0.015229 0.008792 0.000000 0.000000 0.017585 0.000000 0.000000 0.000000 0.008245 0.00000 0.00000 0.00000 Chin, K.-H. Liao, Y.-T. Chou, S.-H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 65.665 65.665 121.290 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C20 H24 N10 O14 P2 690.411 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) c-di-GMP; Cyclic diguanosine monophosphate non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N P N 98 N O N 99 N O N 100 N O N 101 N C N 102 R C N 103 N O N 104 S C N 105 N O N 106 R C N 107 N O N 108 R C Y 109 N N Y 110 N C Y 111 N N Y 112 N C N 113 N C N 114 N O N 115 N N N 116 N C N 117 N N N 118 N N Y 119 N C N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 R C N 146 N C N 147 N O N 148 N C N 149 N S N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 N C N 163 N C N 164 N C N 165 N O N 166 N N N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N N N 179 S C N 180 N C N 181 N O N 182 N C N 183 N C N 184 N C N 185 N O N 186 N O N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 N C N 199 N C N 200 N O N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C Y 212 N C Y 213 N N Y 214 N C Y 215 N C Y 216 N N N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N O N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 S C N 236 N C N 237 N C N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N C N 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N C N 283 N N N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N C N 306 N S N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N C N 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 R C N 379 N O N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N N Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C N 429 N O N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N N N 443 S C N 444 N C N 445 N O N 446 N C N 447 N C N 448 N C N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing Y 84 N sing Y 85 N sing Y 86 N doub Y 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing Y 95 N doub N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing Y 110 N sing Y 111 N doub Y 112 N sing Y 113 N sing Y 114 N doub N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing Y 216 N sing Y 217 N doub Y 218 N doub N 219 N sing Y 220 N sing N 221 N sing Y 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing Y 324 N doub Y 325 N sing Y 326 N sing N 327 N sing Y 328 N doub N 329 N sing Y 330 N doub N 331 N sing Y 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing Y 393 N doub Y 394 N sing Y 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N sing Y 402 N doub N 403 N sing Y 404 N doub N 405 N sing Y 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing Y 421 N doub Y 422 N sing Y 423 N sing N 424 N sing Y 425 N doub N 426 N sing Y 427 N doub N 428 N sing Y 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N doub N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing US Acta Crystallogr.,Sect.D ABCRE6 1399-0047 68 1380 1392 10.1107/S0907444912030594 22993092 Structural polymorphism of c-di-GMP bound to an EAL domain and in complex with a type II PilZ-domain protein. 2012 10.2210/pdb4f3h/pdb pdb_00004f3h 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-04-15 ADSC QUANTUM 315 GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.00000 1.0 BL13B1 NSRRC 1.00000 SYNCHROTRON NSRRC BEAMLINE BL13B1 28074.807 Putative uncharacterized protein UNP residues 437-684 1 man polymer 690.411 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) 1 syn non-polymer 18.015 water 175 nat water FimXEAL no no SNAEEERIERWVEQLREALIGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLITEIDRWVVAR AIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLASVSAMGCKVG LEQFGSGLDSFQLLAHFQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGILTVAEFVADAQSMSSFFTAGVDYVQG DFVAPTGPLM SNAEEERIERWVEQLREALIGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLITEIDRWVVAR AIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLASVSAMGCKVG LEQFGSGLDSFQLLAHFQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGILTVAEFVADAQSMSSFFTAGVDYVQG DFVAPTGPLM A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample XCC2291 340 Xanthomonas campestris pv. campestris 562 Escherichia coli plasmid 8 2.69 54.25 VAPOR DIFFUSION, SITTING DROP 8.0 20% PEG 3350, 0.2M Sodium Formate (pH7.2), pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 citation citation_author struct_ref_seq_dif chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description Structure summary 1 0 2012-11-14 1 1 2019-12-25 1 2 2023-11-08 _citation.country _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_PubMed _citation.title _citation_author.name _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2012-05-09 REL REL C2E 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) HOH water 4F48 PDB ENTRY 4F48 PDB experimental model C2E 501 2 C2E C2E 501 A HOH 503 3 HOH HOH 601 A HOH 504 3 HOH HOH 602 A HOH 505 3 HOH HOH 603 A HOH 506 3 HOH HOH 604 A HOH 507 3 HOH HOH 605 A HOH 508 3 HOH HOH 606 A HOH 509 3 HOH HOH 607 A HOH 510 3 HOH HOH 608 A HOH 511 3 HOH HOH 609 A HOH 512 3 HOH HOH 610 A HOH 513 3 HOH HOH 611 A HOH 514 3 HOH HOH 612 A HOH 515 3 HOH HOH 613 A HOH 518 3 HOH HOH 614 A HOH 519 3 HOH HOH 615 A HOH 520 3 HOH HOH 616 A HOH 521 3 HOH HOH 617 A HOH 522 3 HOH HOH 618 A HOH 523 3 HOH HOH 619 A HOH 524 3 HOH HOH 620 A HOH 525 3 HOH HOH 621 A HOH 526 3 HOH HOH 622 A HOH 527 3 HOH HOH 623 A HOH 529 3 HOH HOH 624 A HOH 530 3 HOH HOH 625 A HOH 531 3 HOH HOH 626 A HOH 532 3 HOH HOH 627 A HOH 533 3 HOH HOH 628 A HOH 534 3 HOH HOH 629 A HOH 535 3 HOH HOH 630 A HOH 536 3 HOH HOH 631 A HOH 537 3 HOH HOH 632 A HOH 538 3 HOH HOH 633 A HOH 539 3 HOH HOH 634 A HOH 540 3 HOH HOH 635 A HOH 541 3 HOH HOH 636 A HOH 542 3 HOH HOH 637 A HOH 543 3 HOH HOH 638 A HOH 547 3 HOH HOH 639 A HOH 548 3 HOH HOH 640 A HOH 550 3 HOH HOH 641 A HOH 552 3 HOH HOH 642 A HOH 553 3 HOH HOH 643 A HOH 556 3 HOH HOH 644 A HOH 557 3 HOH HOH 645 A HOH 558 3 HOH HOH 646 A HOH 560 3 HOH HOH 647 A HOH 562 3 HOH HOH 648 A HOH 563 3 HOH HOH 649 A HOH 565 3 HOH HOH 650 A HOH 566 3 HOH HOH 651 A HOH 569 3 HOH HOH 652 A HOH 571 3 HOH HOH 653 A HOH 572 3 HOH HOH 654 A HOH 573 3 HOH HOH 655 A HOH 574 3 HOH HOH 656 A HOH 577 3 HOH HOH 657 A HOH 580 3 HOH HOH 658 A HOH 583 3 HOH HOH 659 A HOH 584 3 HOH HOH 660 A HOH 586 3 HOH HOH 661 A HOH 590 3 HOH HOH 662 A HOH 591 3 HOH HOH 663 A HOH 595 3 HOH HOH 664 A HOH 599 3 HOH HOH 665 A HOH 600 3 HOH HOH 666 A HOH 602 3 HOH HOH 667 A HOH 603 3 HOH HOH 668 A HOH 606 3 HOH HOH 669 A HOH 607 3 HOH HOH 670 A HOH 608 3 HOH HOH 671 A HOH 609 3 HOH HOH 672 A HOH 610 3 HOH HOH 673 A HOH 611 3 HOH HOH 674 A HOH 612 3 HOH HOH 675 A HOH 613 3 HOH HOH 676 A HOH 614 3 HOH HOH 677 A HOH 615 3 HOH HOH 678 A HOH 616 3 HOH HOH 679 A HOH 617 3 HOH HOH 680 A HOH 618 3 HOH HOH 681 A HOH 620 3 HOH HOH 682 A HOH 621 3 HOH HOH 683 A HOH 622 3 HOH HOH 684 A HOH 623 3 HOH HOH 685 A HOH 625 3 HOH HOH 686 A HOH 626 3 HOH HOH 687 A HOH 627 3 HOH HOH 688 A HOH 628 3 HOH HOH 689 A HOH 629 3 HOH HOH 690 A HOH 630 3 HOH HOH 691 A HOH 631 3 HOH HOH 692 A HOH 632 3 HOH HOH 693 A HOH 634 3 HOH HOH 694 A HOH 637 3 HOH HOH 695 A HOH 638 3 HOH HOH 696 A HOH 639 3 HOH HOH 697 A HOH 640 3 HOH HOH 698 A HOH 643 3 HOH HOH 699 A HOH 644 3 HOH HOH 700 A HOH 646 3 HOH HOH 701 A HOH 647 3 HOH HOH 702 A HOH 649 3 HOH HOH 703 A HOH 650 3 HOH HOH 704 A HOH 652 3 HOH HOH 705 A HOH 653 3 HOH HOH 706 A HOH 655 3 HOH HOH 707 A HOH 656 3 HOH HOH 708 A HOH 661 3 HOH HOH 709 A HOH 662 3 HOH HOH 710 A HOH 664 3 HOH HOH 711 A HOH 665 3 HOH HOH 712 A HOH 666 3 HOH HOH 713 A HOH 667 3 HOH HOH 714 A HOH 669 3 HOH HOH 715 A HOH 672 3 HOH HOH 716 A HOH 673 3 HOH HOH 717 A HOH 674 3 HOH HOH 718 A HOH 676 3 HOH HOH 719 A HOH 678 3 HOH HOH 720 A HOH 679 3 HOH HOH 721 A HOH 681 3 HOH HOH 722 A HOH 682 3 HOH HOH 723 A HOH 685 3 HOH HOH 724 A HOH 687 3 HOH HOH 725 A HOH 689 3 HOH HOH 726 A HOH 690 3 HOH HOH 727 A HOH 691 3 HOH HOH 728 A HOH 693 3 HOH HOH 729 A HOH 694 3 HOH HOH 730 A HOH 700 3 HOH HOH 731 A HOH 701 3 HOH HOH 732 A HOH 702 3 HOH HOH 733 A HOH 703 3 HOH HOH 734 A HOH 704 3 HOH HOH 735 A HOH 705 3 HOH HOH 736 A HOH 706 3 HOH HOH 737 A HOH 708 3 HOH HOH 738 A HOH 709 3 HOH HOH 739 A HOH 712 3 HOH HOH 740 A HOH 714 3 HOH HOH 741 A HOH 716 3 HOH HOH 742 A HOH 717 3 HOH HOH 743 A HOH 726 3 HOH HOH 744 A HOH 727 3 HOH HOH 745 A HOH 729 3 HOH HOH 746 A HOH 732 3 HOH HOH 747 A HOH 735 3 HOH HOH 748 A HOH 737 3 HOH HOH 749 A HOH 738 3 HOH HOH 750 A HOH 744 3 HOH HOH 751 A HOH 745 3 HOH HOH 752 A HOH 748 3 HOH HOH 753 A HOH 750 3 HOH HOH 754 A HOH 752 3 HOH HOH 755 A HOH 753 3 HOH HOH 756 A HOH 755 3 HOH HOH 757 A HOH 759 3 HOH HOH 758 A HOH 760 3 HOH HOH 759 A HOH 761 3 HOH HOH 760 A HOH 764 3 HOH HOH 761 A HOH 765 3 HOH HOH 762 A HOH 768 3 HOH HOH 763 A HOH 769 3 HOH HOH 764 A HOH 770 3 HOH HOH 765 A HOH 771 3 HOH HOH 766 A HOH 772 3 HOH HOH 767 A HOH 773 3 HOH HOH 768 A HOH 774 3 HOH HOH 769 A HOH 775 3 HOH HOH 770 A HOH 776 3 HOH HOH 771 A HOH 777 3 HOH HOH 772 A HOH 778 3 HOH HOH 773 A HOH 779 3 HOH HOH 774 A HOH 780 3 HOH HOH 775 A n 1 -2 A n 2 -1 A n 3 0 A GLU 1 n 4 GLU 1 A GLU 2 n 5 GLU 2 A GLU 3 n 6 GLU 3 A ARG 4 n 7 ARG 4 A ILE 5 n 8 ILE 5 A GLU 6 n 9 GLU 6 A ARG 7 n 10 ARG 7 A TRP 8 n 11 TRP 8 A VAL 9 n 12 VAL 9 A GLU 10 n 13 GLU 10 A GLN 11 n 14 GLN 11 A LEU 12 n 15 LEU 12 A ARG 13 n 16 ARG 13 A GLU 14 n 17 GLU 14 A ALA 15 n 18 ALA 15 A LEU 16 n 19 LEU 16 A ILE 17 n 20 ILE 17 A GLY 18 n 21 GLY 18 A ASP 19 n 22 ASP 19 A GLY 20 n 23 GLY 20 A PHE 21 n 24 PHE 21 A LEU 22 n 25 LEU 22 A LEU 23 n 26 LEU 23 A HIS 24 n 27 HIS 24 A TYR 25 n 28 TYR 25 A GLN 26 n 29 GLN 26 A PRO 27 n 30 PRO 27 A VAL 28 n 31 VAL 28 A LEU 29 n 32 LEU 29 A ASN 30 n 33 ASN 30 A LEU 31 n 34 LEU 31 A GLN 32 n 35 GLN 32 A GLY 33 n 36 GLY 33 A GLU 34 n 37 GLU 34 A PRO 35 n 38 PRO 35 A LEU 36 n 39 LEU 36 A GLU 37 n 40 GLU 37 A LEU 38 n 41 LEU 38 A TYR 39 n 42 TYR 39 A GLN 40 n 43 GLN 40 A ALA 41 n 44 ALA 41 A PHE 42 n 45 PHE 42 A LEU 43 n 46 LEU 43 A ARG 44 n 47 ARG 44 A LEU 45 n 48 LEU 45 A GLU 46 n 49 GLU 46 A ARG 47 n 50 ARG 47 A ASN 48 n 51 ASN 48 A GLY 49 n 52 GLY 49 A GLU 50 n 53 GLU 50 A MET 51 n 54 MET 51 A MET 52 n 55 MET 52 A SER 53 n 56 SER 53 A PRO 54 n 57 PRO 54 A ASN 55 n 58 ASN 55 A ALA 56 n 59 ALA 56 A PHE 57 n 60 PHE 57 A MET 58 n 61 MET 58 A ALA 59 n 62 ALA 59 A ILE 60 n 63 ILE 60 A ALA 61 n 64 ALA 61 A GLU 62 n 65 GLU 62 A GLU 63 n 66 GLU 63 A HIS 64 n 67 HIS 64 A ASP 65 n 68 ASP 65 A LEU 66 n 69 LEU 66 A ILE 67 n 70 ILE 67 A THR 68 n 71 THR 68 A GLU 69 n 72 GLU 69 A ILE 70 n 73 ILE 70 A ASP 71 n 74 ASP 71 A ARG 72 n 75 ARG 72 A TRP 73 n 76 TRP 73 A VAL 74 n 77 VAL 74 A VAL 75 n 78 VAL 75 A ALA 76 n 79 ALA 76 A ARG 77 n 80 ARG 77 A ALA 78 n 81 ALA 78 A ILE 79 n 82 ILE 79 A ARG 80 n 83 ARG 80 A GLN 81 n 84 GLN 81 A LEU 82 n 85 LEU 82 A GLY 83 n 86 GLY 83 A GLU 84 n 87 GLU 84 A ARG 85 n 88 ARG 85 A GLN 86 n 89 GLN 86 A ARG 87 n 90 ARG 87 A ALA 88 n 91 ALA 88 A GLY 89 n 92 GLY 89 A HIS 90 n 93 HIS 90 A LYS 91 n 94 LYS 91 A THR 92 n 95 THR 92 A HIS 93 n 96 HIS 93 A LEU 94 n 97 LEU 94 A LEU 95 n 98 LEU 95 A VAL 96 n 99 VAL 96 A ARG 97 n 100 ARG 97 A ILE 98 n 101 ILE 98 A GLY 99 n 102 GLY 99 A PRO 100 n 103 PRO 100 A ASN 101 n 104 ASN 101 A SER 102 n 105 SER 102 A PHE 103 n 106 PHE 103 A SER 104 n 107 SER 104 A ASP 105 n 108 ASP 105 A PRO 106 n 109 PRO 106 A GLN 107 n 110 GLN 107 A MET 108 n 111 MET 108 A ILE 109 n 112 ILE 109 A ASP 110 n 113 ASP 110 A THR 111 n 114 THR 111 A ILE 112 n 115 ILE 112 A ARG 113 n 116 ARG 113 A GLU 114 n 117 GLU 114 A GLN 115 n 118 GLN 115 A LEU 116 n 119 LEU 116 A ALA 117 n 120 ALA 117 A VAL 118 n 121 VAL 118 A TYR 119 n 122 TYR 119 A GLY 120 n 123 GLY 120 A VAL 121 n 124 VAL 121 A PRO 122 n 125 PRO 122 A GLY 123 n 126 GLY 123 A GLU 124 n 127 GLU 124 A ARG 125 n 128 ARG 125 A LEU 126 n 129 LEU 126 A TRP 127 n 130 TRP 127 A LEU 128 n 131 LEU 128 A GLN 129 n 132 GLN 129 A THR 130 n 133 THR 130 A PRO 131 n 134 PRO 131 A GLU 132 n 135 GLU 132 A SER 133 n 136 SER 133 A LYS 134 n 137 LYS 134 A VAL 135 n 138 VAL 135 A PHE 136 n 139 PHE 136 A THR 137 n 140 THR 137 A HIS 138 n 141 HIS 138 A LEU 139 n 142 LEU 139 A ARG 140 n 143 ARG 140 A ASN 141 n 144 ASN 141 A ALA 142 n 145 ALA 142 A GLN 143 n 146 GLN 143 A GLN 144 n 147 GLN 144 A PHE 145 n 148 PHE 145 A LEU 146 n 149 LEU 146 A ALA 147 n 150 ALA 147 A SER 148 n 151 SER 148 A VAL 149 n 152 VAL 149 A SER 150 n 153 SER 150 A ALA 151 n 154 ALA 151 A MET 152 n 155 MET 152 A GLY 153 n 156 GLY 153 A CYS 154 n 157 CYS 154 A LYS 155 n 158 LYS 155 A VAL 156 n 159 VAL 156 A GLY 157 n 160 GLY 157 A LEU 158 n 161 LEU 158 A GLU 159 n 162 GLU 159 A GLN 160 n 163 GLN 160 A PHE 161 n 164 PHE 161 A GLY 162 n 165 GLY 162 A SER 163 n 166 SER 163 A GLY 164 n 167 GLY 164 A LEU 165 n 168 LEU 165 A ASP 166 n 169 ASP 166 A SER 167 n 170 SER 167 A PHE 168 n 171 PHE 168 A GLN 169 n 172 GLN 169 A LEU 170 n 173 LEU 170 A LEU 171 n 174 LEU 171 A ALA 172 n 175 ALA 172 A HIS 173 n 176 HIS 173 A PHE 174 n 177 PHE 174 A GLN 175 n 178 GLN 175 A PRO 176 n 179 PRO 176 A ALA 177 n 180 ALA 177 A PHE 178 n 181 PHE 178 A LEU 179 n 182 LEU 179 A LYS 180 n 183 LYS 180 A LEU 181 n 184 LEU 181 A ASP 182 n 185 ASP 182 A ARG 183 n 186 ARG 183 A SER 184 n 187 SER 184 A ILE 185 n 188 ILE 185 A THR 186 n 189 THR 186 A GLY 187 n 190 GLY 187 A ASP 188 n 191 ASP 188 A ILE 189 n 192 ILE 189 A ALA 190 n 193 ALA 190 A SER 191 n 194 SER 191 A ALA 192 n 195 ALA 192 A ARG 193 n 196 ARG 193 A GLU 194 n 197 GLU 194 A SER 195 n 198 SER 195 A GLN 196 n 199 GLN 196 A GLU 197 n 200 GLU 197 A LYS 198 n 201 LYS 198 A ILE 199 n 202 ILE 199 A ARG 200 n 203 ARG 200 A GLU 201 n 204 GLU 201 A ILE 202 n 205 ILE 202 A THR 203 n 206 THR 203 A SER 204 n 207 SER 204 A ARG 205 n 208 ARG 205 A ALA 206 n 209 ALA 206 A GLN 207 n 210 GLN 207 A PRO 208 n 211 PRO 208 A THR 209 n 212 THR 209 A GLY 210 n 213 GLY 210 A ILE 211 n 214 ILE 211 A LEU 212 n 215 LEU 212 A THR 213 n 216 THR 213 A VAL 214 n 217 VAL 214 A ALA 215 n 218 ALA 215 A GLU 216 n 219 GLU 216 A PHE 217 n 220 PHE 217 A VAL 218 n 221 VAL 218 A ALA 219 n 222 ALA 219 A ASP 220 n 223 ASP 220 A ALA 221 n 224 ALA 221 A GLN 222 n 225 GLN 222 A SER 223 n 226 SER 223 A MET 224 n 227 MET 224 A SER 225 n 228 SER 225 A SER 226 n 229 SER 226 A PHE 227 n 230 PHE 227 A PHE 228 n 231 PHE 228 A THR 229 n 232 THR 229 A ALA 230 n 233 ALA 230 A GLY 231 n 234 GLY 231 A VAL 232 n 235 VAL 232 A ASP 233 n 236 ASP 233 A TYR 234 n 237 TYR 234 A VAL 235 n 238 VAL 235 A GLN 236 n 239 GLN 236 A GLY 237 n 240 GLY 237 A ASP 238 n 241 ASP 238 A PHE 239 n 242 PHE 239 A VAL 240 n 243 VAL 240 A ALA 241 n 244 ALA 241 A PRO 242 n 245 PRO 242 A THR 243 n 246 THR 243 A GLY 244 n 247 GLY 244 A PRO 245 n 248 PRO 245 A LEU 246 n 249 LEU 246 A MET 247 n 250 MET 247 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 22 A N LEU 25 A O ARG 44 A O ARG 47 A N ALA 41 A N ALA 44 A O LEU 95 A O LEU 98 A N VAL 96 A N VAL 99 A O TRP 127 A O TRP 130 A N LEU 128 A N LEU 131 A O LYS 155 A O LYS 158 A N LEU 158 A N LEU 161 A O LYS 180 A O LYS 183 A N LEU 179 A N LEU 182 A O VAL 214 A O VAL 217 A N THR 213 A N THR 216 A O TYR 234 A O TYR 237 A O VAL 235 A O VAL 238 A N LEU 29 A N LEU 32 A N LEU 22 A N LEU 25 A O ARG 44 A O ARG 47 A N LEU 45 A N LEU 48 A O MET 52 A O MET 55 1 A HOH 613 C HOH 1 A HOH 621 C HOH 1 A SER -2 A SER 1 1 Y 1 A ASN -1 A ASN 2 1 Y 1 A ALA 0 A ALA 3 1 Y 1 A A NH1 O21 ARG C2E 97 501 1.78 1 A A NH2 OE1 ARG GLU 97 159 2.17 1 A ARG 44 0.325 SIDE CHAIN 1 A ARG 97 0.153 SIDE CHAIN 1 15.99 1.70 113.60 129.59 A A A CA CB CG HIS HIS HIS 24 24 24 N 1 -15.50 2.20 120.60 105.10 A A A C N CD GLU PRO PRO 34 35 35 Y 1 17.04 2.20 113.40 130.44 A A A CA CB CG ASN ASN ASN 55 55 55 N 1 8.93 0.90 118.30 127.23 A A A CB CG OD1 ASP ASP ASP 71 71 71 N 1 -8.71 0.90 118.30 109.59 A A A CB CG OD2 ASP ASP ASP 71 71 71 N 1 16.15 2.20 113.40 129.55 A A A CA CB CG ARG ARG ARG 72 72 72 N 1 18.04 2.20 113.40 131.44 A A A CA CB CG ARG ARG ARG 97 97 97 N 1 -7.52 0.50 120.30 112.78 A A A NE CZ NH1 ARG ARG ARG 97 97 97 N 1 7.66 0.50 120.30 127.96 A A A NE CZ NH2 ARG ARG ARG 97 97 97 N 1 -13.44 2.00 110.40 96.96 A A A CB CA C GLN GLN GLN 236 236 236 N 1 A A CB CG ARG ARG 97 97 -0.167 0.027 1.521 1.354 N 1 A A NE CZ ARG ARG 97 97 0.152 0.013 1.326 1.478 N 1 A A O O HOH HOH 604 604 1.90 1_555 6_554 1 A GLU 3 -98.01 -60.51 1 A ILE 17 -100.15 -118.88 1 A ASP 19 26.59 -177.75 1 A ASN 48 44.37 -150.44 1 A PRO 54 -46.88 -3.40 1 A PHE 57 -150.36 -10.83 1 A ALA 61 -46.36 -17.41 1 A ASN 101 -68.50 7.52 1 A THR 137 -109.14 -73.18 1 A LEU 139 -66.37 -72.07 1 A SER 163 -61.15 -83.69 1 A LEU 165 -28.35 -72.14 1 A ASP 166 -41.40 -13.66 1 A ALA 172 -69.57 3.58 1 A PHE 174 -100.47 -86.36 1 A GLN 175 105.46 67.70 1 A ASP 188 165.19 -8.04 1 A ILE 199 -68.98 16.39 1 A LEU 212 -57.48 172.94 1 A ALA 241 -178.34 125.96 protein_rep.param protein.top water_rep.param water.top C2E_param C2E_top 72.9 -12.46 0.00 0.00 -12.46 0.00 24.92 BULK SOLVENT MODEL USED 0.259 0.017 0.234 0.26 0.234 2.50 23.26 523 10674 4.9 97.4 RANDOM 563472.94 0.000000 1 RESTRAINED THROUGHOUT 2.0 MOLECULAR REPLACEMENT PDB ENTRY 4F48 FLAT MODEL 91.6371 0.4 0.70 0.56 5.00 0.96 0.73 2.50 23.26 175 2178 46 0 1957 0.076 5.5 22.7 2.89 1.30 1.50 2.28 2.00 1.50 2.00 2.41 2.50 0.069 2.66 71 1619 6 4.2 94.3 48.0 2.5 30 4F3H 10851 2.0 2.0 1 98.7 2.5 1 98.4 data collection HKL-2000 refinement CNS data reduction HKL-2000 data scaling HKL-2000 phasing CNS The structural of FimXEAL-c-di-GMP from Xanthomonas campestris 1 N N 2 N N 3 N N A GLU 3 A GLU 6 HELX_P A LEU 16 A LEU 19 1 1 14 A PHE 57 A PHE 60 HELX_P A HIS 64 A HIS 67 1 2 8 A LEU 66 A LEU 69 HELX_P A ALA 88 A ALA 91 1 3 23 A GLY 99 A GLY 102 HELX_P A PHE 103 A PHE 106 5 4 5 A ASP 105 A ASP 108 HELX_P A TYR 119 A TYR 122 1 5 15 A PRO 122 A PRO 125 HELX_P A GLU 124 A GLU 127 5 6 3 A GLU 132 A GLU 135 HELX_P A HIS 138 A HIS 141 1 7 7 A HIS 138 A HIS 141 HELX_P A ALA 151 A ALA 154 1 8 14 A LEU 165 A LEU 168 HELX_P A ALA 172 A ALA 175 1 9 8 A ASP 182 A ASP 185 HELX_P A GLY 187 A GLY 190 1 10 6 A ARG 193 A ARG 196 HELX_P A ILE 202 A ILE 205 1 11 10 A ILE 202 A ILE 205 HELX_P A GLY 210 A GLY 213 1 12 9 A ASP 220 A ASP 223 HELX_P A GLY 231 A GLY 234 1 13 12 SIGNALING PROTEIN FimXEAL-c-di-GMP, type IV pilus, SIGNALING PROTEIN A GLU 34 A GLU 37 1 A PRO 35 A PRO 38 -0.73 Q8P8F1_XANCP UNP 1 437 Q8P8F1 AEEERIERWVEQLREALIGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLITEIDRWVVARAI RQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLASVSAMGCKVGLE QFGSGLDSFQLLAHFQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGILTVAEFVADAQSMSSFFTAGVDYVQGDF VAPTGPLM 437 684 4F3H 0 247 Q8P8F1 A 1 3 250 1 expression tag SER -2 4F3H A Q8P8F1 UNP 1 1 expression tag ASN -1 4F3H A Q8P8F1 UNP 2 9 3 anti-parallel parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel A PHE 21 A PHE 24 A PRO 27 A PRO 30 A LEU 38 A LEU 41 A ARG 47 A ARG 50 A HIS 93 A HIS 96 A ARG 97 A ARG 100 A LEU 126 A LEU 129 A PRO 131 A PRO 134 A LYS 155 A LYS 158 A PHE 161 A PHE 164 A PHE 178 A PHE 181 A LEU 181 A LEU 184 A LEU 212 A LEU 215 A ALA 215 A ALA 218 A TYR 234 A TYR 237 A VAL 235 A VAL 238 A LEU 29 A LEU 32 A ASN 30 A ASN 33 A PHE 21 A PHE 24 A PRO 27 A PRO 30 A LEU 38 A LEU 41 A ARG 47 A ARG 50 A GLU 50 A GLU 53 A MET 52 A MET 55 BINDING SITE FOR RESIDUE C2E A 501 A C2E 501 Software 21 A GLN 26 A GLN 29 21 1_555 A GLN 40 A GLN 43 21 1_555 A PHE 42 A PHE 45 21 1_555 A LEU 43 A LEU 46 21 1_555 A ARG 44 A ARG 47 21 1_555 A SER 53 A SER 56 21 1_555 A PRO 54 A PRO 57 21 1_555 A ASN 55 A ASN 58 21 1_555 A ASP 71 A ASP 74 21 1_555 A VAL 74 A VAL 77 21 1_555 A ARG 97 A ARG 100 21 1_555 A ARG 113 A ARG 116 21 5_444 A ALA 117 A ALA 120 21 5_444 A GLU 216 A GLU 219 21 1_555 A PHE 217 A PHE 220 21 1_555 A GLN 236 A GLN 239 21 1_555 A GLY 237 A GLY 240 21 1_555 A ASP 238 A ASP 241 21 1_555 A HOH 717 C HOH 21 1_555 A HOH 773 C HOH 21 1_555 A HOH 774 C HOH 21 1_555 154 P 32 2 1