0.017566 0.010142 0.000000 0.000000 0.020284 0.000000 0.000000 0.000000 0.004123 0.000000 0.000000 0.000000 Vandevenne, M.S. Jacques, D.A. Guss, J.M. Mackay, J.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 56.928 56.928 242.542 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 R C N 60 N C N 61 N O N 62 N C N 63 N S N 64 N O N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C Y 84 N N Y 85 N C Y 86 N N Y 87 N C Y 88 N C N 89 N N Y 90 N N Y 91 N C Y 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N N N 126 N C N 127 N C N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N O N 143 N P N 144 N O N 145 N O N 146 N O N 147 N C N 148 R C N 149 N O N 150 S C N 151 N O N 152 N C N 153 R C Y 154 N N Y 155 N C Y 156 N N Y 157 N C N 158 N C N 159 N O N 160 N N N 161 N C N 162 N N N 163 N N Y 164 N C N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N O N 180 N P N 181 N O N 182 N O N 183 N O N 184 N C N 185 R C N 186 N O N 187 S C N 188 N O N 189 N C N 190 R C N 191 N N N 192 N C N 193 N O N 194 N N N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N O N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N O N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 N C N 256 N C N 257 N O N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C Y 269 N C Y 270 N N Y 271 N C Y 272 N C Y 273 N N N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 S C N 290 N C N 291 N C N 292 N C N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N C N 313 N C N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 N C N 334 N C N 335 N C N 336 N C N 337 N N N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C N 399 N O N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 R C N 413 N O N 414 N C N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N N N 426 S C N 427 N C N 428 N O N 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C N 436 N O N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing Y 91 N sing Y 92 N sing Y 93 N doub N 94 N sing Y 95 N sing Y 96 N sing Y 97 N doub N 98 N sing Y 99 N doub N 100 N sing N 101 N sing Y 102 N sing Y 103 N doub N 104 N sing Y 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N sing Y 166 N doub N 167 N sing Y 168 N sing N 169 N sing Y 170 N doub N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing Y 274 N sing Y 275 N doub Y 276 N doub N 277 N sing Y 278 N sing N 279 N sing Y 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing Y 430 N doub Y 431 N sing Y 432 N sing N 433 N sing Y 434 N doub N 435 N sing Y 436 N doub N 437 N sing Y 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 288 10616 10627 10.1074/jbc.M112.441451 23436653 New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217 2013 10.2210/pdb4f2j/pdb pdb_00004f2j 100 1 100 2 IMAGE PLATE 2011-09-06 MAR scanner 345 mm plate IMAGE PLATE 2011-09-15 MAR scanner 345 mm plate OSMIC VARIMAX SINGLE WAVELENGTH M x-ray 1 OSMIC VARIMAX SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 28.64 79317 0.097 1.06 2.630 50.000 7637 99.50 10.40 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 HF 6123.977 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3' 1 syn polymer 6848.725 Zinc finger protein 217 Zinc fingers 6 and 7 (UNP RESIDUES 469-523) 1 man polymer 65.409 ZINC ION 2 syn non-polymer transcription factor ZnF217 no no (DT)(DT)(DT)(DG)(DC)(DA)(DG)(DA)(DA)(DT)(DC)(DG)(DA)(DT)(DT)(DC)(DT)(DG)(DC)(DA) TTTGCAGAATCGATTCTGCA A polydeoxyribonucleotide no no GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample ZNF217, ZABC1 9606 Homo sapiens 562 Escherichia coli Rosetta 2 plasmid pMAL 2 4.37 71.87 0.834 VAPOR DIFFUSION, HANGING DROP 7.0 20% PEG 3350, 0.2M Sodium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 VAPOR DIFFUSION, HANGING DROP 7.0 20% PEG 3350, 0.2M Sodium sulfate, 10mM Trimethyllead acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 -3.156 1 20 A 2 A 19 -0.762 A_DT2:DA19_A 1 -11.517 -0.853 -0.017 -0.104 -7.495 1 19 A 3 A 18 -1.373 A_DG3:DC18_A 2 -7.878 -0.018 -0.380 -0.277 -3.426 1 19 A 4 A 17 -7.147 A_DC4:DG17_A 3 -0.831 -0.272 0.243 -0.123 6.936 1 20 A 5 A 16 -6.511 A_DA5:DT16_A 4 -0.915 -0.691 -0.026 0.129 10.291 1 19 A 6 A 15 -2.143 A_DG6:DC15_A 5 3.508 0.328 0.092 -0.059 0.004 1 20 A 7 A 14 -5.769 A_DA7:DT14_A 6 -4.760 0.498 0.598 -0.083 3.798 1 20 A 8 A 13 -5.410 A_DA8:DT13_A 7 -16.264 -0.358 0.369 -0.599 7.896 1 20 A 9 A 12 -1.860 A_DT9:DA12_A 8 -17.938 -0.938 -0.110 -0.365 -0.711 1 19 A 10 A 11 -1.519 A_DC10:DG11_A 9 -14.180 0.020 0.154 -0.502 0.711 1 19 A 11 A 10 -1.519 A_DG11:DC10_A 10 -14.180 -0.020 0.154 -0.502 -7.896 1 20 A 12 A 9 -1.860 A_DA12:DT9_A 11 -17.938 0.938 -0.110 -0.365 -3.798 1 20 A 13 A 8 -5.410 A_DT13:DA8_A 12 -16.264 0.358 0.369 -0.599 -0.004 1 20 A 14 A 7 -5.769 A_DT14:DA7_A 13 -4.760 -0.498 0.598 -0.083 -10.291 1 19 A 15 A 6 -2.143 A_DC15:DG6_A 14 3.508 -0.328 0.092 -0.059 -6.936 1 20 A 16 A 5 -6.511 A_DT16:DA5_A 15 -0.915 0.691 -0.026 0.129 3.426 1 19 A 17 A 4 -7.147 A_DG17:DC4_A 16 -0.831 0.272 0.243 -0.123 7.495 1 19 A 18 A 3 -1.373 A_DC18:DG3_A 17 -7.878 0.018 -0.380 -0.277 3.156 1 20 A 19 A 2 -0.762 A_DA19:DT2_A 18 -11.517 0.853 -0.017 -0.104 3.448 31.764 A A 2 3 7.393 A A 19 18 3.582 4.032 0.076 -0.818 AA_DT2DG3:DC18DA19_AA 1 2.486 -4.559 31.418 -2.293 0.354 3.328 31.121 A A 3 4 0.635 A A 18 17 3.226 0.339 -0.898 -0.129 AA_DG3DC4:DG17DC18_AA 2 -5.161 9.662 30.698 -0.306 0.679 3.087 34.749 A A 4 5 1.108 A A 17 16 2.975 0.657 0.825 0.422 AA_DC4DA5:DT16DG17_AA 3 7.024 -11.838 34.047 0.613 -0.376 3.171 39.850 A A 5 6 -4.199 A A 16 15 3.169 -2.859 0.810 -0.350 AA_DA5DG6:DC15DT16_AA 4 -0.716 1.052 39.745 -0.193 -1.269 3.585 43.573 A A 6 7 -1.791 A A 15 14 3.541 -1.326 -0.422 -0.703 AA_DG6DA7:DT14DC15_AA 5 -4.975 6.716 43.283 -0.808 0.045 3.204 31.357 A A 7 8 -10.879 A A 14 13 3.187 -5.847 -0.039 -0.386 AA_DA7DA8:DT13DT14_AA 6 -0.614 1.143 30.814 0.371 -0.042 3.185 29.519 A A 8 9 -8.780 A A 13 12 3.068 -4.450 0.271 -0.946 AA_DA8DT9:DA12DT13_AA 7 2.998 -5.915 29.038 -0.944 0.082 3.348 37.388 A A 9 10 10.500 A A 12 11 3.471 6.682 -0.511 -0.613 AA_DT9DC10:DG11DA12_AA 8 -4.465 7.016 36.544 -1.884 0.177 3.491 36.775 A A 10 11 6.547 A A 11 10 3.447 4.123 0.000 0.588 AA_DC10DG11:DC10DG11_AA 9 0.000 0.000 36.551 0.335 0.000 3.348 37.388 A A 11 12 10.500 A A 10 9 3.471 6.682 0.511 -0.613 AA_DG11DA12:DT9DC10_AA 10 4.465 -7.016 36.544 -1.884 -0.177 3.185 29.519 A A 12 13 -8.780 A A 9 8 3.068 -4.450 -0.271 -0.946 AA_DA12DT13:DA8DT9_AA 11 -2.998 5.915 29.038 -0.944 -0.082 3.204 31.357 A A 13 14 -10.879 A A 8 7 3.187 -5.847 0.039 -0.386 AA_DT13DT14:DA7DA8_AA 12 0.614 -1.143 30.814 0.371 0.042 3.585 43.573 A A 14 15 -1.791 A A 7 6 3.541 -1.326 0.422 -0.703 AA_DT14DC15:DG6DA7_AA 13 4.975 -6.716 43.283 -0.808 -0.045 3.171 39.850 A A 15 16 -4.199 A A 6 5 3.169 -2.859 -0.810 -0.350 AA_DC15DT16:DA5DG6_AA 14 0.716 -1.052 39.745 -0.193 1.269 3.087 34.749 A A 16 17 1.108 A A 5 4 2.975 0.657 -0.825 0.422 AA_DT16DG17:DC4DA5_AA 15 -7.024 11.839 34.047 0.613 0.376 3.328 31.121 A A 17 18 0.635 A A 4 3 3.226 0.339 0.898 -0.129 AA_DG17DC18:DG3DC4_AA 16 5.161 -9.662 30.698 -0.306 -0.679 3.448 31.764 A A 18 19 7.393 A A 3 2 3.582 4.032 -0.076 -0.818 AA_DC18DA19:DT2DG3_AA 17 -2.486 4.559 31.418 -2.293 -0.354 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2013-02-27 1 1 2013-09-04 1 2 2024-03-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structure of ZNF217 bound to DNA RCSB Y PDBJ 2012-05-08 REL REL 0.047 0.913 99.80 13.60 0.076 1.098 100.00 14.80 0.107 1.057 100.00 15.30 0.132 1.165 100.00 15.20 0.146 1.017 100.00 15.60 0.174 1.066 100.00 15.40 0.227 1.081 100.00 15.90 0.242 1.028 100.00 16.00 0.370 1.081 100.00 15.30 0.229 1.092 99.20 7.20 0.131 1.040 98.10 6.10 0.194 1.077 98.90 6.00 0.381 1.059 98.10 5.90 0.528 1.092 99.20 5.90 0.628 1.083 99.20 6.10 0.629 1.070 99.20 5.80 0.662 1.094 99.20 6.00 0.736 1.084 100.00 5.70 0.541 1.075 99.70 5.90 0.447 1.033 99.50 5.90 ZN ZINC ION ZN 967 3 ZN ZN 601 C ZN 968 3 ZN ZN 602 C 0.570 0.550 0.620 7411 5383 2028 0.880 0.900 0.850 1026 653 373 0.800 0.810 0.780 1237 882 355 0.670 0.680 0.650 1245 938 307 0.380 0.370 0.390 2183 1680 503 0.250 0.250 0.240 1348 1076 272 DT 0 n 1 DT 0 A DT 1 n 2 DT 1 A DT 2 n 3 DT 2 A DG 3 n 4 DG 3 A DC 4 n 5 DC 4 A DA 5 n 6 DA 5 A DG 6 n 7 DG 6 A DA 7 n 8 DA 7 A DA 8 n 9 DA 8 A DT 9 n 10 DT 9 A DC 10 n 11 DC 10 A DG 11 n 12 DG 11 A DA 12 n 13 DA 12 A DT 13 n 14 DT 13 A DT 14 n 15 DT 14 A DC 15 n 16 DC 15 A DT 16 n 17 DT 16 A DG 17 n 18 DG 17 A DC 18 n 19 DC 18 A DA 19 n 20 DA 19 A n 1 467 C n 2 468 C n 3 469 C n 4 470 C ARG 471 n 5 ARG 471 C GLU 472 n 6 GLU 472 C CYS 473 n 7 CYS 473 C SER 474 n 8 SER 474 C TYR 475 n 9 TYR 475 C CYS 476 n 10 CYS 476 C GLY 477 n 11 GLY 477 C LYS 478 n 12 LYS 478 C PHE 479 n 13 PHE 479 C PHE 480 n 14 PHE 480 C ARG 481 n 15 ARG 481 C SER 482 n 16 SER 482 C ASN 483 n 17 ASN 483 C TYR 484 n 18 TYR 484 C TYR 485 n 19 TYR 485 C LEU 486 n 20 LEU 486 C ASN 487 n 21 ASN 487 C ILE 488 n 22 ILE 488 C HIS 489 n 23 HIS 489 C LEU 490 n 24 LEU 490 C ARG 491 n 25 ARG 491 C THR 492 n 26 THR 492 C HIS 493 n 27 HIS 493 C THR 494 n 28 THR 494 C GLY 495 n 29 GLY 495 C GLU 496 n 30 GLU 496 C LYS 497 n 31 LYS 497 C PRO 498 n 32 PRO 498 C TYR 499 n 33 TYR 499 C LYS 500 n 34 LYS 500 C CYS 501 n 35 CYS 501 C GLU 502 n 36 GLU 502 C PHE 503 n 37 PHE 503 C CYS 504 n 38 CYS 504 C GLU 505 n 39 GLU 505 C TYR 506 n 40 TYR 506 C ALA 507 n 41 ALA 507 C ALA 508 n 42 ALA 508 C ALA 509 n 43 ALA 509 C GLN 510 n 44 GLN 510 C LYS 511 n 45 LYS 511 C THR 512 n 46 THR 512 C SER 513 n 47 SER 513 C LEU 514 n 48 LEU 514 C ARG 515 n 49 ARG 515 C TYR 516 n 50 TYR 516 C HIS 517 n 51 HIS 517 C LEU 518 n 52 LEU 518 C GLU 519 n 53 GLU 519 C ARG 520 n 54 ARG 520 C HIS 521 n 55 HIS 521 C HIS 522 n 56 HIS 522 C n 57 523 C 8.1461 5.1317 9.1287 4.6998 5.3321 14.5824 0.0514 0.1885 -0.3932 -0.0394 0.0519 0.0358 1.2167 0.1555 -0.1034 0.4927 0.2084 0.0015 0.3269 -0.0822 0.5350 refined 31.2256 38.2133 38.2300 X-RAY DIFFRACTION 7.4251 0.0596 -2.5538 9.3960 4.3468 27.8988 -0.3465 -0.5084 0.0928 -0.1847 -0.4259 0.7424 -0.2368 -2.0778 0.7723 0.4751 -0.1111 -0.1624 0.6739 -0.1764 0.5634 refined 18.1557 42.2507 30.4185 X-RAY DIFFRACTION A 0 A 19 X-RAY DIFFRACTION 1 C 471 C 522 X-RAY DIFFRACTION 2 C 601 C 602 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 4 tetrameric 5120 -35 13010 C CYS 473 B SG CYS 7 1_555 C ZN 602 D ZN ZN 1_555 C CYS 476 B SG CYS 10 1_555 106.7 C CYS 473 B SG CYS 7 1_555 C ZN 602 D ZN ZN 1_555 C HIS 489 B NE2 HIS 23 1_555 101.5 C CYS 476 B SG CYS 10 1_555 C ZN 602 D ZN ZN 1_555 C HIS 489 B NE2 HIS 23 1_555 109.8 C CYS 473 B SG CYS 7 1_555 C ZN 602 D ZN ZN 1_555 C HIS 493 B NE2 HIS 27 1_555 90.3 C CYS 476 B SG CYS 10 1_555 C ZN 602 D ZN ZN 1_555 C HIS 493 B NE2 HIS 27 1_555 136.0 C HIS 489 B NE2 HIS 23 1_555 C ZN 602 D ZN ZN 1_555 C HIS 493 B NE2 HIS 27 1_555 105.9 C CYS 501 B SG CYS 35 1_555 C ZN 601 C ZN ZN 1_555 C CYS 504 B SG CYS 38 1_555 119.0 C CYS 501 B SG CYS 35 1_555 C ZN 601 C ZN ZN 1_555 C HIS 517 B NE2 HIS 51 1_555 108.2 C CYS 504 B SG CYS 38 1_555 C ZN 601 C ZN ZN 1_555 C HIS 517 B NE2 HIS 51 1_555 111.6 C CYS 501 B SG CYS 35 1_555 C ZN 601 C ZN ZN 1_555 C HIS 522 B NE2 HIS 56 1_555 110.2 C CYS 504 B SG CYS 38 1_555 C ZN 601 C ZN ZN 1_555 C HIS 522 B NE2 HIS 56 1_555 123.5 C HIS 517 B NE2 HIS 51 1_555 C ZN 601 C ZN ZN 1_555 C HIS 522 B NE2 HIS 56 1_555 75.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 9_765 -x+2,-x+y+1,-z+1/3 crystal symmetry operation 85.3920000000 49.3010941866 80.8473333333 C N TYR 499 B N TYR 33 C O ALA 508 B O ALA 42 1 C GLY 467 B GLY 1 1 Y 1 C SER 468 B SER 2 1 Y 1 C SER 469 B SER 3 1 Y 1 C SER 470 B SER 4 1 Y 1 C LYS 523 B LYS 57 1 Y 1 7.79 1.20 119.70 127.49 A A A C3' O3' P DT DT DT 0 0 1 Y 1 -2.49 0.40 104.50 102.01 A A A O4' C4' C3' DG DG DG 3 3 3 N 1 11.22 1.20 119.70 130.92 A A A C3' O3' P DA DA DG 5 5 6 Y 1 -6.07 0.80 105.90 99.83 A A A O4' C1' C2' DG DG DG 6 6 6 N 1 4.52 0.30 108.30 112.82 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -7.59 0.70 108.00 100.41 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 -5.12 0.80 109.40 104.28 A A A O5' C5' C4' DA DA DA 8 8 8 N 1 -6.98 1.00 110.10 103.12 A A A C1' O4' C4' DA DA DA 8 8 8 N 1 -4.55 0.70 108.00 103.45 A A A O4' C1' N9 DA DA DA 8 8 8 N 1 -2.57 0.40 104.50 101.93 A A A O4' C4' C3' DA DA DA 12 12 12 N 1 -6.19 0.80 105.90 99.71 A A A O4' C1' C2' DA DA DA 12 12 12 N 1 -3.98 0.60 118.60 114.62 A A A C6 N1 C2 DA DA DA 12 12 12 N 1 -4.34 0.70 132.30 127.96 A A A C6 C5 N7 DA DA DA 12 12 12 N 1 5.90 0.60 118.60 124.50 A A A N1 C6 N6 DA DA DA 12 12 12 N 1 -7.28 0.80 123.70 116.42 A A A C5 C6 N6 DA DA DA 12 12 12 N 1 -10.95 0.40 104.50 93.55 A A A O4' C4' C3' DT DT DT 13 13 13 N 1 -5.80 0.80 105.90 100.10 A A A O4' C1' C2' DT DT DT 13 13 13 N 1 -4.44 0.60 127.20 122.76 A A A C2 N3 C4 DT DT DT 13 13 13 N 1 5.99 0.60 119.90 125.89 A A A N3 C4 O4 DT DT DT 13 13 13 N 1 -7.28 0.70 124.90 117.62 A A A C5 C4 O4 DT DT DT 13 13 13 N 1 8.38 1.10 110.50 118.88 A A A O3' P OP2 DT DT DT 13 14 14 Y 1 9.49 1.20 110.70 120.19 A A A O5' P OP1 DT DT DT 14 14 14 N 1 -6.99 0.90 105.70 98.71 A A A O5' P OP2 DT DT DT 14 14 14 N 1 -5.55 0.80 102.40 96.85 A A A C3' C2' C1' DT DT DT 14 14 14 N 1 -6.01 0.40 104.50 98.49 A A A O4' C4' C3' DC DC DC 15 15 15 N 1 -5.96 0.70 102.20 96.24 A A A C4' C3' C2' DC DC DC 15 15 15 N 1 -3.81 0.40 104.50 100.69 A A A O4' C4' C3' DT DT DT 16 16 16 N 1 4.01 0.60 119.90 123.91 A A A N3 C4 O4 DT DT DT 16 16 16 N 1 -4.68 0.60 119.00 114.32 A A A C4 C5 C7 DT DT DT 16 16 16 N 1 A A O3' C3' DC DC 10 10 -0.059 0.006 1.419 1.360 N 1 A A C2 N3 DT DT 13 13 0.061 0.008 1.373 1.434 N 1 A A O3' C3' DC DC 15 15 -0.048 0.006 1.419 1.371 N 1 A A C1' N1 DT DT 16 16 0.088 0.013 1.488 1.576 N 1 A C OP1 NH2 DG ARG 11 520 1.99 1_555 9_765 1 C ARG 481 -47.35 -16.51 68.690 96.517 2.000 5.3100 2.6600 0.0000 5.3100 0.0000 -7.9700 0.9240 0.9690 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES 0.2643 0.2523 0.2529 2.6400 48.3100 344 7467 7467 4.6000 99.0400 0.2778 0.2563 1.000 1.000 0.7219 32.1210 0.2850 0.3269 0.2467 RANDOM 1,2 THROUGHOUT 0.000 SIRAS 0.3270 0.2470 0.8000 0.8000 1.4000 MAXIMUM LIKELIHOOD MASK 2.6400 48.3100 0 857 2 406 449 0.016 0.021 917 0.002 0.020 515 2.318 2.489 1319 1.125 3.000 1253 5.450 5.000 51 29.747 21.111 27 16.056 15.000 79 14.995 15.000 5 0.083 0.200 137 0.008 0.020 723 0.001 0.020 159 2.263 2.000 258 0.569 2.000 104 3.819 3.000 411 8.122 4.000 659 10.185 6.000 908 0.4200 0.4220 2.7090 22 508 530 20 99.0700 2.640 99.000 4F2J 7517 7517 0.00 0.00 0.091 3.235 1,2 9.300 2.500 98.500 0.188 2.640 2.680 344 0.923 1,2 1.800 95.000 0.248 2.680 2.730 368 0.883 1,2 1.800 99.500 0.305 2.730 2.790 348 0.840 1,2 1.800 99.400 0.232 2.790 2.840 379 0.919 1,2 1.800 99.000 0.281 2.840 2.900 349 0.913 1,2 1.700 99.100 0.265 2.900 2.970 370 0.968 1,2 1.800 98.900 0.208 2.970 3.050 352 0.992 1,2 1.800 99.200 0.149 3.050 3.130 369 0.887 1,2 1.700 98.900 0.068 3.130 3.220 364 0.957 1,2 1.800 98.600 0.043 3.220 3.320 368 0.975 1,2 1.700 98.700 0.035 3.320 3.440 357 0.795 1,2 1.700 98.100 0.234 3.440 3.580 387 3.221 1,2 3.300 99.200 0.094 3.580 3.740 364 1.380 1,2 3.500 99.500 0.092 3.740 3.940 377 1.375 1,2 3.400 99.200 0.080 3.940 4.190 384 1.720 1,2 3.300 99.000 0.068 4.190 4.510 378 1.884 1,2 3.300 99.200 0.065 4.510 4.970 393 2.398 1,2 3.300 98.700 0.059 4.970 5.680 398 2.943 1,2 3.200 98.800 0.051 5.680 7.160 412 3.771 1,2 3.100 98.300 0.108 7.160 99.000 456 20.035 1,2 2.800 94.000 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE program phasing Thomas C. Terwilliger terwilliger@lanl.gov 20-Mar-2010 http://www.solve.lanl.gov/ RESOLVE program 2.15 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection MAR345dtb Crystal structure of ZNF217 bound to DNA, P6522 crystal form 1 N N 2 N N 3 N N 3 N N C SER 482 B SER 16 HELX_P C GLY 495 B GLY 29 1 1 14 C GLN 510 B GLN 44 HELX_P C HIS 522 B HIS 56 1 2 13 metalc 2.022 C CYS 473 B SG CYS 7 1_555 C ZN 602 D ZN ZN 1_555 metalc 2.288 C CYS 476 B SG CYS 10 1_555 C ZN 602 D ZN ZN 1_555 metalc 2.000 C HIS 489 B NE2 HIS 23 1_555 C ZN 602 D ZN ZN 1_555 metalc 1.981 C HIS 493 B NE2 HIS 27 1_555 C ZN 602 D ZN ZN 1_555 metalc 2.050 C CYS 501 B SG CYS 35 1_555 C ZN 601 C ZN ZN 1_555 metalc 2.028 C CYS 504 B SG CYS 38 1_555 C ZN 601 C ZN ZN 1_555 metalc 2.143 C HIS 517 B NE2 HIS 51 1_555 C ZN 601 C ZN ZN 1_555 metalc 2.340 C HIS 522 B NE2 HIS 56 1_555 C ZN 601 C ZN ZN 1_555 hydrog WATSON-CRICK A DT 2 A N3 DT 3 1_555 A DA 19 A N1 DA 20 9_765 hydrog WATSON-CRICK A DT 2 A O4 DT 3 1_555 A DA 19 A N6 DA 20 9_765 hydrog WATSON-CRICK A DG 3 A N1 DG 4 1_555 A DC 18 A N3 DC 19 9_765 hydrog WATSON-CRICK A DG 3 A N2 DG 4 1_555 A DC 18 A O2 DC 19 9_765 hydrog WATSON-CRICK A DG 3 A O6 DG 4 1_555 A DC 18 A N4 DC 19 9_765 hydrog WATSON-CRICK A DC 4 A N3 DC 5 1_555 A DG 17 A N1 DG 18 9_765 hydrog WATSON-CRICK A DC 4 A N4 DC 5 1_555 A DG 17 A O6 DG 18 9_765 hydrog WATSON-CRICK A DC 4 A O2 DC 5 1_555 A DG 17 A N2 DG 18 9_765 hydrog WATSON-CRICK A DA 5 A N1 DA 6 1_555 A DT 16 A N3 DT 17 9_765 hydrog WATSON-CRICK A DA 5 A N6 DA 6 1_555 A DT 16 A O4 DT 17 9_765 hydrog WATSON-CRICK A DG 6 A N1 DG 7 1_555 A DC 15 A N3 DC 16 9_765 hydrog WATSON-CRICK A DG 6 A N2 DG 7 1_555 A DC 15 A O2 DC 16 9_765 hydrog WATSON-CRICK A DG 6 A O6 DG 7 1_555 A DC 15 A N4 DC 16 9_765 hydrog WATSON-CRICK A DA 7 A N1 DA 8 1_555 A DT 14 A N3 DT 15 9_765 hydrog WATSON-CRICK A DA 7 A N6 DA 8 1_555 A DT 14 A O4 DT 15 9_765 hydrog WATSON-CRICK A DA 8 A N1 DA 9 1_555 A DT 13 A N3 DT 14 9_765 hydrog WATSON-CRICK A DA 8 A N6 DA 9 1_555 A DT 13 A O4 DT 14 9_765 hydrog WATSON-CRICK A DT 9 A N3 DT 10 1_555 A DA 12 A N1 DA 13 9_765 hydrog WATSON-CRICK A DT 9 A O4 DT 10 1_555 A DA 12 A N6 DA 13 9_765 hydrog WATSON-CRICK A DC 10 A N3 DC 11 1_555 A DG 11 A N1 DG 12 9_765 hydrog WATSON-CRICK A DC 10 A N4 DC 11 1_555 A DG 11 A O6 DG 12 9_765 hydrog WATSON-CRICK A DC 10 A O2 DC 11 1_555 A DG 11 A N2 DG 12 9_765 hydrog WATSON-CRICK A DG 11 A N1 DG 12 1_555 A DC 10 A N3 DC 11 9_765 hydrog WATSON-CRICK A DG 11 A N2 DG 12 1_555 A DC 10 A O2 DC 11 9_765 hydrog WATSON-CRICK A DG 11 A O6 DG 12 1_555 A DC 10 A N4 DC 11 9_765 hydrog WATSON-CRICK A DA 12 A N1 DA 13 1_555 A DT 9 A N3 DT 10 9_765 hydrog WATSON-CRICK A DA 12 A N6 DA 13 1_555 A DT 9 A O4 DT 10 9_765 hydrog WATSON-CRICK A DT 13 A N3 DT 14 1_555 A DA 8 A N1 DA 9 9_765 hydrog WATSON-CRICK A DT 13 A O4 DT 14 1_555 A DA 8 A N6 DA 9 9_765 hydrog WATSON-CRICK A DT 14 A N3 DT 15 1_555 A DA 7 A N1 DA 8 9_765 hydrog WATSON-CRICK A DT 14 A O4 DT 15 1_555 A DA 7 A N6 DA 8 9_765 hydrog WATSON-CRICK A DC 15 A N3 DC 16 1_555 A DG 6 A N1 DG 7 9_765 hydrog WATSON-CRICK A DC 15 A N4 DC 16 1_555 A DG 6 A O6 DG 7 9_765 hydrog WATSON-CRICK A DC 15 A O2 DC 16 1_555 A DG 6 A N2 DG 7 9_765 hydrog WATSON-CRICK A DT 16 A N3 DT 17 1_555 A DA 5 A N1 DA 6 9_765 hydrog WATSON-CRICK A DT 16 A O4 DT 17 1_555 A DA 5 A N6 DA 6 9_765 hydrog WATSON-CRICK A DG 17 A N1 DG 18 1_555 A DC 4 A N3 DC 5 9_765 hydrog WATSON-CRICK A DG 17 A N2 DG 18 1_555 A DC 4 A O2 DC 5 9_765 hydrog WATSON-CRICK A DG 17 A O6 DG 18 1_555 A DC 4 A N4 DC 5 9_765 hydrog WATSON-CRICK A DC 18 A N3 DC 19 1_555 A DG 3 A N1 DG 4 9_765 hydrog WATSON-CRICK A DC 18 A N4 DC 19 1_555 A DG 3 A O6 DG 4 9_765 hydrog WATSON-CRICK A DC 18 A O2 DC 19 1_555 A DG 3 A N2 DG 4 9_765 hydrog WATSON-CRICK A DA 19 A N1 DA 20 1_555 A DT 2 A N3 DT 3 9_765 hydrog WATSON-CRICK A DA 19 A N6 DA 20 1_555 A DT 2 A O4 DT 3 9_765 METAL BINDING PROTEIN/DNA Zinc Finger, Transcription Factor, DNA Binding, Nucleus, METAL BINDING PROTEIN-DNA complex ZN217_HUMAN UNP 2 469 O75362 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 4F2J PDB 1 4F2J 469 523 4F2J 469 523 O75362 C 1 3 57 0 19 4F2J 0 19 4F2J A 2 1 20 1 expression tag GLY 467 4F2J C O75362 UNP 1 1 expression tag SER 468 4F2J C O75362 UNP 2 2 anti-parallel C TYR 499 B TYR 33 C LYS 500 B LYS 34 C ALA 507 B ALA 41 C ALA 508 B ALA 42 BINDING SITE FOR RESIDUE ZN C 601 C ZN 601 Software 4 BINDING SITE FOR RESIDUE ZN C 602 C ZN 602 Software 4 C CYS 501 B CYS 35 4 1_555 C CYS 504 B CYS 38 4 1_555 C HIS 517 B HIS 51 4 1_555 C HIS 522 B HIS 56 4 1_555 C CYS 473 B CYS 7 4 1_555 C CYS 476 B CYS 10 4 1_555 C HIS 489 B HIS 23 4 1_555 C HIS 493 B HIS 27 4 1_555 179 P 65 2 2