0.010671
0.000000
0.000000
0.000000
0.008577
0.000000
0.000000
0.000000
0.026986
0.00000
0.00000
0.00000
Zahn, M.
Straeter, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
93.711
116.593
37.056
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
2463
2479
10.1016/j.jmb.2013.03.041
23562829
Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
2013
10.2210/pdb4ezz/pdb
pdb_00004ezz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-12-01
MARMOSAIC 225 mm CCD
Si 111
SINGLE WAVELENGTH
M
x-ray
1
0.918
1.0
14.1
BESSY
0.918
SYNCHROTRON
BESSY BEAMLINE 14.1
23820.777
Chaperone protein DnaK
UNP residues 389-607
1
man
polymer
812.028
synthetic peptide ELPLVKI
1
syn
polymer
18.015
water
30
nat
water
HSP70, Heat shock 70 kDa protein, Heat shock protein 70
no
no
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG
MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK
QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG
MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK
QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA
A
polypeptide(L)
no
no
ELPLVKI
ELPLVKI
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K-12
sample
b0014, dnaK, groP, grpF, JW0013, seg
83333
Escherichia coli
562
Escherichia coli
1
2.05
40.13
VAPOR DIFFUSION, HANGING DROP
9.0
3.0 M ammonium sulfate,
0.1 M bicine pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
292
software
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Database references
Refinement description
Data collection
Database references
1
0
2013-04-17
1
1
2013-07-17
1
2
2017-11-15
1
3
2024-02-28
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2012-05-03
REL
REL
HOH
water
synthetic peptide
sample
HOH
1
3
HOH
HOH
701
A
HOH
2
3
HOH
HOH
702
A
HOH
3
3
HOH
HOH
703
A
HOH
4
3
HOH
HOH
704
A
HOH
5
3
HOH
HOH
705
A
HOH
6
3
HOH
HOH
706
A
HOH
7
3
HOH
HOH
707
A
HOH
8
3
HOH
HOH
708
A
HOH
9
3
HOH
HOH
709
A
HOH
10
3
HOH
HOH
710
A
HOH
11
3
HOH
HOH
711
A
HOH
12
3
HOH
HOH
712
A
HOH
13
3
HOH
HOH
713
A
HOH
14
3
HOH
HOH
714
A
HOH
15
3
HOH
HOH
715
A
HOH
16
3
HOH
HOH
716
A
HOH
17
3
HOH
HOH
717
A
HOH
18
3
HOH
HOH
718
A
HOH
19
3
HOH
HOH
719
A
HOH
20
3
HOH
HOH
720
A
HOH
21
3
HOH
HOH
721
A
HOH
22
3
HOH
HOH
722
A
HOH
23
3
HOH
HOH
723
A
HOH
24
3
HOH
HOH
724
A
HOH
25
3
HOH
HOH
725
A
HOH
26
3
HOH
HOH
726
A
HOH
27
3
HOH
HOH
727
A
HOH
28
3
HOH
HOH
728
A
HOH
29
3
HOH
HOH
729
A
HOH
30
3
HOH
HOH
730
A
VAL
389
n
1
VAL
389
A
LEU
390
n
2
LEU
390
A
LEU
391
n
3
LEU
391
A
LEU
392
n
4
LEU
392
A
ASP
393
n
5
ASP
393
A
VAL
394
n
6
VAL
394
A
THR
395
n
7
THR
395
A
PRO
396
n
8
PRO
396
A
LEU
397
n
9
LEU
397
A
SER
398
n
10
SER
398
A
LEU
399
n
11
LEU
399
A
GLY
400
n
12
GLY
400
A
ILE
401
n
13
ILE
401
A
GLU
402
n
14
GLU
402
A
THR
403
n
15
THR
403
A
MET
404
n
16
MET
404
A
GLY
405
n
17
GLY
405
A
GLY
406
n
18
GLY
406
A
VAL
407
n
19
VAL
407
A
MET
408
n
20
MET
408
A
THR
409
n
21
THR
409
A
THR
410
n
22
THR
410
A
LEU
411
n
23
LEU
411
A
ILE
412
n
24
ILE
412
A
ALA
413
n
25
ALA
413
A
LYS
414
n
26
LYS
414
A
ASN
415
n
27
ASN
415
A
THR
416
n
28
THR
416
A
THR
417
n
29
THR
417
A
ILE
418
n
30
ILE
418
A
PRO
419
n
31
PRO
419
A
THR
420
n
32
THR
420
A
LYS
421
n
33
LYS
421
A
HIS
422
n
34
HIS
422
A
SER
423
n
35
SER
423
A
GLN
424
n
36
GLN
424
A
VAL
425
n
37
VAL
425
A
PHE
426
n
38
PHE
426
A
SER
427
n
39
SER
427
A
THR
428
n
40
THR
428
A
ALA
429
n
41
ALA
429
A
GLU
430
n
42
GLU
430
A
ASP
431
n
43
ASP
431
A
ASN
432
n
44
ASN
432
A
GLN
433
n
45
GLN
433
A
SER
434
n
46
SER
434
A
ALA
435
n
47
ALA
435
A
VAL
436
n
48
VAL
436
A
THR
437
n
49
THR
437
A
ILE
438
n
50
ILE
438
A
HIS
439
n
51
HIS
439
A
VAL
440
n
52
VAL
440
A
LEU
441
n
53
LEU
441
A
GLN
442
n
54
GLN
442
A
GLY
443
n
55
GLY
443
A
GLU
444
n
56
GLU
444
A
ARG
445
n
57
ARG
445
A
LYS
446
n
58
LYS
446
A
ARG
447
n
59
ARG
447
A
ALA
448
n
60
ALA
448
A
ALA
449
n
61
ALA
449
A
ASP
450
n
62
ASP
450
A
ASN
451
n
63
ASN
451
A
LYS
452
n
64
LYS
452
A
SER
453
n
65
SER
453
A
LEU
454
n
66
LEU
454
A
GLY
455
n
67
GLY
455
A
GLN
456
n
68
GLN
456
A
PHE
457
n
69
PHE
457
A
ASN
458
n
70
ASN
458
A
LEU
459
n
71
LEU
459
A
ASP
460
n
72
ASP
460
A
GLY
461
n
73
GLY
461
A
ILE
462
n
74
ILE
462
A
ASN
463
n
75
ASN
463
A
PRO
464
n
76
PRO
464
A
ALA
465
n
77
ALA
465
A
PRO
466
n
78
PRO
466
A
ARG
467
n
79
ARG
467
A
GLY
468
n
80
GLY
468
A
MET
469
n
81
MET
469
A
PRO
470
n
82
PRO
470
A
GLN
471
n
83
GLN
471
A
ILE
472
n
84
ILE
472
A
GLU
473
n
85
GLU
473
A
VAL
474
n
86
VAL
474
A
THR
475
n
87
THR
475
A
PHE
476
n
88
PHE
476
A
ASP
477
n
89
ASP
477
A
ILE
478
n
90
ILE
478
A
ASP
479
n
91
ASP
479
A
ALA
480
n
92
ALA
480
A
ASP
481
n
93
ASP
481
A
GLY
482
n
94
GLY
482
A
ILE
483
n
95
ILE
483
A
LEU
484
n
96
LEU
484
A
HIS
485
n
97
HIS
485
A
VAL
486
n
98
VAL
486
A
SER
487
n
99
SER
487
A
ALA
488
n
100
ALA
488
A
LYS
489
n
101
LYS
489
A
ASP
490
n
102
ASP
490
A
LYS
491
n
103
LYS
491
A
ASN
492
n
104
ASN
492
A
SER
493
n
105
SER
493
A
GLY
494
n
106
GLY
494
A
LYS
495
n
107
LYS
495
A
GLU
496
n
108
GLU
496
A
GLN
497
n
109
GLN
497
A
LYS
498
n
110
LYS
498
A
ILE
499
n
111
ILE
499
A
THR
500
n
112
THR
500
A
ILE
501
n
113
ILE
501
A
LYS
502
n
114
LYS
502
A
ALA
503
n
115
ALA
503
A
SER
504
n
116
SER
504
A
SER
505
n
117
SER
505
A
GLY
506
n
118
GLY
506
A
LEU
507
n
119
LEU
507
A
ASN
508
n
120
ASN
508
A
GLU
509
n
121
GLU
509
A
ASP
510
n
122
ASP
510
A
GLU
511
n
123
GLU
511
A
ILE
512
n
124
ILE
512
A
GLN
513
n
125
GLN
513
A
LYS
514
n
126
LYS
514
A
MET
515
n
127
MET
515
A
VAL
516
n
128
VAL
516
A
ARG
517
n
129
ARG
517
A
ASP
518
n
130
ASP
518
A
ALA
519
n
131
ALA
519
A
GLU
520
n
132
GLU
520
A
ALA
521
n
133
ALA
521
A
ASN
522
n
134
ASN
522
A
ALA
523
n
135
ALA
523
A
GLU
524
n
136
GLU
524
A
ALA
525
n
137
ALA
525
A
ASP
526
n
138
ASP
526
A
ARG
527
n
139
ARG
527
A
LYS
528
n
140
LYS
528
A
PHE
529
n
141
PHE
529
A
GLU
530
n
142
GLU
530
A
GLU
531
n
143
GLU
531
A
LEU
532
n
144
LEU
532
A
VAL
533
n
145
VAL
533
A
GLN
534
n
146
GLN
534
A
THR
535
n
147
THR
535
A
ARG
536
n
148
ARG
536
A
ASN
537
n
149
ASN
537
A
GLN
538
n
150
GLN
538
A
GLY
539
n
151
GLY
539
A
ASP
540
n
152
ASP
540
A
HIS
541
n
153
HIS
541
A
LEU
542
n
154
LEU
542
A
LEU
543
n
155
LEU
543
A
HIS
544
n
156
HIS
544
A
SER
545
n
157
SER
545
A
THR
546
n
158
THR
546
A
ARG
547
n
159
ARG
547
A
LYS
548
n
160
LYS
548
A
GLN
549
n
161
GLN
549
A
VAL
550
n
162
VAL
550
A
GLU
551
n
163
GLU
551
A
GLU
552
n
164
GLU
552
A
ALA
553
n
165
ALA
553
A
GLY
554
n
166
GLY
554
A
ASP
555
n
167
ASP
555
A
LYS
556
n
168
LYS
556
A
LEU
557
n
169
LEU
557
A
PRO
558
n
170
PRO
558
A
ALA
559
n
171
ALA
559
A
ASP
560
n
172
ASP
560
A
ASP
561
n
173
ASP
561
A
LYS
562
n
174
LYS
562
A
THR
563
n
175
THR
563
A
ALA
564
n
176
ALA
564
A
ILE
565
n
177
ILE
565
A
GLU
566
n
178
GLU
566
A
SER
567
n
179
SER
567
A
ALA
568
n
180
ALA
568
A
LEU
569
n
181
LEU
569
A
THR
570
n
182
THR
570
A
ALA
571
n
183
ALA
571
A
LEU
572
n
184
LEU
572
A
GLU
573
n
185
GLU
573
A
THR
574
n
186
THR
574
A
ALA
575
n
187
ALA
575
A
LEU
576
n
188
LEU
576
A
LYS
577
n
189
LYS
577
A
GLY
578
n
190
GLY
578
A
GLU
579
n
191
GLU
579
A
ASP
580
n
192
ASP
580
A
LYS
581
n
193
LYS
581
A
ALA
582
n
194
ALA
582
A
ALA
583
n
195
ALA
583
A
ILE
584
n
196
ILE
584
A
GLU
585
n
197
GLU
585
A
ALA
586
n
198
ALA
586
A
LYS
587
n
199
LYS
587
A
MET
588
n
200
MET
588
A
GLN
589
n
201
GLN
589
A
GLU
590
n
202
GLU
590
A
LEU
591
n
203
LEU
591
A
ALA
592
n
204
ALA
592
A
GLN
593
n
205
GLN
593
A
VAL
594
n
206
VAL
594
A
SER
595
n
207
SER
595
A
GLN
596
n
208
GLN
596
A
LYS
597
n
209
LYS
597
A
LEU
598
n
210
LEU
598
A
MET
599
n
211
MET
599
A
GLU
600
n
212
GLU
600
A
ILE
601
n
213
ILE
601
A
ALA
602
n
214
ALA
602
A
GLN
603
n
215
GLN
603
A
GLN
604
n
216
GLN
604
A
GLN
605
n
217
GLN
605
A
HIS
606
n
218
HIS
606
A
n
219
607
A
GLU
1
n
1
GLU
1
B
LEU
2
n
2
LEU
2
B
PRO
3
n
3
PRO
3
B
LEU
4
n
4
LEU
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
ILE
7
n
7
ILE
7
B
2.0927
4.3725
4.6401
10.0775
11.0003
12.0980
0.0903
0.1156
-0.5547
-0.1584
0.3687
-0.6035
-0.2821
0.4267
-0.4590
0.2407
-0.0205
-0.1366
0.1692
0.0094
0.5664
refined
62.2873
115.1428
38.1035
X-RAY DIFFRACTION
2.4108
0.5596
0.0978
1.8664
-0.3402
0.3918
0.1433
0.0515
0.2600
-0.1543
-0.1251
-0.0193
0.0500
0.0376
-0.0182
0.1000
0.0481
0.0157
0.1105
-0.0219
0.0556
refined
58.6915
96.8239
30.5302
X-RAY DIFFRACTION
1.8440
-1.3847
0.0067
5.7344
-1.6075
2.6756
0.0961
0.0035
-0.1567
-0.1044
0.0114
-0.0892
0.2298
-0.0166
-0.1076
0.0989
-0.0176
-0.0818
0.1109
0.0276
0.0844
refined
37.4812
74.8053
28.7762
X-RAY DIFFRACTION
A
389
A
398
X-RAY DIFFRACTION
1
A
399
A
533
X-RAY DIFFRACTION
2
A
534
A
606
X-RAY DIFFRACTION
3
software_defined_assembly
PISA
8
octameric
software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
4
tetrameric
author_and_software_defined_assembly
PISA
2
dimeric
17480
-96
37410
4290
-34
23160
6520
-31
20930
1240
-10
12480
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_675
-x+1,-y+2,z
crystal symmetry operation
93.7110000000
233.1860000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_657
-x+1,y,-z+2
crystal symmetry operation
93.7110000000
0.0000000000
74.1120000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_577
x,-y+2,-z+2
crystal symmetry operation
0.0000000000
233.1860000000
74.1120000000
A
O
THR
409
A
O
THR
21
A
N
ILE
401
A
N
ILE
13
A
N
GLY
400
A
N
GLY
12
A
O
LEU
441
A
O
LEU
53
A
N
ILE
438
A
N
ILE
50
A
O
PHE
457
A
O
PHE
69
A
O
ILE
501
A
O
ILE
113
A
N
LEU
484
A
N
LEU
96
A
O
LYS
489
A
O
LYS
101
A
N
GLU
473
A
N
GLU
85
A
O
PHE
476
A
O
PHE
88
A
N
HIS
422
A
N
HIS
34
A
N
SER
427
A
N
SER
39
B
O
VAL
5
B
O
VAL
5
1
A
ALA
607
A
ALA
219
1
Y
1
7.09
0.90
118.30
125.39
A
A
A
CB
CG
OD1
ASP
ASP
ASP
526
526
526
N
1
A
MET
404
-33.83
117.77
1
A
LYS
414
-36.31
133.18
1
A
ASN
415
70.68
33.49
1
A
ASP
460
-111.15
-163.51
38.607
-2.14
0.00
0.00
-2.00
0.00
4.13
0.947
0.882
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.30779
0.21751
0.22135
2.05
25.00
624
12250
4.8
97.61
13.591
0.180
RANDOM
1
THROUGHOUT
PDB ID 1DKZ
0.264
0.244
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.05
25.00
30
1747
0
0
1717
0.016
0.019
1736
1.881
1.976
2341
6.243
5.000
225
43.044
26.923
78
17.950
15.000
338
8.897
15.000
7
0.117
0.200
279
0.008
0.021
1271
0.392
0.281
2.103
45
748
20
88.31
2.05
25
4EZZ
12888
0.053
1
98.1
0.475
2.05
2.16
1
4.0
94.3
data collection
MAR345
refinement
REFMAC
with PDBID 1DKZ
data reduction
XDS
data scaling
SCALA
phasing
REFMAC
with PDBID 1DKZ
Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide ELPLVKI
1
N
N
2
N
N
3
N
N
A
ARG
447
A
ARG
59
HELX_P
A
ASN
451
A
ASN
63
5
1
5
A
ASN
508
A
ASN
120
HELX_P
A
ASN
522
A
ASN
134
1
2
15
A
ASN
522
A
ASN
134
HELX_P
A
GLY
554
A
GLY
166
1
3
33
A
ASP
555
A
ASP
167
HELX_P
A
LEU
557
A
LEU
169
5
4
3
A
PRO
558
A
PRO
170
HELX_P
A
LYS
577
A
LYS
189
1
5
20
A
ASP
580
A
ASP
192
HELX_P
A
SER
595
A
SER
207
1
6
16
A
SER
595
A
SER
207
HELX_P
A
HIS
606
A
HIS
218
1
7
12
CHAPERONE
chaperone, peptide binding mode
A
ILE
418
A
ILE
30
1
A
PRO
419
A
PRO
31
-11.64
DNAK_ECOLI
UNP
1
389
P0A6Y8
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG
MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK
QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA
4EZZ
PDB
2
4EZZ
389
607
4EZZ
389
607
P0A6Y8
A
1
1
219
1
7
4EZZ
1
7
4EZZ
B
2
1
7
4
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
407
A
VAL
19
A
ILE
412
A
ILE
24
A
LEU
399
A
LEU
11
A
THR
403
A
THR
15
A
VAL
436
A
VAL
48
A
GLN
442
A
GLN
54
A
LYS
452
A
LYS
64
A
LEU
459
A
LEU
71
A
GLU
496
A
GLU
108
A
ILE
501
A
ILE
113
A
LEU
484
A
LEU
96
A
ASP
490
A
ASP
102
A
ILE
472
A
ILE
84
A
ILE
478
A
ILE
90
A
THR
420
A
THR
32
A
SER
427
A
SER
39
B
VAL
5
B
VAL
5
B
LYS
6
B
LYS
6
23
I 2 2 2