0.039546 0.000000 0.000000 0.000000 0.024865 0.000000 0.000000 0.000000 0.015274 0.00000 0.00000 0.00000 Szulik, M.W. Nocek, B. Joachimiak, A. Stone, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.287 40.217 65.471 C9 H14 N3 O8 P 323.197 2'-deoxy-5-hydroxycytidine 5'-(dihydrogen phosphate) DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N P N 2 N N N 3 N C N 4 N O N 5 N N N 6 N C N 7 N N N 8 N C N 9 N O N 10 N C N 11 R C N 12 N C N 13 S C N 14 N O N 15 R C N 16 N O N 17 N C N 18 N O N 19 N O N 20 N O N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N O N 34 N H N 35 N H N 36 N O N 37 N P N 38 N O N 39 N O N 40 N O N 41 N C N 42 R C N 43 N O N 44 S C N 45 N O N 46 N C N 47 R C Y 48 N N Y 49 N C Y 50 N N Y 51 N C Y 52 N C N 53 N N Y 54 N N Y 55 N C Y 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C N 84 N N N 85 N C N 86 N O N 87 N N N 88 N C N 89 N N N 90 N C N 91 N C N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N O N 107 N P N 108 N O N 109 N O N 110 N O N 111 N C N 112 R C N 113 N O N 114 S C N 115 N O N 116 N C N 117 R C Y 118 N N Y 119 N C Y 120 N N Y 121 N C N 122 N C N 123 N O N 124 N N N 125 N C N 126 N N N 127 N N Y 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N O N 144 N P N 145 N O N 146 N O N 147 N O N 148 N C N 149 R C N 150 N O N 151 S C N 152 N O N 153 N C N 154 R C N 155 N N N 156 N C N 157 N O N 158 N N N 159 N C N 160 N O N 161 N C N 162 N C N 163 N C N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N O N 180 N H N 181 N H N 182 N MG N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N doub N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing Y 60 N sing Y 61 N sing Y 62 N doub N 63 N sing Y 64 N sing Y 65 N sing Y 66 N doub N 67 N sing Y 68 N doub N 69 N sing N 70 N sing Y 71 N sing Y 72 N doub N 73 N sing Y 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing Y 133 N sing Y 134 N sing Y 135 N doub N 136 N sing Y 137 N sing N 138 N sing Y 139 N doub N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing TO BE PUBLISHED 0353 Crystal structure of 5-hydroxy-2'-deoxycytidine base paired with 2'-deoxyguanosine in Dickerson Drew Dodecamer 10.2210/pdb4f3u/pdb pdb_00004f3u 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2012-02-05 ADSC QUANTUM 315r double crystal SINGLE WAVELENGTH M x-ray 1 0.9794 1.0 19-ID APS 0.9794 SYNCHROTRON APS BEAMLINE 19-ID 3679.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5OC)P*GP*CP*G)-3') 2 syn polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 94 nat water no yes (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(5OC)(DG)(DC)(DG) CGCGAATTXGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 1 2.26 45.62 VAPOR DIFFUSION, HANGING DROP 7.0 10% MPD, 40mM sodium cacodylate, 12 mM spermine-tetra-HCl, 80mM sodium chloride, 20mM magnesium chloride., pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 5.508 1 19 A 1 B 24 0.176 A_DC1:DG24_B 1 -15.184 0.190 0.133 -0.121 7.215 1 19 A 2 B 23 -1.769 A_DG2:DC23_B 2 -11.875 -0.234 0.399 -0.197 -0.562 1 19 A 3 B 22 -1.193 A_DC3:DG22_B 3 -5.860 0.124 0.097 -0.164 5.862 1 20 A 5 B 20 3.888 A_DA5:DT20_B 4 -16.356 -0.020 -0.071 -0.084 2.175 1 20 A 6 B 19 4.404 A_DA6:DT19_B 5 -15.357 0.051 0.142 -0.103 -1.242 1 20 A 7 B 18 3.716 A_DT7:DA18_B 6 -16.394 -0.046 0.094 -0.141 -0.613 1 20 A 8 B 17 3.819 A_DT8:DA17_B 7 -13.579 -0.073 -0.112 -0.154 4.802 1 19 A 10 B 15 2.717 A_DG10:DC15_B 8 -9.236 -0.113 0.254 -0.088 3.262 1 19 A 11 B 14 -3.576 A_DC11:DG14_B 9 -16.058 0.112 0.173 -0.180 6.240 1 19 A 12 B 13 -1.687 A_DG12:DC13_B 10 -6.562 -0.182 0.207 -0.095 3.181 34.969 A A 1 2 10.186 B B 24 23 3.222 6.088 -0.063 0.042 AA_DC1DG2:DC23DG24_BB 1 -2.175 3.638 34.384 -0.837 -0.220 3.441 42.132 A A 2 3 -8.495 B B 23 22 3.521 -6.084 0.540 0.509 AA_DG2DC3:DG22DC23_BB 2 2.349 -3.280 41.646 1.380 -0.492 6.471 65.062 A A 3 5 10.282 B B 22 20 6.488 11.012 0.014 0.423 AA_DC3DA5:DT20DG22_BB 3 3.423 -3.196 64.142 -0.524 0.272 3.251 36.767 A A 5 6 0.413 B B 20 19 3.260 0.260 0.014 -0.292 AA_DA5DA6:DT19DT20_BB 4 -2.393 3.796 36.691 -0.498 -0.347 3.275 32.350 A A 6 7 -2.020 B B 19 18 3.257 -1.125 0.015 -0.579 AA_DA6DT7:DA18DT19_BB 5 0.709 -1.273 32.324 -0.841 0.098 3.189 34.326 A A 7 8 -2.361 B B 18 17 3.185 -1.392 -0.078 -0.358 AA_DT7DT8:DA17DA18_BB 6 1.787 -3.030 34.253 -0.394 0.406 6.480 69.095 A A 8 10 1.376 B B 17 15 6.476 1.560 -0.058 0.675 AA_DT8DG10:DC15DA17_BB 7 -4.700 4.146 68.939 0.482 -0.290 3.256 43.019 A A 10 11 -12.171 B B 15 14 3.348 -8.861 -1.308 0.514 AA_DG10DC11:DG14DC15_BB 8 -2.790 3.831 42.050 1.596 1.502 3.237 34.010 A A 11 12 9.673 B B 14 13 3.225 5.633 -0.032 0.338 AA_DC11DG12:DC13DG14_BB 9 -0.294 0.505 33.553 -0.317 0.009 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle pdbx_validate_polymer_linkage struct_conn struct_site repository Initial release Refinement description Advisory Data collection Database references Derived calculations Refinement description 1 0 2013-06-05 1 1 2017-11-15 1 2 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-05-09 REL REL MG MAGNESIUM ION HOH water 32630 synthetic sample 436D PDB ENTRY 436D PDB experimental model MG 45 2 MG MG 101 A HOH 1 3 HOH HOH 201 A HOH 3 3 HOH HOH 202 A HOH 4 3 HOH HOH 203 A HOH 6 3 HOH HOH 204 A HOH 7 3 HOH HOH 205 A HOH 11 3 HOH HOH 206 A HOH 12 3 HOH HOH 207 A HOH 14 3 HOH HOH 208 A HOH 15 3 HOH HOH 209 A HOH 20 3 HOH HOH 210 A HOH 23 3 HOH HOH 211 A HOH 24 3 HOH HOH 212 A HOH 26 3 HOH HOH 213 A HOH 27 3 HOH HOH 214 A HOH 29 3 HOH HOH 215 A HOH 30 3 HOH HOH 216 A HOH 33 3 HOH HOH 217 A HOH 35 3 HOH HOH 218 A HOH 36 3 HOH HOH 219 A HOH 40 3 HOH HOH 220 A HOH 42 3 HOH HOH 221 A HOH 43 3 HOH HOH 222 A HOH 44 3 HOH HOH 223 A HOH 45 3 HOH HOH 224 A HOH 47 3 HOH HOH 225 A HOH 50 3 HOH HOH 226 A HOH 51 3 HOH HOH 227 A HOH 54 3 HOH HOH 228 A HOH 57 3 HOH HOH 229 A HOH 58 3 HOH HOH 230 A HOH 59 3 HOH HOH 231 A HOH 61 3 HOH HOH 232 A HOH 63 3 HOH HOH 233 A HOH 64 3 HOH HOH 234 A HOH 68 3 HOH HOH 235 A HOH 69 3 HOH HOH 236 A HOH 70 3 HOH HOH 237 A HOH 71 3 HOH HOH 238 A HOH 72 3 HOH HOH 239 A HOH 73 3 HOH HOH 240 A HOH 74 3 HOH HOH 241 A HOH 83 3 HOH HOH 242 A HOH 90 3 HOH HOH 243 A HOH 92 3 HOH HOH 244 A HOH 93 3 HOH HOH 245 A HOH 97 3 HOH HOH 246 A HOH 2 3 HOH HOH 101 B HOH 5 3 HOH HOH 102 B HOH 9 3 HOH HOH 103 B HOH 10 3 HOH HOH 104 B HOH 13 3 HOH HOH 105 B HOH 16 3 HOH HOH 106 B HOH 17 3 HOH HOH 107 B HOH 18 3 HOH HOH 108 B HOH 19 3 HOH HOH 109 B HOH 21 3 HOH HOH 110 B HOH 22 3 HOH HOH 111 B HOH 25 3 HOH HOH 112 B HOH 28 3 HOH HOH 113 B HOH 31 3 HOH HOH 114 B HOH 32 3 HOH HOH 115 B HOH 34 3 HOH HOH 116 B HOH 37 3 HOH HOH 117 B HOH 38 3 HOH HOH 118 B HOH 39 3 HOH HOH 119 B HOH 41 3 HOH HOH 120 B HOH 46 3 HOH HOH 121 B HOH 48 3 HOH HOH 122 B HOH 49 3 HOH HOH 123 B HOH 52 3 HOH HOH 124 B HOH 53 3 HOH HOH 125 B HOH 55 3 HOH HOH 126 B HOH 56 3 HOH HOH 127 B HOH 60 3 HOH HOH 128 B HOH 65 3 HOH HOH 129 B HOH 66 3 HOH HOH 130 B HOH 67 3 HOH HOH 131 B HOH 77 3 HOH HOH 132 B HOH 78 3 HOH HOH 133 B HOH 79 3 HOH HOH 134 B HOH 80 3 HOH HOH 135 B HOH 81 3 HOH HOH 136 B HOH 82 3 HOH HOH 137 B HOH 84 3 HOH HOH 138 B HOH 85 3 HOH HOH 139 B HOH 86 3 HOH HOH 140 B HOH 87 3 HOH HOH 141 B HOH 88 3 HOH HOH 142 B HOH 89 3 HOH HOH 143 B HOH 91 3 HOH HOH 144 B HOH 94 3 HOH HOH 145 B HOH 95 3 HOH HOH 146 B HOH 96 3 HOH HOH 147 B HOH 98 3 HOH HOH 148 B DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DC 3 n 3 DC 3 A DG 4 n 4 DG 4 A DA 5 n 5 DA 5 A DA 6 n 6 DA 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A 5OC 9 n 9 5OC 9 A DG 10 n 10 DG 10 A DC 11 n 11 DC 11 A DG 12 n 12 DG 12 A DC 13 n 1 DC 13 B DG 14 n 2 DG 14 B DC 15 n 3 DC 15 B DG 16 n 4 DG 16 B DA 17 n 5 DA 17 B DA 18 n 6 DA 18 B DT 19 n 7 DT 19 B DT 20 n 8 DT 20 B 5OC 21 n 9 5OC 21 B DG 22 n 10 DG 22 B DC 23 n 11 DC 23 B DG 24 n 12 DG 24 B author_and_software_defined_assembly PISA 2 dimeric 1190 -7 4570 A HOH 233 D O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 234 D O HOH 1_555 89.4 A HOH 233 D O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 101 E O HOH 1_555 94.2 A HOH 234 D O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 101 E O HOH 1_555 83.0 A HOH 233 D O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 129 E O HOH 1_555 92.7 A HOH 234 D O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 129 E O HOH 1_555 169.8 B HOH 101 E O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 129 E O HOH 1_555 87.0 A HOH 233 D O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 130 E O HOH 1_555 90.0 A HOH 234 D O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 130 E O HOH 1_555 92.2 B HOH 101 E O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 130 E O HOH 1_555 173.5 B HOH 129 E O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 130 E O HOH 1_555 97.7 A HOH 233 D O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 131 E O HOH 1_555 175.4 A HOH 234 D O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 131 E O HOH 1_555 86.0 B HOH 101 E O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 131 E O HOH 1_555 86.0 B HOH 129 E O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 131 E O HOH 1_555 91.9 B HOH 130 E O HOH 1_555 A MG 101 C MG MG 1_555 B HOH 131 E O HOH 1_555 89.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A OP2 P 5OC DG 9 10 7.31 1 B B OP2 P 5OC DG 21 22 7.03 1 -5.79 0.90 105.70 99.91 A A A O5' P OP2 DC DC DC 3 3 3 N 1 -8.18 0.90 105.70 97.52 A A A O5' P OP2 DA DA DA 6 6 6 N 1 -4.83 0.80 102.40 97.57 A A A C3' C2' C1' DG DG DG 10 10 10 N 1 -5.50 0.90 105.70 100.20 A A A O5' P OP2 DG DG DG 12 12 12 N 1 8.19 1.20 119.70 127.89 B B B C3' O3' P DT DT 5OC 20 20 21 Y 1 -12.07 1.90 104.00 91.93 B B B O3' P O5' DT 5OC 5OC 20 21 21 Y 27.000 3.09 0.00 0.00 -2.47 0.00 -0.62 0.970 0.956 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23170 0.17234 0.18 0.17555 1.401 25.00 658 13382 12724 4.9 97.71 3.612 0.060 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.069 0.071 0.80 0.80 1.20 PDB ENTRY 436D MAXIMUM LIKELIHOOD MASK 1.401 25.00 94 583 1 488 0 0.019 0.011 546 0.003 0.020 256 2.400 1.479 840 6.219 3.000 610 0.327 0.200 74 0.036 0.020 290 0.027 0.020 122 7.478 3.000 802 35.672 5.000 20 19.925 5.000 819 0.273 0.233 1.438 58 778 20 93.83 1.40 25.0 4F3U 13718 13485 2.0 0.051 1 35.1 6.7 98.3 1.40 1.42 1 95.4 data collection SBC-Collect Collect phasing MOLREP refinement REFMAC 5.6.0117 data reduction HKL-3000 data scaling HKL-3000 Crystal structure of 5-hydroxy-2'-deoxycytidine base paired with 2'-deoxyguanosine in Dickerson Drew Dodecamer 1 N N 1 N N 2 N N 3 N N 3 N N covale 1.616 both A DT 8 A O3' DT 8 1_555 A 5OC 9 A P 5OC 9 1_555 covale 1.629 both B DT 20 B O3' DT 8 1_555 B 5OC 21 B P 5OC 9 1_555 metalc 2.103 A MG 101 C MG MG 1_555 A HOH 233 D O HOH 1_555 metalc 2.047 A MG 101 C MG MG 1_555 A HOH 234 D O HOH 1_555 metalc 2.101 A MG 101 C MG MG 1_555 B HOH 101 E O HOH 1_555 metalc 2.025 A MG 101 C MG MG 1_555 B HOH 129 E O HOH 1_555 metalc 2.019 A MG 101 C MG MG 1_555 B HOH 130 E O HOH 1_555 metalc 2.084 A MG 101 C MG MG 1_555 B HOH 131 E O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA 5-hydroxy-dC, modified Dickerson, 5-hydroxy-2'-deoxycytidine, DNA 4F3U PDB 1 4F3U 1 12 4F3U 1 12 4F3U A 1 1 12 13 24 4F3U 13 24 4F3U B 1 1 12 BINDING SITE FOR RESIDUE MG A 101 A MG 101 Software 6 A HOH 233 D HOH 6 1_555 A HOH 234 D HOH 6 1_555 B HOH 101 E HOH 6 1_555 B HOH 129 E HOH 6 1_555 B HOH 130 E HOH 6 1_555 B HOH 131 E HOH 6 1_555 19 P 21 21 21