0.015168
0.000000
0.000000
0.000000
0.015168
0.000000
0.000000
0.000000
0.011203
0.00000
0.00000
0.00000
Kuzin, A.
Su, M.
Seetharaman, J.
Kornhaber, K.
Kornhaber, G.
Rajagopalan, S.
Baker, D.
Everett, J.K.
Acton, T.B.
Montelione, G.T.
Tong, L.
Hunt, J.F.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
65.930
65.930
89.260
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C16 H34 O8
354.436
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
POLYETHYLENE GLYCOL PEG4000
non-polymer
C18 H38 O9
398.489
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE GLYCOL PEG400
non-polymer
C12 H27 O10 P
362.311
PHOSPHORYL-HEXAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
C
N
375
N
O
N
376
N
P
N
377
N
O
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
O
N
387
N
O
N
388
N
C
N
389
N
C
N
390
N
O
N
391
N
C
N
392
N
C
N
393
N
O
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
N
452
N
C
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
N
469
N
O
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
N
N
479
S
C
N
480
N
C
N
481
N
O
N
482
R
C
N
483
N
O
N
484
N
C
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
N
N
496
S
C
N
497
N
C
N
498
N
O
N
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
Y
503
N
N
Y
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
N
509
N
O
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
N
N
523
S
C
N
524
N
C
N
525
N
O
N
526
N
C
Y
527
N
C
Y
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
N
533
N
O
N
534
N
O
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
N
N
547
S
C
N
548
N
C
N
549
N
O
N
550
N
C
N
551
N
C
N
552
N
C
N
553
N
O
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
Y
418
N
doub
Y
419
N
sing
Y
420
N
sing
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
doub
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
Y
487
N
doub
Y
488
N
sing
Y
489
N
sing
N
490
N
sing
Y
491
N
doub
Y
492
N
sing
Y
493
N
sing
N
494
N
sing
Y
495
N
sing
Y
496
N
doub
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
doub
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
Y
515
N
doub
Y
516
N
sing
Y
517
N
sing
N
518
N
sing
Y
519
N
doub
N
520
N
sing
Y
521
N
doub
N
522
N
sing
Y
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
doub
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
US
Nat.Chem.Biol.
1552-4450
10
386
391
10.1038/nchembio.1498
24705591
Design of activated serine-containing catalytic triads with atomic-level accuracy.
2014
10.2210/pdb4etj/pdb
pdb_00004etj
100
1
MIRROR
CCD
2012-03-21
MAR CCD 165 mm
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.97925
1.0
X4C
NSLS
0.97925
SYNCHROTRON
NSLS BEAMLINE X4C
17684.277
Serine hydrolase
E6H
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
354.436
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
1
syn
non-polymer
398.489
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
1
syn
non-polymer
362.311
PHOSPHORYL-HEXAETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
37
nat
water
no
no
MARIRHVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLG
DEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVMLEEIKKAPDTLEVTGVHGTEKSAEAARRALL
EHHHHHH
MARIRHVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLG
DEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVMLEEIKKAPDTLEVTGVHGTEKSAEAARRALL
EHHHHHH
A
NESG-OR185
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
32630
artificial gene
1
2.74
55.15
7
Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl (pH 7.5), Reservoir solution: 0.1M MgCl2, 0.1M Bis-Tris, 80% PEG400, microbatch under oil, temperature 293KK
293
Northeast Structural Genomics Consortium
NESG
PSI:Biology
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2012-06-13
1
1
2014-04-16
1
2
2014-05-14
1
3
2023-09-13
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
99.4% identity
Y
RCSB
Y
RCSB
2012-04-24
REL
REL
CL
CHLORIDE ION
PE4
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
PE5
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
PE6
PHOSPHORYL-HEXAETHYLENE GLYCOL
HOH
water
3V45
PDB
experimental model
CL
2
2
CL
CL
201
A
PE4
1
3
PE4
PE4
202
A
PE5
1
4
PE5
PE5
203
A
PE6
1
5
PE6
PE6
204
A
HOH
201
6
HOH
HOH
301
A
HOH
202
6
HOH
HOH
302
A
HOH
203
6
HOH
HOH
303
A
HOH
204
6
HOH
HOH
304
A
HOH
205
6
HOH
HOH
305
A
HOH
206
6
HOH
HOH
306
A
HOH
207
6
HOH
HOH
307
A
HOH
208
6
HOH
HOH
308
A
HOH
209
6
HOH
HOH
309
A
HOH
210
6
HOH
HOH
310
A
HOH
211
6
HOH
HOH
311
A
HOH
212
6
HOH
HOH
312
A
HOH
213
6
HOH
HOH
313
A
HOH
214
6
HOH
HOH
314
A
HOH
220
6
HOH
HOH
315
A
HOH
221
6
HOH
HOH
316
A
HOH
222
6
HOH
HOH
317
A
HOH
223
6
HOH
HOH
318
A
HOH
224
6
HOH
HOH
319
A
HOH
225
6
HOH
HOH
320
A
HOH
226
6
HOH
HOH
321
A
HOH
227
6
HOH
HOH
322
A
HOH
228
6
HOH
HOH
323
A
HOH
229
6
HOH
HOH
324
A
HOH
230
6
HOH
HOH
325
A
HOH
231
6
HOH
HOH
326
A
HOH
232
6
HOH
HOH
327
A
HOH
233
6
HOH
HOH
328
A
HOH
234
6
HOH
HOH
329
A
HOH
235
6
HOH
HOH
330
A
HOH
236
6
HOH
HOH
331
A
HOH
237
6
HOH
HOH
332
A
HOH
238
6
HOH
HOH
333
A
HOH
239
6
HOH
HOH
334
A
HOH
240
6
HOH
HOH
335
A
HOH
241
6
HOH
HOH
336
A
HOH
244
6
HOH
HOH
337
A
n
1
1
A
ALA
2
n
2
ALA
2
A
ARG
3
n
3
ARG
3
A
ILE
4
n
4
ILE
4
A
ARG
5
n
5
ARG
5
A
HIS
6
n
6
HIS
6
A
VAL
7
n
7
VAL
7
A
GLN
8
n
8
GLN
8
A
GLY
9
n
9
GLY
9
A
ASP
10
n
10
ASP
10
A
ILE
11
n
11
ILE
11
A
THR
12
n
12
THR
12
A
GLU
13
n
13
GLU
13
A
PHE
14
n
14
PHE
14
A
GLN
15
n
15
GLN
15
A
GLY
16
n
16
GLY
16
A
ASP
17
n
17
ASP
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
VAL
20
n
20
VAL
20
A
ASN
21
n
21
ASN
21
A
ALA
22
n
22
ALA
22
A
ALA
23
n
23
ALA
23
A
ASN
24
n
24
ASN
24
A
ASN
25
n
25
ASN
25
A
TYR
26
n
26
TYR
26
A
LEU
27
n
27
LEU
27
A
LYS
28
n
28
LYS
28
A
LEU
29
n
29
LEU
29
A
GLY
30
n
30
GLY
30
A
ALA
31
n
31
ALA
31
A
GLY
32
n
32
GLY
32
A
VAL
33
n
33
VAL
33
A
ALA
34
n
34
ALA
34
A
GLY
35
n
35
GLY
35
A
ALA
36
n
36
ALA
36
A
ILE
37
n
37
ILE
37
A
LEU
38
n
38
LEU
38
A
ARG
39
n
39
ARG
39
A
LYS
40
n
40
LYS
40
A
GLY
41
n
41
GLY
41
A
GLY
42
n
42
GLY
42
A
PRO
43
n
43
PRO
43
A
SER
44
n
44
SER
44
A
ILE
45
n
45
ILE
45
A
GLN
46
n
46
GLN
46
A
GLU
47
n
47
GLU
47
A
GLU
48
n
48
GLU
48
A
CYS
49
n
49
CYS
49
A
ASP
50
n
50
ASP
50
A
ARG
51
n
51
ARG
51
A
ILE
52
n
52
ILE
52
A
GLY
53
n
53
GLY
53
A
LYS
54
n
54
LYS
54
A
ILE
55
n
55
ILE
55
A
ARG
56
n
56
ARG
56
A
VAL
57
n
57
VAL
57
A
GLY
58
n
58
GLY
58
A
GLU
59
n
59
GLU
59
A
ALA
60
n
60
ALA
60
A
ALA
61
n
61
ALA
61
A
VAL
62
n
62
VAL
62
A
THR
63
n
63
THR
63
A
GLY
64
n
64
GLY
64
A
ALA
65
n
65
ALA
65
A
GLY
66
n
66
GLY
66
A
ASN
67
n
67
ASN
67
A
LEU
68
n
68
LEU
68
A
PRO
69
n
69
PRO
69
A
VAL
70
n
70
VAL
70
A
ARG
71
n
71
ARG
71
A
TYR
72
n
72
TYR
72
A
VAL
73
n
73
VAL
73
A
ILE
74
n
74
ILE
74
A
HIS
75
n
75
HIS
75
A
ALA
76
n
76
ALA
76
A
ALA
77
n
77
ALA
77
A
VAL
78
n
78
VAL
78
A
LEU
79
n
79
LEU
79
A
GLY
80
n
80
GLY
80
A
ASP
81
n
81
ASP
81
A
GLU
82
n
82
GLU
82
A
PRO
83
n
83
PRO
83
A
ALA
84
n
84
ALA
84
A
SER
85
n
85
SER
85
A
LEU
86
n
86
LEU
86
A
GLU
87
n
87
GLU
87
A
THR
88
n
88
THR
88
A
VAL
89
n
89
VAL
89
A
ARG
90
n
90
ARG
90
A
LYS
91
n
91
LYS
91
A
ALA
92
n
92
ALA
92
A
THR
93
n
93
THR
93
A
LYS
94
n
94
LYS
94
A
SER
95
n
95
SER
95
A
ALA
96
n
96
ALA
96
A
LEU
97
n
97
LEU
97
A
GLU
98
n
98
GLU
98
A
LYS
99
n
99
LYS
99
A
ALA
100
n
100
ALA
100
A
VAL
101
n
101
VAL
101
A
GLU
102
n
102
GLU
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
LEU
105
n
105
LEU
105
A
LYS
106
n
106
LYS
106
A
THR
107
n
107
THR
107
A
VAL
108
n
108
VAL
108
A
ALA
109
n
109
ALA
109
A
PHE
110
n
110
PHE
110
A
THR
111
n
111
THR
111
A
ALA
112
n
112
ALA
112
A
LEU
113
n
113
LEU
113
A
GLY
114
n
114
GLY
114
A
ALA
115
n
115
ALA
115
A
TRP
116
n
116
TRP
116
A
VAL
117
n
117
VAL
117
A
GLY
118
n
118
GLY
118
A
GLY
119
n
119
GLY
119
A
LEU
120
n
120
LEU
120
A
PRO
121
n
121
PRO
121
A
ALA
122
n
122
ALA
122
A
GLU
123
n
123
GLU
123
A
ALA
124
n
124
ALA
124
A
VAL
125
n
125
VAL
125
A
LEU
126
n
126
LEU
126
A
ARG
127
n
127
ARG
127
A
VAL
128
n
128
VAL
128
A
MET
129
n
129
MET
129
A
LEU
130
n
130
LEU
130
A
GLU
131
n
131
GLU
131
A
GLU
132
n
132
GLU
132
A
ILE
133
n
133
ILE
133
A
LYS
134
n
134
LYS
134
A
LYS
135
n
135
LYS
135
A
ALA
136
n
136
ALA
136
A
PRO
137
n
137
PRO
137
A
ASP
138
n
138
ASP
138
A
THR
139
n
139
THR
139
A
LEU
140
n
140
LEU
140
A
GLU
141
n
141
GLU
141
A
VAL
142
n
142
VAL
142
A
THR
143
n
143
THR
143
A
GLY
144
n
144
GLY
144
A
VAL
145
n
145
VAL
145
A
HIS
146
n
146
HIS
146
A
GLY
147
n
147
GLY
147
A
THR
148
n
148
THR
148
A
GLU
149
n
149
GLU
149
A
LYS
150
n
150
LYS
150
A
SER
151
n
151
SER
151
A
ALA
152
n
152
ALA
152
A
GLU
153
n
153
GLU
153
A
ALA
154
n
154
ALA
154
A
ALA
155
n
155
ALA
155
A
ARG
156
n
156
ARG
156
A
ARG
157
n
157
ARG
157
A
ALA
158
n
158
ALA
158
A
LEU
159
n
159
LEU
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
HIS
162
n
162
HIS
162
A
HIS
163
n
163
HIS
163
A
HIS
164
n
164
HIS
164
A
HIS
165
n
165
HIS
165
A
n
166
166
A
n
167
167
A
2.4074
1.0594
0.0247
3.1653
0.4689
4.5167
-0.0585
0.0363
0.1890
-0.1093
0.0609
0.0638
-0.0745
0.3546
-0.0012
0.1942
0.0050
0.0100
0.2940
0.0623
0.2653
refined
5.6904
13.5459
14.1463
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
all
author_and_software_defined_assembly
PISA
2
dimeric
4310
-22
15060
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
44.6300000000
A
N
ARG
5
A
N
ARG
5
A
O
GLY
144
A
O
GLY
144
A
O
THR
143
A
O
THR
143
A
N
PHE
110
A
N
PHE
110
A
O
ALA
109
A
O
ALA
109
A
N
VAL
20
A
N
VAL
20
A
N
ASN
21
A
N
ASN
21
A
O
ILE
74
A
O
ILE
74
A
O
HIS
75
A
O
HIS
75
A
N
ALA
61
A
N
ALA
61
1
A
CL
201
B
CL
1
A
O1
PE4
202
C
O1
PE4
1
1
N
1
A
C1
PE4
202
C
C1
PE4
1
1
N
1
A
C2
PE4
202
C
C2
PE4
1
1
N
1
A
O2
PE4
202
C
O2
PE4
1
1
N
1
A
C3
PE4
202
C
C3
PE4
1
1
N
1
A
C4
PE4
202
C
C4
PE4
1
1
N
1
A
O3
PE4
202
C
O3
PE4
1
1
N
1
A
C5
PE4
202
C
C5
PE4
1
1
N
1
A
C6
PE4
202
C
C6
PE4
1
1
N
1
A
C15
PE4
202
C
C15
PE4
1
1
N
1
A
C16
PE4
202
C
C16
PE4
1
1
N
1
A
C48
PE5
203
D
C48
PE5
1
1
N
1
A
C50
PE5
203
D
C50
PE5
1
1
N
1
A
O1
PE5
203
D
O1
PE5
1
1
N
1
A
C1
PE5
203
D
C1
PE5
1
1
N
1
A
C2
PE5
203
D
C2
PE5
1
1
N
1
A
O2
PE5
203
D
O2
PE5
1
1
N
1
A
C3
PE5
203
D
C3
PE5
1
1
N
1
A
C4
PE5
203
D
C4
PE5
1
1
N
1
A
O3
PE5
203
D
O3
PE5
1
1
N
1
A
C5
PE5
203
D
C5
PE5
1
1
N
1
A
C6
PE5
203
D
C6
PE5
1
1
N
1
A
P1
PE6
204
E
P1
PE6
1
1
N
1
A
OP1
PE6
204
E
OP1
PE6
1
1
N
1
A
OP2
PE6
204
E
OP2
PE6
1
1
N
1
A
O20
PE6
204
E
O20
PE6
1
1
N
1
A
C19
PE6
204
E
C19
PE6
1
1
N
1
A
C18
PE6
204
E
C18
PE6
1
1
N
1
A
OP3
PE6
204
E
OP3
PE6
1
1
N
1
A
MET
1
A
MET
1
1
Y
1
A
HIS
166
A
HIS
166
1
Y
1
A
HIS
167
A
HIS
167
1
Y
1
A
A
O8
O8
PE4
PE4
202
202
2.00
1_555
7_555
1
A
ILE
55
-110.53
-162.58
1
A
TRP
116
-96.81
-75.21
1.4218
0.0000
-0.0000
1.4218
-0.0000
-2.8436
0.2257
0.1830
0.1849
2.203
36.958
502
10470
4.79
99.93
1.00
1.00
0.21
1
1.34
MIR
18.79
0.73
1.00
3V45
ML
FLAT BULK SOLVENT MODEL
49.029
0.375
2.203
36.958
37
1297
46
0
1214
0.008
1273
1.085
1704
17.508
485
0.070
196
0.005
217
0.2595
0.1952
2.4243
120
2426
100.00
0.2220
0.1943
2.7750
134
2437
100.00
0.2493
0.1753
3.4958
126
2472
100.00
0.2065
0.1813
36.9636
122
2633
100.00
36.45
2.2
50.0
4ETJ
19058
-3.0
0.090
1
57.6
14.9
100
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
dev_988
data extraction
PDB
help@deposit.rcsb.org
Jan. 22, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.100
Crystal Structure of E6H variant of de novo designed serine hydrolase OSH55, Northeast Structural Genomics Consortium (NESG) Target OR185
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
monomer,17.05 kD,95.7%, dimer,34.77 kD,4.68%
A
ASP
10
A
ASP
10
HELX_P
A
PHE
14
A
PHE
14
5
1
5
A
GLY
32
A
GLY
32
HELX_P
A
GLY
42
A
GLY
42
1
2
11
A
PRO
43
A
PRO
43
HELX_P
A
GLY
53
A
GLY
53
1
3
11
A
SER
85
A
SER
85
HELX_P
A
LEU
103
A
LEU
103
1
4
19
A
PRO
121
A
PRO
121
HELX_P
A
LYS
134
A
LYS
134
1
5
14
A
THR
148
A
THR
148
HELX_P
A
HIS
162
A
HIS
162
1
6
15
DE NOVO PROTEIN
Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, De novo protein
A
HIS
164
A
HIS
164
1
A
HIS
165
A
HIS
165
-0.83
4ETJ
PDB
1
4ETJ
1
167
4ETJ
1
167
4ETJ
A
1
1
167
6
parallel
parallel
parallel
parallel
anti-parallel
A
ARG
3
A
ARG
3
A
GLN
8
A
GLN
8
A
GLU
141
A
GLU
141
A
HIS
146
A
HIS
146
A
THR
107
A
THR
107
A
PHE
110
A
PHE
110
A
ALA
18
A
ALA
18
A
ASN
24
A
ASN
24
A
TYR
72
A
TYR
72
A
LEU
79
A
LEU
79
A
ALA
60
A
ALA
60
A
GLY
64
A
GLY
64
BINDING SITE FOR RESIDUE CL A 201
A
CL
201
Software
2
BINDING SITE FOR RESIDUE PE4 A 202
A
PE4
202
Software
8
BINDING SITE FOR RESIDUE PE5 A 203
A
PE5
203
Software
6
BINDING SITE FOR RESIDUE PE6 A 204
A
PE6
204
Software
7
A
ARG
90
A
ARG
90
2
1_555
A
ARG
90
A
ARG
90
2
8_555
A
ARG
5
A
ARG
5
8
1_555
A
ARG
5
A
ARG
5
8
7_555
A
VAL
7
A
VAL
7
8
1_555
A
GLY
9
A
GLY
9
8
1_555
A
ASP
10
A
ASP
10
8
1_555
A
GLU
13
A
GLU
13
8
1_555
A
PHE
14
A
PHE
14
8
7_555
A
THR
107
A
THR
107
8
7_555
A
GLY
119
A
GLY
119
6
8_555
A
LEU
120
A
LEU
120
6
8_555
A
LEU
126
A
LEU
126
6
1_555
A
ARG
127
A
ARG
127
6
1_555
A
LEU
130
A
LEU
130
6
1_555
A
ALA
158
A
ALA
158
6
1_555
A
HIS
6
A
HIS
6
7
1_555
A
THR
111
A
THR
111
7
1_555
A
ALA
112
A
ALA
112
7
1_555
A
LEU
126
A
LEU
126
7
1_555
A
GLY
144
A
GLY
144
7
1_555
A
VAL
145
A
VAL
145
7
1_555
A
HIS
146
A
HIS
146
7
1_555
96
P 43 21 2