0.010589 0.000000 0.000000 0.000000 0.008554 0.000000 0.000000 0.000000 0.027031 0.00000 0.00000 0.00000 Zahn, M. Straeter, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 94.437 116.905 36.994 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N S N 291 N O N 292 N O N 293 N O N 294 N O N 295 N N N 296 S C N 297 N C N 298 N O N 299 R C N 300 N O N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C Y 322 N C N 323 N O N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C N 341 N C N 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N doub N 313 N sing Y 314 N doub N 315 N sing Y 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing To be Published 0353 Structural studies of DnaK in complex with proline rich antimicrobial peptides reveal two different peptide binding modes 10.2210/pdb4ezs/pdb pdb_00004ezs 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-03-04 MARMOSAIC 225 mm CCD Si - 111 SINGLE WAVELENGTH M x-ray 1 0.918 1.0 14.1 BESSY 0.918 SYNCHROTRON BESSY BEAMLINE 14.1 23820.777 Chaperone protein DnaK UNP residues 389-607 1 man polymer 963.111 Metchnikowin UNP residues 46-52 1 syn polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 85 nat water HSP70, Heat shock 70 kDa protein, Heat shock protein 70 no no VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA A polypeptide(L) no no PRPGPIYY PRPGPIYY B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n K12 sample b0014, dnaK, groP, grpF, JW0013, seg 83333 Escherichia coli 562 Escherichia coli 1 2.06 40.29 VAPOR DIFFUSION, HANGING DROP 8.0 3.2 M ammonium sulfate 0.1 M tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K 292 software chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Refinement description Data collection Database references Derived calculations 1 0 2013-04-24 1 1 2017-11-15 1 2 2024-02-28 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-05-03 REL REL SO4 SULFATE ION HOH water This sequence occurs naturally in Drosophila melanogaster. C-terminus is amidated. 7227 Fruit fly Drosophila melanogaster sample SO4 1 3 SO4 SO4 701 A HOH 1 4 HOH HOH 801 A HOH 2 4 HOH HOH 802 A HOH 3 4 HOH HOH 803 A HOH 4 4 HOH HOH 804 A HOH 5 4 HOH HOH 805 A HOH 6 4 HOH HOH 806 A HOH 7 4 HOH HOH 807 A HOH 8 4 HOH HOH 808 A HOH 9 4 HOH HOH 809 A HOH 10 4 HOH HOH 810 A HOH 11 4 HOH HOH 811 A HOH 12 4 HOH HOH 812 A HOH 13 4 HOH HOH 813 A HOH 14 4 HOH HOH 814 A HOH 15 4 HOH HOH 815 A HOH 16 4 HOH HOH 816 A HOH 17 4 HOH HOH 817 A HOH 18 4 HOH HOH 818 A HOH 19 4 HOH HOH 819 A HOH 20 4 HOH HOH 820 A HOH 21 4 HOH HOH 821 A HOH 22 4 HOH HOH 822 A HOH 23 4 HOH HOH 823 A HOH 24 4 HOH HOH 824 A HOH 26 4 HOH HOH 825 A HOH 27 4 HOH HOH 826 A HOH 28 4 HOH HOH 827 A HOH 29 4 HOH HOH 828 A HOH 30 4 HOH HOH 829 A HOH 31 4 HOH HOH 830 A HOH 32 4 HOH HOH 831 A HOH 33 4 HOH HOH 832 A HOH 34 4 HOH HOH 833 A HOH 35 4 HOH HOH 834 A HOH 36 4 HOH HOH 835 A HOH 37 4 HOH HOH 836 A HOH 38 4 HOH HOH 837 A HOH 39 4 HOH HOH 838 A HOH 40 4 HOH HOH 839 A HOH 41 4 HOH HOH 840 A HOH 42 4 HOH HOH 841 A HOH 43 4 HOH HOH 842 A HOH 44 4 HOH HOH 843 A HOH 45 4 HOH HOH 844 A HOH 46 4 HOH HOH 845 A HOH 47 4 HOH HOH 846 A HOH 48 4 HOH HOH 847 A HOH 49 4 HOH HOH 848 A HOH 50 4 HOH HOH 849 A HOH 51 4 HOH HOH 850 A HOH 52 4 HOH HOH 851 A HOH 53 4 HOH HOH 852 A HOH 54 4 HOH HOH 853 A HOH 55 4 HOH HOH 854 A HOH 56 4 HOH HOH 855 A HOH 57 4 HOH HOH 856 A HOH 58 4 HOH HOH 857 A HOH 59 4 HOH HOH 858 A HOH 60 4 HOH HOH 859 A HOH 61 4 HOH HOH 860 A HOH 62 4 HOH HOH 861 A HOH 63 4 HOH HOH 862 A HOH 64 4 HOH HOH 863 A HOH 65 4 HOH HOH 864 A HOH 66 4 HOH HOH 865 A HOH 67 4 HOH HOH 866 A HOH 68 4 HOH HOH 867 A HOH 69 4 HOH HOH 868 A HOH 70 4 HOH HOH 869 A HOH 71 4 HOH HOH 870 A HOH 72 4 HOH HOH 871 A HOH 73 4 HOH HOH 872 A HOH 74 4 HOH HOH 873 A HOH 75 4 HOH HOH 874 A HOH 76 4 HOH HOH 875 A HOH 77 4 HOH HOH 876 A HOH 78 4 HOH HOH 877 A HOH 79 4 HOH HOH 878 A HOH 80 4 HOH HOH 879 A HOH 81 4 HOH HOH 880 A HOH 82 4 HOH HOH 881 A HOH 83 4 HOH HOH 882 A HOH 84 4 HOH HOH 883 A HOH 85 4 HOH HOH 884 A HOH 25 4 HOH HOH 101 B VAL 389 n 1 VAL 389 A LEU 390 n 2 LEU 390 A LEU 391 n 3 LEU 391 A LEU 392 n 4 LEU 392 A ASP 393 n 5 ASP 393 A VAL 394 n 6 VAL 394 A THR 395 n 7 THR 395 A PRO 396 n 8 PRO 396 A LEU 397 n 9 LEU 397 A SER 398 n 10 SER 398 A LEU 399 n 11 LEU 399 A GLY 400 n 12 GLY 400 A ILE 401 n 13 ILE 401 A GLU 402 n 14 GLU 402 A THR 403 n 15 THR 403 A MET 404 n 16 MET 404 A GLY 405 n 17 GLY 405 A GLY 406 n 18 GLY 406 A VAL 407 n 19 VAL 407 A MET 408 n 20 MET 408 A THR 409 n 21 THR 409 A THR 410 n 22 THR 410 A LEU 411 n 23 LEU 411 A ILE 412 n 24 ILE 412 A ALA 413 n 25 ALA 413 A LYS 414 n 26 LYS 414 A ASN 415 n 27 ASN 415 A THR 416 n 28 THR 416 A THR 417 n 29 THR 417 A ILE 418 n 30 ILE 418 A PRO 419 n 31 PRO 419 A THR 420 n 32 THR 420 A LYS 421 n 33 LYS 421 A HIS 422 n 34 HIS 422 A SER 423 n 35 SER 423 A GLN 424 n 36 GLN 424 A VAL 425 n 37 VAL 425 A PHE 426 n 38 PHE 426 A SER 427 n 39 SER 427 A THR 428 n 40 THR 428 A ALA 429 n 41 ALA 429 A GLU 430 n 42 GLU 430 A ASP 431 n 43 ASP 431 A ASN 432 n 44 ASN 432 A GLN 433 n 45 GLN 433 A SER 434 n 46 SER 434 A ALA 435 n 47 ALA 435 A VAL 436 n 48 VAL 436 A THR 437 n 49 THR 437 A ILE 438 n 50 ILE 438 A HIS 439 n 51 HIS 439 A VAL 440 n 52 VAL 440 A LEU 441 n 53 LEU 441 A GLN 442 n 54 GLN 442 A GLY 443 n 55 GLY 443 A GLU 444 n 56 GLU 444 A ARG 445 n 57 ARG 445 A LYS 446 n 58 LYS 446 A ARG 447 n 59 ARG 447 A ALA 448 n 60 ALA 448 A ALA 449 n 61 ALA 449 A ASP 450 n 62 ASP 450 A ASN 451 n 63 ASN 451 A LYS 452 n 64 LYS 452 A SER 453 n 65 SER 453 A LEU 454 n 66 LEU 454 A GLY 455 n 67 GLY 455 A GLN 456 n 68 GLN 456 A PHE 457 n 69 PHE 457 A ASN 458 n 70 ASN 458 A LEU 459 n 71 LEU 459 A ASP 460 n 72 ASP 460 A GLY 461 n 73 GLY 461 A ILE 462 n 74 ILE 462 A ASN 463 n 75 ASN 463 A PRO 464 n 76 PRO 464 A ALA 465 n 77 ALA 465 A PRO 466 n 78 PRO 466 A ARG 467 n 79 ARG 467 A GLY 468 n 80 GLY 468 A MET 469 n 81 MET 469 A PRO 470 n 82 PRO 470 A GLN 471 n 83 GLN 471 A ILE 472 n 84 ILE 472 A GLU 473 n 85 GLU 473 A VAL 474 n 86 VAL 474 A THR 475 n 87 THR 475 A PHE 476 n 88 PHE 476 A ASP 477 n 89 ASP 477 A ILE 478 n 90 ILE 478 A ASP 479 n 91 ASP 479 A ALA 480 n 92 ALA 480 A ASP 481 n 93 ASP 481 A GLY 482 n 94 GLY 482 A ILE 483 n 95 ILE 483 A LEU 484 n 96 LEU 484 A HIS 485 n 97 HIS 485 A VAL 486 n 98 VAL 486 A SER 487 n 99 SER 487 A ALA 488 n 100 ALA 488 A LYS 489 n 101 LYS 489 A ASP 490 n 102 ASP 490 A LYS 491 n 103 LYS 491 A ASN 492 n 104 ASN 492 A SER 493 n 105 SER 493 A GLY 494 n 106 GLY 494 A LYS 495 n 107 LYS 495 A GLU 496 n 108 GLU 496 A GLN 497 n 109 GLN 497 A LYS 498 n 110 LYS 498 A ILE 499 n 111 ILE 499 A THR 500 n 112 THR 500 A ILE 501 n 113 ILE 501 A LYS 502 n 114 LYS 502 A ALA 503 n 115 ALA 503 A SER 504 n 116 SER 504 A SER 505 n 117 SER 505 A GLY 506 n 118 GLY 506 A LEU 507 n 119 LEU 507 A ASN 508 n 120 ASN 508 A GLU 509 n 121 GLU 509 A ASP 510 n 122 ASP 510 A GLU 511 n 123 GLU 511 A ILE 512 n 124 ILE 512 A GLN 513 n 125 GLN 513 A LYS 514 n 126 LYS 514 A MET 515 n 127 MET 515 A VAL 516 n 128 VAL 516 A ARG 517 n 129 ARG 517 A ASP 518 n 130 ASP 518 A ALA 519 n 131 ALA 519 A GLU 520 n 132 GLU 520 A ALA 521 n 133 ALA 521 A ASN 522 n 134 ASN 522 A ALA 523 n 135 ALA 523 A GLU 524 n 136 GLU 524 A ALA 525 n 137 ALA 525 A ASP 526 n 138 ASP 526 A ARG 527 n 139 ARG 527 A LYS 528 n 140 LYS 528 A PHE 529 n 141 PHE 529 A GLU 530 n 142 GLU 530 A GLU 531 n 143 GLU 531 A LEU 532 n 144 LEU 532 A VAL 533 n 145 VAL 533 A GLN 534 n 146 GLN 534 A THR 535 n 147 THR 535 A ARG 536 n 148 ARG 536 A ASN 537 n 149 ASN 537 A GLN 538 n 150 GLN 538 A GLY 539 n 151 GLY 539 A ASP 540 n 152 ASP 540 A HIS 541 n 153 HIS 541 A LEU 542 n 154 LEU 542 A LEU 543 n 155 LEU 543 A HIS 544 n 156 HIS 544 A SER 545 n 157 SER 545 A THR 546 n 158 THR 546 A ARG 547 n 159 ARG 547 A LYS 548 n 160 LYS 548 A GLN 549 n 161 GLN 549 A VAL 550 n 162 VAL 550 A GLU 551 n 163 GLU 551 A GLU 552 n 164 GLU 552 A ALA 553 n 165 ALA 553 A GLY 554 n 166 GLY 554 A ASP 555 n 167 ASP 555 A LYS 556 n 168 LYS 556 A LEU 557 n 169 LEU 557 A PRO 558 n 170 PRO 558 A ALA 559 n 171 ALA 559 A ASP 560 n 172 ASP 560 A ASP 561 n 173 ASP 561 A LYS 562 n 174 LYS 562 A THR 563 n 175 THR 563 A ALA 564 n 176 ALA 564 A ILE 565 n 177 ILE 565 A GLU 566 n 178 GLU 566 A SER 567 n 179 SER 567 A ALA 568 n 180 ALA 568 A LEU 569 n 181 LEU 569 A THR 570 n 182 THR 570 A ALA 571 n 183 ALA 571 A LEU 572 n 184 LEU 572 A GLU 573 n 185 GLU 573 A THR 574 n 186 THR 574 A ALA 575 n 187 ALA 575 A LEU 576 n 188 LEU 576 A LYS 577 n 189 LYS 577 A GLY 578 n 190 GLY 578 A GLU 579 n 191 GLU 579 A ASP 580 n 192 ASP 580 A LYS 581 n 193 LYS 581 A ALA 582 n 194 ALA 582 A ALA 583 n 195 ALA 583 A ILE 584 n 196 ILE 584 A GLU 585 n 197 GLU 585 A ALA 586 n 198 ALA 586 A LYS 587 n 199 LYS 587 A MET 588 n 200 MET 588 A GLN 589 n 201 GLN 589 A GLU 590 n 202 GLU 590 A LEU 591 n 203 LEU 591 A ALA 592 n 204 ALA 592 A GLN 593 n 205 GLN 593 A VAL 594 n 206 VAL 594 A SER 595 n 207 SER 595 A GLN 596 n 208 GLN 596 A LYS 597 n 209 LYS 597 A LEU 598 n 210 LEU 598 A MET 599 n 211 MET 599 A GLU 600 n 212 GLU 600 A ILE 601 n 213 ILE 601 A ALA 602 n 214 ALA 602 A GLN 603 n 215 GLN 603 A GLN 604 n 216 GLN 604 A GLN 605 n 217 GLN 605 A HIS 606 n 218 HIS 606 A n 219 607 A PRO 20 n 1 PRO 20 B ARG 21 n 2 ARG 21 B PRO 22 n 3 PRO 22 B GLY 23 n 4 GLY 23 B PRO 24 n 5 PRO 24 B ILE 25 n 6 ILE 25 B TYR 26 n 7 TYR 26 B TYR 27 n 8 TYR 27 B 7.1295 18.0485 9.9093 52.7937 34.2803 25.7309 -0.3886 0.1045 -0.4429 -1.6093 0.3562 -0.5775 -1.2535 0.2932 0.0324 0.2167 0.0347 -0.0934 0.0972 -0.0180 0.3419 refined 65.2130 119.2062 41.2621 X-RAY DIFFRACTION 1.4219 0.3088 -0.1813 2.0500 -0.5445 0.9184 0.1235 -0.0561 0.1338 -0.0609 -0.0952 0.0467 -0.0120 0.0227 -0.0283 0.0662 0.0191 0.0043 0.0683 -0.0252 0.0191 refined 60.0404 94.9257 31.7288 X-RAY DIFFRACTION 3.4332 1.0663 -0.2720 5.0184 -0.5855 0.1702 0.1186 -0.0191 0.6323 -0.0518 -0.1926 -0.1958 0.0156 0.0949 0.0740 0.1137 0.0231 0.0350 0.1281 0.0410 0.2325 refined 62.2444 102.4225 29.0235 X-RAY DIFFRACTION 1.0274 1.6976 -0.0159 11.8170 -1.8957 1.3980 -0.0187 0.0555 0.1297 0.0758 0.0042 0.1486 0.1585 0.0181 0.0145 0.0474 0.0034 -0.0204 0.0642 -0.0029 0.0459 refined 41.8997 81.8606 29.1728 X-RAY DIFFRACTION 2.1303 -1.3249 0.7582 3.2130 -0.5055 2.4783 0.0821 0.1822 -0.0144 -0.0725 0.0376 0.1492 0.3391 -0.1435 -0.1196 0.1041 -0.0493 -0.0362 0.1166 0.0044 0.0283 refined 35.5668 75.5688 27.8513 X-RAY DIFFRACTION A 389 A 394 X-RAY DIFFRACTION 1 A 395 A 484 X-RAY DIFFRACTION 2 A 485 A 523 X-RAY DIFFRACTION 3 A 524 A 558 X-RAY DIFFRACTION 4 A 559 A 606 X-RAY DIFFRACTION 5 software_defined_assembly PISA 8 octameric software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 4 tetrameric author_and_software_defined_assembly PISA 2 dimeric 18570 -119 36910 6920 -43 20820 4540 -44 23200 4380 -40 23360 1320 -15 12550 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_675 -x+1,-y+2,z crystal symmetry operation 94.4370000000 233.8100000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_657 -x+1,y,-z+2 crystal symmetry operation 94.4370000000 0.0000000000 73.9880000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_577 x,-y+2,-z+2 crystal symmetry operation 0.0000000000 233.8100000000 73.9880000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_656 -x+1,y,-z+1 crystal symmetry operation 94.4370000000 0.0000000000 36.9940000000 A O THR 409 A O THR 21 A N ILE 401 A N ILE 13 A N GLY 400 A N GLY 12 A O LEU 441 A O LEU 53 A N ILE 438 A N ILE 50 A O PHE 457 A O PHE 69 A O ILE 501 A O ILE 113 A N LEU 484 A N LEU 96 A O HIS 485 A O HIS 97 A N ASP 477 A N ASP 89 A O ILE 472 A O ILE 84 A N PHE 426 A N PHE 38 A N SER 427 A N SER 39 B O GLY 23 B O GLY 4 1 A SO4 701 C SO4 1 B CA TYR 27 B CA TYR 8 1 Y 1 B C TYR 27 B C TYR 8 1 Y 1 B O TYR 27 B O TYR 8 1 Y 1 B CB TYR 27 B CB TYR 8 1 Y 1 B CG TYR 27 B CG TYR 8 1 Y 1 B CD1 TYR 27 B CD1 TYR 8 1 Y 1 B CD2 TYR 27 B CD2 TYR 8 1 Y 1 B CE1 TYR 27 B CE1 TYR 8 1 Y 1 B CE2 TYR 27 B CE2 TYR 8 1 Y 1 B CZ TYR 27 B CZ TYR 8 1 Y 1 B OH TYR 27 B OH TYR 8 1 Y 1 A ALA 607 A ALA 219 1 Y 1 5.65 0.90 118.30 123.95 A A A CB CG OD1 ASP ASP ASP 393 393 393 N 1 5.95 0.90 118.30 124.25 A A A CB CG OD1 ASP ASP ASP 490 490 490 N 1 -16.62 2.30 111.70 95.08 A A A CD CE NZ LYS LYS LYS 581 581 581 N 1 A A CG CD2 HIS HIS 422 422 0.069 0.009 1.354 1.423 N 1 A A CG CD2 HIS HIS 544 544 0.057 0.009 1.354 1.411 N 1 A A CG CD2 HIS HIS 606 606 0.056 0.009 1.354 1.410 N 1 A MET 404 -30.83 118.09 1 A LYS 414 -38.23 137.94 1 A ASP 460 -107.70 -169.27 31.882 -1.30 0.00 0.00 -1.15 0.00 2.44 0.954 0.932 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.25639 0.19851 0.20132 1.90 20.00 839 15682 5.1 99.36 8.522 0.127 RANDOM 1 THROUGHOUT PDB ENTRY 1DKZ 0.179 0.169 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.90 20.00 85 1807 5 0 1717 0.018 0.019 1756 1.970 1.974 2372 5.560 5.000 229 39.447 26.375 80 17.891 15.000 335 20.648 15.000 9 0.139 0.200 278 0.010 0.021 1297 0.331 0.245 1.949 45 1034 20 95.83 1.9 20.00 4EZS 16552 0.041 1 99.7 0.344 1.9 2.0 1 3.2 98.3 data collection MAR345 refinement REFMAC with PDBID 1DKZ data reduction XDS data scaling SCALA phasing REFMAC with PDBID 1DKZ Crystal structure of the substrate binding domain of E.coli DnaK in complex with metchnikowin (residues 20 to 26) 1 N N 2 N N 3 N N 4 N N 4 N N A ARG 447 A ARG 59 HELX_P A ASN 451 A ASN 63 5 1 5 A ASN 508 A ASN 120 HELX_P A ASN 522 A ASN 134 1 2 15 A ASN 522 A ASN 134 HELX_P A GLY 554 A GLY 166 1 3 33 A ASP 555 A ASP 167 HELX_P A LEU 557 A LEU 169 5 4 3 A PRO 558 A PRO 170 HELX_P A LEU 576 A LEU 188 1 5 19 A ASP 580 A ASP 192 HELX_P A SER 595 A SER 207 1 6 16 A SER 595 A SER 207 HELX_P A HIS 606 A HIS 218 1 7 12 CHAPERONE/PEPTIDE BINDING PROTEIN chaperone, peptide binding, CHAPERONE-PEPTIDE BINDING PROTEIN complex A ILE 418 A ILE 30 1 A PRO 419 A PRO 31 -4.69 DNAK_ECOLI UNP 1 389 P0A6Y8 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA MTK_DROME UNP 2 46 Q24395 PRPGPIY 389 607 4EZS 389 607 P0A6Y8 A 1 1 219 46 52 4EZS 20 26 Q24395 B 2 1 7 2 expression tag TYR 27 4EZS B Q24395 UNP 8 4 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 407 A VAL 19 A ILE 412 A ILE 24 A LEU 399 A LEU 11 A THR 403 A THR 15 A VAL 436 A VAL 48 A GLN 442 A GLN 54 A LYS 452 A LYS 64 A LEU 459 A LEU 71 A GLU 496 A GLU 108 A ILE 501 A ILE 113 A LEU 484 A LEU 96 A ASP 490 A ASP 102 A ILE 472 A ILE 84 A ILE 478 A ILE 90 A THR 420 A THR 32 A THR 428 A THR 40 B PRO 22 B PRO 3 B GLY 23 B GLY 4 BINDING SITE FOR RESIDUE SO4 A 701 A SO4 701 Software 2 A ARG 445 A ARG 57 2 3_656 A ARG 445 A ARG 57 2 1_555 23 I 2 2 2