0.008033 0.000000 0.000000 0.000000 0.008033 0.000000 0.000000 0.000000 0.014190 0.00000 0.00000 0.00000 Pata, J.D. Wilson, R.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 124.482 124.482 70.474 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N O N 90 N P N 91 N O N 92 N O N 93 N O N 94 N C N 95 R C N 96 N O N 97 S C N 98 N O N 99 N C N 100 R C Y 101 N N Y 102 N C Y 103 N N Y 104 N C Y 105 N C N 106 N N Y 107 N N Y 108 N C Y 109 N N Y 110 N C N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N O N 126 N P N 127 N O N 128 N O N 129 N O N 130 N C N 131 R C N 132 N O N 133 S C N 134 N O N 135 N C N 136 R C N 137 N N N 138 N C N 139 N O N 140 N N N 141 N C N 142 N N N 143 N C N 144 N C N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N P N 161 N O N 162 N O N 163 N O N 164 N C N 165 R C N 166 N O N 167 S C N 168 N O N 169 N C N 170 R C Y 171 N N Y 172 N C Y 173 N N Y 174 N C N 175 N C N 176 N O N 177 N N N 178 N C N 179 N N N 180 N N Y 181 N C N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N P N 198 N O N 199 N O N 200 N O N 201 N C N 202 R C N 203 N O N 204 S C N 205 N O N 206 N C N 207 R C N 208 N N N 209 N C N 210 N O N 211 N N N 212 N C N 213 N O N 214 N C N 215 N C N 216 N C N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N O N 240 N N N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C N 257 N C N 258 N C N 259 N O N 260 N O N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 N C N 273 N C N 274 N O N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C Y 286 N C Y 287 N N Y 288 N C Y 289 N C Y 290 N N N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N O N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 S C N 310 N C N 311 N C N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N C N 355 N C N 356 N C N 357 N N N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N S N 381 N C N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C N 422 N C N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C N 439 N O N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N N N 449 S C N 450 N C N 451 N O N 452 R C N 453 N O N 454 N C N 455 N O N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N N N 466 S C N 467 N C N 468 N O N 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C Y 475 N C N 476 N O N 477 N O N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N N N 490 S C N 491 N C N 492 N O N 493 N C N 494 N C N 495 N C N 496 N O N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing UK Structure STRUE6 2005 0969-2126 21 20 31 10.1016/j.str.2012.11.005 23245850 Y-family polymerase conformation is a major determinant of fidelity and translesion specificity. 2013 10.2210/pdb4f50/pdb pdb_00004f50 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-10-18 ADSC QUANTUM 315 Si(111) SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 X25 NSLS 0.9795 SYNCHROTRON NSLS BEAMLINE X25 41018.609 DNA polymerase IV 2.7.7.7 1 man polymer Primer DNA 3424.236 DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*CP*GP*GP*C)-3') 1 syn polymer Template DNA 4168.692 DNA (5'-D(*CP*CP*GP*CP*CP*T*GP*GP*CP*TP*TP*CP*CP*C)-3') 1 syn polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 74 nat water Pol IV no no MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLL QKILEEDERKIRRIGVRFSKFIEAIGLDKFFDTGGHHHHHH MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLL QKILEEDERKIRRIGVRFSKFIEAIGLDKFFDTGGHHHHHH A polypeptide(L) no no (DG)(DG)(DG)(DA)(DA)(DG)(DC)(DC)(DG)(DG)(DC) GGGAAGCCGGC P polydeoxyribonucleotide no no (DC)(DC)(DG)(DC)(DC)(DT)(DG)(DG)(DC)(DT)(DT)(DC)(DC)(DC) CCGCCTGGCTTCCC T polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770 sample 1 246 dbh, dpo4, Dpo4 (S. solfataricus) and Dbh (S. acidocaldarius), Saci_0554, SSO24 48 330779 Sulfolobus acidocaldarius 562 Escherichia coli BLR(DE3)pLysS pKKT7-H ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770 sample 247 353 dbh, dpo4, Dpo4 (S. solfataricus) and Dbh (S. acidocaldarius), Saci_0554, SSO24 48 273057 Sulfolobus solfataricus 562 Escherichia coli BLR(DE3)pLysS pKKT7-H 1 2.81 56.20 VAPOR DIFFUSION, HANGING DROP 7.1 10% PEG-3350, 100 mM Ca(OAc)2, 100 mM HEPES, 2.5% Glycerol, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 0.476 1 19 P 1 T 14 -2.681 P_DG1:DC14_T 1 -6.438 -0.369 0.411 -0.223 14.724 1 19 P 2 T 13 1.030 P_DG2:DC13_T 2 -3.949 -0.041 0.612 -0.038 3.855 1 19 P 3 T 12 -1.531 P_DG3:DC12_T 3 -14.913 -0.335 0.103 -0.126 -5.110 1 20 P 4 T 11 0.648 P_DA4:DT11_T 4 -15.893 -0.191 -0.136 0.023 -2.550 1 20 P 5 T 10 0.304 P_DA5:DT10_T 5 -15.309 -0.052 0.032 -0.247 -0.233 1 19 P 6 T 9 -4.028 P_DG6:DC9_T 6 -14.095 0.137 0.039 -0.101 4.004 1 19 P 7 T 8 -0.891 P_DC7:DG8_T 7 -9.527 0.081 -0.158 -0.028 -0.959 1 19 P 8 T 7 -0.005 P_DC8:DG7_T 8 -10.148 0.179 0.088 0.162 -8.871 1 19 P 9 T 5 -3.943 P_DG9:DC5_T 9 -6.822 -0.109 -0.594 -0.154 7.596 1 19 P 10 T 4 -2.833 P_DG10:DC4_T 10 -6.146 -0.089 0.239 -0.008 11.405 1 19 P 11 T 3 -2.799 P_DC11:DG3_T 11 -1.431 0.250 -0.303 0.221 3.017 30.743 P P 1 2 1.850 T T 14 13 3.043 0.980 0.904 -0.143 PP_DG1DG2:DC13DC14_TT 1 -0.704 1.328 30.720 -0.448 -1.832 3.553 36.206 P P 2 3 5.340 T T 13 12 3.592 3.314 -0.957 -0.192 PP_DG2DG3:DC12DC13_TT 2 0.281 -0.453 36.058 -0.818 1.583 3.300 42.329 P P 3 4 4.609 T T 12 11 3.328 3.324 -0.136 -0.156 PP_DG3DA4:DT11DC12_TT 3 1.650 -2.288 42.173 -0.560 0.359 3.198 32.418 P P 4 5 2.674 T T 11 10 3.206 1.491 -0.165 -0.197 PP_DA4DA5:DT10DT11_TT 4 -2.169 3.889 32.314 -0.611 -0.079 3.308 32.412 P P 5 6 6.496 T T 10 9 3.322 3.619 -0.102 0.048 PP_DA5DG6:DC9DT10_TT 5 -0.224 0.402 32.214 -0.561 0.143 2.899 33.297 P P 6 7 12.756 T T 9 8 3.065 7.251 0.481 -0.538 PP_DG6DC7:DG8DC9_TT 6 1.425 -2.507 32.489 -2.054 -0.620 3.401 38.864 P P 7 8 9.633 T T 8 7 3.486 6.383 0.298 -0.276 PP_DC7DC8:DG7DG8_TT 7 0.465 -0.702 38.354 -1.238 -0.388 3.872 41.651 P P 8 9 13.084 T T 7 5 3.550 9.139 1.320 0.906 PP_DC8DG9:DC5DG7_TT 8 10.495 -15.024 39.355 0.145 -0.559 2.921 38.043 P P 9 10 2.063 T T 5 4 2.877 1.334 -0.346 1.123 PP_DG9DG10:DC4DC5_TT 9 -8.285 12.808 37.139 1.571 -0.415 3.312 37.357 P P 10 11 -3.108 T T 4 3 3.270 -1.985 0.602 0.024 PP_DG10DC11:DG3DC4_TT 10 4.545 -7.116 37.037 0.303 -0.334 entity_src_gen software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Source and taxonomy Source and taxonomy Refinement description Source and taxonomy Data collection Database references Derived calculations 1 0 2013-01-02 1 1 2013-02-13 1 2 2014-01-29 1 3 2014-02-12 1 4 2017-08-16 1 5 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-05-11 REL REL CA CALCIUM ION HOH water CA 1 4 CA CA 401 A HOH 1 5 HOH HOH 501 A HOH 2 5 HOH HOH 502 A HOH 3 5 HOH HOH 503 A HOH 4 5 HOH HOH 504 A HOH 5 5 HOH HOH 505 A HOH 6 5 HOH HOH 506 A HOH 7 5 HOH HOH 507 A HOH 8 5 HOH HOH 508 A HOH 9 5 HOH HOH 509 A HOH 10 5 HOH HOH 510 A HOH 11 5 HOH HOH 511 A HOH 12 5 HOH HOH 512 A HOH 14 5 HOH HOH 513 A HOH 16 5 HOH HOH 514 A HOH 17 5 HOH HOH 515 A HOH 18 5 HOH HOH 516 A HOH 20 5 HOH HOH 517 A HOH 21 5 HOH HOH 518 A HOH 22 5 HOH HOH 519 A HOH 23 5 HOH HOH 520 A HOH 24 5 HOH HOH 521 A HOH 26 5 HOH HOH 522 A HOH 27 5 HOH HOH 523 A HOH 28 5 HOH HOH 524 A HOH 29 5 HOH HOH 525 A HOH 30 5 HOH HOH 526 A HOH 32 5 HOH HOH 527 A HOH 33 5 HOH HOH 528 A HOH 34 5 HOH HOH 529 A HOH 37 5 HOH HOH 530 A HOH 39 5 HOH HOH 531 A HOH 40 5 HOH HOH 532 A HOH 42 5 HOH HOH 533 A HOH 43 5 HOH HOH 534 A HOH 46 5 HOH HOH 535 A HOH 47 5 HOH HOH 536 A HOH 48 5 HOH HOH 537 A HOH 49 5 HOH HOH 538 A HOH 50 5 HOH HOH 539 A HOH 52 5 HOH HOH 540 A HOH 53 5 HOH HOH 541 A HOH 55 5 HOH HOH 542 A HOH 56 5 HOH HOH 543 A HOH 59 5 HOH HOH 544 A HOH 60 5 HOH HOH 545 A HOH 61 5 HOH HOH 546 A HOH 62 5 HOH HOH 547 A HOH 63 5 HOH HOH 548 A HOH 64 5 HOH HOH 549 A HOH 65 5 HOH HOH 550 A HOH 66 5 HOH HOH 551 A HOH 68 5 HOH HOH 552 A HOH 69 5 HOH HOH 553 A HOH 70 5 HOH HOH 554 A HOH 72 5 HOH HOH 555 A HOH 73 5 HOH HOH 556 A HOH 74 5 HOH HOH 557 A HOH 35 5 HOH HOH 101 P HOH 45 5 HOH HOH 102 P HOH 54 5 HOH HOH 103 P HOH 58 5 HOH HOH 104 P HOH 13 5 HOH HOH 101 T HOH 15 5 HOH HOH 102 T HOH 19 5 HOH HOH 103 T HOH 25 5 HOH HOH 104 T HOH 31 5 HOH HOH 105 T HOH 36 5 HOH HOH 106 T HOH 38 5 HOH HOH 107 T HOH 41 5 HOH HOH 108 T HOH 44 5 HOH HOH 109 T HOH 51 5 HOH HOH 110 T HOH 57 5 HOH HOH 111 T HOH 67 5 HOH HOH 112 T HOH 71 5 HOH HOH 113 T MET 1 n 1 MET 1 A ILE 2 n 2 ILE 2 A VAL 3 n 3 VAL 3 A ILE 4 n 4 ILE 4 A PHE 5 n 5 PHE 5 A VAL 6 n 6 VAL 6 A ASP 7 n 7 ASP 7 A PHE 8 n 8 PHE 8 A ASP 9 n 9 ASP 9 A TYR 10 n 10 TYR 10 A PHE 11 n 11 PHE 11 A PHE 12 n 12 PHE 12 A ALA 13 n 13 ALA 13 A GLN 14 n 14 GLN 14 A VAL 15 n 15 VAL 15 A GLU 16 n 16 GLU 16 A GLU 17 n 17 GLU 17 A VAL 18 n 18 VAL 18 A LEU 19 n 19 LEU 19 A ASN 20 n 20 ASN 20 A PRO 21 n 21 PRO 21 A GLN 22 n 22 GLN 22 A TYR 23 n 23 TYR 23 A LYS 24 n 24 LYS 24 A GLY 25 n 25 GLY 25 A LYS 26 n 26 LYS 26 A PRO 27 n 27 PRO 27 A LEU 28 n 28 LEU 28 A VAL 29 n 29 VAL 29 A VAL 30 n 30 VAL 30 A CYS 31 n 31 CYS 31 A VAL 32 n 32 VAL 32 A TYR 33 n 33 TYR 33 A SER 34 n 34 SER 34 A n 35 35 A n 36 36 A n 37 37 A n 38 38 A n 39 39 A SER 40 n 40 SER 40 A GLY 41 n 41 GLY 41 A ALA 42 n 42 ALA 42 A VAL 43 n 43 VAL 43 A ALA 44 n 44 ALA 44 A THR 45 n 45 THR 45 A ALA 46 n 46 ALA 46 A ASN 47 n 47 ASN 47 A TYR 48 n 48 TYR 48 A GLU 49 n 49 GLU 49 A ALA 50 n 50 ALA 50 A ARG 51 n 51 ARG 51 A LYS 52 n 52 LYS 52 A LEU 53 n 53 LEU 53 A GLY 54 n 54 GLY 54 A VAL 55 n 55 VAL 55 A LYS 56 n 56 LYS 56 A ALA 57 n 57 ALA 57 A GLY 58 n 58 GLY 58 A MET 59 n 59 MET 59 A PRO 60 n 60 PRO 60 A ILE 61 n 61 ILE 61 A ILE 62 n 62 ILE 62 A LYS 63 n 63 LYS 63 A ALA 64 n 64 ALA 64 A MET 65 n 65 MET 65 A GLN 66 n 66 GLN 66 A ILE 67 n 67 ILE 67 A ALA 68 n 68 ALA 68 A PRO 69 n 69 PRO 69 A SER 70 n 70 SER 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A TYR 73 n 73 TYR 73 A VAL 74 n 74 VAL 74 A PRO 75 n 75 PRO 75 A MET 76 n 76 MET 76 A ARG 77 n 77 ARG 77 A LYS 78 n 78 LYS 78 A PRO 79 n 79 PRO 79 A ILE 80 n 80 ILE 80 A TYR 81 n 81 TYR 81 A GLU 82 n 82 GLU 82 A ALA 83 n 83 ALA 83 A PHE 84 n 84 PHE 84 A SER 85 n 85 SER 85 A ASN 86 n 86 ASN 86 A ARG 87 n 87 ARG 87 A ILE 88 n 88 ILE 88 A MET 89 n 89 MET 89 A ASN 90 n 90 ASN 90 A LEU 91 n 91 LEU 91 A LEU 92 n 92 LEU 92 A ASN 93 n 93 ASN 93 A LYS 94 n 94 LYS 94 A HIS 95 n 95 HIS 95 A ALA 96 n 96 ALA 96 A ASP 97 n 97 ASP 97 A LYS 98 n 98 LYS 98 A ILE 99 n 99 ILE 99 A GLU 100 n 100 GLU 100 A VAL 101 n 101 VAL 101 A ALA 102 n 102 ALA 102 A SER 103 n 103 SER 103 A ILE 104 n 104 ILE 104 A ASP 105 n 105 ASP 105 A GLU 106 n 106 GLU 106 A ALA 107 n 107 ALA 107 A TYR 108 n 108 TYR 108 A LEU 109 n 109 LEU 109 A ASP 110 n 110 ASP 110 A VAL 111 n 111 VAL 111 A THR 112 n 112 THR 112 A ASN 113 n 113 ASN 113 A LYS 114 n 114 LYS 114 A VAL 115 n 115 VAL 115 A GLU 116 n 116 GLU 116 A GLY 117 n 117 GLY 117 A ASN 118 n 118 ASN 118 A PHE 119 n 119 PHE 119 A GLU 120 n 120 GLU 120 A ASN 121 n 121 ASN 121 A GLY 122 n 122 GLY 122 A ILE 123 n 123 ILE 123 A GLU 124 n 124 GLU 124 A LEU 125 n 125 LEU 125 A ALA 126 n 126 ALA 126 A ARG 127 n 127 ARG 127 A LYS 128 n 128 LYS 128 A ILE 129 n 129 ILE 129 A LYS 130 n 130 LYS 130 A GLN 131 n 131 GLN 131 A GLU 132 n 132 GLU 132 A ILE 133 n 133 ILE 133 A LEU 134 n 134 LEU 134 A GLU 135 n 135 GLU 135 A LYS 136 n 136 LYS 136 A GLU 137 n 137 GLU 137 A LYS 138 n 138 LYS 138 A ILE 139 n 139 ILE 139 A THR 140 n 140 THR 140 A VAL 141 n 141 VAL 141 A THR 142 n 142 THR 142 A VAL 143 n 143 VAL 143 A GLY 144 n 144 GLY 144 A VAL 145 n 145 VAL 145 A ALA 146 n 146 ALA 146 A PRO 147 n 147 PRO 147 A ASN 148 n 148 ASN 148 A LYS 149 n 149 LYS 149 A ILE 150 n 150 ILE 150 A LEU 151 n 151 LEU 151 A ALA 152 n 152 ALA 152 A LYS 153 n 153 LYS 153 A ILE 154 n 154 ILE 154 A ILE 155 n 155 ILE 155 A ALA 156 n 156 ALA 156 A ASP 157 n 157 ASP 157 A LYS 158 n 158 LYS 158 A SER 159 n 159 SER 159 A LYS 160 n 160 LYS 160 A PRO 161 n 161 PRO 161 A ASN 162 n 162 ASN 162 A GLY 163 n 163 GLY 163 A LEU 164 n 164 LEU 164 A GLY 165 n 165 GLY 165 A VAL 166 n 166 VAL 166 A ILE 167 n 167 ILE 167 A ARG 168 n 168 ARG 168 A PRO 169 n 169 PRO 169 A THR 170 n 170 THR 170 A GLU 171 n 171 GLU 171 A VAL 172 n 172 VAL 172 A GLN 173 n 173 GLN 173 A ASP 174 n 174 ASP 174 A PHE 175 n 175 PHE 175 A LEU 176 n 176 LEU 176 A ASN 177 n 177 ASN 177 A GLU 178 n 178 GLU 178 A LEU 179 n 179 LEU 179 A ASP 180 n 180 ASP 180 A ILE 181 n 181 ILE 181 A ASP 182 n 182 ASP 182 A GLU 183 n 183 GLU 183 A ILE 184 n 184 ILE 184 A PRO 185 n 185 PRO 185 A GLY 186 n 186 GLY 186 A ILE 187 n 187 ILE 187 A GLY 188 n 188 GLY 188 A SER 189 n 189 SER 189 A VAL 190 n 190 VAL 190 A LEU 191 n 191 LEU 191 A ALA 192 n 192 ALA 192 A ARG 193 n 193 ARG 193 A ARG 194 n 194 ARG 194 A LEU 195 n 195 LEU 195 A ASN 196 n 196 ASN 196 A GLU 197 n 197 GLU 197 A LEU 198 n 198 LEU 198 A GLY 199 n 199 GLY 199 A ILE 200 n 200 ILE 200 A GLN 201 n 201 GLN 201 A LYS 202 n 202 LYS 202 A LEU 203 n 203 LEU 203 A ARG 204 n 204 ARG 204 A ASP 205 n 205 ASP 205 A ILE 206 n 206 ILE 206 A LEU 207 n 207 LEU 207 A SER 208 n 208 SER 208 A LYS 209 n 209 LYS 209 A ASN 210 n 210 ASN 210 A TYR 211 n 211 TYR 211 A ASN 212 n 212 ASN 212 A GLU 213 n 213 GLU 213 A LEU 214 n 214 LEU 214 A GLU 215 n 215 GLU 215 A LYS 216 n 216 LYS 216 A ILE 217 n 217 ILE 217 A THR 218 n 218 THR 218 A GLY 219 n 219 GLY 219 A LYS 220 n 220 LYS 220 A ALA 221 n 221 ALA 221 A LYS 222 n 222 LYS 222 A ALA 223 n 223 ALA 223 A LEU 224 n 224 LEU 224 A TYR 225 n 225 TYR 225 A LEU 226 n 226 LEU 226 A LEU 227 n 227 LEU 227 A LYS 228 n 228 LYS 228 A LEU 229 n 229 LEU 229 A ALA 230 n 230 ALA 230 A GLN 231 n 231 GLN 231 A ASN 232 n 232 ASN 232 A LYS 233 n 233 LYS 233 A TYR 234 n 234 TYR 234 A SER 235 n 235 SER 235 A GLU 236 n 236 GLU 236 A PRO 237 n 237 PRO 237 A VAL 238 n 238 VAL 238 A GLU 239 n 239 GLU 239 A ASN 240 n 240 ASN 240 A LYS 241 n 241 LYS 241 A SER 242 n 242 SER 242 A LYS 243 n 243 LYS 243 A ILE 244 n 244 ILE 244 A PRO 245 n 245 PRO 245 A HIS 246 n 246 HIS 246 A GLY 247 n 247 GLY 247 A ARG 248 n 248 ARG 248 A ILE 249 n 249 ILE 249 A VAL 250 n 250 VAL 250 A THR 251 n 251 THR 251 A MET 252 n 252 MET 252 A LYS 253 n 253 LYS 253 A ARG 254 n 254 ARG 254 A ASN 255 n 255 ASN 255 A SER 256 n 256 SER 256 A ARG 257 n 257 ARG 257 A ASN 258 n 258 ASN 258 A LEU 259 n 259 LEU 259 A GLU 260 n 260 GLU 260 A GLU 261 n 261 GLU 261 A ILE 262 n 262 ILE 262 A LYS 263 n 263 LYS 263 A PRO 264 n 264 PRO 264 A TYR 265 n 265 TYR 265 A LEU 266 n 266 LEU 266 A PHE 267 n 267 PHE 267 A ARG 268 n 268 ARG 268 A ALA 269 n 269 ALA 269 A ILE 270 n 270 ILE 270 A GLU 271 n 271 GLU 271 A GLU 272 n 272 GLU 272 A SER 273 n 273 SER 273 A TYR 274 n 274 TYR 274 A TYR 275 n 275 TYR 275 A LYS 276 n 276 LYS 276 A LEU 277 n 277 LEU 277 A ASP 278 n 278 ASP 278 A LYS 279 n 279 LYS 279 A ARG 280 n 280 ARG 280 A ILE 281 n 281 ILE 281 A PRO 282 n 282 PRO 282 A LYS 283 n 283 LYS 283 A ALA 284 n 284 ALA 284 A ILE 285 n 285 ILE 285 A HIS 286 n 286 HIS 286 A VAL 287 n 287 VAL 287 A VAL 288 n 288 VAL 288 A ALA 289 n 289 ALA 289 A VAL 290 n 290 VAL 290 A THR 291 n 291 THR 291 A GLU 292 n 292 GLU 292 A ASP 293 n 293 ASP 293 A LEU 294 n 294 LEU 294 A ASP 295 n 295 ASP 295 A ILE 296 n 296 ILE 296 A VAL 297 n 297 VAL 297 A SER 298 n 298 SER 298 A ARG 299 n 299 ARG 299 A GLY 300 n 300 GLY 300 A ARG 301 n 301 ARG 301 A THR 302 n 302 THR 302 A PHE 303 n 303 PHE 303 A PRO 304 n 304 PRO 304 A HIS 305 n 305 HIS 305 A GLY 306 n 306 GLY 306 A ILE 307 n 307 ILE 307 A SER 308 n 308 SER 308 A LYS 309 n 309 LYS 309 A GLU 310 n 310 GLU 310 A THR 311 n 311 THR 311 A ALA 312 n 312 ALA 312 A TYR 313 n 313 TYR 313 A SER 314 n 314 SER 314 A GLU 315 n 315 GLU 315 A SER 316 n 316 SER 316 A VAL 317 n 317 VAL 317 A LYS 318 n 318 LYS 318 A LEU 319 n 319 LEU 319 A LEU 320 n 320 LEU 320 A GLN 321 n 321 GLN 321 A LYS 322 n 322 LYS 322 A ILE 323 n 323 ILE 323 A LEU 324 n 324 LEU 324 A GLU 325 n 325 GLU 325 A GLU 326 n 326 GLU 326 A ASP 327 n 327 ASP 327 A GLU 328 n 328 GLU 328 A ARG 329 n 329 ARG 329 A LYS 330 n 330 LYS 330 A ILE 331 n 331 ILE 331 A ARG 332 n 332 ARG 332 A ARG 333 n 333 ARG 333 A ILE 334 n 334 ILE 334 A GLY 335 n 335 GLY 335 A VAL 336 n 336 VAL 336 A ARG 337 n 337 ARG 337 A PHE 338 n 338 PHE 338 A SER 339 n 339 SER 339 A LYS 340 n 340 LYS 340 A PHE 341 n 341 PHE 341 A ILE 342 n 342 ILE 342 A n 343 343 A n 344 344 A n 345 345 A n 346 346 A n 347 347 A n 348 348 A n 349 349 A n 350 350 A n 351 351 A n 352 352 A n 353 353 A n 354 354 A n 355 355 A n 356 356 A n 357 357 A n 358 358 A n 359 359 A n 360 360 A n 361 361 A G 1 n 1 DG 1 P G 2 n 2 DG 2 P G 3 n 3 DG 3 P A 4 n 4 DA 4 P A 5 n 5 DA 5 P G 6 n 6 DG 6 P C 7 n 7 DC 7 P C 8 n 8 DC 8 P G 9 n 9 DG 9 P G 10 n 10 DG 10 P C 11 n 11 DC 11 P C 1 n 1 DC 1 T n 2 2 T G 3 n 3 DG 3 T C 4 n 4 DC 4 T C 5 n 5 DC 5 T T 6 n 6 DT 6 T G 7 n 7 DG 7 T G 8 n 8 DG 8 T C 9 n 9 DC 9 T T 10 n 10 DT 10 T T 11 n 11 DT 11 T C 12 n 12 DC 12 T C 13 n 13 DC 13 T C 14 n 14 DC 14 T 0.2579 -0.6328 0.0408 3.1986 0.1794 -0.0084 0.0334 0.6333 0.0414 0.1374 0.0081 -0.6212 0.1531 0.0868 0.0007 0.9725 0.2848 -0.0172 0.5375 -0.1502 0.6557 refined -27.0936 2.0114 -14.7811 X-RAY DIFFRACTION 0.9398 0.3095 -0.7698 4.0786 -0.1451 4.0844 0.0116 -0.1221 -0.1299 0.9108 0.4240 0.2072 0.0937 -0.1675 -0.2642 0.4410 0.1667 0.1114 0.4103 0.0593 0.3495 refined -36.3451 -24.1286 -15.9354 X-RAY DIFFRACTION 3.3590 0.1743 -0.5364 3.2475 -0.5293 3.1603 -0.2975 -0.4884 0.4510 1.8227 0.2211 -0.1879 -0.3459 0.3262 0.1195 1.4249 0.2679 -0.1239 0.5594 -0.0363 0.4967 refined -29.3451 -8.0505 2.3041 X-RAY DIFFRACTION 1.7118 0.2857 0.1697 3.8364 -2.5482 6.0726 -0.5376 1.1683 1.0738 -0.0486 0.9103 1.1076 -0.2310 -0.9642 -0.4701 1.0635 0.0176 -0.0435 1.2246 0.5747 0.9150 refined -43.0788 3.0150 -29.8541 X-RAY DIFFRACTION P 1 P 11 X-RAY DIFFRACTION 1 ( CHAIN P AND RESID 1:11 ) OR ( CHAIN T AND RESID 1:14 ) T 1 T 14 X-RAY DIFFRACTION 1 ( CHAIN P AND RESID 1:11 ) OR ( CHAIN T AND RESID 1:14 ) A 1 A 168 X-RAY DIFFRACTION 2 ( CHAIN A AND RESID 1:168 ) A 169 A 246 X-RAY DIFFRACTION 3 ( CHAIN A AND RESID 169:246 ) A 247 A 342 X-RAY DIFFRACTION 4 ( CHAIN A AND RESID 247:342 ) author_and_software_defined_assembly PISA 3 trimeric 2610 -33 20260 A ASP 7 A OD1 ASP 7 1_555 A CA 401 D CA CA 1_555 A GLU 106 A OE2 GLU 106 1_555 71.7 A ASP 7 A OD1 ASP 7 1_555 A CA 401 D CA CA 1_555 A HOH 553 E O HOH 1_555 123.4 A GLU 106 A OE2 GLU 106 1_555 A CA 401 D CA CA 1_555 A HOH 553 E O HOH 1_555 66.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 165 A O GLY 165 A N VAL 143 A N VAL 143 A O THR 142 A O THR 142 A N ASP 7 A N ASP 7 A N ILE 4 A N ILE 4 A O LEU 109 A O LEU 109 A O TYR 108 A O TYR 108 A N GLU 100 A N GLU 100 A N VAL 101 A N VAL 101 A O LYS 241 A O LYS 241 A O THR 45 A O THR 45 A N VAL 30 A N VAL 30 A N VAL 29 A N VAL 29 A O ILE 72 A O ILE 72 A N MET 252 A N MET 252 A O ARG 332 A O ARG 332 A O ARG 333 A O ARG 333 A N VAL 290 A N VAL 290 A N ALA 289 A N ALA 289 A O VAL 297 A O VAL 297 1 A HOH 510 E HOH 1 T C5' DT 6 C C5' DT 6 1 Y 1 T C4' DT 6 C C4' DT 6 1 Y 1 T O4' DT 6 C O4' DT 6 1 Y 1 T C3' DT 6 C C3' DT 6 1 Y 1 T O3' DT 6 C O3' DT 6 1 Y 1 T C2' DT 6 C C2' DT 6 1 Y 1 T C1' DT 6 C C1' DT 6 1 Y 1 T N1 DT 6 C N1 DT 6 1 Y 1 T C2 DT 6 C C2 DT 6 1 Y 1 T O2 DT 6 C O2 DT 6 1 Y 1 T N3 DT 6 C N3 DT 6 1 Y 1 T C4 DT 6 C C4 DT 6 1 Y 1 T O4 DT 6 C O4 DT 6 1 Y 1 T C5 DT 6 C C5 DT 6 1 Y 1 T C7 DT 6 C C7 DT 6 1 Y 1 T C6 DT 6 C C6 DT 6 1 Y 1 T P DG 7 C P DG 7 1 Y 1 T OP1 DG 7 C OP1 DG 7 1 Y 1 T OP2 DG 7 C OP2 DG 7 1 Y 1 T O5' DG 7 C O5' DG 7 1 Y 1 T C5' DG 7 C C5' DG 7 1 Y 1 A GLY 35 A GLY 35 1 Y 1 A ARG 36 A ARG 36 1 Y 1 A THR 37 A THR 37 1 Y 1 A LYS 38 A LYS 38 1 Y 1 A THR 39 A THR 39 1 Y 1 A GLU 343 A GLU 343 1 Y 1 A ALA 344 A ALA 344 1 Y 1 A ILE 345 A ILE 345 1 Y 1 A GLY 346 A GLY 346 1 Y 1 A LEU 347 A LEU 347 1 Y 1 A ASP 348 A ASP 348 1 Y 1 A LYS 349 A LYS 349 1 Y 1 A PHE 350 A PHE 350 1 Y 1 A PHE 351 A PHE 351 1 Y 1 A ASP 352 A ASP 352 1 Y 1 A THR 353 A THR 353 1 Y 1 A GLY 354 A GLY 354 1 Y 1 A GLY 355 A GLY 355 1 Y 1 A HIS 356 A HIS 356 1 Y 1 A HIS 357 A HIS 357 1 Y 1 A HIS 358 A HIS 358 1 Y 1 A HIS 359 A HIS 359 1 Y 1 A HIS 360 A HIS 360 1 Y 1 A HIS 361 A HIS 361 1 Y 1 T DC 2 C DC 2 1 Y 1 A A NH2 O ARG HOH 280 536 1.88 1 T T O3' O DC HOH 1 110 1.99 1 A A N O VAL HOH 166 539 2.05 1 A A O O HOH HOH 544 545 2.06 1 T T OP2 O DT HOH 6 107 2.09 1 T T OP1 O DG HOH 8 113 2.13 1 A A O O HOH HOH 517 545 2.15 1 A A O O ILE HOH 342 503 2.17 1 -5.11 0.80 102.40 97.29 P P P C3' C2' C1' DG DG DG 2 2 2 N 1 2.39 0.30 108.30 110.69 P P P O4' C1' N9 DG DG DG 2 2 2 N 1 2.91 0.30 108.30 111.21 T T T O4' C1' N1 DC DC DC 5 5 5 N 1 -7.40 1.00 110.10 102.70 T T T C1' O4' C4' DG DG DG 7 7 7 N 1 7.00 0.30 108.30 115.30 T T T O4' C1' N9 DG DG DG 7 7 7 N 1 P P O3' C3' DG DG 9 9 -0.043 0.006 1.419 1.376 N 1 A A O O HOH HOH 501 508 1.93 1_555 7_554 1 A ARG 77 -108.53 77.54 1 A SER 103 -171.62 -173.17 1 A THR 112 -38.12 -70.37 1 A SER 208 -107.73 54.72 1 A SER 235 -163.42 112.30 1 A LYS 241 -171.38 -175.34 1 A ILE 270 -77.31 35.51 1 A GLU 271 -142.66 -63.16 1 A ASP 278 58.52 -138.98 1 A PRO 304 -68.13 68.95 1 A HIS 305 -176.58 144.29 5.2801 0.0000 -0.0000 5.2801 0.0000 -10.5602 0.2691 0.2117 0.2145 2.215 28.468 1365 27377 4.99 97.41 0.32 Random 1 1.49 MOLECULAR REPLACEMENT 28.18 0.98 1.20 ML FLAT BULK SOLVENT MODEL 56.503 0.331 2.215 28.468 74 3234 1 466 2693 0.008 3254 1.227 4474 18.769 1287 0.075 512 0.005 491 0.3220 0.3062 2.2939 110 2190 83.00 0.3583 0.3075 2.3857 136 2522 97.00 0.3747 0.2907 2.4943 137 2604 99.00 0.3350 0.2776 2.6257 135 2620 99.00 0.3661 0.2700 2.7901 139 2621 99.00 0.3030 0.2442 3.0053 139 2633 100.00 0.3028 0.2133 3.3073 139 2668 100.00 0.2616 0.1959 3.7849 141 2675 100.00 0.2110 0.1685 4.7649 143 2718 100.00 0.2378 0.1906 28.4707 146 2761 97.00 2.215 30 4F50 28140 27408 0.0 0.0 0.051 1 31.9 9.7 97.4 0.353 2.22 2.26 2.2 1092 1 3.8 79.9 data collection CBASS phasing PHASER in PHENIX refinement PHENIX (phenix.refine: 1.7.3_928) data reduction HKL-2000 data scaling HKL-2000 Y-family DNA polymerase chimera Dbh-Dbh-Dpo4 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A TYR 10 A TYR 10 HELX_P A ASN 20 A ASN 20 1 1 11 A PRO 21 A PRO 21 HELX_P A LYS 24 A LYS 24 5 2 4 A ASN 47 A ASN 47 HELX_P A LEU 53 A LEU 53 1 3 7 A PRO 60 A PRO 60 HELX_P A GLN 66 A GLN 66 1 4 7 A ARG 77 A ARG 77 HELX_P A LYS 94 A LYS 94 1 5 18 A ASN 118 A ASN 118 HELX_P A LYS 138 A LYS 138 1 6 21 A ASN 148 A ASN 148 HELX_P A SER 159 A SER 159 1 7 12 A GLU 171 A GLU 171 HELX_P A GLU 178 A GLU 178 1 8 8 A ASP 180 A ASP 180 HELX_P A ILE 184 A ILE 184 5 9 5 A GLY 188 A GLY 188 HELX_P A GLU 197 A GLU 197 1 10 10 A LYS 202 A LYS 202 HELX_P A LYS 209 A LYS 209 5 11 8 A ASN 210 A ASN 210 HELX_P A GLY 219 A GLY 219 1 12 10 A GLY 219 A GLY 219 HELX_P A GLN 231 A GLN 231 1 13 13 A ASN 258 A ASN 258 HELX_P A SER 273 A SER 273 1 14 16 A SER 273 A SER 273 HELX_P A ASP 278 A ASP 278 1 15 6 A SER 308 A SER 308 HELX_P A GLU 325 A GLU 325 1 16 18 metalc 3.102 A ASP 7 A OD1 ASP 7 1_555 A CA 401 D CA CA 1_555 metalc 3.075 A GLU 106 A OE2 GLU 106 1_555 A CA 401 D CA CA 1_555 metalc 2.897 A CA 401 D CA CA 1_555 A HOH 553 E O HOH 1_555 hydrog WATSON-CRICK P DG 1 B N1 DG 1 1_555 T DC 14 C N3 DC 14 1_555 hydrog WATSON-CRICK P DG 1 B N2 DG 1 1_555 T DC 14 C O2 DC 14 1_555 hydrog WATSON-CRICK P DG 1 B O6 DG 1 1_555 T DC 14 C N4 DC 14 1_555 hydrog WATSON-CRICK P DG 2 B N1 DG 2 1_555 T DC 13 C N3 DC 13 1_555 hydrog WATSON-CRICK P DG 2 B N2 DG 2 1_555 T DC 13 C O2 DC 13 1_555 hydrog WATSON-CRICK P DG 2 B O6 DG 2 1_555 T DC 13 C N4 DC 13 1_555 hydrog WATSON-CRICK P DG 3 B N1 DG 3 1_555 T DC 12 C N3 DC 12 1_555 hydrog WATSON-CRICK P DG 3 B N2 DG 3 1_555 T DC 12 C O2 DC 12 1_555 hydrog WATSON-CRICK P DG 3 B O6 DG 3 1_555 T DC 12 C N4 DC 12 1_555 hydrog WATSON-CRICK P DA 4 B N1 DA 4 1_555 T DT 11 C N3 DT 11 1_555 hydrog WATSON-CRICK P DA 4 B N6 DA 4 1_555 T DT 11 C O4 DT 11 1_555 hydrog WATSON-CRICK P DA 5 B N1 DA 5 1_555 T DT 10 C N3 DT 10 1_555 hydrog WATSON-CRICK P DA 5 B N6 DA 5 1_555 T DT 10 C O4 DT 10 1_555 hydrog WATSON-CRICK P DG 6 B N1 DG 6 1_555 T DC 9 C N3 DC 9 1_555 hydrog WATSON-CRICK P DG 6 B N2 DG 6 1_555 T DC 9 C O2 DC 9 1_555 hydrog WATSON-CRICK P DG 6 B O6 DG 6 1_555 T DC 9 C N4 DC 9 1_555 hydrog WATSON-CRICK P DC 7 B N3 DC 7 1_555 T DG 8 C N1 DG 8 1_555 hydrog WATSON-CRICK P DC 7 B N4 DC 7 1_555 T DG 8 C O6 DG 8 1_555 hydrog WATSON-CRICK P DC 7 B O2 DC 7 1_555 T DG 8 C N2 DG 8 1_555 hydrog WATSON-CRICK P DC 8 B N3 DC 8 1_555 T DG 7 C N1 DG 7 1_555 hydrog WATSON-CRICK P DC 8 B N4 DC 8 1_555 T DG 7 C O6 DG 7 1_555 hydrog WATSON-CRICK P DC 8 B O2 DC 8 1_555 T DG 7 C N2 DG 7 1_555 hydrog WATSON-CRICK P DG 9 B N1 DG 9 1_555 T DC 5 C N3 DC 5 1_555 hydrog WATSON-CRICK P DG 9 B N2 DG 9 1_555 T DC 5 C O2 DC 5 1_555 hydrog WATSON-CRICK P DG 9 B O6 DG 9 1_555 T DC 5 C N4 DC 5 1_555 hydrog WATSON-CRICK P DG 10 B N1 DG 10 1_555 T DC 4 C N3 DC 4 1_555 hydrog WATSON-CRICK P DG 10 B N2 DG 10 1_555 T DC 4 C O2 DC 4 1_555 hydrog WATSON-CRICK P DG 10 B O6 DG 10 1_555 T DC 4 C N4 DC 4 1_555 hydrog WATSON-CRICK P DC 11 B N3 DC 11 1_555 T DG 3 C N1 DG 3 1_555 hydrog WATSON-CRICK P DC 11 B N4 DC 11 1_555 T DG 3 C O6 DG 3 1_555 hydrog WATSON-CRICK P DC 11 B O2 DC 11 1_555 T DG 3 C N2 DG 3 1_555 TRANSFERASE/DNA Y-family polymerase, TRANSFERASE-DNA complex A LYS 160 A LYS 160 1 A PRO 161 A PRO 161 -8.56 DPO4_SULAC UNP 1 1 Q4JB80 MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPH DPO4_SULSO UNP 1 246 Q97W02 GRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEE DERKIRRIGVRFSKFIEAIGLDKFFDT 4F50 PDB 2 1 4F50 GGGAAGCCGGC 4F50 PDB 3 1 4F50 CCGCCTGGCTTCCC 1 246 4F50 1 246 Q4JB80 A 1 1 246 246 352 4F50 247 353 Q97W02 A 2 247 353 1 11 4F50 1 11 4F50 P 3 1 11 1 14 4F50 1 14 4F50 T 4 1 14 2 expression tag GLY 354 4F50 A Q97W02 UNP 354 2 expression tag GLY 355 4F50 A Q97W02 UNP 355 2 expression tag HIS 356 4F50 A Q97W02 UNP 356 2 expression tag HIS 357 4F50 A Q97W02 UNP 357 2 expression tag HIS 358 4F50 A Q97W02 UNP 358 2 expression tag HIS 359 4F50 A Q97W02 UNP 359 2 expression tag HIS 360 4F50 A Q97W02 UNP 360 2 expression tag HIS 361 4F50 A Q97W02 UNP 361 6 3 4 parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A LEU 164 A LEU 164 A VAL 166 A VAL 166 A VAL 141 A VAL 141 A ALA 146 A ALA 146 A VAL 3 A VAL 3 A PHE 8 A PHE 8 A GLU 106 A GLU 106 A ASP 110 A ASP 110 A LYS 98 A LYS 98 A SER 103 A SER 103 A LYS 241 A LYS 241 A SER 242 A SER 242 A ALA 42 A ALA 42 A ALA 46 A ALA 46 A LEU 28 A LEU 28 A VAL 32 A VAL 32 A ILE 72 A ILE 72 A PRO 75 A PRO 75 A ILE 249 A ILE 249 A SER 256 A SER 256 A ILE 331 A ILE 331 A SER 339 A SER 339 A ALA 284 A ALA 284 A THR 291 A THR 291 A ILE 296 A ILE 296 A THR 302 A THR 302 BINDING SITE FOR RESIDUE CA A 401 A CA 401 Software 3 A ASP 7 A ASP 7 3 1_555 A GLU 106 A GLU 106 3 1_555 A HOH 553 E HOH 3 1_555 92 P 41 21 2