0.022028 0.000000 0.000000 0.000000 0.022028 0.000000 0.000000 0.000000 0.009609 0.00000 0.00000 0.00000 Liu, Z. Yedidi, R.S. Wang, Y. Brunzelle, J.S. Kovari, I.A. Kovari, L.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 45.398 45.398 104.071 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C37 H48 N6 O5 S2 720.944 RITONAVIR A-84538 peptide-like C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H Y 290 N C Y 291 N C Y 292 N S Y 293 N C Y 294 N N N 295 N C N 296 N O N 297 N C N 298 N O N 299 N N N 300 S C N 301 S C N 302 N C N 303 S C N 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C N 319 N N N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C N 325 N C N 326 N C N 327 N C N 328 N N N 329 N C N 330 N O Y 331 N C Y 332 N C Y 333 N S Y 334 N C Y 335 N N N 336 N C N 337 N C N 338 N C N 339 N C N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 R C N 393 N O N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N N N 406 S C N 407 N C N 408 N O N 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N N Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C N 461 N C N 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N sing N 279 N sing Y 280 N sing N 281 N sing Y 282 N sing Y 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing Y 318 N doub Y 319 N sing Y 320 N sing N 321 N sing Y 322 N doub N 323 N sing Y 324 N sing N 325 N sing Y 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing Y 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing Y 359 N doub Y 360 N sing Y 361 N sing N 362 N sing Y 363 N sing Y 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub Y 410 N sing Y 411 N sing N 412 N sing Y 413 N sing Y 414 N doub N 415 N sing Y 416 N doub N 417 N sing Y 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing Y 433 N doub Y 434 N sing Y 435 N sing N 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing US Biochem.Biophys.Res.Commun. BBRCA9 0146 0006-291X 431 232 238 10.1016/j.bbrc.2012.12.127 23313846 Insights into the mechanism of drug resistance: X-ray structure analysis of multi-drug resistant HIV-1 protease ritonavir complex. 2013 10.2210/pdb4eyr/pdb pdb_00004eyr LIGAND RIT HAS LOW CORRELATION AND HIGH REAL SPACE R VALUE. 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 CCD 2008-08-21 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 1.0 1.0 21-ID-D APS 1.0 SYNCHROTRON APS BEAMLINE 21-ID-D 10769.635 HIV-1 PROTEASE UNP residues 1-99 2 man polymer 720.944 RITONAVIR 1 syn non-polymer 18.015 water 247 nat water no no PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample pol 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 2.49 50.59 VAPOR DIFFUSION, HANGING DROP 5.8 0.8M NaCl, 0.1 M MES, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Data collection Database references Derived calculations 1 0 2013-01-30 1 1 2013-02-27 1 2 2018-06-27 1 3 2024-02-28 _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-05-01 REL REL RIT RITONAVIR HOH water Inhibitor RITONAVIR Peptide-like RIT 301 2 RIT RIT 301 B HOH 4 3 HOH HOH 101 A HOH 5 3 HOH HOH 102 A HOH 7 3 HOH HOH 103 A HOH 9 3 HOH HOH 104 A HOH 10 3 HOH HOH 105 A HOH 11 3 HOH HOH 106 A HOH 12 3 HOH HOH 107 A HOH 14 3 HOH HOH 108 A HOH 18 3 HOH HOH 109 A HOH 19 3 HOH HOH 110 A HOH 23 3 HOH HOH 111 A HOH 25 3 HOH HOH 112 A HOH 26 3 HOH HOH 113 A HOH 27 3 HOH HOH 114 A HOH 28 3 HOH HOH 115 A HOH 29 3 HOH HOH 116 A HOH 30 3 HOH HOH 117 A HOH 34 3 HOH HOH 118 A HOH 35 3 HOH HOH 119 A HOH 38 3 HOH HOH 120 A HOH 39 3 HOH HOH 121 A HOH 40 3 HOH HOH 122 A HOH 44 3 HOH HOH 123 A HOH 51 3 HOH HOH 124 A HOH 52 3 HOH HOH 125 A HOH 55 3 HOH HOH 126 A HOH 56 3 HOH HOH 127 A HOH 61 3 HOH HOH 128 A HOH 64 3 HOH HOH 129 A HOH 67 3 HOH HOH 130 A HOH 68 3 HOH HOH 131 A HOH 71 3 HOH HOH 132 A HOH 72 3 HOH HOH 133 A HOH 73 3 HOH HOH 134 A HOH 74 3 HOH HOH 135 A HOH 75 3 HOH HOH 136 A HOH 78 3 HOH HOH 137 A HOH 80 3 HOH HOH 138 A HOH 85 3 HOH HOH 139 A HOH 86 3 HOH HOH 140 A HOH 88 3 HOH HOH 141 A HOH 89 3 HOH HOH 142 A HOH 91 3 HOH HOH 143 A HOH 92 3 HOH HOH 144 A HOH 93 3 HOH HOH 145 A HOH 94 3 HOH HOH 146 A HOH 95 3 HOH HOH 147 A HOH 96 3 HOH HOH 148 A HOH 98 3 HOH HOH 149 A HOH 101 3 HOH HOH 150 A HOH 102 3 HOH HOH 151 A HOH 104 3 HOH HOH 152 A HOH 105 3 HOH HOH 153 A HOH 106 3 HOH HOH 154 A HOH 107 3 HOH HOH 155 A HOH 113 3 HOH HOH 156 A HOH 115 3 HOH HOH 157 A HOH 117 3 HOH HOH 158 A HOH 119 3 HOH HOH 159 A HOH 120 3 HOH HOH 160 A HOH 123 3 HOH HOH 161 A HOH 124 3 HOH HOH 162 A HOH 125 3 HOH HOH 163 A HOH 126 3 HOH HOH 164 A HOH 128 3 HOH HOH 165 A HOH 132 3 HOH HOH 166 A HOH 134 3 HOH HOH 167 A HOH 135 3 HOH HOH 168 A HOH 136 3 HOH HOH 169 A HOH 140 3 HOH HOH 170 A HOH 141 3 HOH HOH 171 A HOH 144 3 HOH HOH 172 A HOH 145 3 HOH HOH 173 A HOH 147 3 HOH HOH 174 A HOH 148 3 HOH HOH 175 A HOH 150 3 HOH HOH 176 A HOH 152 3 HOH HOH 177 A HOH 155 3 HOH HOH 178 A HOH 156 3 HOH HOH 179 A HOH 157 3 HOH HOH 180 A HOH 158 3 HOH HOH 181 A HOH 160 3 HOH HOH 182 A HOH 162 3 HOH HOH 183 A HOH 163 3 HOH HOH 184 A HOH 172 3 HOH HOH 185 A HOH 173 3 HOH HOH 186 A HOH 175 3 HOH HOH 187 A HOH 176 3 HOH HOH 188 A HOH 177 3 HOH HOH 189 A HOH 178 3 HOH HOH 190 A HOH 181 3 HOH HOH 191 A HOH 182 3 HOH HOH 192 A HOH 185 3 HOH HOH 193 A HOH 186 3 HOH HOH 194 A HOH 189 3 HOH HOH 195 A HOH 190 3 HOH HOH 196 A HOH 195 3 HOH HOH 197 A HOH 196 3 HOH HOH 198 A HOH 197 3 HOH HOH 199 A HOH 199 3 HOH HOH 200 A HOH 204 3 HOH HOH 201 A HOH 207 3 HOH HOH 202 A HOH 208 3 HOH HOH 203 A HOH 209 3 HOH HOH 204 A HOH 210 3 HOH HOH 205 A HOH 212 3 HOH HOH 206 A HOH 215 3 HOH HOH 207 A HOH 216 3 HOH HOH 208 A HOH 218 3 HOH HOH 209 A HOH 219 3 HOH HOH 210 A HOH 221 3 HOH HOH 211 A HOH 222 3 HOH HOH 212 A HOH 229 3 HOH HOH 213 A HOH 233 3 HOH HOH 214 A HOH 236 3 HOH HOH 215 A HOH 240 3 HOH HOH 216 A HOH 241 3 HOH HOH 217 A HOH 243 3 HOH HOH 218 A HOH 244 3 HOH HOH 219 A HOH 246 3 HOH HOH 220 A HOH 110 3 HOH HOH 401 B HOH 111 3 HOH HOH 402 B HOH 1 3 HOH HOH 403 B HOH 2 3 HOH HOH 404 B HOH 3 3 HOH HOH 405 B HOH 6 3 HOH HOH 406 B HOH 8 3 HOH HOH 407 B HOH 13 3 HOH HOH 408 B HOH 15 3 HOH HOH 409 B HOH 16 3 HOH HOH 410 B HOH 17 3 HOH HOH 411 B HOH 20 3 HOH HOH 412 B HOH 21 3 HOH HOH 413 B HOH 22 3 HOH HOH 414 B HOH 24 3 HOH HOH 415 B HOH 31 3 HOH HOH 416 B HOH 32 3 HOH HOH 417 B HOH 33 3 HOH HOH 418 B HOH 36 3 HOH HOH 419 B HOH 37 3 HOH HOH 420 B HOH 41 3 HOH HOH 421 B HOH 42 3 HOH HOH 422 B HOH 43 3 HOH HOH 423 B HOH 45 3 HOH HOH 424 B HOH 46 3 HOH HOH 425 B HOH 47 3 HOH HOH 426 B HOH 48 3 HOH HOH 427 B HOH 49 3 HOH HOH 428 B HOH 50 3 HOH HOH 429 B HOH 53 3 HOH HOH 430 B HOH 54 3 HOH HOH 431 B HOH 57 3 HOH HOH 432 B HOH 58 3 HOH HOH 433 B HOH 59 3 HOH HOH 434 B HOH 60 3 HOH HOH 435 B HOH 62 3 HOH HOH 436 B HOH 63 3 HOH HOH 437 B HOH 65 3 HOH HOH 438 B HOH 66 3 HOH HOH 439 B HOH 69 3 HOH HOH 440 B HOH 70 3 HOH HOH 441 B HOH 76 3 HOH HOH 442 B HOH 77 3 HOH HOH 443 B HOH 79 3 HOH HOH 444 B HOH 81 3 HOH HOH 445 B HOH 82 3 HOH HOH 446 B HOH 83 3 HOH HOH 447 B HOH 84 3 HOH HOH 448 B HOH 87 3 HOH HOH 449 B HOH 90 3 HOH HOH 450 B HOH 97 3 HOH HOH 451 B HOH 99 3 HOH HOH 452 B HOH 100 3 HOH HOH 453 B HOH 103 3 HOH HOH 454 B HOH 108 3 HOH HOH 455 B HOH 109 3 HOH HOH 456 B HOH 112 3 HOH HOH 457 B HOH 114 3 HOH HOH 458 B HOH 116 3 HOH HOH 459 B HOH 118 3 HOH HOH 460 B HOH 121 3 HOH HOH 461 B HOH 122 3 HOH HOH 462 B HOH 127 3 HOH HOH 463 B HOH 129 3 HOH HOH 464 B HOH 130 3 HOH HOH 465 B HOH 131 3 HOH HOH 466 B HOH 133 3 HOH HOH 467 B HOH 137 3 HOH HOH 468 B HOH 138 3 HOH HOH 469 B HOH 139 3 HOH HOH 470 B HOH 142 3 HOH HOH 471 B HOH 143 3 HOH HOH 472 B HOH 146 3 HOH HOH 473 B HOH 149 3 HOH HOH 474 B HOH 151 3 HOH HOH 475 B HOH 153 3 HOH HOH 476 B HOH 154 3 HOH HOH 477 B HOH 159 3 HOH HOH 478 B HOH 161 3 HOH HOH 479 B HOH 164 3 HOH HOH 480 B HOH 165 3 HOH HOH 481 B HOH 166 3 HOH HOH 482 B HOH 167 3 HOH HOH 483 B HOH 168 3 HOH HOH 484 B HOH 169 3 HOH HOH 485 B HOH 170 3 HOH HOH 486 B HOH 171 3 HOH HOH 487 B HOH 174 3 HOH HOH 488 B HOH 179 3 HOH HOH 489 B HOH 180 3 HOH HOH 490 B HOH 183 3 HOH HOH 491 B HOH 184 3 HOH HOH 492 B HOH 187 3 HOH HOH 493 B HOH 188 3 HOH HOH 494 B HOH 191 3 HOH HOH 495 B HOH 192 3 HOH HOH 496 B HOH 193 3 HOH HOH 497 B HOH 194 3 HOH HOH 498 B HOH 198 3 HOH HOH 499 B HOH 200 3 HOH HOH 500 B HOH 201 3 HOH HOH 501 B HOH 202 3 HOH HOH 502 B HOH 203 3 HOH HOH 503 B HOH 205 3 HOH HOH 504 B HOH 206 3 HOH HOH 505 B HOH 211 3 HOH HOH 506 B HOH 213 3 HOH HOH 507 B HOH 214 3 HOH HOH 508 B HOH 217 3 HOH HOH 509 B HOH 220 3 HOH HOH 510 B HOH 223 3 HOH HOH 511 B HOH 224 3 HOH HOH 512 B HOH 225 3 HOH HOH 513 B HOH 226 3 HOH HOH 514 B HOH 227 3 HOH HOH 515 B HOH 228 3 HOH HOH 516 B HOH 230 3 HOH HOH 517 B HOH 231 3 HOH HOH 518 B HOH 232 3 HOH HOH 519 B HOH 234 3 HOH HOH 520 B HOH 235 3 HOH HOH 521 B HOH 237 3 HOH HOH 522 B HOH 238 3 HOH HOH 523 B HOH 239 3 HOH HOH 524 B HOH 242 3 HOH HOH 525 B HOH 245 3 HOH HOH 526 B HOH 247 3 HOH HOH 527 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A ILE 10 n 10 ILE 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASN 25 n 25 ASN 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A VAL 36 n 36 VAL 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A LEU 46 n 46 LEU 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A VAL 54 n 54 VAL 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A VAL 62 n 62 VAL 62 A PRO 63 n 63 PRO 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A THR 82 n 82 THR 82 A ASN 83 n 83 ASN 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A MET 90 n 90 MET 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B GLN 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B ILE 10 n 10 ILE 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASN 25 n 25 ASN 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B VAL 36 n 36 VAL 36 B ASN 37 n 37 ASN 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B LEU 46 n 46 LEU 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B VAL 54 n 54 VAL 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B VAL 62 n 62 VAL 62 B PRO 63 n 63 PRO 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B VAL 71 n 71 VAL 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B THR 82 n 82 THR 82 B ASN 83 n 83 ASN 83 B VAL 84 n 84 VAL 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B MET 90 n 90 MET 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 3030 -18 10740 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O THR 96 B O THR 96 A N ASN 98 A N ASN 98 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 64 A N ILE 64 A O VAL 71 A O VAL 71 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O VAL 84 A O VAL 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O ALA 22 A O ALA 22 A N VAL 11 A N VAL 11 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 43 B N LYS 43 B O GLN 58 B O GLN 58 B N ILE 64 B N ILE 64 B O VAL 71 B O VAL 71 B O LEU 76 B O LEU 76 B N LEU 33 B N LEU 33 B N VAL 32 B N VAL 32 B O VAL 84 B O VAL 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O ALA 22 B O ALA 22 B N VAL 11 B N VAL 11 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 B A C80 O RIT HOH 301 107 2.19 27.028 -0.03 0.00 0.00 -0.03 0.00 0.06 0.958 0.940 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.22580 0.19147 0.19327 1.80 973 18185 5.1 98.28 2.820 0.089 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.144 0.131 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.80 247 1811 50 0 1514 0.016 0.022 1595 1.636 2.012 2169 5.880 5.000 196 41.017 25.000 56 11.754 15.000 272 10.760 15.000 8 0.108 0.200 258 0.007 0.020 1163 0.243 0.200 721 0.315 0.200 1078 0.166 0.200 162 0.194 0.200 47 0.173 0.200 18 1.165 1.500 1014 1.894 2.000 1600 2.589 3.000 661 4.198 4.500 569 0.398 0.256 1.846 53 1378 20 99.79 1.65 19.927 4EYR 22513 1 phasing MOLREP refinement REFMAC 5.2.0019 data scaling SCALA Crystal structure of multidrug-resistant clinical isolate 769 HIV-1 protease in complex with ritonavir 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A GLY 94 A GLY 94 1 1 9 B GLY 86 B GLY 86 HELX_P B GLY 94 B GLY 94 1 2 9 HYDROLASE/HYDROLASE INHIBITOR Protease, HYDROLASE-HYDROLASE INHIBITOR complex Q000H7_9HIV1 UNP 1 1 Q000H7 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDINLPGRWKPKMIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF 1 99 4EYR 1 99 Q000H7 A 1 1 99 1 99 4EYR 1 99 Q000H7 B 1 1 99 1 ASP variant ASN 25 4EYR A Q000H7 UNP 25 25 1 ASP variant GLU 35 4EYR A Q000H7 UNP 35 35 1 ILE variant VAL 36 4EYR A Q000H7 UNP 36 36 1 MET variant LEU 46 4EYR A Q000H7 UNP 46 46 2 ASP variant ASN 25 4EYR B Q000H7 UNP 25 25 2 ASP variant GLU 35 4EYR B Q000H7 UNP 35 35 2 ILE variant VAL 36 4EYR B Q000H7 UNP 36 36 2 MET variant LEU 46 4EYR B Q000H7 UNP 46 46 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A VAL 84 A VAL 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A ILE 10 A ILE 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B VAL 84 B VAL 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B ILE 10 B ILE 10 B ILE 15 B ILE 15 B GLY 52 B GLY 52 B ILE 66 B ILE 66 BINDING SITE FOR RESIDUE RIT B 301 B RIT 301 Software 27 A LEU 23 A LEU 23 27 1_555 A ASN 25 A ASN 25 27 1_555 A GLY 27 A GLY 27 27 1_555 A ALA 28 A ALA 28 27 1_555 A ASP 29 A ASP 29 27 1_555 A ASP 30 A ASP 30 27 1_555 A ARG 41 A ARG 41 27 3_545 A ILE 50 A ILE 50 27 1_555 A THR 82 A THR 82 27 1_555 A HOH 107 D HOH 27 1_555 A HOH 176 D HOH 27 1_555 A HOH 180 D HOH 27 1_555 A HOH 181 D HOH 27 1_555 B ARG 8 B ARG 8 27 1_555 B ASN 25 B ASN 25 27 1_555 B GLY 27 B GLY 27 27 1_555 B ALA 28 B ALA 28 27 1_555 B ASP 29 B ASP 29 27 1_555 B ASP 30 B ASP 30 27 1_555 B THR 82 B THR 82 27 1_555 B HOH 438 E HOH 27 1_555 B HOH 451 E HOH 27 1_555 B HOH 460 E HOH 27 1_555 B HOH 483 E HOH 27 1_555 B HOH 487 E HOH 27 1_555 B HOH 502 E HOH 27 1_555 B HOH 507 E HOH 27 1_555 76 P 41