0.015229
0.008792
0.000000
0.000000
0.017585
0.000000
0.000000
0.000000
0.008245
0.00000
0.00000
0.00000
Chin, K.-H.
Liao, Y.-T.
Chou, S.-H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
65.665
65.665
121.290
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C20 H24 N10 O14 P2
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
c-di-GMP; Cyclic diguanosine monophosphate
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
P
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
C
N
102
R
C
N
103
N
O
N
104
S
C
N
105
N
O
N
106
R
C
N
107
N
O
N
108
R
C
Y
109
N
N
Y
110
N
C
Y
111
N
N
Y
112
N
C
N
113
N
C
N
114
N
O
N
115
N
N
N
116
N
C
N
117
N
N
N
118
N
N
Y
119
N
C
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
S
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
N
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
O
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
Y
212
N
C
Y
213
N
N
Y
214
N
C
Y
215
N
C
Y
216
N
N
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
S
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
N
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
C
N
306
N
S
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
R
C
N
379
N
O
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
N
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
N
429
N
O
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
N
N
443
S
C
N
444
N
C
N
445
N
O
N
446
N
C
N
447
N
C
N
448
N
C
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
sing
Y
85
N
sing
Y
86
N
doub
Y
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
Y
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
sing
Y
111
N
doub
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
sing
Y
217
N
doub
Y
218
N
doub
N
219
N
sing
Y
220
N
sing
N
221
N
sing
Y
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
US
Acta Crystallogr.,Sect.D
ABCRE6
1399-0047
68
1380
1392
10.1107/S0907444912030594
22993092
Structural polymorphism of c-di-GMP bound to an EAL domain and in complex with a type II PilZ-domain protein.
2012
10.2210/pdb4f3h/pdb
pdb_00004f3h
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-04-15
ADSC QUANTUM 315
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
BL13B1
NSRRC
1.00000
SYNCHROTRON
NSRRC BEAMLINE BL13B1
28074.807
Putative uncharacterized protein
UNP residues 437-684
1
man
polymer
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
1
syn
non-polymer
18.015
water
175
nat
water
FimXEAL
no
no
SNAEEERIERWVEQLREALIGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLITEIDRWVVAR
AIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLASVSAMGCKVG
LEQFGSGLDSFQLLAHFQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGILTVAEFVADAQSMSSFFTAGVDYVQG
DFVAPTGPLM
SNAEEERIERWVEQLREALIGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLITEIDRWVVAR
AIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLASVSAMGCKVG
LEQFGSGLDSFQLLAHFQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGILTVAEFVADAQSMSSFFTAGVDYVQG
DFVAPTGPLM
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
XCC2291
340
Xanthomonas campestris pv. campestris
562
Escherichia coli
plasmid
8
2.69
54.25
VAPOR DIFFUSION, SITTING DROP
8.0
20% PEG 3350, 0.2M Sodium Formate (pH7.2), pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
citation
citation_author
struct_ref_seq_dif
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2012-11-14
1
1
2019-12-25
1
2
2023-11-08
_citation.country
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2012-05-09
REL
REL
C2E
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
HOH
water
4F48
PDB ENTRY 4F48
PDB
experimental model
C2E
501
2
C2E
C2E
501
A
HOH
503
3
HOH
HOH
601
A
HOH
504
3
HOH
HOH
602
A
HOH
505
3
HOH
HOH
603
A
HOH
506
3
HOH
HOH
604
A
HOH
507
3
HOH
HOH
605
A
HOH
508
3
HOH
HOH
606
A
HOH
509
3
HOH
HOH
607
A
HOH
510
3
HOH
HOH
608
A
HOH
511
3
HOH
HOH
609
A
HOH
512
3
HOH
HOH
610
A
HOH
513
3
HOH
HOH
611
A
HOH
514
3
HOH
HOH
612
A
HOH
515
3
HOH
HOH
613
A
HOH
518
3
HOH
HOH
614
A
HOH
519
3
HOH
HOH
615
A
HOH
520
3
HOH
HOH
616
A
HOH
521
3
HOH
HOH
617
A
HOH
522
3
HOH
HOH
618
A
HOH
523
3
HOH
HOH
619
A
HOH
524
3
HOH
HOH
620
A
HOH
525
3
HOH
HOH
621
A
HOH
526
3
HOH
HOH
622
A
HOH
527
3
HOH
HOH
623
A
HOH
529
3
HOH
HOH
624
A
HOH
530
3
HOH
HOH
625
A
HOH
531
3
HOH
HOH
626
A
HOH
532
3
HOH
HOH
627
A
HOH
533
3
HOH
HOH
628
A
HOH
534
3
HOH
HOH
629
A
HOH
535
3
HOH
HOH
630
A
HOH
536
3
HOH
HOH
631
A
HOH
537
3
HOH
HOH
632
A
HOH
538
3
HOH
HOH
633
A
HOH
539
3
HOH
HOH
634
A
HOH
540
3
HOH
HOH
635
A
HOH
541
3
HOH
HOH
636
A
HOH
542
3
HOH
HOH
637
A
HOH
543
3
HOH
HOH
638
A
HOH
547
3
HOH
HOH
639
A
HOH
548
3
HOH
HOH
640
A
HOH
550
3
HOH
HOH
641
A
HOH
552
3
HOH
HOH
642
A
HOH
553
3
HOH
HOH
643
A
HOH
556
3
HOH
HOH
644
A
HOH
557
3
HOH
HOH
645
A
HOH
558
3
HOH
HOH
646
A
HOH
560
3
HOH
HOH
647
A
HOH
562
3
HOH
HOH
648
A
HOH
563
3
HOH
HOH
649
A
HOH
565
3
HOH
HOH
650
A
HOH
566
3
HOH
HOH
651
A
HOH
569
3
HOH
HOH
652
A
HOH
571
3
HOH
HOH
653
A
HOH
572
3
HOH
HOH
654
A
HOH
573
3
HOH
HOH
655
A
HOH
574
3
HOH
HOH
656
A
HOH
577
3
HOH
HOH
657
A
HOH
580
3
HOH
HOH
658
A
HOH
583
3
HOH
HOH
659
A
HOH
584
3
HOH
HOH
660
A
HOH
586
3
HOH
HOH
661
A
HOH
590
3
HOH
HOH
662
A
HOH
591
3
HOH
HOH
663
A
HOH
595
3
HOH
HOH
664
A
HOH
599
3
HOH
HOH
665
A
HOH
600
3
HOH
HOH
666
A
HOH
602
3
HOH
HOH
667
A
HOH
603
3
HOH
HOH
668
A
HOH
606
3
HOH
HOH
669
A
HOH
607
3
HOH
HOH
670
A
HOH
608
3
HOH
HOH
671
A
HOH
609
3
HOH
HOH
672
A
HOH
610
3
HOH
HOH
673
A
HOH
611
3
HOH
HOH
674
A
HOH
612
3
HOH
HOH
675
A
HOH
613
3
HOH
HOH
676
A
HOH
614
3
HOH
HOH
677
A
HOH
615
3
HOH
HOH
678
A
HOH
616
3
HOH
HOH
679
A
HOH
617
3
HOH
HOH
680
A
HOH
618
3
HOH
HOH
681
A
HOH
620
3
HOH
HOH
682
A
HOH
621
3
HOH
HOH
683
A
HOH
622
3
HOH
HOH
684
A
HOH
623
3
HOH
HOH
685
A
HOH
625
3
HOH
HOH
686
A
HOH
626
3
HOH
HOH
687
A
HOH
627
3
HOH
HOH
688
A
HOH
628
3
HOH
HOH
689
A
HOH
629
3
HOH
HOH
690
A
HOH
630
3
HOH
HOH
691
A
HOH
631
3
HOH
HOH
692
A
HOH
632
3
HOH
HOH
693
A
HOH
634
3
HOH
HOH
694
A
HOH
637
3
HOH
HOH
695
A
HOH
638
3
HOH
HOH
696
A
HOH
639
3
HOH
HOH
697
A
HOH
640
3
HOH
HOH
698
A
HOH
643
3
HOH
HOH
699
A
HOH
644
3
HOH
HOH
700
A
HOH
646
3
HOH
HOH
701
A
HOH
647
3
HOH
HOH
702
A
HOH
649
3
HOH
HOH
703
A
HOH
650
3
HOH
HOH
704
A
HOH
652
3
HOH
HOH
705
A
HOH
653
3
HOH
HOH
706
A
HOH
655
3
HOH
HOH
707
A
HOH
656
3
HOH
HOH
708
A
HOH
661
3
HOH
HOH
709
A
HOH
662
3
HOH
HOH
710
A
HOH
664
3
HOH
HOH
711
A
HOH
665
3
HOH
HOH
712
A
HOH
666
3
HOH
HOH
713
A
HOH
667
3
HOH
HOH
714
A
HOH
669
3
HOH
HOH
715
A
HOH
672
3
HOH
HOH
716
A
HOH
673
3
HOH
HOH
717
A
HOH
674
3
HOH
HOH
718
A
HOH
676
3
HOH
HOH
719
A
HOH
678
3
HOH
HOH
720
A
HOH
679
3
HOH
HOH
721
A
HOH
681
3
HOH
HOH
722
A
HOH
682
3
HOH
HOH
723
A
HOH
685
3
HOH
HOH
724
A
HOH
687
3
HOH
HOH
725
A
HOH
689
3
HOH
HOH
726
A
HOH
690
3
HOH
HOH
727
A
HOH
691
3
HOH
HOH
728
A
HOH
693
3
HOH
HOH
729
A
HOH
694
3
HOH
HOH
730
A
HOH
700
3
HOH
HOH
731
A
HOH
701
3
HOH
HOH
732
A
HOH
702
3
HOH
HOH
733
A
HOH
703
3
HOH
HOH
734
A
HOH
704
3
HOH
HOH
735
A
HOH
705
3
HOH
HOH
736
A
HOH
706
3
HOH
HOH
737
A
HOH
708
3
HOH
HOH
738
A
HOH
709
3
HOH
HOH
739
A
HOH
712
3
HOH
HOH
740
A
HOH
714
3
HOH
HOH
741
A
HOH
716
3
HOH
HOH
742
A
HOH
717
3
HOH
HOH
743
A
HOH
726
3
HOH
HOH
744
A
HOH
727
3
HOH
HOH
745
A
HOH
729
3
HOH
HOH
746
A
HOH
732
3
HOH
HOH
747
A
HOH
735
3
HOH
HOH
748
A
HOH
737
3
HOH
HOH
749
A
HOH
738
3
HOH
HOH
750
A
HOH
744
3
HOH
HOH
751
A
HOH
745
3
HOH
HOH
752
A
HOH
748
3
HOH
HOH
753
A
HOH
750
3
HOH
HOH
754
A
HOH
752
3
HOH
HOH
755
A
HOH
753
3
HOH
HOH
756
A
HOH
755
3
HOH
HOH
757
A
HOH
759
3
HOH
HOH
758
A
HOH
760
3
HOH
HOH
759
A
HOH
761
3
HOH
HOH
760
A
HOH
764
3
HOH
HOH
761
A
HOH
765
3
HOH
HOH
762
A
HOH
768
3
HOH
HOH
763
A
HOH
769
3
HOH
HOH
764
A
HOH
770
3
HOH
HOH
765
A
HOH
771
3
HOH
HOH
766
A
HOH
772
3
HOH
HOH
767
A
HOH
773
3
HOH
HOH
768
A
HOH
774
3
HOH
HOH
769
A
HOH
775
3
HOH
HOH
770
A
HOH
776
3
HOH
HOH
771
A
HOH
777
3
HOH
HOH
772
A
HOH
778
3
HOH
HOH
773
A
HOH
779
3
HOH
HOH
774
A
HOH
780
3
HOH
HOH
775
A
n
1
-2
A
n
2
-1
A
n
3
0
A
GLU
1
n
4
GLU
1
A
GLU
2
n
5
GLU
2
A
GLU
3
n
6
GLU
3
A
ARG
4
n
7
ARG
4
A
ILE
5
n
8
ILE
5
A
GLU
6
n
9
GLU
6
A
ARG
7
n
10
ARG
7
A
TRP
8
n
11
TRP
8
A
VAL
9
n
12
VAL
9
A
GLU
10
n
13
GLU
10
A
GLN
11
n
14
GLN
11
A
LEU
12
n
15
LEU
12
A
ARG
13
n
16
ARG
13
A
GLU
14
n
17
GLU
14
A
ALA
15
n
18
ALA
15
A
LEU
16
n
19
LEU
16
A
ILE
17
n
20
ILE
17
A
GLY
18
n
21
GLY
18
A
ASP
19
n
22
ASP
19
A
GLY
20
n
23
GLY
20
A
PHE
21
n
24
PHE
21
A
LEU
22
n
25
LEU
22
A
LEU
23
n
26
LEU
23
A
HIS
24
n
27
HIS
24
A
TYR
25
n
28
TYR
25
A
GLN
26
n
29
GLN
26
A
PRO
27
n
30
PRO
27
A
VAL
28
n
31
VAL
28
A
LEU
29
n
32
LEU
29
A
ASN
30
n
33
ASN
30
A
LEU
31
n
34
LEU
31
A
GLN
32
n
35
GLN
32
A
GLY
33
n
36
GLY
33
A
GLU
34
n
37
GLU
34
A
PRO
35
n
38
PRO
35
A
LEU
36
n
39
LEU
36
A
GLU
37
n
40
GLU
37
A
LEU
38
n
41
LEU
38
A
TYR
39
n
42
TYR
39
A
GLN
40
n
43
GLN
40
A
ALA
41
n
44
ALA
41
A
PHE
42
n
45
PHE
42
A
LEU
43
n
46
LEU
43
A
ARG
44
n
47
ARG
44
A
LEU
45
n
48
LEU
45
A
GLU
46
n
49
GLU
46
A
ARG
47
n
50
ARG
47
A
ASN
48
n
51
ASN
48
A
GLY
49
n
52
GLY
49
A
GLU
50
n
53
GLU
50
A
MET
51
n
54
MET
51
A
MET
52
n
55
MET
52
A
SER
53
n
56
SER
53
A
PRO
54
n
57
PRO
54
A
ASN
55
n
58
ASN
55
A
ALA
56
n
59
ALA
56
A
PHE
57
n
60
PHE
57
A
MET
58
n
61
MET
58
A
ALA
59
n
62
ALA
59
A
ILE
60
n
63
ILE
60
A
ALA
61
n
64
ALA
61
A
GLU
62
n
65
GLU
62
A
GLU
63
n
66
GLU
63
A
HIS
64
n
67
HIS
64
A
ASP
65
n
68
ASP
65
A
LEU
66
n
69
LEU
66
A
ILE
67
n
70
ILE
67
A
THR
68
n
71
THR
68
A
GLU
69
n
72
GLU
69
A
ILE
70
n
73
ILE
70
A
ASP
71
n
74
ASP
71
A
ARG
72
n
75
ARG
72
A
TRP
73
n
76
TRP
73
A
VAL
74
n
77
VAL
74
A
VAL
75
n
78
VAL
75
A
ALA
76
n
79
ALA
76
A
ARG
77
n
80
ARG
77
A
ALA
78
n
81
ALA
78
A
ILE
79
n
82
ILE
79
A
ARG
80
n
83
ARG
80
A
GLN
81
n
84
GLN
81
A
LEU
82
n
85
LEU
82
A
GLY
83
n
86
GLY
83
A
GLU
84
n
87
GLU
84
A
ARG
85
n
88
ARG
85
A
GLN
86
n
89
GLN
86
A
ARG
87
n
90
ARG
87
A
ALA
88
n
91
ALA
88
A
GLY
89
n
92
GLY
89
A
HIS
90
n
93
HIS
90
A
LYS
91
n
94
LYS
91
A
THR
92
n
95
THR
92
A
HIS
93
n
96
HIS
93
A
LEU
94
n
97
LEU
94
A
LEU
95
n
98
LEU
95
A
VAL
96
n
99
VAL
96
A
ARG
97
n
100
ARG
97
A
ILE
98
n
101
ILE
98
A
GLY
99
n
102
GLY
99
A
PRO
100
n
103
PRO
100
A
ASN
101
n
104
ASN
101
A
SER
102
n
105
SER
102
A
PHE
103
n
106
PHE
103
A
SER
104
n
107
SER
104
A
ASP
105
n
108
ASP
105
A
PRO
106
n
109
PRO
106
A
GLN
107
n
110
GLN
107
A
MET
108
n
111
MET
108
A
ILE
109
n
112
ILE
109
A
ASP
110
n
113
ASP
110
A
THR
111
n
114
THR
111
A
ILE
112
n
115
ILE
112
A
ARG
113
n
116
ARG
113
A
GLU
114
n
117
GLU
114
A
GLN
115
n
118
GLN
115
A
LEU
116
n
119
LEU
116
A
ALA
117
n
120
ALA
117
A
VAL
118
n
121
VAL
118
A
TYR
119
n
122
TYR
119
A
GLY
120
n
123
GLY
120
A
VAL
121
n
124
VAL
121
A
PRO
122
n
125
PRO
122
A
GLY
123
n
126
GLY
123
A
GLU
124
n
127
GLU
124
A
ARG
125
n
128
ARG
125
A
LEU
126
n
129
LEU
126
A
TRP
127
n
130
TRP
127
A
LEU
128
n
131
LEU
128
A
GLN
129
n
132
GLN
129
A
THR
130
n
133
THR
130
A
PRO
131
n
134
PRO
131
A
GLU
132
n
135
GLU
132
A
SER
133
n
136
SER
133
A
LYS
134
n
137
LYS
134
A
VAL
135
n
138
VAL
135
A
PHE
136
n
139
PHE
136
A
THR
137
n
140
THR
137
A
HIS
138
n
141
HIS
138
A
LEU
139
n
142
LEU
139
A
ARG
140
n
143
ARG
140
A
ASN
141
n
144
ASN
141
A
ALA
142
n
145
ALA
142
A
GLN
143
n
146
GLN
143
A
GLN
144
n
147
GLN
144
A
PHE
145
n
148
PHE
145
A
LEU
146
n
149
LEU
146
A
ALA
147
n
150
ALA
147
A
SER
148
n
151
SER
148
A
VAL
149
n
152
VAL
149
A
SER
150
n
153
SER
150
A
ALA
151
n
154
ALA
151
A
MET
152
n
155
MET
152
A
GLY
153
n
156
GLY
153
A
CYS
154
n
157
CYS
154
A
LYS
155
n
158
LYS
155
A
VAL
156
n
159
VAL
156
A
GLY
157
n
160
GLY
157
A
LEU
158
n
161
LEU
158
A
GLU
159
n
162
GLU
159
A
GLN
160
n
163
GLN
160
A
PHE
161
n
164
PHE
161
A
GLY
162
n
165
GLY
162
A
SER
163
n
166
SER
163
A
GLY
164
n
167
GLY
164
A
LEU
165
n
168
LEU
165
A
ASP
166
n
169
ASP
166
A
SER
167
n
170
SER
167
A
PHE
168
n
171
PHE
168
A
GLN
169
n
172
GLN
169
A
LEU
170
n
173
LEU
170
A
LEU
171
n
174
LEU
171
A
ALA
172
n
175
ALA
172
A
HIS
173
n
176
HIS
173
A
PHE
174
n
177
PHE
174
A
GLN
175
n
178
GLN
175
A
PRO
176
n
179
PRO
176
A
ALA
177
n
180
ALA
177
A
PHE
178
n
181
PHE
178
A
LEU
179
n
182
LEU
179
A
LYS
180
n
183
LYS
180
A
LEU
181
n
184
LEU
181
A
ASP
182
n
185
ASP
182
A
ARG
183
n
186
ARG
183
A
SER
184
n
187
SER
184
A
ILE
185
n
188
ILE
185
A
THR
186
n
189
THR
186
A
GLY
187
n
190
GLY
187
A
ASP
188
n
191
ASP
188
A
ILE
189
n
192
ILE
189
A
ALA
190
n
193
ALA
190
A
SER
191
n
194
SER
191
A
ALA
192
n
195
ALA
192
A
ARG
193
n
196
ARG
193
A
GLU
194
n
197
GLU
194
A
SER
195
n
198
SER
195
A
GLN
196
n
199
GLN
196
A
GLU
197
n
200
GLU
197
A
LYS
198
n
201
LYS
198
A
ILE
199
n
202
ILE
199
A
ARG
200
n
203
ARG
200
A
GLU
201
n
204
GLU
201
A
ILE
202
n
205
ILE
202
A
THR
203
n
206
THR
203
A
SER
204
n
207
SER
204
A
ARG
205
n
208
ARG
205
A
ALA
206
n
209
ALA
206
A
GLN
207
n
210
GLN
207
A
PRO
208
n
211
PRO
208
A
THR
209
n
212
THR
209
A
GLY
210
n
213
GLY
210
A
ILE
211
n
214
ILE
211
A
LEU
212
n
215
LEU
212
A
THR
213
n
216
THR
213
A
VAL
214
n
217
VAL
214
A
ALA
215
n
218
ALA
215
A
GLU
216
n
219
GLU
216
A
PHE
217
n
220
PHE
217
A
VAL
218
n
221
VAL
218
A
ALA
219
n
222
ALA
219
A
ASP
220
n
223
ASP
220
A
ALA
221
n
224
ALA
221
A
GLN
222
n
225
GLN
222
A
SER
223
n
226
SER
223
A
MET
224
n
227
MET
224
A
SER
225
n
228
SER
225
A
SER
226
n
229
SER
226
A
PHE
227
n
230
PHE
227
A
PHE
228
n
231
PHE
228
A
THR
229
n
232
THR
229
A
ALA
230
n
233
ALA
230
A
GLY
231
n
234
GLY
231
A
VAL
232
n
235
VAL
232
A
ASP
233
n
236
ASP
233
A
TYR
234
n
237
TYR
234
A
VAL
235
n
238
VAL
235
A
GLN
236
n
239
GLN
236
A
GLY
237
n
240
GLY
237
A
ASP
238
n
241
ASP
238
A
PHE
239
n
242
PHE
239
A
VAL
240
n
243
VAL
240
A
ALA
241
n
244
ALA
241
A
PRO
242
n
245
PRO
242
A
THR
243
n
246
THR
243
A
GLY
244
n
247
GLY
244
A
PRO
245
n
248
PRO
245
A
LEU
246
n
249
LEU
246
A
MET
247
n
250
MET
247
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
22
A
N
LEU
25
A
O
ARG
44
A
O
ARG
47
A
N
ALA
41
A
N
ALA
44
A
O
LEU
95
A
O
LEU
98
A
N
VAL
96
A
N
VAL
99
A
O
TRP
127
A
O
TRP
130
A
N
LEU
128
A
N
LEU
131
A
O
LYS
155
A
O
LYS
158
A
N
LEU
158
A
N
LEU
161
A
O
LYS
180
A
O
LYS
183
A
N
LEU
179
A
N
LEU
182
A
O
VAL
214
A
O
VAL
217
A
N
THR
213
A
N
THR
216
A
O
TYR
234
A
O
TYR
237
A
O
VAL
235
A
O
VAL
238
A
N
LEU
29
A
N
LEU
32
A
N
LEU
22
A
N
LEU
25
A
O
ARG
44
A
O
ARG
47
A
N
LEU
45
A
N
LEU
48
A
O
MET
52
A
O
MET
55
1
A
HOH
613
C
HOH
1
A
HOH
621
C
HOH
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
A
NH1
O21
ARG
C2E
97
501
1.78
1
A
A
NH2
OE1
ARG
GLU
97
159
2.17
1
A
ARG
44
0.325
SIDE CHAIN
1
A
ARG
97
0.153
SIDE CHAIN
1
15.99
1.70
113.60
129.59
A
A
A
CA
CB
CG
HIS
HIS
HIS
24
24
24
N
1
-15.50
2.20
120.60
105.10
A
A
A
C
N
CD
GLU
PRO
PRO
34
35
35
Y
1
17.04
2.20
113.40
130.44
A
A
A
CA
CB
CG
ASN
ASN
ASN
55
55
55
N
1
8.93
0.90
118.30
127.23
A
A
A
CB
CG
OD1
ASP
ASP
ASP
71
71
71
N
1
-8.71
0.90
118.30
109.59
A
A
A
CB
CG
OD2
ASP
ASP
ASP
71
71
71
N
1
16.15
2.20
113.40
129.55
A
A
A
CA
CB
CG
ARG
ARG
ARG
72
72
72
N
1
18.04
2.20
113.40
131.44
A
A
A
CA
CB
CG
ARG
ARG
ARG
97
97
97
N
1
-7.52
0.50
120.30
112.78
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
97
97
97
N
1
7.66
0.50
120.30
127.96
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
97
97
97
N
1
-13.44
2.00
110.40
96.96
A
A
A
CB
CA
C
GLN
GLN
GLN
236
236
236
N
1
A
A
CB
CG
ARG
ARG
97
97
-0.167
0.027
1.521
1.354
N
1
A
A
NE
CZ
ARG
ARG
97
97
0.152
0.013
1.326
1.478
N
1
A
A
O
O
HOH
HOH
604
604
1.90
1_555
6_554
1
A
GLU
3
-98.01
-60.51
1
A
ILE
17
-100.15
-118.88
1
A
ASP
19
26.59
-177.75
1
A
ASN
48
44.37
-150.44
1
A
PRO
54
-46.88
-3.40
1
A
PHE
57
-150.36
-10.83
1
A
ALA
61
-46.36
-17.41
1
A
ASN
101
-68.50
7.52
1
A
THR
137
-109.14
-73.18
1
A
LEU
139
-66.37
-72.07
1
A
SER
163
-61.15
-83.69
1
A
LEU
165
-28.35
-72.14
1
A
ASP
166
-41.40
-13.66
1
A
ALA
172
-69.57
3.58
1
A
PHE
174
-100.47
-86.36
1
A
GLN
175
105.46
67.70
1
A
ASP
188
165.19
-8.04
1
A
ILE
199
-68.98
16.39
1
A
LEU
212
-57.48
172.94
1
A
ALA
241
-178.34
125.96
protein_rep.param
protein.top
water_rep.param
water.top
C2E_param
C2E_top
72.9
-12.46
0.00
0.00
-12.46
0.00
24.92
BULK SOLVENT MODEL USED
0.259
0.017
0.234
0.26
0.234
2.50
23.26
523
10674
4.9
97.4
RANDOM
563472.94
0.000000
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 4F48
FLAT MODEL
91.6371
0.4
0.70
0.56
5.00
0.96
0.73
2.50
23.26
175
2178
46
0
1957
0.076
5.5
22.7
2.89
1.30
1.50
2.28
2.00
1.50
2.00
2.41
2.50
0.069
2.66
71
1619
6
4.2
94.3
48.0
2.5
30
4F3H
10851
2.0
2.0
1
98.7
2.5
1
98.4
data collection
HKL-2000
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
The structural of FimXEAL-c-di-GMP from Xanthomonas campestris
1
N
N
2
N
N
3
N
N
A
GLU
3
A
GLU
6
HELX_P
A
LEU
16
A
LEU
19
1
1
14
A
PHE
57
A
PHE
60
HELX_P
A
HIS
64
A
HIS
67
1
2
8
A
LEU
66
A
LEU
69
HELX_P
A
ALA
88
A
ALA
91
1
3
23
A
GLY
99
A
GLY
102
HELX_P
A
PHE
103
A
PHE
106
5
4
5
A
ASP
105
A
ASP
108
HELX_P
A
TYR
119
A
TYR
122
1
5
15
A
PRO
122
A
PRO
125
HELX_P
A
GLU
124
A
GLU
127
5
6
3
A
GLU
132
A
GLU
135
HELX_P
A
HIS
138
A
HIS
141
1
7
7
A
HIS
138
A
HIS
141
HELX_P
A
ALA
151
A
ALA
154
1
8
14
A
LEU
165
A
LEU
168
HELX_P
A
ALA
172
A
ALA
175
1
9
8
A
ASP
182
A
ASP
185
HELX_P
A
GLY
187
A
GLY
190
1
10
6
A
ARG
193
A
ARG
196
HELX_P
A
ILE
202
A
ILE
205
1
11
10
A
ILE
202
A
ILE
205
HELX_P
A
GLY
210
A
GLY
213
1
12
9
A
ASP
220
A
ASP
223
HELX_P
A
GLY
231
A
GLY
234
1
13
12
SIGNALING PROTEIN
FimXEAL-c-di-GMP, type IV pilus, SIGNALING PROTEIN
A
GLU
34
A
GLU
37
1
A
PRO
35
A
PRO
38
-0.73
Q8P8F1_XANCP
UNP
1
437
Q8P8F1
AEEERIERWVEQLREALIGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLITEIDRWVVARAI
RQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLASVSAMGCKVGLE
QFGSGLDSFQLLAHFQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGILTVAEFVADAQSMSSFFTAGVDYVQGDF
VAPTGPLM
437
684
4F3H
0
247
Q8P8F1
A
1
3
250
1
expression tag
SER
-2
4F3H
A
Q8P8F1
UNP
1
1
expression tag
ASN
-1
4F3H
A
Q8P8F1
UNP
2
9
3
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
21
A
PHE
24
A
PRO
27
A
PRO
30
A
LEU
38
A
LEU
41
A
ARG
47
A
ARG
50
A
HIS
93
A
HIS
96
A
ARG
97
A
ARG
100
A
LEU
126
A
LEU
129
A
PRO
131
A
PRO
134
A
LYS
155
A
LYS
158
A
PHE
161
A
PHE
164
A
PHE
178
A
PHE
181
A
LEU
181
A
LEU
184
A
LEU
212
A
LEU
215
A
ALA
215
A
ALA
218
A
TYR
234
A
TYR
237
A
VAL
235
A
VAL
238
A
LEU
29
A
LEU
32
A
ASN
30
A
ASN
33
A
PHE
21
A
PHE
24
A
PRO
27
A
PRO
30
A
LEU
38
A
LEU
41
A
ARG
47
A
ARG
50
A
GLU
50
A
GLU
53
A
MET
52
A
MET
55
BINDING SITE FOR RESIDUE C2E A 501
A
C2E
501
Software
21
A
GLN
26
A
GLN
29
21
1_555
A
GLN
40
A
GLN
43
21
1_555
A
PHE
42
A
PHE
45
21
1_555
A
LEU
43
A
LEU
46
21
1_555
A
ARG
44
A
ARG
47
21
1_555
A
SER
53
A
SER
56
21
1_555
A
PRO
54
A
PRO
57
21
1_555
A
ASN
55
A
ASN
58
21
1_555
A
ASP
71
A
ASP
74
21
1_555
A
VAL
74
A
VAL
77
21
1_555
A
ARG
97
A
ARG
100
21
1_555
A
ARG
113
A
ARG
116
21
5_444
A
ALA
117
A
ALA
120
21
5_444
A
GLU
216
A
GLU
219
21
1_555
A
PHE
217
A
PHE
220
21
1_555
A
GLN
236
A
GLN
239
21
1_555
A
GLY
237
A
GLY
240
21
1_555
A
ASP
238
A
ASP
241
21
1_555
A
HOH
717
C
HOH
21
1_555
A
HOH
773
C
HOH
21
1_555
A
HOH
774
C
HOH
21
1_555
154
P 32 2 1