0.3683
-0.4922
-0.2987
0.1779
0.3962
-0.0084
-0.0039
0.4476
-0.0277
0.3966
refined
-28.7046
66.8030
4.3152
X-RAY DIFFRACTION
2.9379
0.9918
1.0285
2.5413
-0.2252
4.4452
0.0603
-0.1566
0.0425
0.0831
-0.1947
0.0521
-0.0449
-0.4557
0.1021
0.3480
-0.0083
0.0164
0.4665
-0.0283
0.4382
refined
-31.4036
58.9471
-2.6501
X-RAY DIFFRACTION
1.9242
1.1926
0.5994
1.9100
-0.0375
5.3385
0.0142
-0.1757
-0.1202
0.1884
-0.2033
-0.1118
0.0514
0.1124
0.0649
0.3162
0.0046
-0.0008
0.3719
0.0141
0.3817
refined
-22.1852
62.3523
-4.3252
X-RAY DIFFRACTION
2.1117
0.0343
0.0958
2.9447
0.6141
5.7411
0.1031
-0.2020
-0.3393
0.1754
-0.1379
-0.4066
0.7098
0.4227
0.0578
0.3837
0.0029
-0.0178
0.4210
0.0910
0.5159
refined
-18.9835
55.0132
-1.7760
X-RAY DIFFRACTION
0.8630
1.4185
1.0849
4.3791
2.0384
4.0097
-0.1323
-0.0825
0.3009
-0.4659
-0.2746
0.5684
-0.3302
-0.5849
0.2719
0.4242
0.0221
-0.0326
0.4368
-0.0146
0.4007
refined
-22.5560
73.9775
-18.3421
X-RAY DIFFRACTION
2.5096
1.0106
-0.0276
3.1942
1.5044
3.6621
-0.1292
-0.0538
0.0670
-0.1814
-0.0362
0.0614
-0.4413
-0.1725
0.1637
0.4810
0.0008
-0.0525
0.3849
0.0382
0.4697
refined
-15.8795
78.4694
-11.6571
X-RAY DIFFRACTION
1.2141
0.9079
0.3384
2.7788
0.9964
4.2307
-0.0057
-0.1622
-0.0872
0.0323
-0.2133
-0.1242
-0.0046
0.0247
0.0777
0.2887
-0.0170
-0.0152
0.3872
0.0153
0.3887
refined
-16.7206
69.3191
-8.4977
X-RAY DIFFRACTION
2.0485
1.3751
1.0146
3.2381
0.6102
5.4993
0.0519
-0.1162
-0.3746
0.0311
0.0265
-0.6892
-0.0971
0.5913
0.0274
0.3778
0.0205
-0.0025
0.4564
0.0241
0.5474
refined
-8.6574
67.5800
-11.2053
X-RAY DIFFRACTION
A
0
A
34
X-RAY DIFFRACTION
1
chain 'A' and (resseq 0:34)
A
35
A
95
X-RAY DIFFRACTION
2
chain 'A' and (resseq 35:95)
A
96
A
127
X-RAY DIFFRACTION
3
chain 'A' and (resseq 96:127)
A
128
A
158
X-RAY DIFFRACTION
4
chain 'A' and (resseq 128:158)
B
1
B
34
X-RAY DIFFRACTION
5
chain 'B' and (resseq 1:34)
B
35
B
95
X-RAY DIFFRACTION
6
chain 'B' and (resseq 35:95)
B
96
B
127
X-RAY DIFFRACTION
7
chain 'B' and (resseq 96:127)
B
128
B
158
X-RAY DIFFRACTION
8
chain 'B' and (resseq 128:158)
author_and_software_defined_assembly
PISA
2
dimeric
3470
-45
14090
A
HOH
335
I
O
HOH
1_555
A
MG
202
D
MG
MG
1_555
A
GLU
113
A
OE1
GLU
116
1_555
89.2
A
HOH
335
I
O
HOH
1_555
A
MG
202
D
MG
MG
1_555
A
GLU
110
A
OE2
GLU
113
1_555
151.0
A
GLU
113
A
OE1
GLU
116
1_555
A
MG
202
D
MG
MG
1_555
A
GLU
110
A
OE2
GLU
113
1_555
116.6
A
HOH
335
I
O
HOH
1_555
A
MG
202
D
MG
MG
1_555
A
GLU
143
A
OE1
GLU
146
1_555
85.0
A
GLU
113
A
OE1
GLU
116
1_555
A
MG
202
D
MG
MG
1_555
A
GLU
143
A
OE1
GLU
146
1_555
99.1
A
GLU
110
A
OE2
GLU
113
1_555
A
MG
202
D
MG
MG
1_555
A
GLU
143
A
OE1
GLU
146
1_555
102.6
B
GLU
143
B
OE1
GLU
146
1_555
B
MG
202
G
MG
MG
1_555
B
HOH
352
J
O
HOH
1_555
110.4
B
GLU
143
B
OE1
GLU
146
1_555
B
MG
202
G
MG
MG
1_555
B
GLN
54
B
OE1
GLN
57
1_555
100.9
B
HOH
352
J
O
HOH
1_555
B
MG
202
G
MG
MG
1_555
B
GLN
54
B
OE1
GLN
57
1_555
90.0
B
GLU
143
B
OE1
GLU
146
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
21
B
OE2
GLU
24
1_555
105.2
B
HOH
352
J
O
HOH
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
21
B
OE2
GLU
24
1_555
138.6
B
GLN
54
B
OE1
GLN
57
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
21
B
OE2
GLU
24
1_555
103.4
B
GLU
143
B
OE1
GLU
146
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
21
B
OE1
GLU
24
1_555
134.9
B
HOH
352
J
O
HOH
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
21
B
OE1
GLU
24
1_555
85.7
B
GLN
54
B
OE1
GLN
57
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
21
B
OE1
GLU
24
1_555
121.6
B
GLU
21
B
OE2
GLU
24
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
21
B
OE1
GLU
24
1_555
53.8
B
GLU
143
B
OE1
GLU
146
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
113
B
OE1
GLU
116
1_555
68.5
B
HOH
352
J
O
HOH
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
113
B
OE1
GLU
116
1_555
67.5
B
GLN
54
B
OE1
GLN
57
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
113
B
OE1
GLU
116
1_555
147.8
B
GLU
21
B
OE2
GLU
24
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
113
B
OE1
GLU
116
1_555
108.7
B
GLU
21
B
OE1
GLU
24
1_555
B
MG
202
G
MG
MG
1_555
B
GLU
113
B
OE1
GLU
116
1_555
80.9
A
HOH
335
I
O
HOH
1_555
A
MG
203
E
MG
MG
1_555
A
GLN
54
A
OE1
GLN
57
1_555
89.9
A
HOH
335
I
O
HOH
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
21
A
OE1
GLU
24
1_555
138.3
A
GLN
54
A
OE1
GLN
57
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
21
A
OE1
GLU
24
1_555
101.6
A
HOH
335
I
O
HOH
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
143
A
OE2
GLU
146
1_555
109.6
A
GLN
54
A
OE1
GLN
57
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
143
A
OE2
GLU
146
1_555
97.4
A
GLU
21
A
OE1
GLU
24
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
143
A
OE2
GLU
146
1_555
108.5
A
HOH
335
I
O
HOH
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
21
A
OE2
GLU
24
1_555
85.2
A
GLN
54
A
OE1
GLN
57
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
21
A
OE2
GLU
24
1_555
122.0
A
GLU
21
A
OE1
GLU
24
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
21
A
OE2
GLU
24
1_555
54.6
A
GLU
143
A
OE2
GLU
146
1_555
A
MG
203
E
MG
MG
1_555
A
GLU
21
A
OE2
GLU
24
1_555
138.4
B
HOH
352
J
O
HOH
1_555
B
MG
203
H
MG
MG
1_555
B
GLU
113
B
OE1
GLU
116
1_555
79.2
B
HOH
352
J
O
HOH
1_555
B
MG
203
H
MG
MG
1_555
B
GLU
110
B
OE2
GLU
113
1_555
155.3
B
GLU
113
B
OE1
GLU
116
1_555
B
MG
203
H
MG
MG
1_555
B
GLU
110
B
OE2
GLU
113
1_555
115.7
B
HOH
352
J
O
HOH
1_555
B
MG
203
H
MG
MG
1_555
B
GLU
143
B
OE2
GLU
146
1_555
97.0
B
GLU
113
B
OE1
GLU
116
1_555
B
MG
203
H
MG
MG
1_555
B
GLU
143
B
OE2
GLU
146
1_555
87.5
B
GLU
110
B
OE2
GLU
113
1_555
B
MG
203
H
MG
MG
1_555
B
GLU
143
B
OE2
GLU
146
1_555
103.1
A
MSE
1
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
73
SELENOMETHIONINE
A
MSE
76
MET
A
MSE
78
SELENOMETHIONINE
A
MSE
81
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
4
MET
B
MSE
73
SELENOMETHIONINE
B
MSE
76
MET
B
MSE
78
SELENOMETHIONINE
B
MSE
81
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ASN
159
A
ASN
162
1
Y
1
A
LYS
160
A
LYS
163
1
Y
1
A
SER
161
A
SER
164
1
Y
1
A
ALA
162
A
ALA
165
1
Y
1
A
GLU
163
A
GLU
166
1
Y
1
A
ARG
164
A
ARG
167
1
Y
1
A
LYS
165
A
LYS
168
1
Y
1
A
SER
166
A
SER
169
1
Y
1
A
LYS
167
A
LYS
170
1
Y
1
B
SER
-2
B
SER
1
1
Y
1
B
ASN
-1
B
ASN
2
1
Y
1
B
ALA
0
B
ALA
3
1
Y
1
B
ASN
159
B
ASN
162
1
Y
1
B
LYS
160
B
LYS
163
1
Y
1
B
SER
161
B
SER
164
1
Y
1
B
ALA
162
B
ALA
165
1
Y
1
B
GLU
163
B
GLU
166
1
Y
1
B
ARG
164
B
ARG
167
1
Y
1
B
LYS
165
B
LYS
168
1
Y
1
B
SER
166
B
SER
169
1
Y
1
B
LYS
167
B
LYS
170
1
Y
54.1
7.0748
-0.0000
-0.0000
7.0748
0.0000
-14.1495
0.222
0.173
0.175
0.175
2.100
36.686
1182
22997
22997
5.14
99.88
0.20
random
1
mixed
THROUGHOUT
0.0
SAD
20.81
0.98
1.20
MLHL
FLAT BULK SOLVENT MODEL
55.545
0.370
2.100
36.686
120
2615
22
0
2473
0.015
2701
1.371
3661
17.875
1059
0.088
427
0.006
488
0.2580
0.2114
2.1960
161
2702
2863
100.00
0.2603
0.1874
2.3117
139
2695
2834
100.00
0.2154
0.1829
2.4565
152
2710
2862
100.00
0.2238
0.1725
2.6462
141
2708
2849
100.00
0.2546
0.1921
2.9123
170
2708
2878
100.00
0.2482
0.1783
3.3335
147
2735
2882
100.00
0.1993
0.1574
4.1989
136
2754
2890
100.00
0.2045
0.1686
36.6916
136
2803
2939
100.00
39.56
2.1
50
4ERU
23043
23043
0.0
0.0
0.080
1
10.8
9.2
100
2.1
2.14
2.4
1152
0.634
1
8.0
100
data collection
SBC-Collect
data collection
HKL-3000
phasing
HKL-3000
phasing
SHELXS
phasing
MLPHARE
model building
BUCCANEER
refinement
PHENIX
(phenix.refine: 1.7.3_920)
data reduction
HKL-3000
data scaling
HKL-3000
phasing
BUCCANEER
YciF Bacterial Stress Response Protein
Crystal Structure of Putative Cytoplasmic Protein, YciF Bacterial Stress Response Protein from Salmonella enterica
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
THR
5
A
THR
8
HELX_P
A
THR
35
A
THR
38
1
1
31
A
ASN
37
A
ASN
40
HELX_P
A
SER
64
A
SER
67
1
2
28
A
CYS
75
A
CYS
78
HELX_P
A
SER
91
A
SER
94
1
3
17
A
ASN
95
A
ASN
98
HELX_P
A
GLY
128
A
GLY
131
1
4
34
A
TYR
129
A
TYR
132
HELX_P
A
ASN
157
A
ASN
160
1
5
29
B
THR
5
B
THR
8
HELX_P
B
THR
35
B
THR
38
1
6
31
B
ASN
37
B
ASN
40
HELX_P
B
SER
64
B
SER
67
1
7
28
B
CYS
75
B
CYS
78
HELX_P
B
SER
91
B
SER
94
1
8
17
B
ASN
95
B
ASN
98
HELX_P
B
GLY
128
B
GLY
131
1
9
34
B
TYR
129
B
TYR
132
HELX_P
B
SER
156
B
SER
159
1
10
28
covale
1.334
A
ALA
0
A
C
ALA
3
1_555
A
MSE
1
A
N
MSE
4
1_555
covale
1.334
A
MSE
1
A
C
MSE
4
1_555
A
ASN
2
A
N
ASN
5
1_555
covale
1.331
A
ARG
72
A
C
ARG
75
1_555
A
MSE
73
A
N
MSE
76
1_555
covale
1.331
A
MSE
73
A
C
MSE
76
1_555
A
LYS
74
A
N
LYS
77
1_555
covale
1.327
A
ALA
77
A
C
ALA
80
1_555
A
MSE
78
A
N
MSE
81
1_555
covale
1.331
A
MSE
78
A
C
MSE
81
1_555
A
GLU
79
A
N
GLU
82
1_555
covale
1.335
B
MSE
1
B
C
MSE
4
1_555
B
ASN
2
B
N
ASN
5
1_555
covale
1.325
B
ARG
72
B
C
ARG
75
1_555
B
MSE
73
B
N
MSE
76
1_555
covale
1.327
B
MSE
73
B
C
MSE
76
1_555
B
LYS
74
B
N
LYS
77
1_555
covale
1.327
B
ALA
77
B
C
ALA
80
1_555
B
MSE
78
B
N
MSE
81
1_555
covale
1.332
B
MSE
78
B
C
MSE
81
1_555
B
GLU
79
B
N
GLU
82
1_555
metalc
2.047
A
MG
202
D
MG
MG
1_555
A
HOH
335
I
O
HOH
1_555
metalc
2.091
B
GLU
143
B
OE1
GLU
146
1_555
B
MG
202
G
MG
MG
1_555
metalc
2.117
B
MG
202
G
MG
MG
1_555
B
HOH
352
J
O
HOH
1_555
metalc
2.152
A
GLU
113
A
OE1
GLU
116
1_555
A
MG
202
D
MG
MG
1_555
metalc
2.154
A
MG
203
E
MG
MG
1_555
A
HOH
335
I
O
HOH
1_555
metalc
2.183
A
GLN
54
A
OE1
GLN
57
1_555
A
MG
203
E
MG
MG
1_555
metalc
2.211
B
MG
203
H
MG
MG
1_555
B
HOH
352
J
O
HOH
1_555
metalc
2.216
B
GLN
54
B
OE1
GLN
57
1_555
B
MG
202
G
MG
MG
1_555
metalc
2.230
B
GLU
113
B
OE1
GLU
116
1_555
B
MG
203
H
MG
MG
1_555
metalc
2.232
A
GLU
110
A
OE2
GLU
113
1_555
A
MG
202
D
MG
MG
1_555
metalc
2.258
B
GLU
110
B
OE2
GLU
113
1_555
B
MG
203
H
MG
MG
1_555
metalc
2.290
B
GLU
21
B
OE2
GLU
24
1_555
B
MG
202
G
MG
MG
1_555
metalc
2.344
A
GLU
21
A
OE1
GLU
24
1_555
A
MG
203
E
MG
MG
1_555
metalc
2.368
A
GLU
143
A
OE2
GLU
146
1_555
A
MG
203
E
MG
MG
1_555
metalc
2.373
B
GLU
143
B
OE2
GLU
146
1_555
B
MG
203
H
MG
MG
1_555
metalc
2.432
A
GLU
21
A
OE2
GLU
24
1_555
A
MG
203
E
MG
MG
1_555
metalc
2.457
A
GLU
143
A
OE1
GLU
146
1_555
A
MG
202
D
MG
MG
1_555
metalc
2.550
B
GLU
21
B
OE1
GLU
24
1_555
B
MG
202
G
MG
MG
1_555
metalc
2.856
B
GLU
113
B
OE1
GLU
116
1_555
B
MG
202
G
MG
MG
1_555
Structural Genomics, Unknown Function
Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Program for the Characterization of Secreted Effector Proteins, PCSEP, helix-bundle, ferritin-like domain, Unknown Function
D0ZIZ7_SALT1
UNP
1
1
D0ZIZ7
MNIKTVEDLFIHLLSDTYSAEKQLTKALPKLARATSNEKLSQAFQSHLEETQGQIERIDQIVESESGIKLKRMKCVAMEG
LIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYSKALKLLKETLDEEKQTDLKLTDLAVSNVNK
SAERKSK
1
167
4ERU
1
167
D0ZIZ7
A
1
4
170
1
167
4ERU
1
167
D0ZIZ7
B
1
4
170
1
EXPRESSION TAG
SER
-2
4ERU
A
D0ZIZ7
UNP
1
1
EXPRESSION TAG
ASN
-1
4ERU
A
D0ZIZ7
UNP
2
1
EXPRESSION TAG
ALA
0
4ERU
A
D0ZIZ7
UNP
3
2
EXPRESSION TAG
SER
-2
4ERU
B
D0ZIZ7
UNP
1
2
EXPRESSION TAG
ASN
-1
4ERU
B
D0ZIZ7
UNP
2
2
EXPRESSION TAG
ALA
0
4ERU
B
D0ZIZ7
UNP
3
BINDING SITE FOR RESIDUE MLT A 201
Software
6
BINDING SITE FOR RESIDUE MG A 202
Software
7
BINDING SITE FOR RESIDUE MG A 203
Software
6
BINDING SITE FOR RESIDUE MLT B 201
Software
6
BINDING SITE FOR RESIDUE MG B 202
Software
6
BINDING SITE FOR RESIDUE MG B 203
Software
6
A
LYS
30
A
LYS
33
6
1_555
A
ARG
33
A
ARG
36
6
1_555
A
ILE
89
A
ILE
92
6
1_555
A
ARG
98
A
ARG
101
6
1_555
A
HOH
349
I
HOH
6
1_555
B
LYS
22
B
LYS
25
6
5_455
A
LEU
24
A
LEU
27
7
1_555
A
HIS
47
A
HIS
50
7
1_555
A
GLU
110
A
GLU
113
7
1_555
A
GLU
113
A
GLU
116
7
1_555
A
GLU
143
A
GLU
146
7
1_555
A
MG
203
E
MG
7
1_555
A
HOH
335
I
HOH
7
1_555
A
GLU
21
A
GLU
24
6
1_555
A
GLN
54
A
GLN
57
6
1_555
A
GLU
113
A
GLU
116
6
1_555
A
GLU
143
A
GLU
146
6
1_555
A
MG
202
D
MG
6
1_555
A
HOH
335
I
HOH
6
1_555
A
TYR
18
A
TYR
21
6
6_664
A
LYS
22
A
LYS
25
6
6_664
B
LYS
30
B
LYS
33
6
1_555
B
ARG
33
B
ARG
36
6
1_555
B
ALA
34
B
ALA
37
6
1_555
B
ARG
98
B
ARG
101
6
1_555
B
GLU
21
B
GLU
24
6
1_555
B
GLN
54
B
GLN
57
6
1_555
B
GLU
113
B
GLU
116
6
1_555
B
GLU
143
B
GLU
146
6
1_555
B
MG
203
H
MG
6
1_555
B
HOH
352
J
HOH
6
1_555
B
HIS
47
B
HIS
50
6
1_555
B
GLU
110
B
GLU
113
6
1_555
B
GLU
113
B
GLU
116
6
1_555
B
GLU
143
B
GLU
146
6
1_555
B
MG
202
G
MG
6
1_555
B
HOH
352
J
HOH
6
1_555
170
P 65