0.028205
0.000000
0.000000
0.000000
0.026789
0.000000
0.000000
0.000000
0.014431
0.00000
0.00000
0.00000
Fu, Y.
Dann III, C.E.
Giedroc, D.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
35.455
37.329
69.294
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
Cu 1
63.546
COPPER (I) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
CU
N
76
N
N
N
77
R
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
S
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
S
C
N
141
N
C
N
142
N
O
N
143
N
C
Y
144
N
C
Y
145
N
N
Y
146
N
C
Y
147
N
C
Y
148
N
N
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
S
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
N
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
S
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
R
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
US
Nat.Chem.Biol.
1552-4450
9
177
183
10.1038/nchembio.1168
23354287
A new structural paradigm in copper resistance in Streptococcus pneumoniae.
2013
10.2210/pdb4f2f/pdb
pdb_00004f2f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
113
1
CCD
2011-04-22
NOIR-1
IMAGE PLATE
2011-04-19
RIGAKU RAXIS IV++
sagitally focused Si(111)
SINGLE WAVELENGTH
M
x-ray
1
osmic mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.37757
1.0
1.54178
1.0
4.2.2
ALS
1.37757
SYNCHROTRON
ALS BEAMLINE 4.2.2
1.54178
ROTATING ANODE
RIGAKU
11345.005
Cation-transporting ATPase, E1-E2 family protein
3.6.3.4
metal binding domain (UNP residues 1-99)
1
man
polymer
63.546
COPPER (I) ION
2
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
123
nat
water
CopA
no
no
GMTEIVKASLENGIQKIRIQAEKGYHPAHIQLQKGIPAEITFHRATPSNCYKEILFEEEGILEPIGVDEEKVIRFTPQEL
GRHEFSCGMKMQKGSYTVVE
GMTEIVKASLENGIQKIRIQAEKGYHPAHIQLQKGIPAEITFHRATPSNCYKEILFEEEGILEPIGVDEEKVIRFTPQEL
GRHEFSCGMKMQKGSYTVVE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
D39 / NCTC 7466
sample
SPD0635, SPD_0635
373153
Streptococcus pneumoniae
469008
Escherichia coli
BL21(DE3)
plasmid
pHis
2
2.02
39.14
VAPOR DIFFUSION, HANGING DROP
6.5
28% w/v PEG2000 MME, 0.1 M Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
1
0
2013-01-30
1
1
2013-02-13
1
2
2013-03-06
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-05-07
REL
REL
CU1
COPPER (I) ION
CL
CHLORIDE ION
HOH
water
CU1
1
2
CU1
CU1
101
A
CU1
2
2
CU1
CU1
102
A
CL
1
3
CL
CL
103
A
HOH
1
4
HOH
HOH
201
A
HOH
2
4
HOH
HOH
202
A
HOH
3
4
HOH
HOH
203
A
HOH
4
4
HOH
HOH
204
A
HOH
5
4
HOH
HOH
205
A
HOH
6
4
HOH
HOH
206
A
HOH
7
4
HOH
HOH
207
A
HOH
8
4
HOH
HOH
208
A
HOH
9
4
HOH
HOH
209
A
HOH
10
4
HOH
HOH
210
A
HOH
11
4
HOH
HOH
211
A
HOH
12
4
HOH
HOH
212
A
HOH
13
4
HOH
HOH
213
A
HOH
14
4
HOH
HOH
214
A
HOH
15
4
HOH
HOH
215
A
HOH
16
4
HOH
HOH
216
A
HOH
17
4
HOH
HOH
217
A
HOH
18
4
HOH
HOH
218
A
HOH
19
4
HOH
HOH
219
A
HOH
20
4
HOH
HOH
220
A
HOH
21
4
HOH
HOH
221
A
HOH
22
4
HOH
HOH
222
A
HOH
23
4
HOH
HOH
223
A
HOH
24
4
HOH
HOH
224
A
HOH
25
4
HOH
HOH
225
A
HOH
26
4
HOH
HOH
226
A
HOH
27
4
HOH
HOH
227
A
HOH
28
4
HOH
HOH
228
A
HOH
29
4
HOH
HOH
229
A
HOH
30
4
HOH
HOH
230
A
HOH
31
4
HOH
HOH
231
A
HOH
32
4
HOH
HOH
232
A
HOH
33
4
HOH
HOH
233
A
HOH
34
4
HOH
HOH
234
A
HOH
35
4
HOH
HOH
235
A
HOH
36
4
HOH
HOH
236
A
HOH
37
4
HOH
HOH
237
A
HOH
38
4
HOH
HOH
238
A
HOH
39
4
HOH
HOH
239
A
HOH
40
4
HOH
HOH
240
A
HOH
41
4
HOH
HOH
241
A
HOH
42
4
HOH
HOH
242
A
HOH
43
4
HOH
HOH
243
A
HOH
44
4
HOH
HOH
244
A
HOH
45
4
HOH
HOH
245
A
HOH
46
4
HOH
HOH
246
A
HOH
47
4
HOH
HOH
247
A
HOH
48
4
HOH
HOH
248
A
HOH
49
4
HOH
HOH
249
A
HOH
50
4
HOH
HOH
250
A
HOH
51
4
HOH
HOH
251
A
HOH
52
4
HOH
HOH
252
A
HOH
53
4
HOH
HOH
253
A
HOH
54
4
HOH
HOH
254
A
HOH
55
4
HOH
HOH
255
A
HOH
56
4
HOH
HOH
256
A
HOH
57
4
HOH
HOH
257
A
HOH
58
4
HOH
HOH
258
A
HOH
59
4
HOH
HOH
259
A
HOH
60
4
HOH
HOH
260
A
HOH
61
4
HOH
HOH
261
A
HOH
62
4
HOH
HOH
262
A
HOH
63
4
HOH
HOH
263
A
HOH
64
4
HOH
HOH
264
A
HOH
65
4
HOH
HOH
265
A
HOH
66
4
HOH
HOH
266
A
HOH
67
4
HOH
HOH
267
A
HOH
68
4
HOH
HOH
268
A
HOH
69
4
HOH
HOH
269
A
HOH
70
4
HOH
HOH
270
A
HOH
71
4
HOH
HOH
271
A
HOH
72
4
HOH
HOH
272
A
HOH
73
4
HOH
HOH
273
A
HOH
74
4
HOH
HOH
274
A
HOH
75
4
HOH
HOH
275
A
HOH
76
4
HOH
HOH
276
A
HOH
77
4
HOH
HOH
277
A
HOH
78
4
HOH
HOH
278
A
HOH
79
4
HOH
HOH
279
A
HOH
80
4
HOH
HOH
280
A
HOH
81
4
HOH
HOH
281
A
HOH
82
4
HOH
HOH
282
A
HOH
83
4
HOH
HOH
283
A
HOH
84
4
HOH
HOH
284
A
HOH
85
4
HOH
HOH
285
A
HOH
86
4
HOH
HOH
286
A
HOH
87
4
HOH
HOH
287
A
HOH
88
4
HOH
HOH
288
A
HOH
89
4
HOH
HOH
289
A
HOH
90
4
HOH
HOH
290
A
HOH
91
4
HOH
HOH
291
A
HOH
92
4
HOH
HOH
292
A
HOH
93
4
HOH
HOH
293
A
HOH
94
4
HOH
HOH
294
A
HOH
95
4
HOH
HOH
295
A
HOH
96
4
HOH
HOH
296
A
HOH
97
4
HOH
HOH
297
A
HOH
98
4
HOH
HOH
298
A
HOH
99
4
HOH
HOH
299
A
HOH
100
4
HOH
HOH
300
A
HOH
101
4
HOH
HOH
301
A
HOH
102
4
HOH
HOH
302
A
HOH
103
4
HOH
HOH
303
A
HOH
104
4
HOH
HOH
304
A
HOH
105
4
HOH
HOH
305
A
HOH
106
4
HOH
HOH
306
A
HOH
107
4
HOH
HOH
307
A
HOH
108
4
HOH
HOH
308
A
HOH
109
4
HOH
HOH
309
A
HOH
110
4
HOH
HOH
310
A
HOH
111
4
HOH
HOH
311
A
HOH
112
4
HOH
HOH
312
A
HOH
113
4
HOH
HOH
313
A
HOH
114
4
HOH
HOH
314
A
HOH
115
4
HOH
HOH
315
A
HOH
116
4
HOH
HOH
316
A
HOH
117
4
HOH
HOH
317
A
HOH
118
4
HOH
HOH
318
A
HOH
119
4
HOH
HOH
319
A
HOH
120
4
HOH
HOH
320
A
HOH
121
4
HOH
HOH
321
A
HOH
122
4
HOH
HOH
322
A
HOH
123
4
HOH
HOH
323
A
GLY
0
n
1
GLY
0
A
MET
1
n
2
MET
1
A
THR
2
n
3
THR
2
A
GLU
3
n
4
GLU
3
A
ILE
4
n
5
ILE
4
A
VAL
5
n
6
VAL
5
A
ALA
6
n
7
LYS
6
A
ALA
7
n
8
ALA
7
A
SER
8
n
9
SER
8
A
LEU
9
n
10
LEU
9
A
ALA
10
n
11
GLU
10
A
ASN
11
n
12
ASN
11
A
GLY
12
n
13
GLY
12
A
ILE
13
n
14
ILE
13
A
GLN
14
n
15
GLN
14
A
LYS
15
n
16
LYS
15
A
ILE
16
n
17
ILE
16
A
ARG
17
n
18
ARG
17
A
ILE
18
n
19
ILE
18
A
ALA
19
n
20
GLN
19
A
ALA
20
n
21
ALA
20
A
GLU
21
n
22
GLU
21
A
LYS
22
n
23
LYS
22
A
GLY
23
n
24
GLY
23
A
TYR
24
n
25
TYR
24
A
HIS
25
n
26
HIS
25
A
PRO
26
n
27
PRO
26
A
ALA
27
n
28
ALA
27
A
HIS
28
n
29
HIS
28
A
ILE
29
n
30
ILE
29
A
GLN
30
n
31
GLN
30
A
LEU
31
n
32
LEU
31
A
GLN
32
n
33
GLN
32
A
LYS
33
n
34
LYS
33
A
GLY
34
n
35
GLY
34
A
ILE
35
n
36
ILE
35
A
PRO
36
n
37
PRO
36
A
ALA
37
n
38
ALA
37
A
GLU
38
n
39
GLU
38
A
ILE
39
n
40
ILE
39
A
THR
40
n
41
THR
40
A
PHE
41
n
42
PHE
41
A
HIS
42
n
43
HIS
42
A
ARG
43
n
44
ARG
43
A
ALA
44
n
45
ALA
44
A
THR
45
n
46
THR
45
A
PRO
46
n
47
PRO
46
A
SER
47
n
48
SER
47
A
ASN
48
n
49
ASN
48
A
CYS
49
n
50
CYS
49
A
TYR
50
n
51
TYR
50
A
LYS
51
n
52
LYS
51
A
GLU
52
n
53
GLU
52
A
ILE
53
n
54
ILE
53
A
LEU
54
n
55
LEU
54
A
PHE
55
n
56
PHE
55
A
GLU
56
n
57
GLU
56
A
GLU
57
n
58
GLU
57
A
GLU
58
n
59
GLU
58
A
GLY
59
n
60
GLY
59
A
ILE
60
n
61
ILE
60
A
LEU
61
n
62
LEU
61
A
GLU
62
n
63
GLU
62
A
PRO
63
n
64
PRO
63
A
ILE
64
n
65
ILE
64
A
GLY
65
n
66
GLY
65
A
VAL
66
n
67
VAL
66
A
ASP
67
n
68
ASP
67
A
GLU
68
n
69
GLU
68
A
GLU
69
n
70
GLU
69
A
LYS
70
n
71
LYS
70
A
VAL
71
n
72
VAL
71
A
ILE
72
n
73
ILE
72
A
ARG
73
n
74
ARG
73
A
PHE
74
n
75
PHE
74
A
THR
75
n
76
THR
75
A
PRO
76
n
77
PRO
76
A
GLN
77
n
78
GLN
77
A
GLU
78
n
79
GLU
78
A
LEU
79
n
80
LEU
79
A
GLY
80
n
81
GLY
80
A
ARG
81
n
82
ARG
81
A
HIS
82
n
83
HIS
82
A
GLU
83
n
84
GLU
83
A
PHE
84
n
85
PHE
84
A
SER
85
n
86
SER
85
A
CYS
86
n
87
CYS
86
A
GLY
87
n
88
GLY
87
A
MET
88
n
89
MET
88
A
LYS
89
n
90
LYS
89
A
MET
90
n
91
MET
90
A
GLN
91
n
92
GLN
91
A
LYS
92
n
93
LYS
92
A
GLY
93
n
94
GLY
93
A
SER
94
n
95
SER
94
A
TYR
95
n
96
TYR
95
A
THR
96
n
97
THR
96
A
VAL
97
n
98
VAL
97
A
VAL
98
n
99
VAL
98
A
GLU
99
n
100
GLU
99
A
author_and_software_defined_assembly
PISA
1
monomeric
A
CYS
49
A
SG
CYS
50
1_555
A
CU1
101
B
CU
CU1
1_555
A
CYS
86
A
SG
CYS
87
1_555
158.5
A
CYS
49
A
SG
CYS
50
1_555
A
CU1
102
C
CU
CU1
1_555
A
MET
88
A
SD
MET
89
1_555
121.0
A
CYS
49
A
SG
CYS
50
1_555
A
CU1
102
C
CU
CU1
1_555
A
MET
90
A
SD
MET
91
1_555
118.5
A
MET
88
A
SD
MET
89
1_555
A
CU1
102
C
CU
CU1
1_555
A
MET
90
A
SD
MET
91
1_555
114.6
A
CYS
49
A
SG
CYS
50
1_555
A
CU1
102
C
CU
CU1
1_555
A
CL
103
D
CL
CL
1_555
99.9
A
MET
88
A
SD
MET
89
1_555
A
CU1
102
C
CU
CU1
1_555
A
CL
103
D
CL
CL
1_555
90.9
A
MET
90
A
SD
MET
91
1_555
A
CU1
102
C
CU
CU1
1_555
A
CL
103
D
CL
CL
1_555
103.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
5
A
N
VAL
6
A
O
HIS
28
A
O
HIS
29
A
N
LEU
31
A
N
LEU
32
A
O
THR
96
A
O
THR
97
A
O
VAL
97
A
O
VAL
98
A
N
GLY
80
A
N
GLY
81
A
O
SER
85
A
O
SER
86
A
N
LEU
54
A
N
LEU
55
A
N
ILE
53
A
N
ILE
54
A
O
GLU
62
A
O
GLU
63
A
N
SER
8
A
N
SER
9
A
O
LYS
15
A
O
LYS
16
A
N
GLN
19
A
N
GLN
20
A
O
HIS
25
A
O
HIS
26
A
N
SER
8
A
N
SER
9
A
O
LYS
15
A
O
LYS
16
A
N
ILE
18
A
N
ILE
19
A
O
THR
40
A
O
THR
41
A
N
ILE
39
A
N
ILE
40
A
O
ILE
72
A
O
ILE
73
1
A
CG
LYS
6
A
CG
LYS
7
1
Y
1
A
CD
LYS
6
A
CD
LYS
7
1
Y
1
A
CE
LYS
6
A
CE
LYS
7
1
Y
1
A
NZ
LYS
6
A
NZ
LYS
7
1
Y
1
A
CG
GLU
10
A
CG
GLU
11
1
Y
1
A
CD
GLU
10
A
CD
GLU
11
1
Y
1
A
OE1
GLU
10
A
OE1
GLU
11
1
Y
1
A
OE2
GLU
10
A
OE2
GLU
11
1
Y
1
A
CG
GLN
19
A
CG
GLN
20
1
Y
1
A
CD
GLN
19
A
CD
GLN
20
1
Y
1
A
OE1
GLN
19
A
OE1
GLN
20
1
Y
1
A
NE2
GLN
19
A
NE2
GLN
20
1
Y
1
A
A
O
O
HOH
HOH
297
320
2.14
1
A
A
O
O
HOH
HOH
297
303
2.02
1_555
1_565
1
A
GLU
21
-172.67
113.52
3.0013
0.0000
-0.0000
-1.5114
0.0000
-1.4900
0.2430
0.2134
0.2166
1.500
20.645
1567
15410
15310
10.24
99.96
0.31
RANDOM
1,2
1.34
SAD
21.30
0.04
0.40
ML
FLAT BULK SOLVENT MODEL
45.939
0.409
1.500
20.645
123
909
3
0
783
0.020
805
0.766
1083
13.560
305
0.045
117
0.003
141
0.2561
0.2320
1.5484
124
1245
100.0
0.2672
0.2082
1.6037
146
1215
100.0
0.2503
0.1979
1.6679
139
1219
100.0
0.2300
0.2099
1.7438
141
1226
100.0
0.2425
0.2192
1.8357
144
1242
100.0
0.2467
0.2195
1.9506
154
1212
100.0
0.2701
0.2234
2.1011
155
1237
100.0
0.2631
0.2200
2.3123
132
1255
100.0
0.2354
0.2243
2.6463
135
1256
100.0
0.2710
0.2236
3.3317
143
1283
100.0
0.2125
0.1971
20.6471
154
1353
100.0
1.45
50.0
4F2F
16959
16813
0
0
0.035
1,2
43.0
11.4
99.9
0.363
1.45
1.48
6.3
1,2
10.6
100
0.284
1.48
1.50
8.2
1,2
10.9
100.0
0.230
1.50
1.53
9.6
1,2
11.1
100.0
0.188
1.53
1.56
11.1
1,2
11.1
100.0
0.161
1.56
1.60
13.1
1,2
11.2
100.0
0.141
1.60
1.63
14.6
1,2
11.2
100.0
0.118
1.63
1.67
18.6
1,2
11.3
100.0
0.101
1.67
1.72
21.3
1,2
11.3
100.0
0.091
1.72
1.77
22.3
1,2
11.5
100.0
0.077
1.77
1.83
25.6
1,2
11.5
100.0
0.069
1.83
1.89
26.2
1,2
11.5
100.0
0.060
1.89
1.97
29.2
1,2
11.6
100.0
0.054
1.97
2.06
33.2
1,2
11.8
100.0
0.049
2.06
2.17
38.2
1,2
11.7
100.0
0.045
2.17
2.30
38.5
1,2
11.8
100.0
0.040
2.30
2.48
39.2
1,2
11.8
99.9
0.038
2.48
2.73
45.0
1,2
11.9
100.0
0.034
2.73
3.12
44.7
1,2
11.7
99.9
0.028
3.12
3.94
51.7
1,2
11.6
100.0
0.023
3.94
50.00
48.7
1,2
11.8
99.1
data collection
HKL-2000
model building
PHENIX
refinement
PHENIX
(phenix.refine: 1.7.1_743)
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
Crystal structure of the metal binding domain (MBD) of the Streptococcus pneumoniae D39 Cu(I) exporting P-type ATPase CopA with Cu(I)
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
SER
47
A
SER
48
HELX_P
A
TYR
50
A
TYR
51
5
1
4
A
GLU
56
A
GLU
57
HELX_P
A
GLY
59
A
GLY
60
5
2
4
metalc
2.161
A
CYS
49
A
SG
CYS
50
1_555
A
CU1
101
B
CU
CU1
1_555
metalc
2.226
A
CYS
49
A
SG
CYS
50
1_555
A
CU1
102
C
CU
CU1
1_555
metalc
2.147
A
CYS
86
A
SG
CYS
87
1_555
A
CU1
101
B
CU
CU1
1_555
metalc
2.304
A
MET
88
A
SD
MET
89
1_555
A
CU1
102
C
CU
CU1
1_555
metalc
2.240
A
MET
90
A
SD
MET
91
1_555
A
CU1
102
C
CU
CU1
1_555
metalc
2.471
A
CU1
102
C
CU
CU1
1_555
A
CL
103
D
CL
CL
1_555
METAL BINDING PROTEIN
cupredoxin fold, Cu(I) binding, METAL BINDING PROTEIN
A
GLY
0
A
GLY
1
1
A
MET
1
A
MET
2
1.83
A
HIS
25
A
HIS
26
1
A
PRO
26
A
PRO
27
-0.14
Q04LG7_STRP2
UNP
1
1
Q04LG7
MTEIVKASLENGIQKIRIQAEKGYHPAHIQLQKGIPAEITFHRATPSNCYKEILFEEEGILEPIGVDEEKVIRFTPQELG
RHEFSCGMKMQKGSYTVVE
1
99
4F2F
1
99
Q04LG7
A
1
2
100
1
cloning artifact
GLY
0
4F2F
A
Q04LG7
UNP
1
6
3
4
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
VAL
5
A
VAL
6
A
LYS
6
A
LYS
7
A
HIS
28
A
HIS
29
A
GLN
32
A
GLN
33
A
LYS
92
A
LYS
93
A
VAL
98
A
VAL
99
A
GLY
80
A
GLY
81
A
CYS
86
A
CYS
87
A
GLU
52
A
GLU
53
A
PHE
55
A
PHE
56
A
ILE
60
A
ILE
61
A
PRO
63
A
PRO
64
A
SER
8
A
SER
9
A
GLU
10
A
GLU
11
A
ILE
13
A
ILE
14
A
ALA
20
A
ALA
21
A
TYR
24
A
TYR
25
A
HIS
25
A
HIS
26
A
SER
8
A
SER
9
A
GLU
10
A
GLU
11
A
ILE
13
A
ILE
14
A
ALA
20
A
ALA
21
A
ALA
37
A
ALA
38
A
ARG
43
A
ARG
44
A
GLU
69
A
GLU
70
A
PHE
74
A
PHE
75
BINDING SITE FOR RESIDUE CU1 A 101
A
CU1
101
Software
3
BINDING SITE FOR RESIDUE CU1 A 102
A
CU1
102
Software
5
BINDING SITE FOR RESIDUE CL A 103
A
CL
103
Software
4
A
CYS
49
A
CYS
50
3
1_555
A
CYS
86
A
CYS
87
3
1_555
A
CU1
102
C
CU1
3
1_555
A
CYS
49
A
CYS
50
5
1_555
A
MET
88
A
MET
89
5
1_555
A
MET
90
A
MET
91
5
1_555
A
CU1
101
B
CU1
5
1_555
A
CL
103
D
CL
5
1_555
A
CYS
49
A
CYS
50
4
1_555
A
MET
88
A
MET
89
4
1_555
A
MET
90
A
MET
91
4
1_555
A
CU1
102
C
CU1
4
1_555
19
P 21 21 21