0.004970
0.000000
0.000460
0.000000
0.023540
0.000000
0.000000
0.000000
0.014139
0.000000
0.000000
0.000000
Liu, J.
Walker, N.
Wang, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
95.290
90.000
201.202
42.480
71.031
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C26 H29 N5 O S2
491.671
6-{4-[2-(dimethylamino)ethoxy]phenyl}-N-(1,3-dithiolan-2-ylmethyl)-5-phenyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
22
6212
6217
10.1016/j.bmcl.2012.08.020
22929232
Synthesis and optimization of substituted furo[2,3-d]-pyrimidin-4-amines and 7H-pyrrolo[2,3-d]pyrimidin-4-amines as ACK1 inhibitors.
2012
1
CCD
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.0
5.0.2
ALS
SYNCHROTRON
ALS BEAMLINE 5.0.2
31503.285
Activated CDC42 kinase 1
2.7.10.2, 2.7.11.1
2
man
polymer
491.671
6-{4-[2-(dimethylamino)ethoxy]phenyl}-N-(1,3-dithiolan-2-ylmethyl)-5-phenyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine
2
syn
non-polymer
18.015
water
23
nat
water
ACK-1, Tyrosine kinase non-receptor protein 2
no
yes
LTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVV
LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRA
LPQNDDH(PTR)VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPR
PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT
LTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVV
LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRA
LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDC
PQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT
B,A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
TNK2, ACK1
9606
Homo sapiens
1
2.40
48.72
VAPOR DIFFUSION
vapor diffusion, temperature 298K
298
repository
Initial release
Database references
1
0
2012-09-19
1
1
2012-10-31
RCSB
Y
RCSB
2012-04-27
REL
REL
T77
6-{4-[2-(dimethylamino)ethoxy]phenyl}-N-(1,3-dithiolan-2-ylmethyl)-5-phenyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine
HOH
water
T77
1
2
T77
T77
401
B
T77
1
2
T77
T77
401
A
HOH
2
3
HOH
HOH
501
B
HOH
3
3
HOH
HOH
502
B
HOH
4
3
HOH
HOH
503
B
HOH
7
3
HOH
HOH
504
B
HOH
8
3
HOH
HOH
505
B
HOH
9
3
HOH
HOH
506
B
HOH
10
3
HOH
HOH
507
B
HOH
11
3
HOH
HOH
508
B
HOH
12
3
HOH
HOH
509
B
HOH
13
3
HOH
HOH
510
B
HOH
14
3
HOH
HOH
511
B
HOH
18
3
HOH
HOH
512
B
HOH
19
3
HOH
HOH
513
B
HOH
21
3
HOH
HOH
514
B
HOH
22
3
HOH
HOH
515
B
HOH
23
3
HOH
HOH
516
B
HOH
1
3
HOH
HOH
501
A
HOH
5
3
HOH
HOH
502
A
HOH
6
3
HOH
HOH
503
A
HOH
15
3
HOH
HOH
504
A
HOH
16
3
HOH
HOH
505
A
HOH
17
3
HOH
HOH
506
A
HOH
20
3
HOH
HOH
507
A
LEU
117
n
1
LEU
117
B
THR
118
n
2
THR
118
B
CYS
119
n
3
CYS
119
B
LEU
120
n
4
LEU
120
B
ILE
121
n
5
ILE
121
B
GLY
122
n
6
GLY
122
B
GLU
123
n
7
GLU
123
B
LYS
124
n
8
LYS
124
B
ASP
125
n
9
ASP
125
B
LEU
126
n
10
LEU
126
B
ARG
127
n
11
ARG
127
B
LEU
128
n
12
LEU
128
B
LEU
129
n
13
LEU
129
B
GLU
130
n
14
GLU
130
B
LYS
131
n
15
LYS
131
B
LEU
132
n
16
LEU
132
B
GLY
133
n
17
GLY
133
B
ASP
134
n
18
ASP
134
B
GLY
135
n
19
GLY
135
B
SER
136
n
20
SER
136
B
PHE
137
n
21
PHE
137
B
GLY
138
n
22
GLY
138
B
VAL
139
n
23
VAL
139
B
VAL
140
n
24
VAL
140
B
ARG
141
n
25
ARG
141
B
ARG
142
n
26
ARG
142
B
GLY
143
n
27
GLY
143
B
GLU
144
n
28
GLU
144
B
TRP
145
n
29
TRP
145
B
ASP
146
n
30
ASP
146
B
ALA
147
n
31
ALA
147
B
PRO
148
n
32
PRO
148
B
SER
149
n
33
SER
149
B
GLY
150
n
34
GLY
150
B
LYS
151
n
35
LYS
151
B
THR
152
n
36
THR
152
B
VAL
153
n
37
VAL
153
B
SER
154
n
38
SER
154
B
VAL
155
n
39
VAL
155
B
ALA
156
n
40
ALA
156
B
VAL
157
n
41
VAL
157
B
LYS
158
n
42
LYS
158
B
CYS
159
n
43
CYS
159
B
LEU
160
n
44
LEU
160
B
LYS
161
n
45
LYS
161
B
PRO
162
n
46
PRO
162
B
ASP
163
n
47
ASP
163
B
VAL
164
n
48
VAL
164
B
LEU
165
n
49
LEU
165
B
SER
166
n
50
SER
166
B
GLN
167
n
51
GLN
167
B
PRO
168
n
52
PRO
168
B
GLU
169
n
53
GLU
169
B
ALA
170
n
54
ALA
170
B
MET
171
n
55
MET
171
B
ASP
172
n
56
ASP
172
B
ASP
173
n
57
ASP
173
B
PHE
174
n
58
PHE
174
B
ILE
175
n
59
ILE
175
B
ARG
176
n
60
ARG
176
B
GLU
177
n
61
GLU
177
B
VAL
178
n
62
VAL
178
B
ASN
179
n
63
ASN
179
B
ALA
180
n
64
ALA
180
B
MET
181
n
65
MET
181
B
HIS
182
n
66
HIS
182
B
SER
183
n
67
SER
183
B
LEU
184
n
68
LEU
184
B
ASP
185
n
69
ASP
185
B
HIS
186
n
70
HIS
186
B
ARG
187
n
71
ARG
187
B
ASN
188
n
72
ASN
188
B
LEU
189
n
73
LEU
189
B
ILE
190
n
74
ILE
190
B
ARG
191
n
75
ARG
191
B
LEU
192
n
76
LEU
192
B
TYR
193
n
77
TYR
193
B
GLY
194
n
78
GLY
194
B
VAL
195
n
79
VAL
195
B
VAL
196
n
80
VAL
196
B
LEU
197
n
81
LEU
197
B
THR
198
n
82
THR
198
B
PRO
199
n
83
PRO
199
B
PRO
200
n
84
PRO
200
B
MET
201
n
85
MET
201
B
LYS
202
n
86
LYS
202
B
MET
203
n
87
MET
203
B
VAL
204
n
88
VAL
204
B
THR
205
n
89
THR
205
B
GLU
206
n
90
GLU
206
B
LEU
207
n
91
LEU
207
B
ALA
208
n
92
ALA
208
B
PRO
209
n
93
PRO
209
B
LEU
210
n
94
LEU
210
B
GLY
211
n
95
GLY
211
B
SER
212
n
96
SER
212
B
LEU
213
n
97
LEU
213
B
LEU
214
n
98
LEU
214
B
ASP
215
n
99
ASP
215
B
ARG
216
n
100
ARG
216
B
LEU
217
n
101
LEU
217
B
ARG
218
n
102
ARG
218
B
LYS
219
n
103
LYS
219
B
HIS
220
n
104
HIS
220
B
GLN
221
n
105
GLN
221
B
GLY
222
n
106
GLY
222
B
HIS
223
n
107
HIS
223
B
PHE
224
n
108
PHE
224
B
LEU
225
n
109
LEU
225
B
LEU
226
n
110
LEU
226
B
GLY
227
n
111
GLY
227
B
THR
228
n
112
THR
228
B
LEU
229
n
113
LEU
229
B
SER
230
n
114
SER
230
B
ARG
231
n
115
ARG
231
B
TYR
232
n
116
TYR
232
B
ALA
233
n
117
ALA
233
B
VAL
234
n
118
VAL
234
B
GLN
235
n
119
GLN
235
B
VAL
236
n
120
VAL
236
B
ALA
237
n
121
ALA
237
B
GLU
238
n
122
GLU
238
B
GLY
239
n
123
GLY
239
B
MET
240
n
124
MET
240
B
GLY
241
n
125
GLY
241
B
TYR
242
n
126
TYR
242
B
LEU
243
n
127
LEU
243
B
GLU
244
n
128
GLU
244
B
SER
245
n
129
SER
245
B
LYS
246
n
130
LYS
246
B
ARG
247
n
131
ARG
247
B
PHE
248
n
132
PHE
248
B
ILE
249
n
133
ILE
249
B
HIS
250
n
134
HIS
250
B
ARG
251
n
135
ARG
251
B
ASP
252
n
136
ASP
252
B
LEU
253
n
137
LEU
253
B
ALA
254
n
138
ALA
254
B
ALA
255
n
139
ALA
255
B
ARG
256
n
140
ARG
256
B
ASN
257
n
141
ASN
257
B
LEU
258
n
142
LEU
258
B
LEU
259
n
143
LEU
259
B
LEU
260
n
144
LEU
260
B
ALA
261
n
145
ALA
261
B
THR
262
n
146
THR
262
B
ARG
263
n
147
ARG
263
B
ASP
264
n
148
ASP
264
B
LEU
265
n
149
LEU
265
B
VAL
266
n
150
VAL
266
B
LYS
267
n
151
LYS
267
B
ILE
268
n
152
ILE
268
B
GLY
269
n
153
GLY
269
B
ASP
270
n
154
ASP
270
B
PHE
271
n
155
PHE
271
B
GLY
272
n
156
GLY
272
B
LEU
273
n
157
LEU
273
B
MET
274
n
158
MET
274
B
ARG
275
n
159
ARG
275
B
ALA
276
n
160
ALA
276
B
LEU
277
n
161
LEU
277
B
PRO
278
n
162
PRO
278
B
GLN
279
n
163
GLN
279
B
ASN
280
n
164
ASN
280
B
ASP
281
n
165
ASP
281
B
ASP
282
n
166
ASP
282
B
HIS
283
n
167
HIS
283
B
PTR
284
n
168
PTR
284
B
VAL
285
n
169
VAL
285
B
MET
286
n
170
MET
286
B
GLN
287
n
171
GLN
287
B
GLU
288
n
172
GLU
288
B
HIS
289
n
173
HIS
289
B
ARG
290
n
174
ARG
290
B
LYS
291
n
175
LYS
291
B
VAL
292
n
176
VAL
292
B
PRO
293
n
177
PRO
293
B
PHE
294
n
178
PHE
294
B
ALA
295
n
179
ALA
295
B
TRP
296
n
180
TRP
296
B
CYS
297
n
181
CYS
297
B
ALA
298
n
182
ALA
298
B
PRO
299
n
183
PRO
299
B
GLU
300
n
184
GLU
300
B
SER
301
n
185
SER
301
B
LEU
302
n
186
LEU
302
B
LYS
303
n
187
LYS
303
B
THR
304
n
188
THR
304
B
ARG
305
n
189
ARG
305
B
THR
306
n
190
THR
306
B
PHE
307
n
191
PHE
307
B
SER
308
n
192
SER
308
B
HIS
309
n
193
HIS
309
B
ALA
310
n
194
ALA
310
B
SER
311
n
195
SER
311
B
ASP
312
n
196
ASP
312
B
THR
313
n
197
THR
313
B
TRP
314
n
198
TRP
314
B
MET
315
n
199
MET
315
B
PHE
316
n
200
PHE
316
B
GLY
317
n
201
GLY
317
B
VAL
318
n
202
VAL
318
B
THR
319
n
203
THR
319
B
LEU
320
n
204
LEU
320
B
TRP
321
n
205
TRP
321
B
GLU
322
n
206
GLU
322
B
MET
323
n
207
MET
323
B
PHE
324
n
208
PHE
324
B
THR
325
n
209
THR
325
B
TYR
326
n
210
TYR
326
B
GLY
327
n
211
GLY
327
B
GLN
328
n
212
GLN
328
B
GLU
329
n
213
GLU
329
B
PRO
330
n
214
PRO
330
B
TRP
331
n
215
TRP
331
B
ILE
332
n
216
ILE
332
B
GLY
333
n
217
GLY
333
B
LEU
334
n
218
LEU
334
B
ASN
335
n
219
ASN
335
B
GLY
336
n
220
GLY
336
B
SER
337
n
221
SER
337
B
GLN
338
n
222
GLN
338
B
ILE
339
n
223
ILE
339
B
LEU
340
n
224
LEU
340
B
HIS
341
n
225
HIS
341
B
LYS
342
n
226
LYS
342
B
ILE
343
n
227
ILE
343
B
ASP
344
n
228
ASP
344
B
LYS
345
n
229
LYS
345
B
GLU
346
n
230
GLU
346
B
GLY
347
n
231
GLY
347
B
GLU
348
n
232
GLU
348
B
ARG
349
n
233
ARG
349
B
LEU
350
n
234
LEU
350
B
PRO
351
n
235
PRO
351
B
ARG
352
n
236
ARG
352
B
PRO
353
n
237
PRO
353
B
GLU
354
n
238
GLU
354
B
ASP
355
n
239
ASP
355
B
CYS
356
n
240
CYS
356
B
PRO
357
n
241
PRO
357
B
GLN
358
n
242
GLN
358
B
ASP
359
n
243
ASP
359
B
ILE
360
n
244
ILE
360
B
TYR
361
n
245
TYR
361
B
ASN
362
n
246
ASN
362
B
VAL
363
n
247
VAL
363
B
MET
364
n
248
MET
364
B
VAL
365
n
249
VAL
365
B
GLN
366
n
250
GLN
366
B
CYS
367
n
251
CYS
367
B
TRP
368
n
252
TRP
368
B
ALA
369
n
253
ALA
369
B
HIS
370
n
254
HIS
370
B
LYS
371
n
255
LYS
371
B
PRO
372
n
256
PRO
372
B
GLU
373
n
257
GLU
373
B
ASP
374
n
258
ASP
374
B
ARG
375
n
259
ARG
375
B
PRO
376
n
260
PRO
376
B
THR
377
n
261
THR
377
B
PHE
378
n
262
PHE
378
B
VAL
379
n
263
VAL
379
B
ALA
380
n
264
ALA
380
B
LEU
381
n
265
LEU
381
B
ARG
382
n
266
ARG
382
B
ASP
383
n
267
ASP
383
B
PHE
384
n
268
PHE
384
B
LEU
385
n
269
LEU
385
B
LEU
386
n
270
LEU
386
B
GLU
387
n
271
GLU
387
B
ALA
388
n
272
ALA
388
B
GLN
389
n
273
GLN
389
B
PRO
390
n
274
PRO
390
B
n
275
391
B
LEU
117
n
1
LEU
117
A
THR
118
n
2
THR
118
A
CYS
119
n
3
CYS
119
A
LEU
120
n
4
LEU
120
A
ILE
121
n
5
ILE
121
A
GLY
122
n
6
GLY
122
A
GLU
123
n
7
GLU
123
A
LYS
124
n
8
LYS
124
A
ASP
125
n
9
ASP
125
A
LEU
126
n
10
LEU
126
A
ARG
127
n
11
ARG
127
A
LEU
128
n
12
LEU
128
A
LEU
129
n
13
LEU
129
A
GLU
130
n
14
GLU
130
A
LYS
131
n
15
LYS
131
A
LEU
132
n
16
LEU
132
A
GLY
133
n
17
GLY
133
A
ASP
134
n
18
ASP
134
A
GLY
135
n
19
GLY
135
A
SER
136
n
20
SER
136
A
PHE
137
n
21
PHE
137
A
GLY
138
n
22
GLY
138
A
VAL
139
n
23
VAL
139
A
VAL
140
n
24
VAL
140
A
ARG
141
n
25
ARG
141
A
ARG
142
n
26
ARG
142
A
GLY
143
n
27
GLY
143
A
GLU
144
n
28
GLU
144
A
TRP
145
n
29
TRP
145
A
ASP
146
n
30
ASP
146
A
ALA
147
n
31
ALA
147
A
PRO
148
n
32
PRO
148
A
SER
149
n
33
SER
149
A
GLY
150
n
34
GLY
150
A
LYS
151
n
35
LYS
151
A
THR
152
n
36
THR
152
A
VAL
153
n
37
VAL
153
A
SER
154
n
38
SER
154
A
VAL
155
n
39
VAL
155
A
ALA
156
n
40
ALA
156
A
VAL
157
n
41
VAL
157
A
LYS
158
n
42
LYS
158
A
CYS
159
n
43
CYS
159
A
LEU
160
n
44
LEU
160
A
LYS
161
n
45
LYS
161
A
PRO
162
n
46
PRO
162
A
ASP
163
n
47
ASP
163
A
VAL
164
n
48
VAL
164
A
LEU
165
n
49
LEU
165
A
SER
166
n
50
SER
166
A
GLN
167
n
51
GLN
167
A
PRO
168
n
52
PRO
168
A
GLU
169
n
53
GLU
169
A
ALA
170
n
54
ALA
170
A
MET
171
n
55
MET
171
A
ASP
172
n
56
ASP
172
A
ASP
173
n
57
ASP
173
A
PHE
174
n
58
PHE
174
A
ILE
175
n
59
ILE
175
A
ARG
176
n
60
ARG
176
A
GLU
177
n
61
GLU
177
A
VAL
178
n
62
VAL
178
A
ASN
179
n
63
ASN
179
A
ALA
180
n
64
ALA
180
A
MET
181
n
65
MET
181
A
HIS
182
n
66
HIS
182
A
SER
183
n
67
SER
183
A
LEU
184
n
68
LEU
184
A
ASP
185
n
69
ASP
185
A
HIS
186
n
70
HIS
186
A
ARG
187
n
71
ARG
187
A
ASN
188
n
72
ASN
188
A
LEU
189
n
73
LEU
189
A
ILE
190
n
74
ILE
190
A
ARG
191
n
75
ARG
191
A
LEU
192
n
76
LEU
192
A
TYR
193
n
77
TYR
193
A
GLY
194
n
78
GLY
194
A
VAL
195
n
79
VAL
195
A
VAL
196
n
80
VAL
196
A
LEU
197
n
81
LEU
197
A
THR
198
n
82
THR
198
A
PRO
199
n
83
PRO
199
A
PRO
200
n
84
PRO
200
A
MET
201
n
85
MET
201
A
LYS
202
n
86
LYS
202
A
MET
203
n
87
MET
203
A
VAL
204
n
88
VAL
204
A
THR
205
n
89
THR
205
A
GLU
206
n
90
GLU
206
A
LEU
207
n
91
LEU
207
A
ALA
208
n
92
ALA
208
A
PRO
209
n
93
PRO
209
A
LEU
210
n
94
LEU
210
A
GLY
211
n
95
GLY
211
A
SER
212
n
96
SER
212
A
LEU
213
n
97
LEU
213
A
LEU
214
n
98
LEU
214
A
ASP
215
n
99
ASP
215
A
ARG
216
n
100
ARG
216
A
LEU
217
n
101
LEU
217
A
ARG
218
n
102
ARG
218
A
LYS
219
n
103
LYS
219
A
HIS
220
n
104
HIS
220
A
GLN
221
n
105
GLN
221
A
GLY
222
n
106
GLY
222
A
HIS
223
n
107
HIS
223
A
PHE
224
n
108
PHE
224
A
LEU
225
n
109
LEU
225
A
LEU
226
n
110
LEU
226
A
GLY
227
n
111
GLY
227
A
THR
228
n
112
THR
228
A
LEU
229
n
113
LEU
229
A
SER
230
n
114
SER
230
A
ARG
231
n
115
ARG
231
A
TYR
232
n
116
TYR
232
A
ALA
233
n
117
ALA
233
A
VAL
234
n
118
VAL
234
A
GLN
235
n
119
GLN
235
A
VAL
236
n
120
VAL
236
A
ALA
237
n
121
ALA
237
A
GLU
238
n
122
GLU
238
A
GLY
239
n
123
GLY
239
A
MET
240
n
124
MET
240
A
GLY
241
n
125
GLY
241
A
TYR
242
n
126
TYR
242
A
LEU
243
n
127
LEU
243
A
GLU
244
n
128
GLU
244
A
SER
245
n
129
SER
245
A
LYS
246
n
130
LYS
246
A
ARG
247
n
131
ARG
247
A
PHE
248
n
132
PHE
248
A
ILE
249
n
133
ILE
249
A
HIS
250
n
134
HIS
250
A
ARG
251
n
135
ARG
251
A
ASP
252
n
136
ASP
252
A
LEU
253
n
137
LEU
253
A
ALA
254
n
138
ALA
254
A
ALA
255
n
139
ALA
255
A
ARG
256
n
140
ARG
256
A
ASN
257
n
141
ASN
257
A
LEU
258
n
142
LEU
258
A
LEU
259
n
143
LEU
259
A
LEU
260
n
144
LEU
260
A
ALA
261
n
145
ALA
261
A
THR
262
n
146
THR
262
A
ARG
263
n
147
ARG
263
A
ASP
264
n
148
ASP
264
A
LEU
265
n
149
LEU
265
A
VAL
266
n
150
VAL
266
A
LYS
267
n
151
LYS
267
A
ILE
268
n
152
ILE
268
A
GLY
269
n
153
GLY
269
A
ASP
270
n
154
ASP
270
A
PHE
271
n
155
PHE
271
A
GLY
272
n
156
GLY
272
A
LEU
273
n
157
LEU
273
A
MET
274
n
158
MET
274
A
ARG
275
n
159
ARG
275
A
ALA
276
n
160
ALA
276
A
LEU
277
n
161
LEU
277
A
PRO
278
n
162
PRO
278
A
GLN
279
n
163
GLN
279
A
ASN
280
n
164
ASN
280
A
ASP
281
n
165
ASP
281
A
ASP
282
n
166
ASP
282
A
HIS
283
n
167
HIS
283
A
PTR
284
n
168
PTR
284
A
VAL
285
n
169
VAL
285
A
MET
286
n
170
MET
286
A
GLN
287
n
171
GLN
287
A
GLU
288
n
172
GLU
288
A
HIS
289
n
173
HIS
289
A
ARG
290
n
174
ARG
290
A
LYS
291
n
175
LYS
291
A
VAL
292
n
176
VAL
292
A
PRO
293
n
177
PRO
293
A
PHE
294
n
178
PHE
294
A
ALA
295
n
179
ALA
295
A
TRP
296
n
180
TRP
296
A
CYS
297
n
181
CYS
297
A
ALA
298
n
182
ALA
298
A
PRO
299
n
183
PRO
299
A
GLU
300
n
184
GLU
300
A
SER
301
n
185
SER
301
A
LEU
302
n
186
LEU
302
A
LYS
303
n
187
LYS
303
A
THR
304
n
188
THR
304
A
ARG
305
n
189
ARG
305
A
THR
306
n
190
THR
306
A
PHE
307
n
191
PHE
307
A
SER
308
n
192
SER
308
A
HIS
309
n
193
HIS
309
A
ALA
310
n
194
ALA
310
A
SER
311
n
195
SER
311
A
ASP
312
n
196
ASP
312
A
THR
313
n
197
THR
313
A
TRP
314
n
198
TRP
314
A
MET
315
n
199
MET
315
A
PHE
316
n
200
PHE
316
A
GLY
317
n
201
GLY
317
A
VAL
318
n
202
VAL
318
A
THR
319
n
203
THR
319
A
LEU
320
n
204
LEU
320
A
TRP
321
n
205
TRP
321
A
GLU
322
n
206
GLU
322
A
MET
323
n
207
MET
323
A
PHE
324
n
208
PHE
324
A
THR
325
n
209
THR
325
A
TYR
326
n
210
TYR
326
A
GLY
327
n
211
GLY
327
A
GLN
328
n
212
GLN
328
A
GLU
329
n
213
GLU
329
A
PRO
330
n
214
PRO
330
A
TRP
331
n
215
TRP
331
A
ILE
332
n
216
ILE
332
A
GLY
333
n
217
GLY
333
A
LEU
334
n
218
LEU
334
A
ASN
335
n
219
ASN
335
A
GLY
336
n
220
GLY
336
A
SER
337
n
221
SER
337
A
GLN
338
n
222
GLN
338
A
ILE
339
n
223
ILE
339
A
LEU
340
n
224
LEU
340
A
HIS
341
n
225
HIS
341
A
LYS
342
n
226
LYS
342
A
ILE
343
n
227
ILE
343
A
ASP
344
n
228
ASP
344
A
LYS
345
n
229
LYS
345
A
GLU
346
n
230
GLU
346
A
GLY
347
n
231
GLY
347
A
GLU
348
n
232
GLU
348
A
ARG
349
n
233
ARG
349
A
LEU
350
n
234
LEU
350
A
PRO
351
n
235
PRO
351
A
ARG
352
n
236
ARG
352
A
PRO
353
n
237
PRO
353
A
GLU
354
n
238
GLU
354
A
ASP
355
n
239
ASP
355
A
CYS
356
n
240
CYS
356
A
PRO
357
n
241
PRO
357
A
GLN
358
n
242
GLN
358
A
ASP
359
n
243
ASP
359
A
ILE
360
n
244
ILE
360
A
TYR
361
n
245
TYR
361
A
ASN
362
n
246
ASN
362
A
VAL
363
n
247
VAL
363
A
MET
364
n
248
MET
364
A
VAL
365
n
249
VAL
365
A
GLN
366
n
250
GLN
366
A
CYS
367
n
251
CYS
367
A
TRP
368
n
252
TRP
368
A
ALA
369
n
253
ALA
369
A
HIS
370
n
254
HIS
370
A
LYS
371
n
255
LYS
371
A
PRO
372
n
256
PRO
372
A
GLU
373
n
257
GLU
373
A
ASP
374
n
258
ASP
374
A
ARG
375
n
259
ARG
375
A
PRO
376
n
260
PRO
376
A
THR
377
n
261
THR
377
A
PHE
378
n
262
PHE
378
A
VAL
379
n
263
VAL
379
A
ALA
380
n
264
ALA
380
A
LEU
381
n
265
LEU
381
A
ARG
382
n
266
ARG
382
A
ASP
383
n
267
ASP
383
A
PHE
384
n
268
PHE
384
A
LEU
385
n
269
LEU
385
A
LEU
386
n
270
LEU
386
A
GLU
387
n
271
GLU
387
A
ALA
388
n
272
ALA
388
A
GLN
389
n
273
GLN
389
A
PRO
390
n
274
PRO
390
A
THR
391
n
275
THR
391
A
author_and_software_defined_assembly
PISA
2
dimeric
1600
-11
24630
B
PTR
284
O-PHOSPHOTYROSINE
A
PTR
168
TYR
A
PTR
284
O-PHOSPHOTYROSINE
B
PTR
168
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
-x+1/2,y+1/2,-z
crystal symmetry operation
100.6010000000
21.2400000000
0.0000000000
B
N
CYS
119
A
N
CYS
3
B
O
TYR
193
A
O
TYR
77
B
N
GLY
194
A
N
GLY
78
B
O
VAL
204
A
O
VAL
88
B
O
THR
205
A
O
THR
89
B
N
ALA
156
A
N
ALA
40
B
O
VAL
153
A
O
VAL
37
B
N
TRP
145
A
N
TRP
29
B
O
VAL
140
A
O
VAL
24
B
N
LEU
132
A
N
LEU
16
B
N
GLY
211
A
N
GLY
95
B
O
LEU
260
A
O
LEU
144
B
N
LEU
259
A
N
LEU
143
B
O
LYS
267
A
O
LYS
151
B
N
ILE
249
A
N
ILE
133
B
O
ARG
275
A
O
ARG
159
B
N
PTR
284
A
N
PTR
168
B
O
PHE
307
A
O
PHE
191
A
N
CYS
119
B
N
CYS
3
A
O
TYR
193
B
O
TYR
77
A
N
GLY
194
B
N
GLY
78
A
O
VAL
204
B
O
VAL
88
A
O
THR
205
B
O
THR
89
A
N
ALA
156
B
N
ALA
40
A
O
VAL
157
B
O
VAL
41
A
N
ARG
141
B
N
ARG
25
A
O
VAL
140
B
O
VAL
24
A
N
LEU
132
B
N
LEU
16
A
N
GLY
211
B
N
GLY
95
A
O
LEU
260
B
O
LEU
144
A
N
LEU
259
B
N
LEU
143
A
O
LYS
267
B
O
LYS
151
A
N
ILE
249
B
N
ILE
133
A
O
ARG
275
B
O
ARG
159
A
N
PTR
284
B
N
PTR
168
A
O
PHE
307
B
O
PHE
191
1
B
THR
391
A
THR
275
1
Y
1
B
B
ASP
VAL
163
164
-149.55
1
B
B
GLN
PRO
389
390
103.97
1
A
A
GLN
PRO
389
390
68.06
1
5.75
0.90
118.30
124.05
B
B
B
CB
CG
OD2
ASP
ASP
ASP
125
125
125
N
1
6.33
0.90
118.30
124.63
B
B
B
CB
CG
OD2
ASP
ASP
ASP
134
134
134
N
1
5.55
0.90
118.30
123.85
B
B
B
CB
CG
OD2
ASP
ASP
ASP
146
146
146
N
1
5.75
0.90
118.30
124.05
B
B
B
CB
CG
OD2
ASP
ASP
ASP
281
281
281
N
1
5.62
0.90
118.30
123.92
B
B
B
CB
CG
OD2
ASP
ASP
ASP
282
282
282
N
1
5.80
0.90
118.30
124.10
B
B
B
CB
CG
OD2
ASP
ASP
ASP
344
344
344
N
1
5.62
0.90
118.30
123.92
B
B
B
CB
CG
OD2
ASP
ASP
ASP
355
355
355
N
1
5.94
0.90
118.30
124.24
B
B
B
CB
CG
OD2
ASP
ASP
ASP
383
383
383
N
1
14.33
2.30
115.30
129.63
A
A
A
CA
CB
CG
LEU
LEU
LEU
273
273
273
N
1
5.44
0.90
118.30
123.74
A
A
A
CB
CG
OD2
ASP
ASP
ASP
281
281
281
N
1
3.08
0.50
120.30
123.38
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
349
349
349
N
1
-3.05
0.50
120.30
117.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
349
349
349
N
1
6.19
0.90
118.30
124.49
A
A
A
CB
CG
OD2
ASP
ASP
ASP
383
383
383
N
1
B
A
O
OG
ILE
SER
332
337
2.05
1_555
4_555
1
B
LEU
129
-104.26
-131.78
1
B
ASP
163
-111.97
-137.25
1
B
VAL
164
52.35
10.49
1
B
LEU
165
-154.34
-79.98
1
B
SER
183
97.24
-18.05
1
B
GLN
221
-71.32
-84.51
1
B
HIS
223
-3.88
-47.22
1
B
ARG
251
72.85
-2.08
1
B
ASP
252
-150.16
39.40
1
B
PHE
271
-142.78
20.76
1
B
ARG
305
47.86
29.44
1
B
TRP
331
39.54
45.40
1
B
ASP
355
87.36
6.88
1
B
GLU
387
-54.91
-9.90
1
A
LEU
129
-114.20
-139.13
1
A
ASP
163
-111.02
-137.19
1
A
VAL
164
52.71
9.19
1
A
LEU
165
-152.96
-78.77
1
A
SER
183
97.92
-18.94
1
A
LEU
217
-35.54
-34.04
1
A
GLN
221
-65.33
-86.83
1
A
HIS
223
6.10
-55.53
1
A
ARG
247
80.70
11.77
1
A
ARG
251
69.82
-0.05
1
A
ASP
252
-146.72
43.11
1
A
PHE
271
-163.96
19.15
1
A
ASP
281
174.96
169.36
1
A
ASP
355
87.65
7.01
1
A
PRO
390
-95.87
-88.22
93.850
51.1283
22.140
-1.7600
0.0000
1.2900
3.5200
0.0000
-1.5200
0.9080
0.8570
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.3132
0.2557
0.2588
2.5000
100.0000
1082
21084
5.1000
99.7100
1.000
1.000
12.7880
0.2940
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.9800
0.3780
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.5000
100.0000
23
4502
68
0
4411
0.021
0.021
4596
2.137
1.980
6227
9.261
5.000
547
0.125
0.200
666
0.008
0.020
3488
0.248
0.200
1947
0.187
0.200
157
0.367
0.200
64
0.342
0.200
3
1.013
1.500
2738
1.876
2.000
4416
2.504
3.000
1858
4.169
4.500
1811
1
B
1
2202
X-RAY DIFFRACTION
TIGHT POSITIONAL
0.100
0.050
1
B
1
2202
X-RAY DIFFRACTION
TIGHT THERMAL
0.270
0.500
1
A
2
34
X-RAY DIFFRACTION
TIGHT POSITIONAL
0.070
0.050
1
A
2
34
X-RAY DIFFRACTION
TIGHT THERMAL
0.310
0.500
0.3390
0.2880
2.5650
78
1458
1536
20
2.500
100.173
4EWH
21086
0.058
0.058
1
16.400
3.600
99.800
0.437
2.500
2.640
1.700
11084
3048
0.437
1
3.600
99.900
0.279
2.640
2.800
2.700
10532
2877
0.279
1
3.700
99.900
0.190
2.800
2.990
3.800
9963
2731
0.190
1
3.600
99.900
0.118
2.990
3.230
6.100
9286
2534
0.118
1
3.700
100.000
0.070
3.230
3.540
10.100
8514
2333
0.070
1
3.600
99.900
0.045
3.540
3.950
14.500
7777
2133
0.045
1
3.600
99.900
0.033
3.950
4.560
18.500
6737
1865
0.033
1
3.600
99.800
0.032
4.560
5.590
18.500
5727
1601
0.032
1
3.600
99.800
0.030
5.590
7.910
17.800
4403
1258
0.030
1
3.500
99.700
0.027
7.910
60.464
20.600
2303
706
0.027
1
3.300
98.300
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
6/11/2002
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.1.20
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.1.24
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
Activated CDC42 kinase 1 (E.C.2.7.10.2, 2.7.11.1)
Co-crystal structure of ACK1 with inhibitor
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
B
GLY
122
A
GLY
6
HELX_P
B
LYS
124
A
LYS
8
5
1
3
B
GLN
167
A
GLN
51
HELX_P
B
HIS
182
A
HIS
66
1
2
16
B
LEU
213
A
LEU
97
HELX_P
B
HIS
220
A
HIS
104
1
3
8
B
LEU
225
A
LEU
109
HELX_P
B
LYS
246
A
LYS
130
1
4
22
B
ALA
254
A
ALA
138
HELX_P
B
ARG
256
A
ARG
140
5
5
3
B
PRO
293
A
PRO
177
HELX_P
B
CYS
297
A
CYS
181
5
6
5
B
ALA
298
A
ALA
182
HELX_P
B
ARG
305
A
ARG
189
1
7
8
B
SER
308
A
SER
192
HELX_P
B
PHE
324
A
PHE
208
1
8
17
B
ASN
335
A
ASN
219
HELX_P
B
LYS
345
A
LYS
229
1
9
11
B
PRO
357
A
PRO
241
HELX_P
B
TRP
368
A
TRP
252
1
10
12
B
LYS
371
A
LYS
255
HELX_P
B
ARG
375
A
ARG
259
5
11
5
B
THR
377
A
THR
261
HELX_P
B
GLU
387
A
GLU
271
1
12
11
A
GLY
122
B
GLY
6
HELX_P
A
LYS
124
B
LYS
8
5
13
3
A
GLN
167
B
GLN
51
HELX_P
A
HIS
182
B
HIS
66
1
14
16
A
LEU
213
B
LEU
97
HELX_P
A
HIS
220
B
HIS
104
1
15
8
A
LEU
225
B
LEU
109
HELX_P
A
LYS
246
B
LYS
130
1
16
22
A
ALA
254
B
ALA
138
HELX_P
A
ARG
256
B
ARG
140
5
17
3
A
PRO
293
B
PRO
177
HELX_P
A
CYS
297
B
CYS
181
5
18
5
A
ALA
298
B
ALA
182
HELX_P
A
ARG
305
B
ARG
189
1
19
8
A
SER
308
B
SER
192
HELX_P
A
THR
325
B
THR
209
1
20
18
A
ASN
335
B
ASN
219
HELX_P
A
LYS
345
B
LYS
229
1
21
11
A
PRO
357
B
PRO
241
HELX_P
A
TRP
368
B
TRP
252
1
22
12
A
LYS
371
B
LYS
255
HELX_P
A
ARG
375
B
ARG
259
5
23
5
A
THR
377
B
THR
261
HELX_P
A
GLU
387
B
GLU
271
1
24
11
covale
1.336
B
HIS
283
A
C
HIS
167
1_555
B
PTR
284
A
N
PTR
168
1_555
covale
1.343
B
PTR
284
A
C
PTR
168
1_555
B
VAL
285
A
N
VAL
169
1_555
covale
1.335
A
HIS
283
B
C
HIS
167
1_555
A
PTR
284
B
N
PTR
168
1_555
covale
1.322
A
PTR
284
B
C
PTR
168
1_555
A
VAL
285
B
N
VAL
169
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
Drug Design, Enzyme Inhibitors, TRANSFERASE-TRANSFERASE INHIBITOR complex
B
PRO
199
A
PRO
83
1
B
PRO
200
A
PRO
84
-5.90
A
PRO
199
B
PRO
83
1
A
PRO
200
B
PRO
84
-1.68
B
A
A
B
B
117
B
390
1
A
117
A
390
1
A
1
A
401
1
B
1
B
401
1
ACK1_HUMAN
UNP
1
117
Q07912
LTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVV
LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRA
LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDC
PQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT
117
391
4EWH
117
391
Q07912
B
1
1
275
117
391
4EWH
117
391
Q07912
A
1
1
275
6
3
2
2
6
3
2
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
B
CYS
119
A
CYS
3
B
LEU
120
A
LEU
4
B
LEU
192
A
LEU
76
B
VAL
196
A
VAL
80
B
LYS
202
A
LYS
86
B
GLU
206
A
GLU
90
B
THR
152
A
THR
36
B
CYS
159
A
CYS
43
B
GLY
138
A
GLY
22
B
ASP
146
A
ASP
30
B
LEU
126
A
LEU
10
B
GLY
135
A
GLY
19
B
GLY
211
A
GLY
95
B
SER
212
A
SER
96
B
LEU
258
A
LEU
142
B
THR
262
A
THR
146
B
LEU
265
A
LEU
149
B
ILE
268
A
ILE
152
B
PHE
248
A
PHE
132
B
ILE
249
A
ILE
133
B
ARG
275
A
ARG
159
B
ALA
276
A
ALA
160
B
PTR
284
A
PTR
168
B
VAL
285
A
VAL
169
B
THR
306
A
THR
190
B
PHE
307
A
PHE
191
A
CYS
119
B
CYS
3
A
LEU
120
B
LEU
4
A
LEU
192
B
LEU
76
A
VAL
196
B
VAL
80
A
LYS
202
B
LYS
86
A
GLU
206
B
GLU
90
A
THR
152
B
THR
36
A
CYS
159
B
CYS
43
A
GLY
138
B
GLY
22
A
ASP
146
B
ASP
30
A
LEU
126
B
LEU
10
A
GLY
135
B
GLY
19
A
GLY
211
B
GLY
95
A
SER
212
B
SER
96
A
LEU
258
B
LEU
142
A
THR
262
B
THR
146
A
LEU
265
B
LEU
149
A
ILE
268
B
ILE
152
A
PHE
248
B
PHE
132
A
ILE
249
B
ILE
133
A
ARG
275
B
ARG
159
A
ALA
276
B
ALA
160
A
PTR
284
B
PTR
168
A
VAL
285
B
VAL
169
A
THR
306
B
THR
190
A
PHE
307
B
PHE
191
BINDING SITE FOR RESIDUE T77 B 401
Software
11
BINDING SITE FOR RESIDUE T77 A 401
Software
14
B
LEU
132
A
LEU
16
11
1_555
B
GLY
133
A
GLY
17
11
1_555
B
ASP
134
A
ASP
18
11
1_555
B
ALA
156
A
ALA
40
11
1_555
B
GLU
206
A
GLU
90
11
1_555
B
ALA
208
A
ALA
92
11
1_555
B
PRO
209
A
PRO
93
11
1_555
B
GLY
211
A
GLY
95
11
1_555
B
ARG
256
A
ARG
140
11
1_555
B
LEU
259
A
LEU
143
11
1_555
B
GLY
269
A
GLY
153
11
1_555
A
LEU
132
B
LEU
16
14
1_555
A
GLY
133
B
GLY
17
14
1_555
A
ASP
134
B
ASP
18
14
1_555
A
ALA
156
B
ALA
40
14
1_555
A
GLU
206
B
GLU
90
14
1_555
A
ALA
208
B
ALA
92
14
1_555
A
PRO
209
B
PRO
93
14
1_555
A
LEU
210
B
LEU
94
14
1_555
A
GLY
211
B
GLY
95
14
1_555
A
LYS
219
B
LYS
103
14
1_555
A
ARG
256
B
ARG
140
14
1_555
A
LEU
259
B
LEU
143
14
1_555
A
GLY
269
B
GLY
153
14
1_555
B
ASP
383
A
ASP
267
14
4_544
5
C 1 2 1