0.025316
0.000000
0.000000
0.000000
0.011873
0.000000
0.000000
0.000000
0.011134
0.000000
0.000000
0.000000
Lopez, M.
Segarra, V.
Vidal, B.
Wenzkowski, C.
Jestel, A.
Krapp, S.
Blaesse, M.
Nagel, S.
Schreiner, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
39.501
84.227
89.819
C21 H20 F3 N5
399.412
N-{6-[3-(piperazin-1-yl)phenyl]pyridin-2-yl}-4-(trifluoromethyl)pyridin-2-amine
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
N
10
N
N
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
N
15
N
C
N
16
N
F
N
17
N
C
N
18
N
F
N
19
N
F
Y
20
N
N
Y
21
N
C
Y
22
N
C
Y
23
N
N
Y
24
N
C
N
25
N
N
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
N
N
71
N
C
N
72
N
N
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
R
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
S
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
S
N
354
N
O
N
355
N
O
N
356
N
O
N
357
N
O
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
R
C
N
363
N
O
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
N
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
N
413
N
O
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
N
4
N
sing
N
5
N
sing
Y
6
N
doub
N
7
N
sing
N
8
N
sing
Y
9
N
doub
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
Y
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
Y
19
N
doub
Y
20
N
sing
Y
21
N
doub
Y
22
N
sing
Y
23
N
sing
Y
24
N
sing
Y
25
N
doub
Y
26
N
doub
Y
27
N
doub
Y
28
N
sing
N
29
N
sing
N
30
N
sing
Y
31
N
doub
Y
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
Y
192
N
sing
Y
193
N
doub
Y
194
N
doub
N
195
N
sing
Y
196
N
sing
N
197
N
sing
Y
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
22
5419
5423
10.1016/j.bmcl.2012.07.045
22877633
Highly potent aminopyridines as Syk kinase inhibitors.
2012
10.2210/pdb4f4p/pdb
pdb_00004f4p
100.0
1
CCD
2008-07-25
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
X06DA
SLS
1.000
SYNCHROTRON
SLS BEAMLINE X06DA
31593.416
Tyrosine-protein kinase SYK
2.7.10.2
1
man
polymer
399.412
N-{6-[3-(piperazin-1-yl)phenyl]pyridin-2-yl}-4-(trifluoromethyl)pyridin-2-amine
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
21
nat
water
Spleen tyrosine kinase, p72-Syk
no
no
LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESW
MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN
YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDL
MNLCWTYDVENRPGFAAVELRLRNYYYDVVNEG
LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESW
MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN
YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDL
MNLCWTYDVENRPGFAAVELRLRNYYYDVVNEG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SYK
9606
Homo sapiens
562
Escherichia coli
1
2.430
49.470
audit_author
pdbx_unobs_or_zero_occ_atoms
chem_comp_atom
chem_comp_bond
database_2
pdbx_unobs_or_zero_occ_atoms
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Structure summary
Advisory
Data collection
Database references
Derived calculations
1
0
2012-12-12
1
1
2018-01-24
1
2
2024-02-28
_audit_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-05-11
REL
REL
0SB
N-{6-[3-(piperazin-1-yl)phenyl]pyridin-2-yl}-4-(trifluoromethyl)pyridin-2-amine
SO4
SULFATE ION
HOH
water
INX
1
2
0SB
0SB
701
A
SO4
1
3
SO4
SO4
702
A
HOH
1
4
HOH
HOH
801
A
HOH
2
4
HOH
HOH
802
A
HOH
3
4
HOH
HOH
803
A
HOH
4
4
HOH
HOH
804
A
HOH
5
4
HOH
HOH
805
A
HOH
6
4
HOH
HOH
806
A
HOH
7
4
HOH
HOH
807
A
HOH
8
4
HOH
HOH
808
A
HOH
9
4
HOH
HOH
809
A
HOH
10
4
HOH
HOH
810
A
HOH
11
4
HOH
HOH
811
A
HOH
12
4
HOH
HOH
812
A
HOH
13
4
HOH
HOH
813
A
HOH
14
4
HOH
HOH
814
A
HOH
15
4
HOH
HOH
815
A
HOH
16
4
HOH
HOH
816
A
HOH
17
4
HOH
HOH
817
A
HOH
18
4
HOH
HOH
818
A
HOH
19
4
HOH
HOH
819
A
HOH
20
4
HOH
HOH
820
A
HOH
21
4
HOH
HOH
821
A
LEU
365
n
1
LEU
365
A
ASP
366
n
2
ASP
366
A
ARG
367
n
3
ARG
367
A
LYS
368
n
4
LYS
368
A
LEU
369
n
5
LEU
369
A
LEU
370
n
6
LEU
370
A
THR
371
n
7
THR
371
A
LEU
372
n
8
LEU
372
A
GLU
373
n
9
GLU
373
A
ASP
374
n
10
ASP
374
A
LYS
375
n
11
LYS
375
A
GLU
376
n
12
GLU
376
A
LEU
377
n
13
LEU
377
A
GLY
378
n
14
GLY
378
A
SER
379
n
15
SER
379
A
GLY
380
n
16
GLY
380
A
ASN
381
n
17
ASN
381
A
PHE
382
n
18
PHE
382
A
GLY
383
n
19
GLY
383
A
THR
384
n
20
THR
384
A
VAL
385
n
21
VAL
385
A
LYS
386
n
22
LYS
386
A
LYS
387
n
23
LYS
387
A
GLY
388
n
24
GLY
388
A
TYR
389
n
25
TYR
389
A
n
26
390
A
n
27
391
A
n
28
392
A
n
29
393
A
n
30
394
A
n
31
395
A
VAL
396
n
32
VAL
396
A
LYS
397
n
33
LYS
397
A
THR
398
n
34
THR
398
A
VAL
399
n
35
VAL
399
A
ALA
400
n
36
ALA
400
A
VAL
401
n
37
VAL
401
A
LYS
402
n
38
LYS
402
A
ILE
403
n
39
ILE
403
A
LEU
404
n
40
LEU
404
A
LYS
405
n
41
LYS
405
A
n
42
406
A
n
43
407
A
n
44
408
A
n
45
409
A
n
46
410
A
PRO
411
n
47
PRO
411
A
ALA
412
n
48
ALA
412
A
LEU
413
n
49
LEU
413
A
LYS
414
n
50
LYS
414
A
ASP
415
n
51
ASP
415
A
GLU
416
n
52
GLU
416
A
LEU
417
n
53
LEU
417
A
LEU
418
n
54
LEU
418
A
ALA
419
n
55
ALA
419
A
GLU
420
n
56
GLU
420
A
ALA
421
n
57
ALA
421
A
ASN
422
n
58
ASN
422
A
VAL
423
n
59
VAL
423
A
MET
424
n
60
MET
424
A
GLN
425
n
61
GLN
425
A
GLN
426
n
62
GLN
426
A
LEU
427
n
63
LEU
427
A
ASP
428
n
64
ASP
428
A
ASN
429
n
65
ASN
429
A
PRO
430
n
66
PRO
430
A
TYR
431
n
67
TYR
431
A
ILE
432
n
68
ILE
432
A
VAL
433
n
69
VAL
433
A
ARG
434
n
70
ARG
434
A
MET
435
n
71
MET
435
A
ILE
436
n
72
ILE
436
A
GLY
437
n
73
GLY
437
A
ILE
438
n
74
ILE
438
A
CYS
439
n
75
CYS
439
A
GLU
440
n
76
GLU
440
A
ALA
441
n
77
ALA
441
A
GLU
442
n
78
GLU
442
A
SER
443
n
79
SER
443
A
TRP
444
n
80
TRP
444
A
MET
445
n
81
MET
445
A
LEU
446
n
82
LEU
446
A
VAL
447
n
83
VAL
447
A
MET
448
n
84
MET
448
A
GLU
449
n
85
GLU
449
A
MET
450
n
86
MET
450
A
ALA
451
n
87
ALA
451
A
GLU
452
n
88
GLU
452
A
LEU
453
n
89
LEU
453
A
GLY
454
n
90
GLY
454
A
PRO
455
n
91
PRO
455
A
LEU
456
n
92
LEU
456
A
ASN
457
n
93
ASN
457
A
LYS
458
n
94
LYS
458
A
TYR
459
n
95
TYR
459
A
LEU
460
n
96
LEU
460
A
GLN
461
n
97
GLN
461
A
GLN
462
n
98
GLN
462
A
ASN
463
n
99
ASN
463
A
ARG
464
n
100
ARG
464
A
HIS
465
n
101
HIS
465
A
VAL
466
n
102
VAL
466
A
LYS
467
n
103
LYS
467
A
ASP
468
n
104
ASP
468
A
LYS
469
n
105
LYS
469
A
ASN
470
n
106
ASN
470
A
ILE
471
n
107
ILE
471
A
ILE
472
n
108
ILE
472
A
GLU
473
n
109
GLU
473
A
LEU
474
n
110
LEU
474
A
VAL
475
n
111
VAL
475
A
HIS
476
n
112
HIS
476
A
GLN
477
n
113
GLN
477
A
VAL
478
n
114
VAL
478
A
SER
479
n
115
SER
479
A
MET
480
n
116
MET
480
A
GLY
481
n
117
GLY
481
A
MET
482
n
118
MET
482
A
LYS
483
n
119
LYS
483
A
TYR
484
n
120
TYR
484
A
LEU
485
n
121
LEU
485
A
GLU
486
n
122
GLU
486
A
GLU
487
n
123
GLU
487
A
SER
488
n
124
SER
488
A
ASN
489
n
125
ASN
489
A
PHE
490
n
126
PHE
490
A
VAL
491
n
127
VAL
491
A
HIS
492
n
128
HIS
492
A
ARG
493
n
129
ARG
493
A
ASP
494
n
130
ASP
494
A
LEU
495
n
131
LEU
495
A
ALA
496
n
132
ALA
496
A
ALA
497
n
133
ALA
497
A
ARG
498
n
134
ARG
498
A
ASN
499
n
135
ASN
499
A
VAL
500
n
136
VAL
500
A
LEU
501
n
137
LEU
501
A
LEU
502
n
138
LEU
502
A
VAL
503
n
139
VAL
503
A
THR
504
n
140
THR
504
A
GLN
505
n
141
GLN
505
A
HIS
506
n
142
HIS
506
A
TYR
507
n
143
TYR
507
A
ALA
508
n
144
ALA
508
A
LYS
509
n
145
LYS
509
A
ILE
510
n
146
ILE
510
A
SER
511
n
147
SER
511
A
ASP
512
n
148
ASP
512
A
PHE
513
n
149
PHE
513
A
GLY
514
n
150
GLY
514
A
LEU
515
n
151
LEU
515
A
SER
516
n
152
SER
516
A
LYS
517
n
153
LYS
517
A
ALA
518
n
154
ALA
518
A
LEU
519
n
155
LEU
519
A
ARG
520
n
156
ARG
520
A
ALA
521
n
157
ALA
521
A
ASP
522
n
158
ASP
522
A
GLU
523
n
159
GLU
523
A
ASN
524
n
160
ASN
524
A
TYR
525
n
161
TYR
525
A
TYR
526
n
162
TYR
526
A
LYS
527
n
163
LYS
527
A
ALA
528
n
164
ALA
528
A
GLN
529
n
165
GLN
529
A
THR
530
n
166
THR
530
A
HIS
531
n
167
HIS
531
A
GLY
532
n
168
GLY
532
A
LYS
533
n
169
LYS
533
A
TRP
534
n
170
TRP
534
A
PRO
535
n
171
PRO
535
A
VAL
536
n
172
VAL
536
A
LYS
537
n
173
LYS
537
A
TRP
538
n
174
TRP
538
A
TYR
539
n
175
TYR
539
A
ALA
540
n
176
ALA
540
A
PRO
541
n
177
PRO
541
A
GLU
542
n
178
GLU
542
A
CYS
543
n
179
CYS
543
A
ILE
544
n
180
ILE
544
A
ASN
545
n
181
ASN
545
A
TYR
546
n
182
TYR
546
A
TYR
547
n
183
TYR
547
A
LYS
548
n
184
LYS
548
A
PHE
549
n
185
PHE
549
A
SER
550
n
186
SER
550
A
SER
551
n
187
SER
551
A
LYS
552
n
188
LYS
552
A
SER
553
n
189
SER
553
A
ASP
554
n
190
ASP
554
A
VAL
555
n
191
VAL
555
A
TRP
556
n
192
TRP
556
A
SER
557
n
193
SER
557
A
PHE
558
n
194
PHE
558
A
GLY
559
n
195
GLY
559
A
VAL
560
n
196
VAL
560
A
LEU
561
n
197
LEU
561
A
MET
562
n
198
MET
562
A
TRP
563
n
199
TRP
563
A
GLU
564
n
200
GLU
564
A
ALA
565
n
201
ALA
565
A
PHE
566
n
202
PHE
566
A
SER
567
n
203
SER
567
A
TYR
568
n
204
TYR
568
A
GLY
569
n
205
GLY
569
A
GLN
570
n
206
GLN
570
A
LYS
571
n
207
LYS
571
A
PRO
572
n
208
PRO
572
A
TYR
573
n
209
TYR
573
A
ARG
574
n
210
ARG
574
A
GLY
575
n
211
GLY
575
A
MET
576
n
212
MET
576
A
LYS
577
n
213
LYS
577
A
GLY
578
n
214
GLY
578
A
SER
579
n
215
SER
579
A
GLU
580
n
216
GLU
580
A
VAL
581
n
217
VAL
581
A
THR
582
n
218
THR
582
A
ALA
583
n
219
ALA
583
A
MET
584
n
220
MET
584
A
LEU
585
n
221
LEU
585
A
GLU
586
n
222
GLU
586
A
LYS
587
n
223
LYS
587
A
GLY
588
n
224
GLY
588
A
GLU
589
n
225
GLU
589
A
ARG
590
n
226
ARG
590
A
MET
591
n
227
MET
591
A
GLY
592
n
228
GLY
592
A
CYS
593
n
229
CYS
593
A
PRO
594
n
230
PRO
594
A
ALA
595
n
231
ALA
595
A
GLY
596
n
232
GLY
596
A
CYS
597
n
233
CYS
597
A
PRO
598
n
234
PRO
598
A
ARG
599
n
235
ARG
599
A
GLU
600
n
236
GLU
600
A
MET
601
n
237
MET
601
A
TYR
602
n
238
TYR
602
A
ASP
603
n
239
ASP
603
A
LEU
604
n
240
LEU
604
A
MET
605
n
241
MET
605
A
ASN
606
n
242
ASN
606
A
LEU
607
n
243
LEU
607
A
CYS
608
n
244
CYS
608
A
TRP
609
n
245
TRP
609
A
THR
610
n
246
THR
610
A
TYR
611
n
247
TYR
611
A
ASP
612
n
248
ASP
612
A
VAL
613
n
249
VAL
613
A
GLU
614
n
250
GLU
614
A
ASN
615
n
251
ASN
615
A
ARG
616
n
252
ARG
616
A
PRO
617
n
253
PRO
617
A
GLY
618
n
254
GLY
618
A
PHE
619
n
255
PHE
619
A
ALA
620
n
256
ALA
620
A
ALA
621
n
257
ALA
621
A
VAL
622
n
258
VAL
622
A
GLU
623
n
259
GLU
623
A
LEU
624
n
260
LEU
624
A
ARG
625
n
261
ARG
625
A
LEU
626
n
262
LEU
626
A
ARG
627
n
263
ARG
627
A
ASN
628
n
264
ASN
628
A
TYR
629
n
265
TYR
629
A
TYR
630
n
266
TYR
630
A
TYR
631
n
267
TYR
631
A
ASP
632
n
268
ASP
632
A
VAL
633
n
269
VAL
633
A
VAL
634
n
270
VAL
634
A
ASN
635
n
271
ASN
635
A
GLU
636
n
272
GLU
636
A
GLY
637
n
273
GLY
637
A
3.6623
1.9378
-4.1751
4.8349
0.6307
6.8768
-1.3181
0.8832
-0.6110
-1.2699
0.4902
-0.7338
1.9068
-0.9897
0.8280
0.6221
-0.2842
0.4178
0.2484
0.0151
0.4988
refined
11.514
-2.186
10.519
X-RAY DIFFRACTION
5.9654
2.5068
-3.0254
7.4247
-3.8353
4.0758
-0.0103
0.0677
0.3951
0.3459
0.2569
0.0818
-0.2456
-0.2423
-0.2465
-0.2749
0.0220
-0.0087
-0.2179
-0.0441
-0.3390
refined
0.561
15.915
23.398
X-RAY DIFFRACTION
A
365
A
450
X-RAY DIFFRACTION
1
A
451
A
637
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
378
A
N
GLY
14
A
O
VAL
385
A
O
VAL
21
A
N
THR
384
A
N
THR
20
A
O
ILE
403
A
O
ILE
39
A
N
ALA
400
A
N
ALA
36
A
O
MET
448
A
O
MET
84
A
O
VAL
447
A
O
VAL
83
A
N
GLY
437
A
N
GLY
73
A
N
GLY
454
A
N
GLY
90
A
O
LEU
502
A
O
LEU
138
A
N
VAL
503
A
N
VAL
139
A
O
TYR
507
A
O
TYR
143
A
N
VAL
491
A
N
VAL
127
A
O
LYS
517
A
O
LYS
153
A
N
TYR
526
A
N
TYR
162
A
O
PHE
549
A
O
PHE
185
1
A
CG
ASN
381
A
CG
ASN
17
0
Y
1
A
OD1
ASN
381
A
OD1
ASN
17
0
Y
1
A
ND2
ASN
381
A
ND2
ASN
17
0
Y
1
A
CG
PHE
382
A
CG
PHE
18
0
Y
1
A
CD1
PHE
382
A
CD1
PHE
18
0
Y
1
A
CD2
PHE
382
A
CD2
PHE
18
0
Y
1
A
CE1
PHE
382
A
CE1
PHE
18
0
Y
1
A
CE2
PHE
382
A
CE2
PHE
18
0
Y
1
A
CZ
PHE
382
A
CZ
PHE
18
0
Y
1
A
CG
LYS
405
A
CG
LYS
41
0
Y
1
A
CD
LYS
405
A
CD
LYS
41
0
Y
1
A
CE
LYS
405
A
CE
LYS
41
0
Y
1
A
NZ
LYS
405
A
NZ
LYS
41
0
Y
1
A
CG
LEU
413
A
CG
LEU
49
0
Y
1
A
CD1
LEU
413
A
CD1
LEU
49
0
Y
1
A
CD2
LEU
413
A
CD2
LEU
49
0
Y
1
A
NE
ARG
464
A
NE
ARG
100
0
Y
1
A
CZ
ARG
464
A
CZ
ARG
100
0
Y
1
A
NH1
ARG
464
A
NH1
ARG
100
0
Y
1
A
NH2
ARG
464
A
NH2
ARG
100
0
Y
1
A
CD
GLN
529
A
CD
GLN
165
0
Y
1
A
OE1
GLN
529
A
OE1
GLN
165
0
Y
1
A
NE2
GLN
529
A
NE2
GLN
165
0
Y
1
A
CG
LYS
533
A
CG
LYS
169
0
Y
1
A
CD
LYS
533
A
CD
LYS
169
0
Y
1
A
CE
LYS
533
A
CE
LYS
169
0
Y
1
A
NZ
LYS
533
A
NZ
LYS
169
0
Y
1
A
TYR
390
A
TYR
26
1
Y
1
A
GLN
391
A
GLN
27
1
Y
1
A
MET
392
A
MET
28
1
Y
1
A
LYS
393
A
LYS
29
1
Y
1
A
LYS
394
A
LYS
30
1
Y
1
A
VAL
395
A
VAL
31
1
Y
1
A
ASN
406
A
ASN
42
1
Y
1
A
GLU
407
A
GLU
43
1
Y
1
A
ALA
408
A
ALA
44
1
Y
1
A
ASN
409
A
ASN
45
1
Y
1
A
ASP
410
A
ASP
46
1
Y
1
A
ALA
441
-151.69
-129.37
1
A
ASP
494
-151.49
37.39
1
A
ASP
512
62.38
80.95
1
A
ASP
512
61.56
80.95
1
A
TRP
609
-89.58
39.20
118.060
63.765
20.080
-0.0400
0.0000
0.0000
-4.2300
0.0000
4.2700
0.9280
0.8900
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2846
0.2385
0.2409
2.3700
38.1200
608
12074
5.0000
95.0200
1.000
0.000
26.3380
0.2910
RANDOM
1
THROUGHOUT
0.000
0.5160
0.3040
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.3700
38.1200
21
2176
34
0
2121
0.008
0.022
2200
0.001
0.020
1958
1.045
1.977
2974
0.720
3.000
4559
5.742
5.000
265
34.580
24.343
99
14.944
15.000
387
18.692
15.000
11
0.062
0.200
311
0.004
0.020
2432
0.003
0.020
453
0.193
0.200
486
0.176
0.200
2105
0.181
0.200
1080
0.083
0.200
1138
0.158
0.200
66
0.029
0.200
1
0.090
0.200
7
0.197
0.200
31
0.138
0.200
4
1.626
2.000
1722
0.335
2.000
541
2.066
3.000
2105
3.234
4.000
1079
4.336
6.000
869
0.4320
0.3350
2.4310
39
805
844
20
95.3700
2.370
38.120
4F4P
12709
0.000
0.088
1
5.100
94.700
0.788
2.370
2.570
1
4.000
94.500
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0005
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
XDS
data scaling
XSCALE
SYK in COMPLEX WITH LIGAND LASW836
1
N
N
2
N
N
3
N
N
4
N
N
A
ASP
366
A
ASP
2
HELX_P
A
LEU
370
A
LEU
6
5
1
5
A
ALA
412
A
ALA
48
HELX_P
A
GLN
426
A
GLN
62
1
2
15
A
LEU
456
A
LEU
92
HELX_P
A
ASN
463
A
ASN
99
1
3
8
A
LYS
467
A
LYS
103
HELX_P
A
SER
488
A
SER
124
1
4
22
A
ALA
496
A
ALA
132
HELX_P
A
ARG
498
A
ARG
134
5
5
3
A
PRO
535
A
PRO
171
HELX_P
A
TYR
539
A
TYR
175
5
6
5
A
ALA
540
A
ALA
176
HELX_P
A
TYR
547
A
TYR
183
1
7
8
A
SER
550
A
SER
186
HELX_P
A
SER
567
A
SER
203
1
8
18
A
LYS
577
A
LYS
213
HELX_P
A
GLY
588
A
GLY
224
1
9
12
A
PRO
598
A
PRO
234
HELX_P
A
TRP
609
A
TRP
245
1
10
12
A
GLY
618
A
GLY
254
HELX_P
A
GLY
637
A
GLY
273
1
11
20
TRANSFERASE/TRANSFERASE INHIBITOR
Tyrosine-protein kinase, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR complex
KSYK_HUMAN
UNP
1
365
P43405
LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESW
MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN
YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDL
MNLCWTYDVENRPGFAAVELRLRNYYYDVVN
365
635
4F4P
365
635
P43405
A
1
1
271
1
expression tag
GLU
636
4F4P
A
P43405
UNP
272
1
expression tag
GLY
637
4F4P
A
P43405
UNP
273
5
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
378
A
GLY
14
A
SER
379
A
SER
15
A
GLY
383
A
GLY
19
A
GLY
388
A
GLY
24
A
VAL
399
A
VAL
35
A
LEU
404
A
LEU
40
A
TRP
444
A
TRP
80
A
GLU
449
A
GLU
85
A
MET
435
A
MET
71
A
GLU
440
A
GLU
76
A
GLY
454
A
GLY
90
A
PRO
455
A
PRO
91
A
VAL
500
A
VAL
136
A
THR
504
A
THR
140
A
TYR
507
A
TYR
143
A
ILE
510
A
ILE
146
A
PHE
490
A
PHE
126
A
VAL
491
A
VAL
127
A
LYS
517
A
LYS
153
A
ALA
518
A
ALA
154
A
TYR
526
A
TYR
162
A
LYS
527
A
LYS
163
A
LYS
548
A
LYS
184
A
PHE
549
A
PHE
185
BINDING SITE FOR RESIDUE 0SB A 701
A
0SB
701
Software
14
BINDING SITE FOR RESIDUE SO4 A 702
A
SO4
702
Software
5
A
GLY
378
A
GLY
14
14
1_555
A
VAL
385
A
VAL
21
14
1_555
A
ALA
400
A
ALA
36
14
1_555
A
MET
448
A
MET
84
14
1_555
A
GLU
449
A
GLU
85
14
1_555
A
MET
450
A
MET
86
14
1_555
A
ALA
451
A
ALA
87
14
1_555
A
GLY
454
A
GLY
90
14
1_555
A
PRO
455
A
PRO
91
14
1_555
A
ARG
498
A
ARG
134
14
1_555
A
ASN
499
A
ASN
135
14
1_555
A
LEU
501
A
LEU
137
14
1_555
A
SER
511
A
SER
147
14
1_555
A
ASP
512
A
ASP
148
14
1_555
A
ARG
493
A
ARG
129
5
1_555
A
TYR
526
A
TYR
162
5
1_555
A
ALA
528
A
ALA
164
5
1_555
A
THR
530
A
THR
166
5
1_555
A
TRP
534
A
TRP
170
5
1_555
19
P 21 21 21