0.011616
0.000000
0.000000
0.000000
0.017871
0.000000
0.000000
0.000000
0.016212
0.00000
0.00000
0.00000
Cheng, J.
Goldstein, R.
Stec, B.
Gershenson, A.
Roberts, M.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
86.088
55.957
61.681
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
S
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
O
N
109
N
O
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
Y
135
N
C
Y
136
N
N
Y
137
N
C
Y
138
N
C
Y
139
N
N
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
S
C
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
C
N
229
N
S
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
Y
251
N
C
Y
252
N
C
Y
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
O
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
R
C
N
302
N
O
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
N
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
N
352
N
O
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
Y
133
N
sing
Y
134
N
doub
Y
135
N
doub
N
136
N
sing
Y
137
N
sing
N
138
N
sing
Y
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
Y
241
N
doub
Y
242
N
sing
Y
243
N
sing
N
244
N
sing
Y
245
N
doub
N
246
N
sing
Y
247
N
doub
N
248
N
sing
Y
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
Y
315
N
sing
Y
316
N
sing
N
317
N
sing
Y
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
287
40317
40327
10.1074/jbc.M112.395277
23038258
Competition between Anion Binding and Dimerization Modulates Staphylococcus aureus Phosphatidylinositol-specific Phospholipase C Enzymatic Activity.
2012
10.2210/pdb4f2t/pdb
pdb_00004f2t
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
120
1
Osmic VariMax
IMAGE PLATE
2012-01-24
RIGAKU RAXIS IV++
Osmic VariMax
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU MICROMAX-007 HF
35166.047
1-phosphatidylinositol phosphodiesterase
4.6.1.13
UNP residues 11-312
Y253S
1
man
polymer
59.044
ACETATE ION
3
syn
non-polymer
18.015
water
103
nat
water
Phosphatidylinositol diacylglycerol-lyase, Phosphatidylinositol-specific phospholipase C, PI-PLC
no
no
SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHH
GMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGK
IVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFL
SVASGGSAFNSTSNYASHINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNKLEHHHHHH
SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHH
GMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGK
IVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFL
SVASGGSAFNSTSNYASHINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNKLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Newman
sample
plc, NWMN_0041
426430
Staphylococcus aureus subsp. aureus
562
Escherichia coli
1
2.11
41.77
VAPOR DIFFUSION, HANGING DROP
4.6
16% PEG 4000, 0.150 M ammonium acetate, 0.100 M sodium acetate, 0.100 M magnesium nitrate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-12-12
1
1
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
acidic form
basic form
H258Y mutant
dimer
RCSB
Y
RCSB
2012-05-08
REL
REL
ACT
ACETATE ION
HOH
water
3V18
PDB ENTRY 3V18
PDB
experimental model
ACT
1
2
ACT
ACT
401
A
ACT
2
2
ACT
ACT
402
A
ACT
3
2
ACT
ACT
403
A
HOH
1
3
HOH
HOH
501
A
HOH
2
3
HOH
HOH
502
A
HOH
3
3
HOH
HOH
503
A
HOH
4
3
HOH
HOH
504
A
HOH
5
3
HOH
HOH
505
A
HOH
6
3
HOH
HOH
506
A
HOH
7
3
HOH
HOH
507
A
HOH
8
3
HOH
HOH
508
A
HOH
9
3
HOH
HOH
509
A
HOH
10
3
HOH
HOH
510
A
HOH
13
3
HOH
HOH
511
A
HOH
14
3
HOH
HOH
512
A
HOH
15
3
HOH
HOH
513
A
HOH
16
3
HOH
HOH
514
A
HOH
17
3
HOH
HOH
515
A
HOH
18
3
HOH
HOH
516
A
HOH
19
3
HOH
HOH
517
A
HOH
20
3
HOH
HOH
518
A
HOH
21
3
HOH
HOH
519
A
HOH
22
3
HOH
HOH
520
A
HOH
23
3
HOH
HOH
521
A
HOH
24
3
HOH
HOH
522
A
HOH
26
3
HOH
HOH
523
A
HOH
27
3
HOH
HOH
524
A
HOH
28
3
HOH
HOH
525
A
HOH
29
3
HOH
HOH
526
A
HOH
30
3
HOH
HOH
527
A
HOH
31
3
HOH
HOH
528
A
HOH
32
3
HOH
HOH
529
A
HOH
33
3
HOH
HOH
530
A
HOH
34
3
HOH
HOH
531
A
HOH
35
3
HOH
HOH
532
A
HOH
36
3
HOH
HOH
533
A
HOH
37
3
HOH
HOH
534
A
HOH
38
3
HOH
HOH
535
A
HOH
39
3
HOH
HOH
536
A
HOH
41
3
HOH
HOH
537
A
HOH
42
3
HOH
HOH
538
A
HOH
43
3
HOH
HOH
539
A
HOH
44
3
HOH
HOH
540
A
HOH
46
3
HOH
HOH
541
A
HOH
48
3
HOH
HOH
542
A
HOH
49
3
HOH
HOH
543
A
HOH
51
3
HOH
HOH
544
A
HOH
52
3
HOH
HOH
545
A
HOH
53
3
HOH
HOH
546
A
HOH
54
3
HOH
HOH
547
A
HOH
55
3
HOH
HOH
548
A
HOH
57
3
HOH
HOH
549
A
HOH
58
3
HOH
HOH
550
A
HOH
59
3
HOH
HOH
551
A
HOH
60
3
HOH
HOH
552
A
HOH
61
3
HOH
HOH
553
A
HOH
62
3
HOH
HOH
554
A
HOH
63
3
HOH
HOH
555
A
HOH
65
3
HOH
HOH
556
A
HOH
67
3
HOH
HOH
557
A
HOH
68
3
HOH
HOH
558
A
HOH
71
3
HOH
HOH
559
A
HOH
72
3
HOH
HOH
560
A
HOH
73
3
HOH
HOH
561
A
HOH
75
3
HOH
HOH
562
A
HOH
78
3
HOH
HOH
563
A
HOH
79
3
HOH
HOH
564
A
HOH
80
3
HOH
HOH
565
A
HOH
84
3
HOH
HOH
566
A
HOH
87
3
HOH
HOH
567
A
HOH
88
3
HOH
HOH
568
A
HOH
93
3
HOH
HOH
569
A
HOH
97
3
HOH
HOH
570
A
HOH
98
3
HOH
HOH
571
A
HOH
99
3
HOH
HOH
572
A
HOH
100
3
HOH
HOH
573
A
HOH
101
3
HOH
HOH
574
A
HOH
102
3
HOH
HOH
575
A
HOH
103
3
HOH
HOH
576
A
HOH
104
3
HOH
HOH
577
A
HOH
105
3
HOH
HOH
578
A
HOH
106
3
HOH
HOH
579
A
HOH
107
3
HOH
HOH
580
A
HOH
108
3
HOH
HOH
581
A
HOH
109
3
HOH
HOH
582
A
HOH
110
3
HOH
HOH
583
A
HOH
111
3
HOH
HOH
584
A
HOH
112
3
HOH
HOH
585
A
HOH
113
3
HOH
HOH
586
A
HOH
114
3
HOH
HOH
587
A
HOH
115
3
HOH
HOH
588
A
HOH
117
3
HOH
HOH
589
A
HOH
118
3
HOH
HOH
590
A
HOH
119
3
HOH
HOH
591
A
HOH
120
3
HOH
HOH
592
A
HOH
121
3
HOH
HOH
593
A
HOH
123
3
HOH
HOH
594
A
HOH
124
3
HOH
HOH
595
A
HOH
125
3
HOH
HOH
596
A
HOH
126
3
HOH
HOH
597
A
HOH
127
3
HOH
HOH
598
A
HOH
128
3
HOH
HOH
599
A
HOH
129
3
HOH
HOH
600
A
HOH
130
3
HOH
HOH
601
A
HOH
131
3
HOH
HOH
602
A
HOH
132
3
HOH
HOH
603
A
n
1
1
A
ASP
2
n
2
ASP
2
A
SER
3
n
3
SER
3
A
LEU
4
n
4
LEU
4
A
SER
5
n
5
SER
5
A
LYS
6
n
6
LYS
6
A
SER
7
n
7
SER
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
ASN
10
n
10
ASN
10
A
TRP
11
n
11
TRP
11
A
MET
12
n
12
MET
12
A
SER
13
n
13
SER
13
A
LYS
14
n
14
LYS
14
A
LEU
15
n
15
LEU
15
A
ASP
16
n
16
ASP
16
A
ASP
17
n
17
ASP
17
A
GLY
18
n
18
GLY
18
A
LYS
19
n
19
LYS
19
A
HIS
20
n
20
HIS
20
A
LEU
21
n
21
LEU
21
A
THR
22
n
22
THR
22
A
GLU
23
n
23
GLU
23
A
ILE
24
n
24
ILE
24
A
ASN
25
n
25
ASN
25
A
ILE
26
n
26
ILE
26
A
PRO
27
n
27
PRO
27
A
GLY
28
n
28
GLY
28
A
SER
29
n
29
SER
29
A
HIS
30
n
30
HIS
30
A
ASP
31
n
31
ASP
31
A
SER
32
n
32
SER
32
A
GLY
33
n
33
GLY
33
A
SER
34
n
34
SER
34
A
PHE
35
n
35
PHE
35
A
THR
36
n
36
THR
36
A
LEU
37
n
37
LEU
37
A
LYS
38
n
38
LYS
38
A
ASP
39
n
39
ASP
39
A
PRO
40
n
40
PRO
40
A
VAL
41
n
41
VAL
41
A
LYS
42
n
42
LYS
42
A
SER
43
n
43
SER
43
A
VAL
44
n
44
VAL
44
A
TRP
45
n
45
TRP
45
A
ALA
46
n
46
ALA
46
A
LYS
47
n
47
LYS
47
A
THR
48
n
48
THR
48
A
GLN
49
n
49
GLN
49
A
ASP
50
n
50
ASP
50
A
LYS
51
n
51
LYS
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
LEU
54
n
54
LEU
54
A
THR
55
n
55
THR
55
A
GLN
56
n
56
GLN
56
A
MET
57
n
57
MET
57
A
LYS
58
n
58
LYS
58
A
SER
59
n
59
SER
59
A
GLY
60
n
60
GLY
60
A
VAL
61
n
61
VAL
61
A
ARG
62
n
62
ARG
62
A
PHE
63
n
63
PHE
63
A
PHE
64
n
64
PHE
64
A
ASP
65
n
65
ASP
65
A
ILE
66
n
66
ILE
66
A
ARG
67
n
67
ARG
67
A
GLY
68
n
68
GLY
68
A
ARG
69
n
69
ARG
69
A
ALA
70
n
70
ALA
70
A
SER
71
n
71
SER
71
A
ALA
72
n
72
ALA
72
A
ASP
73
n
73
ASP
73
A
ASN
74
n
74
ASN
74
A
MET
75
n
75
MET
75
A
ILE
76
n
76
ILE
76
A
SER
77
n
77
SER
77
A
VAL
78
n
78
VAL
78
A
HIS
79
n
79
HIS
79
A
HIS
80
n
80
HIS
80
A
GLY
81
n
81
GLY
81
A
MET
82
n
82
MET
82
A
VAL
83
n
83
VAL
83
A
TYR
84
n
84
TYR
84
A
LEU
85
n
85
LEU
85
A
HIS
86
n
86
HIS
86
A
HIS
87
n
87
HIS
87
A
GLU
88
n
88
GLU
88
A
LEU
89
n
89
LEU
89
A
GLY
90
n
90
GLY
90
A
LYS
91
n
91
LYS
91
A
PHE
92
n
92
PHE
92
A
LEU
93
n
93
LEU
93
A
ASP
94
n
94
ASP
94
A
ASP
95
n
95
ASP
95
A
ALA
96
n
96
ALA
96
A
LYS
97
n
97
LYS
97
A
TYR
98
n
98
TYR
98
A
TYR
99
n
99
TYR
99
A
LEU
100
n
100
LEU
100
A
SER
101
n
101
SER
101
A
ALA
102
n
102
ALA
102
A
TYR
103
n
103
TYR
103
A
PRO
104
n
104
PRO
104
A
ASN
105
n
105
ASN
105
A
GLU
106
n
106
GLU
106
A
THR
107
n
107
THR
107
A
ILE
108
n
108
ILE
108
A
VAL
109
n
109
VAL
109
A
MET
110
n
110
MET
110
A
SER
111
n
111
SER
111
A
MET
112
n
112
MET
112
A
LYS
113
n
113
LYS
113
A
LYS
114
n
114
LYS
114
A
ASP
115
n
115
ASP
115
A
TYR
116
n
116
TYR
116
A
ASP
117
n
117
ASP
117
A
SER
118
n
118
SER
118
A
ASP
119
n
119
ASP
119
A
SER
120
n
120
SER
120
A
LYS
121
n
121
LYS
121
A
VAL
122
n
122
VAL
122
A
THR
123
n
123
THR
123
A
LYS
124
n
124
LYS
124
A
THR
125
n
125
THR
125
A
PHE
126
n
126
PHE
126
A
GLU
127
n
127
GLU
127
A
GLU
128
n
128
GLU
128
A
ILE
129
n
129
ILE
129
A
PHE
130
n
130
PHE
130
A
ARG
131
n
131
ARG
131
A
GLU
132
n
132
GLU
132
A
TYR
133
n
133
TYR
133
A
TYR
134
n
134
TYR
134
A
TYR
135
n
135
TYR
135
A
ASN
136
n
136
ASN
136
A
ASN
137
n
137
ASN
137
A
PRO
138
n
138
PRO
138
A
GLN
139
n
139
GLN
139
A
TYR
140
n
140
TYR
140
A
GLN
141
n
141
GLN
141
A
ASN
142
n
142
ASN
142
A
LEU
143
n
143
LEU
143
A
PHE
144
n
144
PHE
144
A
TYR
145
n
145
TYR
145
A
THR
146
n
146
THR
146
A
GLY
147
n
147
GLY
147
A
SER
148
n
148
SER
148
A
ASN
149
n
149
ASN
149
A
ALA
150
n
150
ALA
150
A
ASN
151
n
151
ASN
151
A
PRO
152
n
152
PRO
152
A
THR
153
n
153
THR
153
A
LEU
154
n
154
LEU
154
A
LYS
155
n
155
LYS
155
A
GLU
156
n
156
GLU
156
A
THR
157
n
157
THR
157
A
LYS
158
n
158
LYS
158
A
GLY
159
n
159
GLY
159
A
LYS
160
n
160
LYS
160
A
ILE
161
n
161
ILE
161
A
VAL
162
n
162
VAL
162
A
LEU
163
n
163
LEU
163
A
PHE
164
n
164
PHE
164
A
ASN
165
n
165
ASN
165
A
ARG
166
n
166
ARG
166
A
MET
167
n
167
MET
167
A
GLY
168
n
168
GLY
168
A
GLY
169
n
169
GLY
169
A
THR
170
n
170
THR
170
A
TYR
171
n
171
TYR
171
A
ILE
172
n
172
ILE
172
A
LYS
173
n
173
LYS
173
A
SER
174
n
174
SER
174
A
GLY
175
n
175
GLY
175
A
TYR
176
n
176
TYR
176
A
GLY
177
n
177
GLY
177
A
ALA
178
n
178
ALA
178
A
ASP
179
n
179
ASP
179
A
THR
180
n
180
THR
180
A
SER
181
n
181
SER
181
A
GLY
182
n
182
GLY
182
A
ILE
183
n
183
ILE
183
A
GLN
184
n
184
GLN
184
A
TRP
185
n
185
TRP
185
A
ALA
186
n
186
ALA
186
A
ASP
187
n
187
ASP
187
A
ASN
188
n
188
ASN
188
A
ALA
189
n
189
ALA
189
A
THR
190
n
190
THR
190
A
PHE
191
n
191
PHE
191
A
GLU
192
n
192
GLU
192
A
THR
193
n
193
THR
193
A
LYS
194
n
194
LYS
194
A
ILE
195
n
195
ILE
195
A
ASN
196
n
196
ASN
196
A
ASN
197
n
197
ASN
197
A
GLY
198
n
198
GLY
198
A
SER
199
n
199
SER
199
A
LEU
200
n
200
LEU
200
A
ASN
201
n
201
ASN
201
A
LEU
202
n
202
LEU
202
A
LYS
203
n
203
LYS
203
A
VAL
204
n
204
VAL
204
A
GLN
205
n
205
GLN
205
A
ASP
206
n
206
ASP
206
A
GLU
207
n
207
GLU
207
A
TYR
208
n
208
TYR
208
A
LYS
209
n
209
LYS
209
A
ASP
210
n
210
ASP
210
A
TYR
211
n
211
TYR
211
A
TYR
212
n
212
TYR
212
A
ASP
213
n
213
ASP
213
A
LYS
214
n
214
LYS
214
A
LYS
215
n
215
LYS
215
A
VAL
216
n
216
VAL
216
A
GLU
217
n
217
GLU
217
A
ALA
218
n
218
ALA
218
A
VAL
219
n
219
VAL
219
A
LYS
220
n
220
LYS
220
A
ASN
221
n
221
ASN
221
A
LEU
222
n
222
LEU
222
A
LEU
223
n
223
LEU
223
A
ALA
224
n
224
ALA
224
A
LYS
225
n
225
LYS
225
A
ALA
226
n
226
ALA
226
A
LYS
227
n
227
LYS
227
A
THR
228
n
228
THR
228
A
ASP
229
n
229
ASP
229
A
SER
230
n
230
SER
230
A
ASN
231
n
231
ASN
231
A
LYS
232
n
232
LYS
232
A
ASP
233
n
233
ASP
233
A
ASN
234
n
234
ASN
234
A
VAL
235
n
235
VAL
235
A
TYR
236
n
236
TYR
236
A
VAL
237
n
237
VAL
237
A
ASN
238
n
238
ASN
238
A
PHE
239
n
239
PHE
239
A
LEU
240
n
240
LEU
240
A
SER
241
n
241
SER
241
A
VAL
242
n
242
VAL
242
A
ALA
243
n
243
ALA
243
A
SER
244
n
244
SER
244
A
GLY
245
n
245
GLY
245
A
GLY
246
n
246
GLY
246
A
SER
247
n
247
SER
247
A
ALA
248
n
248
ALA
248
A
PHE
249
n
249
PHE
249
A
ASN
250
n
250
ASN
250
A
SER
251
n
251
SER
251
A
THR
252
n
252
THR
252
A
SER
253
n
253
SER
253
A
ASN
254
n
254
ASN
254
A
TYR
255
n
255
TYR
255
A
ALA
256
n
256
ALA
256
A
SER
257
n
257
SER
257
A
HIS
258
n
258
HIS
258
A
ILE
259
n
259
ILE
259
A
ASN
260
n
260
ASN
260
A
PRO
261
n
261
PRO
261
A
GLU
262
n
262
GLU
262
A
ILE
263
n
263
ILE
263
A
ALA
264
n
264
ALA
264
A
LYS
265
n
265
LYS
265
A
THR
266
n
266
THR
266
A
ILE
267
n
267
ILE
267
A
LYS
268
n
268
LYS
268
A
ALA
269
n
269
ALA
269
A
ASN
270
n
270
ASN
270
A
GLY
271
n
271
GLY
271
A
LYS
272
n
272
LYS
272
A
ALA
273
n
273
ALA
273
A
ARG
274
n
274
ARG
274
A
THR
275
n
275
THR
275
A
GLY
276
n
276
GLY
276
A
TRP
277
n
277
TRP
277
A
LEU
278
n
278
LEU
278
A
ILE
279
n
279
ILE
279
A
VAL
280
n
280
VAL
280
A
ASP
281
n
281
ASP
281
A
TYR
282
n
282
TYR
282
A
ALA
283
n
283
ALA
283
A
GLY
284
n
284
GLY
284
A
TYR
285
n
285
TYR
285
A
THR
286
n
286
THR
286
A
TRP
287
n
287
TRP
287
A
PRO
288
n
288
PRO
288
A
GLY
289
n
289
GLY
289
A
TYR
290
n
290
TYR
290
A
ASP
291
n
291
ASP
291
A
ASP
292
n
292
ASP
292
A
ILE
293
n
293
ILE
293
A
VAL
294
n
294
VAL
294
A
SER
295
n
295
SER
295
A
GLU
296
n
296
GLU
296
A
ILE
297
n
297
ILE
297
A
ILE
298
n
298
ILE
298
A
ASP
299
n
299
ASP
299
A
SER
300
n
300
SER
300
A
ASN
301
n
301
ASN
301
A
LYS
302
n
302
LYS
302
A
LEU
303
n
303
LEU
303
A
n
304
304
A
n
305
305
A
n
306
306
A
n
307
307
A
n
308
308
A
n
309
309
A
n
310
310
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
85
A
O
LEU
85
A
N
VAL
78
A
N
VAL
78
A
O
SER
77
A
O
SER
77
A
N
ARG
69
A
N
ARG
69
A
N
PHE
64
A
N
PHE
64
A
O
SER
111
A
O
SER
111
A
N
ILE
108
A
N
ILE
108
A
O
VAL
162
A
O
VAL
162
A
O
LEU
85
A
O
LEU
85
A
N
VAL
78
A
N
VAL
78
A
O
SER
77
A
O
SER
77
A
N
ARG
69
A
N
ARG
69
A
O
PHE
63
A
O
PHE
63
A
N
SER
29
A
N
SER
29
A
N
GLY
28
A
N
GLY
28
A
O
LEU
278
A
O
LEU
278
A
O
TRP
277
A
O
TRP
277
A
N
TYR
236
A
N
TYR
236
A
O
VAL
235
A
O
VAL
235
A
N
LYS
203
A
N
LYS
203
A
O
VAL
204
A
O
VAL
204
A
N
PHE
191
A
N
PHE
191
1
A
SER
1
A
SER
1
1
Y
1
A
GLU
304
A
GLU
304
1
Y
1
A
HIS
305
A
HIS
305
1
Y
1
A
HIS
306
A
HIS
306
1
Y
1
A
HIS
307
A
HIS
307
1
Y
1
A
HIS
308
A
HIS
308
1
Y
1
A
HIS
309
A
HIS
309
1
Y
1
A
HIS
310
A
HIS
310
1
Y
1
A
ASN
10
-143.45
41.44
1
A
TYR
134
-131.26
-63.29
1
A
ASN
142
72.52
-5.33
1
A
ALA
248
150.91
-178.09
1
A
ASN
250
-117.48
74.43
1
A
THR
252
-37.38
-38.40
-13.4092
0.0000
0.0000
11.2970
-0.0000
2.1122
0.2408
0.1872
0.1898
2.300
29.855
678
14219
13541
5.01
98.44
0.26
RANDOM
1
1.34
MOLECULAR REPLACEMENT
22.37
0.90
1.11
PDB ENTRY 3V18
ML
FLAT BULK SOLVENT MODEL
31.729
0.306
2.300
29.855
103
2520
12
0
2405
0.008
2488
1.086
3364
14.934
907
0.076
354
0.004
434
0.2919
0.2083
2.4775
147
2529
100.00
0.2801
0.2128
2.7267
138
2563
100.00
0.2949
0.2081
3.1209
150
2565
99.00
0.2669
0.1955
3.9306
107
2545
96.00
0.1870
0.1635
29.8574
136
2661
97.00
2.0
50
4F2T
274181
0
-3
0.063
1
12.3
98.9
2.00
2.03
997
1
12.3
97.8
data collection
HKL-2000
model building
PHENIX
(phaser)
refinement
PHENIX
(phenix.refine: 1.7.3_928)
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
(phaser)
Modulation of S.aureus Phosphatidylinositol-Specific Phospholipase C Membrane Binding.
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
SER
3
A
SER
3
HELX_P
A
LEU
15
A
LEU
15
5
1
13
A
HIS
20
A
HIS
20
HELX_P
A
ILE
24
A
ILE
24
5
2
5
A
ASP
31
A
ASP
31
HELX_P
A
LEU
37
A
LEU
37
5
3
7
A
ASP
39
A
ASP
39
HELX_P
A
LYS
47
A
LYS
47
1
4
9
A
ASP
52
A
ASP
52
HELX_P
A
SER
59
A
SER
59
1
5
8
A
LEU
89
A
LEU
89
HELX_P
A
TYR
103
A
TYR
103
1
6
15
A
THR
125
A
THR
125
HELX_P
A
TYR
134
A
TYR
134
1
7
10
A
ASN
137
A
ASN
137
HELX_P
A
GLN
141
A
GLN
141
5
8
5
A
THR
153
A
THR
153
HELX_P
A
LYS
158
A
LYS
158
1
9
6
A
TYR
211
A
TYR
211
HELX_P
A
THR
228
A
THR
228
1
10
18
A
SER
251
A
SER
251
HELX_P
A
ASN
270
A
ASN
270
1
11
20
A
ASP
292
A
ASP
292
HELX_P
A
SER
300
A
SER
300
1
12
9
LYASE
alpha beta barrel, phosphatidylinostol-specific phospholipase C, membrane interface, LYASE
PLC_STAAE
UNP
1
11
P45723
SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHH
GMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGK
IVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFL
SVASGGSAFNSTYNYASHINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNK
11
312
4F2T
1
302
P45723
A
1
1
302
1
TYR
engineered mutation
SER
253
4F2T
A
P45723
UNP
263
253
1
expression tag
LEU
303
4F2T
A
P45723
UNP
303
1
expression tag
GLU
304
4F2T
A
P45723
UNP
304
1
expression tag
HIS
305
4F2T
A
P45723
UNP
305
1
expression tag
HIS
306
4F2T
A
P45723
UNP
306
1
expression tag
HIS
307
4F2T
A
P45723
UNP
307
1
expression tag
HIS
308
4F2T
A
P45723
UNP
308
1
expression tag
HIS
309
4F2T
A
P45723
UNP
309
1
expression tag
HIS
310
4F2T
A
P45723
UNP
310
5
8
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
VAL
83
A
VAL
83
A
GLU
88
A
GLU
88
A
MET
75
A
MET
75
A
HIS
80
A
HIS
80
A
PHE
63
A
PHE
63
A
ALA
72
A
ALA
72
A
ILE
108
A
ILE
108
A
LYS
114
A
LYS
114
A
ILE
161
A
ILE
161
A
ARG
166
A
ARG
166
A
VAL
83
A
VAL
83
A
GLU
88
A
GLU
88
A
MET
75
A
MET
75
A
HIS
80
A
HIS
80
A
PHE
63
A
PHE
63
A
ALA
72
A
ALA
72
A
ILE
26
A
ILE
26
A
SER
29
A
SER
29
A
TRP
277
A
TRP
277
A
VAL
280
A
VAL
280
A
ASN
234
A
ASN
234
A
PHE
239
A
PHE
239
A
LEU
200
A
LEU
200
A
GLN
205
A
GLN
205
A
THR
190
A
THR
190
A
ILE
195
A
ILE
195
BINDING SITE FOR RESIDUE ACT A 401
A
ACT
401
Software
5
BINDING SITE FOR RESIDUE ACT A 402
A
ACT
402
Software
5
BINDING SITE FOR RESIDUE ACT A 403
A
ACT
403
Software
7
A
LYS
113
A
LYS
113
5
1_555
A
ARG
166
A
ARG
166
5
1_555
A
TRP
185
A
TRP
185
5
1_555
A
HOH
518
E
HOH
5
1_555
A
HOH
599
E
HOH
5
1_555
A
LEU
37
A
LEU
37
5
1_555
A
LYS
38
A
LYS
38
5
1_555
A
ASP
39
A
ASP
39
5
1_555
A
LYS
42
A
LYS
42
5
1_555
A
HIS
86
A
HIS
86
5
1_555
A
HIS
30
A
HIS
30
7
1_555
A
HIS
80
A
HIS
80
7
1_555
A
TYR
208
A
TYR
208
7
1_555
A
VAL
242
A
VAL
242
7
1_555
A
ALA
243
A
ALA
243
7
1_555
A
HOH
511
E
HOH
7
1_555
A
HOH
572
E
HOH
7
1_555
19
P 21 21 21