0.010199
0.005889
0.000000
0.000000
0.011777
0.000000
0.000000
0.000000
0.005137
0.00000
0.00000
0.00000
Kirouac, K.
Ling, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
98.046
98.046
194.649
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H16 N3 O13 P3
467.157
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
non-polymer
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C26 H23 N6 O7 P
562.471
n
2'-deoxy-8-(pyren-1-ylamino)guanosine 5'-(dihydrogen phosphate)
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
N
C
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
R
C
N
167
N
C
N
168
S
C
N
169
R
C
N
170
N
O
N
171
N
O
N
172
N
C
N
173
N
O
N
174
R
P
N
175
N
O
N
176
N
O
N
177
N
O
N
178
S
P
N
179
N
O
N
180
N
O
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
O
N
203
N
P
N
204
N
O
N
205
N
O
N
206
N
O
N
207
N
C
N
208
R
C
N
209
N
O
N
210
S
C
N
211
N
O
N
212
N
C
N
213
R
C
Y
214
N
N
Y
215
N
C
Y
216
N
N
Y
217
N
C
N
218
N
C
N
219
N
O
N
220
N
N
N
221
N
C
N
222
N
N
N
223
N
N
Y
224
N
C
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
P
N
240
N
O
N
241
N
O
N
242
N
O
N
243
N
C
N
244
R
C
N
245
S
C
N
246
N
C
N
247
R
C
N
248
N
O
Y
249
N
N
Y
250
N
C
Y
251
N
N
Y
252
N
C
N
253
N
C
N
254
N
O
N
255
N
N
N
256
N
C
N
257
N
N
N
258
N
N
Y
259
N
C
N
260
N
N
Y
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
O
N
301
N
H
N
302
N
O
N
303
N
P
N
304
N
O
N
305
N
O
N
306
N
O
N
307
N
C
N
308
R
C
N
309
N
O
N
310
S
C
N
311
N
O
N
312
N
C
N
313
R
C
N
314
N
N
N
315
N
C
N
316
N
O
N
317
N
N
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
O
N
346
N
N
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
N
Y
394
N
C
Y
395
N
C
Y
396
N
N
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
S
C
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
N
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
N
N
481
S
C
N
482
N
C
N
483
N
O
N
484
N
C
N
485
N
C
N
486
N
S
N
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
MG
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
N
512
N
O
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
N
N
525
S
C
N
526
N
C
N
527
N
O
N
528
N
C
N
529
N
C
N
530
N
C
N
531
N
O
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
N
N
542
S
C
N
543
N
C
N
544
N
O
N
545
N
C
N
546
N
O
N
547
N
O
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
N
N
556
S
C
N
557
N
C
N
558
N
O
N
559
R
C
N
560
N
O
N
561
N
C
N
562
N
O
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
N
N
573
S
C
N
574
N
C
N
575
N
O
N
576
N
C
Y
577
N
C
Y
578
N
C
Y
579
N
C
Y
580
N
C
Y
581
N
C
Y
582
N
C
N
583
N
O
N
584
N
O
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
N
N
597
S
C
N
598
N
C
N
599
N
O
N
600
N
C
N
601
N
C
N
602
N
C
N
603
N
O
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
sing
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
doub
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
Y
252
N
doub
Y
253
N
sing
Y
254
N
sing
Y
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
Y
259
N
sing
Y
260
N
doub
Y
261
N
doub
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
Y
266
N
sing
Y
267
N
doub
Y
268
N
doub
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
Y
272
N
sing
N
273
N
sing
N
274
N
sing
Y
275
N
doub
Y
276
N
sing
Y
277
N
sing
N
278
N
doub
Y
279
N
sing
Y
280
N
doub
Y
281
N
doub
Y
282
N
sing
Y
283
N
doub
Y
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
sing
Y
404
N
doub
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
doub
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
Y
511
N
doub
Y
512
N
sing
Y
513
N
sing
N
514
N
sing
Y
515
N
doub
N
516
N
sing
Y
517
N
doub
N
518
N
sing
Y
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
doub
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
doub
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
doub
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
doub
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
Y
580
N
doub
Y
581
N
sing
Y
582
N
sing
N
583
N
sing
Y
584
N
doub
N
585
N
sing
Y
586
N
doub
N
587
N
sing
Y
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
doub
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
41
2060
2071
10.1093/nar/gks1296
23268450
Replication of a carcinogenic nitropyrene DNA lesion by human Y-family DNA polymerase.
2013
10.2210/pdb4eyh/pdb
pdb_00004eyh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-08-30
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
24-ID-E
APS
0.97918
SYNCHROTRON
APS BEAMLINE 24-ID-E
47027.344
DNA polymerase iota
2.7.7.7
UNP residues 26-445
1
man
polymer
2673.865
DNA template
1
syn
polymer
2107.413
DNA primer
1
syn
polymer
467.157
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
1
syn
non-polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
18.015
water
28
nat
water
Eta2, RAD30 homolog B
no
no
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
B
polypeptide(L)
no
yes
(DG8)(DG)(DG)(DG)(DT)(DC)(DC)(DT)
XGGGTCCT
T
polydeoxyribonucleotide
no
no
(DA)(DG)(DG)(DA)(DC)(DC)(DC)
AGGACCC
P
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
POLI, RAD30B
9606
Homo sapiens
562
Escherichia coli
1
2.62
53.09
VAPOR DIFFUSION, HANGING DROP
6.5
15% PEG 5000MME, 0.2 M MH4SO4, 0.1 M MES pH 6.5, 2.5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
291.15
-8.415
1
19
T
841
P
873
4.225
T_DG841:DC873_P
1
-10.350
0.396
-0.208
-0.239
-3.326
1
19
T
842
P
872
2.428
T_DG842:DC872_P
2
-6.232
0.616
0.535
-0.154
-11.405
1
19
T
843
P
871
1.322
T_DG843:DC871_P
3
-6.807
0.291
-0.300
-0.150
-8.729
1
20
T
844
P
870
-4.049
T_DT844:DA870_P
4
-6.381
-0.447
0.411
-0.208
-2.843
1
19
T
845
P
869
2.844
T_DC845:DG869_P
5
-2.005
0.968
0.008
-0.313
-8.274
1
19
T
846
P
868
-2.332
T_DC846:DG868_P
6
-10.560
0.424
0.184
-0.086
-5.302
1
20
T
847
P
867
-5.069
T_DT847:DA867_P
7
-9.880
-0.367
0.118
-0.383
2.614
36.178
T
T
841
842
21.539
P
P
873
872
3.214
13.060
-0.419
-1.203
TT_DG841DG842:DC872DC873_PP
1
-4.348
7.171
33.539
-3.643
0.107
3.075
27.562
T
T
842
843
13.732
P
P
872
871
3.519
6.452
0.042
-1.330
TT_DG842DG843:DC871DC872_PP
2
4.695
-9.992
26.403
-4.417
1.094
3.497
32.970
T
T
843
844
-6.185
P
P
871
870
3.289
-3.482
-0.801
-1.298
TT_DG843DT844:DA870DC871_PP
3
-6.531
11.601
32.151
-1.664
0.244
3.159
38.242
T
T
844
845
0.186
P
P
870
869
3.155
0.122
0.214
-0.761
TT_DT844DC845:DG869DA870_PP
4
3.516
-5.374
38.086
-1.177
0.101
3.391
34.807
T
T
845
846
6.017
P
P
869
868
3.460
3.593
-0.837
-0.625
TT_DC845DC846:DG868DG869_PP
5
-0.492
0.823
34.624
-1.619
1.321
3.369
22.381
T
T
846
847
-0.886
P
P
868
867
3.349
-0.344
-0.176
-1.193
TT_DC846DT847:DA867DG868_PP
6
-0.361
0.929
22.376
-2.942
0.314
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-09
1
1
2013-02-20
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-05-01
REL
REL
DCP
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
MG
MAGNESIUM ION
HOH
water
Synthesized
sample
Synthesized
sample
3GV5
PDB ENTRY 3GV5
PDB
experimental model
CTP
875
4
DCP
DCP
501
B
MG
1
5
MG
MG
502
B
MG
1
5
MG
MG
503
B
MG
1
5
MG
MG
504
B
HOH
4
6
HOH
HOH
601
B
HOH
5
6
HOH
HOH
602
B
HOH
6
6
HOH
HOH
603
B
HOH
7
6
HOH
HOH
604
B
HOH
8
6
HOH
HOH
605
B
HOH
9
6
HOH
HOH
606
B
HOH
11
6
HOH
HOH
607
B
HOH
14
6
HOH
HOH
608
B
HOH
17
6
HOH
HOH
609
B
HOH
21
6
HOH
HOH
610
B
HOH
22
6
HOH
HOH
611
B
HOH
23
6
HOH
HOH
612
B
HOH
25
6
HOH
HOH
613
B
HOH
26
6
HOH
HOH
614
B
HOH
29
6
HOH
HOH
615
B
HOH
31
6
HOH
HOH
616
B
HOH
32
6
HOH
HOH
617
B
HOH
33
6
HOH
HOH
618
B
HOH
35
6
HOH
HOH
619
B
HOH
36
6
HOH
HOH
620
B
HOH
37
6
HOH
HOH
621
B
HOH
38
6
HOH
HOH
622
B
HOH
39
6
HOH
HOH
623
B
HOH
40
6
HOH
HOH
624
B
HOH
41
6
HOH
HOH
625
B
HOH
3
6
HOH
HOH
901
T
HOH
34
6
HOH
HOH
902
T
HOH
30
6
HOH
HOH
901
P
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
n
12
12
B
n
13
13
B
n
14
14
B
n
15
15
B
n
16
16
B
n
17
17
B
n
18
18
B
n
19
19
B
n
20
20
B
n
21
21
B
n
22
22
B
n
23
23
B
n
24
24
B
n
25
25
B
SER
26
n
26
SER
26
B
SER
27
n
27
SER
27
B
ARG
28
n
28
ARG
28
B
VAL
29
n
29
VAL
29
B
ILE
30
n
30
ILE
30
B
VAL
31
n
31
VAL
31
B
HIS
32
n
32
HIS
32
B
VAL
33
n
33
VAL
33
B
ASP
34
n
34
ASP
34
B
LEU
35
n
35
LEU
35
B
ASP
36
n
36
ASP
36
B
CYS
37
n
37
CYS
37
B
PHE
38
n
38
PHE
38
B
TYR
39
n
39
TYR
39
B
ALA
40
n
40
ALA
40
B
GLN
41
n
41
GLN
41
B
VAL
42
n
42
VAL
42
B
GLU
43
n
43
GLU
43
B
MET
44
n
44
MET
44
B
ILE
45
n
45
ILE
45
B
SER
46
n
46
SER
46
B
ASN
47
n
47
ASN
47
B
PRO
48
n
48
PRO
48
B
GLU
49
n
49
GLU
49
B
LEU
50
n
50
LEU
50
B
LYS
51
n
51
LYS
51
B
ASP
52
n
52
ASP
52
B
LYS
53
n
53
LYS
53
B
PRO
54
n
54
PRO
54
B
LEU
55
n
55
LEU
55
B
GLY
56
n
56
GLY
56
B
VAL
57
n
57
VAL
57
B
GLN
58
n
58
GLN
58
B
GLN
59
n
59
GLN
59
B
LYS
60
n
60
LYS
60
B
TYR
61
n
61
TYR
61
B
LEU
62
n
62
LEU
62
B
VAL
63
n
63
VAL
63
B
VAL
64
n
64
VAL
64
B
THR
65
n
65
THR
65
B
CYS
66
n
66
CYS
66
B
ASN
67
n
67
ASN
67
B
TYR
68
n
68
TYR
68
B
GLU
69
n
69
GLU
69
B
ALA
70
n
70
ALA
70
B
ARG
71
n
71
ARG
71
B
LYS
72
n
72
LYS
72
B
LEU
73
n
73
LEU
73
B
GLY
74
n
74
GLY
74
B
VAL
75
n
75
VAL
75
B
LYS
76
n
76
LYS
76
B
LYS
77
n
77
LYS
77
B
LEU
78
n
78
LEU
78
B
MET
79
n
79
MET
79
B
ASN
80
n
80
ASN
80
B
VAL
81
n
81
VAL
81
B
ARG
82
n
82
ARG
82
B
ASP
83
n
83
ASP
83
B
ALA
84
n
84
ALA
84
B
LYS
85
n
85
LYS
85
B
GLU
86
n
86
GLU
86
B
LYS
87
n
87
LYS
87
B
CYS
88
n
88
CYS
88
B
PRO
89
n
89
PRO
89
B
GLN
90
n
90
GLN
90
B
LEU
91
n
91
LEU
91
B
VAL
92
n
92
VAL
92
B
LEU
93
n
93
LEU
93
B
VAL
94
n
94
VAL
94
B
ASN
95
n
95
ASN
95
B
GLY
96
n
96
GLY
96
B
GLU
97
n
97
GLU
97
B
ASP
98
n
98
ASP
98
B
LEU
99
n
99
LEU
99
B
THR
100
n
100
THR
100
B
ARG
101
n
101
ARG
101
B
TYR
102
n
102
TYR
102
B
ARG
103
n
103
ARG
103
B
GLU
104
n
104
GLU
104
B
MET
105
n
105
MET
105
B
SER
106
n
106
SER
106
B
TYR
107
n
107
TYR
107
B
LYS
108
n
108
LYS
108
B
VAL
109
n
109
VAL
109
B
THR
110
n
110
THR
110
B
GLU
111
n
111
GLU
111
B
LEU
112
n
112
LEU
112
B
LEU
113
n
113
LEU
113
B
GLU
114
n
114
GLU
114
B
GLU
115
n
115
GLU
115
B
PHE
116
n
116
PHE
116
B
SER
117
n
117
SER
117
B
PRO
118
n
118
PRO
118
B
VAL
119
n
119
VAL
119
B
VAL
120
n
120
VAL
120
B
GLU
121
n
121
GLU
121
B
ARG
122
n
122
ARG
122
B
LEU
123
n
123
LEU
123
B
GLY
124
n
124
GLY
124
B
PHE
125
n
125
PHE
125
B
ASP
126
n
126
ASP
126
B
GLU
127
n
127
GLU
127
B
ASN
128
n
128
ASN
128
B
PHE
129
n
129
PHE
129
B
VAL
130
n
130
VAL
130
B
ASP
131
n
131
ASP
131
B
LEU
132
n
132
LEU
132
B
THR
133
n
133
THR
133
B
GLU
134
n
134
GLU
134
B
MET
135
n
135
MET
135
B
VAL
136
n
136
VAL
136
B
GLU
137
n
137
GLU
137
B
LYS
138
n
138
LYS
138
B
ARG
139
n
139
ARG
139
B
LEU
140
n
140
LEU
140
B
GLN
141
n
141
GLN
141
B
GLN
142
n
142
GLN
142
B
LEU
143
n
143
LEU
143
B
GLN
144
n
144
GLN
144
B
SER
145
n
145
SER
145
B
ASP
146
n
146
ASP
146
B
GLU
147
n
147
GLU
147
B
LEU
148
n
148
LEU
148
B
SER
149
n
149
SER
149
B
ALA
150
n
150
ALA
150
B
VAL
151
n
151
VAL
151
B
THR
152
n
152
THR
152
B
VAL
153
n
153
VAL
153
B
SER
154
n
154
SER
154
B
GLY
155
n
155
GLY
155
B
HIS
156
n
156
HIS
156
B
VAL
157
n
157
VAL
157
B
TYR
158
n
158
TYR
158
B
ASN
159
n
159
ASN
159
B
ASN
160
n
160
ASN
160
B
GLN
161
n
161
GLN
161
B
SER
162
n
162
SER
162
B
ILE
163
n
163
ILE
163
B
ASN
164
n
164
ASN
164
B
LEU
165
n
165
LEU
165
B
LEU
166
n
166
LEU
166
B
ASP
167
n
167
ASP
167
B
VAL
168
n
168
VAL
168
B
LEU
169
n
169
LEU
169
B
HIS
170
n
170
HIS
170
B
ILE
171
n
171
ILE
171
B
ARG
172
n
172
ARG
172
B
LEU
173
n
173
LEU
173
B
LEU
174
n
174
LEU
174
B
VAL
175
n
175
VAL
175
B
GLY
176
n
176
GLY
176
B
SER
177
n
177
SER
177
B
GLN
178
n
178
GLN
178
B
ILE
179
n
179
ILE
179
B
ALA
180
n
180
ALA
180
B
ALA
181
n
181
ALA
181
B
GLU
182
n
182
GLU
182
B
MET
183
n
183
MET
183
B
ARG
184
n
184
ARG
184
B
GLU
185
n
185
GLU
185
B
ALA
186
n
186
ALA
186
B
MET
187
n
187
MET
187
B
TYR
188
n
188
TYR
188
B
ASN
189
n
189
ASN
189
B
GLN
190
n
190
GLN
190
B
LEU
191
n
191
LEU
191
B
GLY
192
n
192
GLY
192
B
LEU
193
n
193
LEU
193
B
THR
194
n
194
THR
194
B
GLY
195
n
195
GLY
195
B
CYS
196
n
196
CYS
196
B
ALA
197
n
197
ALA
197
B
GLY
198
n
198
GLY
198
B
VAL
199
n
199
VAL
199
B
ALA
200
n
200
ALA
200
B
SER
201
n
201
SER
201
B
ASN
202
n
202
ASN
202
B
LYS
203
n
203
LYS
203
B
LEU
204
n
204
LEU
204
B
LEU
205
n
205
LEU
205
B
ALA
206
n
206
ALA
206
B
LYS
207
n
207
LYS
207
B
LEU
208
n
208
LEU
208
B
VAL
209
n
209
VAL
209
B
SER
210
n
210
SER
210
B
GLY
211
n
211
GLY
211
B
VAL
212
n
212
VAL
212
B
PHE
213
n
213
PHE
213
B
LYS
214
n
214
LYS
214
B
PRO
215
n
215
PRO
215
B
ASN
216
n
216
ASN
216
B
GLN
217
n
217
GLN
217
B
GLN
218
n
218
GLN
218
B
THR
219
n
219
THR
219
B
VAL
220
n
220
VAL
220
B
LEU
221
n
221
LEU
221
B
LEU
222
n
222
LEU
222
B
PRO
223
n
223
PRO
223
B
GLU
224
n
224
GLU
224
B
SER
225
n
225
SER
225
B
CYS
226
n
226
CYS
226
B
GLN
227
n
227
GLN
227
B
HIS
228
n
228
HIS
228
B
LEU
229
n
229
LEU
229
B
ILE
230
n
230
ILE
230
B
HIS
231
n
231
HIS
231
B
SER
232
n
232
SER
232
B
LEU
233
n
233
LEU
233
B
ASN
234
n
234
ASN
234
B
HIS
235
n
235
HIS
235
B
ILE
236
n
236
ILE
236
B
LYS
237
n
237
LYS
237
B
GLU
238
n
238
GLU
238
B
ILE
239
n
239
ILE
239
B
PRO
240
n
240
PRO
240
B
GLY
241
n
241
GLY
241
B
ILE
242
n
242
ILE
242
B
GLY
243
n
243
GLY
243
B
TYR
244
n
244
TYR
244
B
LYS
245
n
245
LYS
245
B
THR
246
n
246
THR
246
B
ALA
247
n
247
ALA
247
B
LYS
248
n
248
LYS
248
B
CYS
249
n
249
CYS
249
B
LEU
250
n
250
LEU
250
B
GLU
251
n
251
GLU
251
B
ALA
252
n
252
ALA
252
B
LEU
253
n
253
LEU
253
B
GLY
254
n
254
GLY
254
B
ILE
255
n
255
ILE
255
B
ASN
256
n
256
ASN
256
B
SER
257
n
257
SER
257
B
VAL
258
n
258
VAL
258
B
ARG
259
n
259
ARG
259
B
ASP
260
n
260
ASP
260
B
LEU
261
n
261
LEU
261
B
GLN
262
n
262
GLN
262
B
THR
263
n
263
THR
263
B
PHE
264
n
264
PHE
264
B
SER
265
n
265
SER
265
B
PRO
266
n
266
PRO
266
B
LYS
267
n
267
LYS
267
B
ILE
268
n
268
ILE
268
B
LEU
269
n
269
LEU
269
B
GLU
270
n
270
GLU
270
B
LYS
271
n
271
LYS
271
B
GLU
272
n
272
GLU
272
B
LEU
273
n
273
LEU
273
B
GLY
274
n
274
GLY
274
B
ILE
275
n
275
ILE
275
B
SER
276
n
276
SER
276
B
VAL
277
n
277
VAL
277
B
ALA
278
n
278
ALA
278
B
GLN
279
n
279
GLN
279
B
ARG
280
n
280
ARG
280
B
ILE
281
n
281
ILE
281
B
GLN
282
n
282
GLN
282
B
LYS
283
n
283
LYS
283
B
LEU
284
n
284
LEU
284
B
SER
285
n
285
SER
285
B
PHE
286
n
286
PHE
286
B
GLY
287
n
287
GLY
287
B
GLU
288
n
288
GLU
288
B
ASP
289
n
289
ASP
289
B
ASN
290
n
290
ASN
290
B
SER
291
n
291
SER
291
B
PRO
292
n
292
PRO
292
B
VAL
293
n
293
VAL
293
B
ILE
294
n
294
ILE
294
B
LEU
295
n
295
LEU
295
B
SER
296
n
296
SER
296
B
GLY
297
n
297
GLY
297
B
PRO
298
n
298
PRO
298
B
PRO
299
n
299
PRO
299
B
GLN
300
n
300
GLN
300
B
SER
301
n
301
SER
301
B
PHE
302
n
302
PHE
302
B
SER
303
n
303
SER
303
B
GLU
304
n
304
GLU
304
B
GLU
305
n
305
GLU
305
B
ASP
306
n
306
ASP
306
B
SER
307
n
307
SER
307
B
PHE
308
n
308
PHE
308
B
LYS
309
n
309
LYS
309
B
LYS
310
n
310
LYS
310
B
CYS
311
n
311
CYS
311
B
SER
312
n
312
SER
312
B
SER
313
n
313
SER
313
B
GLU
314
n
314
GLU
314
B
VAL
315
n
315
VAL
315
B
GLU
316
n
316
GLU
316
B
ALA
317
n
317
ALA
317
B
LYS
318
n
318
LYS
318
B
ASN
319
n
319
ASN
319
B
LYS
320
n
320
LYS
320
B
ILE
321
n
321
ILE
321
B
GLU
322
n
322
GLU
322
B
GLU
323
n
323
GLU
323
B
LEU
324
n
324
LEU
324
B
LEU
325
n
325
LEU
325
B
ALA
326
n
326
ALA
326
B
SER
327
n
327
SER
327
B
LEU
328
n
328
LEU
328
B
LEU
329
n
329
LEU
329
B
ASN
330
n
330
ASN
330
B
ARG
331
n
331
ARG
331
B
ALA
332
n
332
VAL
332
B
CYS
333
n
333
CYS
333
B
ALA
334
n
334
GLN
334
B
ASP
335
n
335
ASP
335
B
GLY
336
n
336
GLY
336
B
ARG
337
n
337
ARG
337
B
ALA
338
n
338
LYS
338
B
PRO
339
n
339
PRO
339
B
HIS
340
n
340
HIS
340
B
THR
341
n
341
THR
341
B
VAL
342
n
342
VAL
342
B
ARG
343
n
343
ARG
343
B
LEU
344
n
344
LEU
344
B
ILE
345
n
345
ILE
345
B
ILE
346
n
346
ILE
346
B
ARG
347
n
347
ARG
347
B
ARG
348
n
348
ARG
348
B
n
349
349
B
n
350
350
B
n
351
351
B
n
352
352
B
n
353
353
B
n
354
354
B
n
355
355
B
GLY
356
n
356
GLY
356
B
ARG
357
n
357
ARG
357
B
GLU
358
n
358
GLU
358
B
SER
359
n
359
SER
359
B
ARG
360
n
360
ARG
360
B
GLN
361
n
361
GLN
361
B
CYS
362
n
362
CYS
362
B
PRO
363
n
363
PRO
363
B
ILE
364
n
364
ILE
364
B
PRO
365
n
365
PRO
365
B
SER
366
n
366
SER
366
B
HIS
367
n
367
HIS
367
B
VAL
368
n
368
VAL
368
B
ILE
369
n
369
ILE
369
B
GLN
370
n
370
GLN
370
B
LYS
371
n
371
LYS
371
B
n
372
372
B
n
373
373
B
n
374
374
B
n
375
375
B
n
376
376
B
TYR
377
n
377
TYR
377
B
ASP
378
n
378
ASP
378
B
VAL
379
n
379
VAL
379
B
MET
380
n
380
MET
380
B
THR
381
n
381
THR
381
B
PRO
382
n
382
PRO
382
B
MET
383
n
383
MET
383
B
VAL
384
n
384
VAL
384
B
ASP
385
n
385
ASP
385
B
ILE
386
n
386
ILE
386
B
LEU
387
n
387
LEU
387
B
MET
388
n
388
MET
388
B
LYS
389
n
389
LYS
389
B
LEU
390
n
390
LEU
390
B
PHE
391
n
391
PHE
391
B
ARG
392
n
392
ARG
392
B
ASN
393
n
393
ASN
393
B
MET
394
n
394
MET
394
B
VAL
395
n
395
VAL
395
B
ASN
396
n
396
ASN
396
B
VAL
397
n
397
VAL
397
B
LYS
398
n
398
LYS
398
B
MET
399
n
399
MET
399
B
PRO
400
n
400
PRO
400
B
PHE
401
n
401
PHE
401
B
HIS
402
n
402
HIS
402
B
LEU
403
n
403
LEU
403
B
THR
404
n
404
THR
404
B
LEU
405
n
405
LEU
405
B
LEU
406
n
406
LEU
406
B
SER
407
n
407
SER
407
B
VAL
408
n
408
VAL
408
B
CYS
409
n
409
CYS
409
B
PHE
410
n
410
PHE
410
B
CYS
411
n
411
CYS
411
B
ASN
412
n
412
ASN
412
B
LEU
413
n
413
LEU
413
B
LYS
414
n
414
LYS
414
B
n
415
415
B
n
416
416
B
n
417
417
B
n
418
418
B
n
419
419
B
n
420
420
B
DG8
840
n
1
DG8
840
T
GD
841
n
2
DG
841
T
GD
842
n
3
DG
842
T
GD
843
n
4
DG
843
T
TD
844
n
5
DT
844
T
CD
845
n
6
DC
845
T
CD
846
n
7
DC
846
T
TD
847
n
8
DT
847
T
AD
867
n
1
DA
867
P
GD
868
n
2
DG
868
P
GD
869
n
3
DG
869
P
AD
870
n
4
DA
870
P
CD
871
n
5
DC
871
P
CD
872
n
6
DC
872
P
CD
873
n
7
DC
873
P
2.2131
0.7121
1.2648
3.8136
-4.2445
1.5832
0.1401
0.6093
0.4446
-0.3432
-0.5042
-0.3330
0.6130
-0.0581
-0.0000
0.5839
-0.0229
-0.1258
0.6596
0.0582
0.7271
refined
-9.5332
19.9471
-14.3959
X-RAY DIFFRACTION
0.4399
-0.3821
-0.1134
0.4249
-0.6122
0.6942
-0.2484
-0.5546
-0.9659
-0.8892
-0.5887
-0.7477
0.6259
0.6686
0.0000
1.4231
0.3025
0.2213
1.5535
0.2193
1.2872
refined
6.6464
14.8527
-23.2468
X-RAY DIFFRACTION
2.9623
-0.2930
0.7583
2.8378
-1.1747
3.9076
-0.0373
-0.0694
0.0378
0.0908
-0.2342
0.3272
0.1660
-0.5097
0.0000
0.7143
-0.0269
-0.1326
0.6150
-0.0948
0.7266
refined
-17.5175
19.9423
-6.6105
X-RAY DIFFRACTION
2.0857
1.6391
1.9054
3.3647
1.6542
3.3204
-0.0259
0.0400
0.1968
0.1120
-0.1645
-0.3257
-0.2682
0.1886
0.0000
0.6714
0.0170
-0.1228
0.6521
0.0342
0.6790
refined
-3.5049
30.7500
-1.5750
X-RAY DIFFRACTION
1.3900
-0.8004
-0.6575
3.6160
-2.0304
6.8327
0.6078
0.4206
-0.2695
-0.3722
-0.0935
0.0131
0.5636
0.7622
0.0000
1.0780
0.2411
-0.0012
1.2887
0.1338
0.9563
refined
-3.9659
44.0685
-34.3043
X-RAY DIFFRACTION
0.3438
1.6531
1.5748
2.2738
-2.3404
0.7644
-0.2901
0.7975
-0.4333
-0.5646
0.4337
-0.2264
0.1651
0.2173
0.0000
0.9753
0.0349
-0.0946
0.9321
0.1369
1.1115
refined
-2.4863
40.0529
-17.1446
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain B and resid 26:46)
X-RAY DIFFRACTION
2
(chain B and resid 47:94)
X-RAY DIFFRACTION
3
(chain B and resid 95:187)
X-RAY DIFFRACTION
4
(chain B and resid 188:301)
X-RAY DIFFRACTION
5
(chain B and resid 302:414)
X-RAY DIFFRACTION
6
(chain T or chain P)
author_and_software_defined_assembly
PISA
3
trimeric
4410
-56
19500
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
502
E
MG
MG
1_555
B
LEU
35
A
O
LEU
35
1_555
98.7
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
502
E
MG
MG
1_555
B
DCP
501
D
O3G
DCP
1_555
130.3
B
LEU
35
A
O
LEU
35
1_555
B
MG
502
E
MG
MG
1_555
B
DCP
501
D
O3G
DCP
1_555
107.2
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
502
E
MG
MG
1_555
B
DCP
501
D
O2B
DCP
1_555
93.6
B
LEU
35
A
O
LEU
35
1_555
B
MG
502
E
MG
MG
1_555
B
DCP
501
D
O2B
DCP
1_555
61.4
B
DCP
501
D
O3G
DCP
1_555
B
MG
502
E
MG
MG
1_555
B
DCP
501
D
O2B
DCP
1_555
65.0
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
502
E
MG
MG
1_555
B
HOH
601
H
O
HOH
1_555
134.0
B
LEU
35
A
O
LEU
35
1_555
B
MG
502
E
MG
MG
1_555
B
HOH
601
H
O
HOH
1_555
101.0
B
DCP
501
D
O3G
DCP
1_555
B
MG
502
E
MG
MG
1_555
B
HOH
601
H
O
HOH
1_555
81.7
B
DCP
501
D
O2B
DCP
1_555
B
MG
502
E
MG
MG
1_555
B
HOH
601
H
O
HOH
1_555
132.3
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
504
G
MG
MG
1_555
B
GLU
127
A
OE2
GLU
127
1_555
79.4
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
504
G
MG
MG
1_555
B
DCP
501
D
O1A
DCP
1_555
94.0
B
GLU
127
A
OE2
GLU
127
1_555
B
MG
504
G
MG
MG
1_555
B
DCP
501
D
O1A
DCP
1_555
112.5
B
LYS
237
A
O
LYS
237
1_555
B
MG
503
F
MG
MG
1_555
B
ILE
239
A
O
ILE
239
1_555
102.5
B
LYS
237
A
O
LYS
237
1_555
B
MG
503
F
MG
MG
1_555
B
ILE
242
A
O
ILE
242
1_555
86.5
B
ILE
239
A
O
ILE
239
1_555
B
MG
503
F
MG
MG
1_555
B
ILE
242
A
O
ILE
242
1_555
79.5
B
LYS
237
A
O
LYS
237
1_555
B
MG
503
F
MG
MG
1_555
B
HOH
624
H
O
HOH
1_555
90.0
B
ILE
239
A
O
ILE
239
1_555
B
MG
503
F
MG
MG
1_555
B
HOH
624
H
O
HOH
1_555
150.1
B
ILE
242
A
O
ILE
242
1_555
B
MG
503
F
MG
MG
1_555
B
HOH
624
H
O
HOH
1_555
74.1
B
LYS
237
A
O
LYS
237
1_555
B
MG
503
F
MG
MG
1_555
P
DC
872
C
OP1
DC
6
1_555
169.6
B
ILE
239
A
O
ILE
239
1_555
B
MG
503
F
MG
MG
1_555
P
DC
872
C
OP1
DC
6
1_555
81.2
B
ILE
242
A
O
ILE
242
1_555
B
MG
503
F
MG
MG
1_555
P
DC
872
C
OP1
DC
6
1_555
84.6
B
HOH
624
H
O
HOH
1_555
B
MG
503
F
MG
MG
1_555
P
DC
872
C
OP1
DC
6
1_555
82.4
B
LYS
237
A
O
LYS
237
1_555
B
MG
503
F
MG
MG
1_555
P
HOH
901
J
O
HOH
1_555
106.0
B
ILE
239
A
O
ILE
239
1_555
B
MG
503
F
MG
MG
1_555
P
HOH
901
J
O
HOH
1_555
111.4
B
ILE
242
A
O
ILE
242
1_555
B
MG
503
F
MG
MG
1_555
P
HOH
901
J
O
HOH
1_555
160.4
B
HOH
624
H
O
HOH
1_555
B
MG
503
F
MG
MG
1_555
P
HOH
901
J
O
HOH
1_555
90.6
P
DC
872
C
OP1
DC
6
1_555
B
MG
503
F
MG
MG
1_555
P
HOH
901
J
O
HOH
1_555
81.2
T
DG8
840
B
DG8
1
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
GLU
121
A
N
GLU
121
B
O
PHE
129
A
O
PHE
129
B
O
ASN
128
A
O
ASN
128
B
N
VAL
33
A
N
VAL
33
B
N
ASP
34
A
N
ASP
34
B
O
CYS
196
A
O
CYS
196
B
N
ALA
197
A
N
ALA
197
B
O
THR
219
A
O
THR
219
B
O
GLN
218
A
O
GLN
218
B
N
HIS
156
A
N
HIS
156
B
O
MET
79
A
O
MET
79
B
N
VAL
63
A
N
VAL
63
B
O
LEU
62
A
O
LEU
62
B
N
GLN
59
A
N
GLN
59
B
N
GLN
58
A
N
GLN
58
B
O
VAL
94
A
O
VAL
94
B
N
ASP
306
A
N
ASP
306
B
O
LEU
406
A
O
LEU
406
B
O
SER
407
A
O
SER
407
B
N
ILE
345
A
N
ILE
345
B
N
LEU
344
A
N
LEU
344
B
O
ARG
360
A
O
ARG
360
1
B
CG
ASN
47
A
CG
ASN
47
1
Y
1
B
OD1
ASN
47
A
OD1
ASN
47
1
Y
1
B
ND2
ASN
47
A
ND2
ASN
47
1
Y
1
B
CG
GLU
49
A
CG
GLU
49
1
Y
1
B
CD
GLU
49
A
CD
GLU
49
1
Y
1
B
OE1
GLU
49
A
OE1
GLU
49
1
Y
1
B
OE2
GLU
49
A
OE2
GLU
49
1
Y
1
B
CG
LYS
51
A
CG
LYS
51
1
Y
1
B
CD
LYS
51
A
CD
LYS
51
1
Y
1
B
CE
LYS
51
A
CE
LYS
51
1
Y
1
B
NZ
LYS
51
A
NZ
LYS
51
1
Y
1
B
CG
ASP
52
A
CG
ASP
52
1
Y
1
B
OD1
ASP
52
A
OD1
ASP
52
1
Y
1
B
OD2
ASP
52
A
OD2
ASP
52
1
Y
1
B
CG
LYS
53
A
CG
LYS
53
1
Y
1
B
CD
LYS
53
A
CD
LYS
53
1
Y
1
B
CE
LYS
53
A
CE
LYS
53
1
Y
1
B
NZ
LYS
53
A
NZ
LYS
53
1
Y
1
B
CG
LYS
72
A
CG
LYS
72
1
Y
1
B
CD
LYS
72
A
CD
LYS
72
1
Y
1
B
CE
LYS
72
A
CE
LYS
72
1
Y
1
B
NZ
LYS
72
A
NZ
LYS
72
1
Y
1
B
CG
LYS
76
A
CG
LYS
76
1
Y
1
B
CD
LYS
76
A
CD
LYS
76
1
Y
1
B
CE
LYS
76
A
CE
LYS
76
1
Y
1
B
NZ
LYS
76
A
NZ
LYS
76
1
Y
1
B
CG
ARG
82
A
CG
ARG
82
1
Y
1
B
CD
ARG
82
A
CD
ARG
82
1
Y
1
B
NE
ARG
82
A
NE
ARG
82
1
Y
1
B
CZ
ARG
82
A
CZ
ARG
82
1
Y
1
B
NH1
ARG
82
A
NH1
ARG
82
1
Y
1
B
NH2
ARG
82
A
NH2
ARG
82
1
Y
1
B
CE
LYS
85
A
CE
LYS
85
1
Y
1
B
NZ
LYS
85
A
NZ
LYS
85
1
Y
1
B
CG
GLU
86
A
CG
GLU
86
1
Y
1
B
CD
GLU
86
A
CD
GLU
86
1
Y
1
B
OE1
GLU
86
A
OE1
GLU
86
1
Y
1
B
OE2
GLU
86
A
OE2
GLU
86
1
Y
1
B
CG
LYS
87
A
CG
LYS
87
1
Y
1
B
CD
LYS
87
A
CD
LYS
87
1
Y
1
B
CE
LYS
87
A
CE
LYS
87
1
Y
1
B
NZ
LYS
87
A
NZ
LYS
87
1
Y
1
B
CG
GLN
141
A
CG
GLN
141
1
Y
1
B
CD
GLN
141
A
CD
GLN
141
1
Y
1
B
OE1
GLN
141
A
OE1
GLN
141
1
Y
1
B
NE2
GLN
141
A
NE2
GLN
141
1
Y
1
B
CG
GLN
144
A
CG
GLN
144
1
Y
1
B
CD
GLN
144
A
CD
GLN
144
1
Y
1
B
OE1
GLN
144
A
OE1
GLN
144
1
Y
1
B
NE2
GLN
144
A
NE2
GLN
144
1
Y
1
B
OG
SER
145
A
OG
SER
145
1
Y
1
B
CG
ASP
146
A
CG
ASP
146
1
Y
1
B
OD1
ASP
146
A
OD1
ASP
146
1
Y
1
B
OD2
ASP
146
A
OD2
ASP
146
1
Y
1
B
CD
LYS
248
A
CD
LYS
248
1
Y
1
B
CE
LYS
248
A
CE
LYS
248
1
Y
1
B
NZ
LYS
248
A
NZ
LYS
248
1
Y
1
B
CG
LYS
271
A
CG
LYS
271
1
Y
1
B
CD
LYS
271
A
CD
LYS
271
1
Y
1
B
CE
LYS
271
A
CE
LYS
271
1
Y
1
B
NZ
LYS
271
A
NZ
LYS
271
1
Y
1
B
CG
LYS
309
A
CG
LYS
309
1
Y
1
B
CD
LYS
309
A
CD
LYS
309
1
Y
1
B
CE
LYS
309
A
CE
LYS
309
1
Y
1
B
NZ
LYS
309
A
NZ
LYS
309
1
Y
1
B
CG
LYS
310
A
CG
LYS
310
1
Y
1
B
CD
LYS
310
A
CD
LYS
310
1
Y
1
B
CE
LYS
310
A
CE
LYS
310
1
Y
1
B
NZ
LYS
310
A
NZ
LYS
310
1
Y
1
B
CG1
VAL
315
A
CG1
VAL
315
1
Y
1
B
CG2
VAL
315
A
CG2
VAL
315
1
Y
1
B
CD
LYS
318
A
CD
LYS
318
1
Y
1
B
CE
LYS
318
A
CE
LYS
318
1
Y
1
B
NZ
LYS
318
A
NZ
LYS
318
1
Y
1
B
CG
ASN
319
A
CG
ASN
319
1
Y
1
B
OD1
ASN
319
A
OD1
ASN
319
1
Y
1
B
ND2
ASN
319
A
ND2
ASN
319
1
Y
1
B
CG1
VAL
332
A
CG1
VAL
332
1
Y
1
B
CG2
VAL
332
A
CG2
VAL
332
1
Y
1
B
CG
GLN
334
A
CG
GLN
334
1
Y
1
B
CD
GLN
334
A
CD
GLN
334
1
Y
1
B
OE1
GLN
334
A
OE1
GLN
334
1
Y
1
B
NE2
GLN
334
A
NE2
GLN
334
1
Y
1
B
CG
ASP
335
A
CG
ASP
335
1
Y
1
B
OD1
ASP
335
A
OD1
ASP
335
1
Y
1
B
OD2
ASP
335
A
OD2
ASP
335
1
Y
1
B
CG
LYS
338
A
CG
LYS
338
1
Y
1
B
CD
LYS
338
A
CD
LYS
338
1
Y
1
B
CE
LYS
338
A
CE
LYS
338
1
Y
1
B
NZ
LYS
338
A
NZ
LYS
338
1
Y
1
B
CG
GLN
370
A
CG
GLN
370
1
Y
1
B
CD
GLN
370
A
CD
GLN
370
1
Y
1
B
OE1
GLN
370
A
OE1
GLN
370
1
Y
1
B
NE2
GLN
370
A
NE2
GLN
370
1
Y
1
B
CG
ASP
385
A
CG
ASP
385
1
Y
1
B
OD1
ASP
385
A
OD1
ASP
385
1
Y
1
B
OD2
ASP
385
A
OD2
ASP
385
1
Y
1
B
CG
PHE
391
A
CG
PHE
391
1
Y
1
B
CD1
PHE
391
A
CD1
PHE
391
1
Y
1
B
CD2
PHE
391
A
CD2
PHE
391
1
Y
1
B
CE1
PHE
391
A
CE1
PHE
391
1
Y
1
B
CE2
PHE
391
A
CE2
PHE
391
1
Y
1
B
CZ
PHE
391
A
CZ
PHE
391
1
Y
1
B
CG
ASN
396
A
CG
ASN
396
1
Y
1
B
OD1
ASN
396
A
OD1
ASN
396
1
Y
1
B
ND2
ASN
396
A
ND2
ASN
396
1
Y
1
B
CG1
VAL
397
A
CG1
VAL
397
1
Y
1
B
CG2
VAL
397
A
CG2
VAL
397
1
Y
1
B
CG
LYS
398
A
CG
LYS
398
1
Y
1
B
CD
LYS
398
A
CD
LYS
398
1
Y
1
B
CE
LYS
398
A
CE
LYS
398
1
Y
1
B
NZ
LYS
398
A
NZ
LYS
398
1
Y
1
B
CG
PHE
401
A
CG
PHE
401
1
Y
1
B
CD1
PHE
401
A
CD1
PHE
401
1
Y
1
B
CD2
PHE
401
A
CD2
PHE
401
1
Y
1
B
CE1
PHE
401
A
CE1
PHE
401
1
Y
1
B
CE2
PHE
401
A
CE2
PHE
401
1
Y
1
B
CZ
PHE
401
A
CZ
PHE
401
1
Y
1
B
CG
HIS
402
A
CG
HIS
402
1
Y
1
B
ND1
HIS
402
A
ND1
HIS
402
1
Y
1
B
CD2
HIS
402
A
CD2
HIS
402
1
Y
1
B
CE1
HIS
402
A
CE1
HIS
402
1
Y
1
B
NE2
HIS
402
A
NE2
HIS
402
1
Y
1
B
CG
LEU
403
A
CG
LEU
403
1
Y
1
B
CD1
LEU
403
A
CD1
LEU
403
1
Y
1
B
CD2
LEU
403
A
CD2
LEU
403
1
Y
1
B
CG
LYS
414
A
CG
LYS
414
1
Y
1
B
CD
LYS
414
A
CD
LYS
414
1
Y
1
B
CE
LYS
414
A
CE
LYS
414
1
Y
1
B
NZ
LYS
414
A
NZ
LYS
414
1
Y
1
B
MET
1
A
MET
1
1
Y
1
B
GLU
2
A
GLU
2
1
Y
1
B
LEU
3
A
LEU
3
1
Y
1
B
ALA
4
A
ALA
4
1
Y
1
B
ASP
5
A
ASP
5
1
Y
1
B
VAL
6
A
VAL
6
1
Y
1
B
GLY
7
A
GLY
7
1
Y
1
B
ALA
8
A
ALA
8
1
Y
1
B
ALA
9
A
ALA
9
1
Y
1
B
ALA
10
A
ALA
10
1
Y
1
B
SER
11
A
SER
11
1
Y
1
B
SER
12
A
SER
12
1
Y
1
B
GLN
13
A
GLN
13
1
Y
1
B
GLY
14
A
GLY
14
1
Y
1
B
VAL
15
A
VAL
15
1
Y
1
B
HIS
16
A
HIS
16
1
Y
1
B
ASP
17
A
ASP
17
1
Y
1
B
GLN
18
A
GLN
18
1
Y
1
B
VAL
19
A
VAL
19
1
Y
1
B
LEU
20
A
LEU
20
1
Y
1
B
PRO
21
A
PRO
21
1
Y
1
B
THR
22
A
THR
22
1
Y
1
B
PRO
23
A
PRO
23
1
Y
1
B
ASN
24
A
ASN
24
1
Y
1
B
ALA
25
A
ALA
25
1
Y
1
B
TYR
349
A
TYR
349
1
Y
1
B
SER
350
A
SER
350
1
Y
1
B
SER
351
A
SER
351
1
Y
1
B
GLU
352
A
GLU
352
1
Y
1
B
LYS
353
A
LYS
353
1
Y
1
B
HIS
354
A
HIS
354
1
Y
1
B
TYR
355
A
TYR
355
1
Y
1
B
LEU
372
A
LEU
372
1
Y
1
B
GLY
373
A
GLY
373
1
Y
1
B
THR
374
A
THR
374
1
Y
1
B
GLY
375
A
GLY
375
1
Y
1
B
ASN
376
A
ASN
376
1
Y
1
B
ALA
415
A
ALA
415
1
Y
1
B
LEU
416
A
LEU
416
1
Y
1
B
ASN
417
A
ASN
417
1
Y
1
B
THR
418
A
THR
418
1
Y
1
B
ALA
419
A
ALA
419
1
Y
1
B
LYS
420
A
LYS
420
1
Y
1
-6.08
0.80
102.40
96.32
T
T
T
C3'
C2'
C1'
DG
DG
DG
841
841
841
N
1
4.74
0.30
108.30
113.04
T
T
T
O4'
C1'
N9
DG
DG
DG
841
841
841
N
1
-5.06
0.80
102.40
97.34
T
T
T
C3'
C2'
C1'
DT
DT
DT
847
847
847
N
1
-3.09
0.40
104.50
101.41
P
P
P
O4'
C4'
C3'
DC
DC
DC
872
872
872
N
1
2.32
0.30
108.30
110.62
P
P
P
O4'
C1'
N1
DC
DC
DC
872
872
872
N
1
2.42
0.30
108.30
110.72
P
P
P
O4'
C1'
N1
DC
DC
DC
873
873
873
N
1
B
CYS
37
19.81
83.29
1
B
GLU
49
-58.09
26.51
1
B
LYS
60
54.54
-122.00
1
B
CYS
66
179.31
144.25
1
B
VAL
75
-36.46
148.42
1
B
ALA
84
-46.08
-73.16
1
B
CYS
88
-157.45
74.25
1
B
GLN
90
-89.40
48.28
1
B
GLN
141
-66.82
14.18
1
B
ASN
234
-98.34
-68.16
1
B
PHE
308
174.98
172.06
1
B
CYS
311
-168.28
105.19
1
B
CYS
333
-53.60
-85.29
1
B
GLN
334
-32.26
-103.38
1
B
ASP
335
26.47
-86.39
1
B
ARG
337
-29.08
155.10
1
B
ILE
369
-55.32
89.49
1
B
GLN
370
178.04
108.69
1
B
VAL
379
-140.27
-20.89
1
B
PHE
391
-58.39
-4.69
1
B
CYS
411
-152.85
-158.06
0.3943
0.0000
-0.0000
0.3943
-0.0000
-0.7886
0.2809
0.2386
0.2452
0.2419
2.900
32.093
1007
13253
12590
8.00
97.54
0.40
RANDOM
1
1.34
MOLECULAR REPLACEMENT
29.38
1.06
1.30
PDB ENTRY 3GV5
ML
FLAT BULK SOLVENT MODEL
51.869
0.318
2.900
32.093
28
3233
31
326
2848
0.007
3289
1.117
4530
19.129
1235
0.060
535
0.003
525
0.3890
0.3389
3.0530
150
1610
99.00
0.3335
0.3039
3.2442
141
1629
98.00
0.3340
0.2726
3.4944
155
1621
98.00
0.3296
0.2580
3.8455
129
1640
98.00
0.2290
0.2229
4.4007
143
1643
97.00
0.2539
0.2088
5.5398
136
1677
97.00
0.2585
0.2196
32.0950
153
1763
95.00
2.9
32.093
4EYH
13253
12590
1
1
1
97.2
data collection
ADSC
Quantum
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.6.4_486)
data reduction
HKL-2000
data scaling
HKL-2000
Human DNA polymerase iota incorporating dCTP opposite N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
B
CYS
37
A
CYS
37
HELX_P
B
ASN
47
A
ASN
47
1
1
11
B
VAL
81
A
VAL
81
HELX_P
B
CYS
88
A
CYS
88
1
2
8
B
LEU
99
A
LEU
99
HELX_P
B
GLU
115
A
GLU
115
1
3
17
B
LEU
132
A
LEU
132
HELX_P
B
GLN
141
A
GLN
141
1
4
10
B
ASP
146
A
ASP
146
HELX_P
B
VAL
151
A
VAL
151
5
5
6
B
ASN
159
A
ASN
159
HELX_P
B
GLN
161
A
GLN
161
5
6
3
B
ASP
167
A
ASP
167
HELX_P
B
GLY
192
A
GLY
192
1
7
26
B
ASN
202
A
ASN
202
HELX_P
B
SER
210
A
SER
210
1
8
9
B
LEU
222
A
LEU
222
HELX_P
B
GLU
224
A
GLU
224
5
9
3
B
SER
225
A
SER
225
HELX_P
B
SER
232
A
SER
232
1
10
8
B
HIS
235
A
HIS
235
HELX_P
B
ILE
239
A
ILE
239
5
11
5
B
GLY
243
A
GLY
243
HELX_P
B
LEU
253
A
LEU
253
1
12
11
B
SER
257
A
SER
257
HELX_P
B
PHE
264
A
PHE
264
1
13
8
B
SER
265
A
SER
265
HELX_P
B
GLY
274
A
GLY
274
1
14
10
B
GLY
274
A
GLY
274
HELX_P
B
LEU
284
A
LEU
284
1
15
11
B
SER
285
A
SER
285
HELX_P
B
GLY
287
A
GLY
287
5
16
3
B
SER
313
A
SER
313
HELX_P
B
GLN
334
A
GLN
334
1
17
22
B
VAL
379
A
VAL
379
HELX_P
B
MET
394
A
MET
394
1
18
16
metalc
2.762
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
502
E
MG
MG
1_555
metalc
2.959
B
ASP
34
A
OD1
ASP
34
1_555
B
MG
504
G
MG
MG
1_555
metalc
2.923
B
LEU
35
A
O
LEU
35
1_555
B
MG
502
E
MG
MG
1_555
metalc
2.626
B
GLU
127
A
OE2
GLU
127
1_555
B
MG
504
G
MG
MG
1_555
metalc
2.681
B
LYS
237
A
O
LYS
237
1_555
B
MG
503
F
MG
MG
1_555
metalc
2.894
B
ILE
239
A
O
ILE
239
1_555
B
MG
503
F
MG
MG
1_555
metalc
2.693
B
ILE
242
A
O
ILE
242
1_555
B
MG
503
F
MG
MG
1_555
metalc
2.522
B
DCP
501
D
O3G
DCP
1_555
B
MG
502
E
MG
MG
1_555
metalc
2.997
B
DCP
501
D
O2B
DCP
1_555
B
MG
502
E
MG
MG
1_555
metalc
2.781
B
DCP
501
D
O1A
DCP
1_555
B
MG
504
G
MG
MG
1_555
metalc
2.846
B
MG
502
E
MG
MG
1_555
B
HOH
601
H
O
HOH
1_555
metalc
2.006
B
MG
503
F
MG
MG
1_555
B
HOH
624
H
O
HOH
1_555
metalc
2.613
B
MG
503
F
MG
MG
1_555
P
DC
872
C
OP1
DC
6
1_555
metalc
2.779
B
MG
503
F
MG
MG
1_555
P
HOH
901
J
O
HOH
1_555
hydrog
WATSON-CRICK
T
DG
841
B
N1
DG
2
1_555
P
DC
873
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
T
DG
841
B
N2
DG
2
1_555
P
DC
873
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
T
DG
841
B
O6
DG
2
1_555
P
DC
873
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
T
DG
842
B
N1
DG
3
1_555
P
DC
872
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
T
DG
842
B
N2
DG
3
1_555
P
DC
872
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
T
DG
842
B
O6
DG
3
1_555
P
DC
872
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
T
DG
843
B
N1
DG
4
1_555
P
DC
871
C
N3
DC
5
1_555
hydrog
WATSON-CRICK
T
DG
843
B
N2
DG
4
1_555
P
DC
871
C
O2
DC
5
1_555
hydrog
WATSON-CRICK
T
DG
843
B
O6
DG
4
1_555
P
DC
871
C
N4
DC
5
1_555
hydrog
WATSON-CRICK
T
DT
844
B
N3
DT
5
1_555
P
DA
870
C
N1
DA
4
1_555
hydrog
WATSON-CRICK
T
DT
844
B
O4
DT
5
1_555
P
DA
870
C
N6
DA
4
1_555
hydrog
WATSON-CRICK
T
DC
845
B
N3
DC
6
1_555
P
DG
869
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
845
B
N4
DC
6
1_555
P
DG
869
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
845
B
O2
DC
6
1_555
P
DG
869
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
846
B
N3
DC
7
1_555
P
DG
868
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
846
B
N4
DC
7
1_555
P
DG
868
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
846
B
O2
DC
7
1_555
P
DG
868
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
T
DT
847
B
N3
DT
8
1_555
P
DA
867
C
N1
DA
1
1_555
hydrog
WATSON-CRICK
T
DT
847
B
O4
DT
8
1_555
P
DA
867
C
N6
DA
1
1_555
TRANSFERASE/DNA
DNA polymerase, TRANSFERASE-DNA complex
B
LYS
214
A
LYS
214
1
B
PRO
215
A
PRO
215
-8.51
POLI_HUMAN
UNP
1
26
Q9UNA4
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
4EYH
PDB
2
4EYH
GGGGTCCT
4EYH
PDB
3
4EYH
AGGACCC
26
445
4EYH
1
420
Q9UNA4
B
1
1
420
840
847
4EYH
840
847
4EYH
T
2
1
8
867
873
4EYH
867
873
4EYH
P
3
1
7
6
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
B
VAL
120
A
VAL
120
B
LEU
123
A
LEU
123
B
GLU
127
A
GLU
127
B
ASP
131
A
ASP
131
B
ILE
30
A
ILE
30
B
LEU
35
A
LEU
35
B
GLY
195
A
GLY
195
B
ALA
200
A
ALA
200
B
GLN
218
A
GLN
218
B
VAL
220
A
VAL
220
B
HIS
156
A
HIS
156
B
VAL
157
A
VAL
157
B
MET
79
A
MET
79
B
ASN
80
A
ASN
80
B
LEU
62
A
LEU
62
B
CYS
66
A
CYS
66
B
LEU
55
A
LEU
55
B
GLN
59
A
GLN
59
B
VAL
92
A
VAL
92
B
ASN
95
A
ASN
95
B
PHE
302
A
PHE
302
B
SER
307
A
SER
307
B
LEU
405
A
LEU
405
B
LEU
413
A
LEU
413
B
PRO
339
A
PRO
339
B
ARG
347
A
ARG
347
B
SER
359
A
SER
359
B
PRO
363
A
PRO
363
BINDING SITE FOR RESIDUE DCP B 501
B
DCP
501
Software
16
BINDING SITE FOR RESIDUE MG B 502
B
MG
502
Software
4
BINDING SITE FOR RESIDUE MG B 503
B
MG
503
Software
6
BINDING SITE FOR RESIDUE MG B 504
B
MG
504
Software
4
B
LEU
35
A
LEU
35
16
1_555
B
CYS
37
A
CYS
37
16
1_555
B
PHE
38
A
PHE
38
16
1_555
B
TYR
39
A
TYR
39
16
1_555
B
VAL
64
A
VAL
64
16
1_555
B
THR
65
A
THR
65
16
1_555
B
TYR
68
A
TYR
68
16
1_555
B
ARG
71
A
ARG
71
16
1_555
B
LYS
77
A
LYS
77
16
1_555
B
ASP
126
A
ASP
126
16
1_555
B
LYS
214
A
LYS
214
16
1_555
B
MG
502
E
MG
16
1_555
B
MG
504
G
MG
16
1_555
P
DC
873
C
DC
7
16
1_555
T
DG8
840
B
DG8
1
16
1_555
T
DG
841
B
DG
2
16
1_555
B
ASP
34
A
ASP
34
4
1_555
B
LEU
35
A
LEU
35
4
1_555
B
DCP
501
D
DCP
4
1_555
B
HOH
601
H
HOH
4
1_555
B
LYS
237
A
LYS
237
6
1_555
B
ILE
239
A
ILE
239
6
1_555
B
ILE
242
A
ILE
242
6
1_555
B
HOH
624
H
HOH
6
1_555
P
DC
872
C
DC
6
6
1_555
P
HOH
901
J
HOH
6
1_555
B
ASP
34
A
ASP
34
4
1_555
B
GLU
127
A
GLU
127
4
1_555
B
DCP
501
D
DCP
4
1_555
P
DC
873
C
DC
7
4
1_555
179
P 65 2 2