0.014930
0.008620
0.000000
0.000000
0.017240
0.000000
0.000000
0.000000
0.021386
0.000000
0.000000
0.000000
Kaneko, T.
Huang, H.
Cao, X.
Li, C.
Voss, C.
Sidhu, S.S.
Li, S.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
66.980
66.980
46.760
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
O
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
Sci.Signal.
1937-9145
5
ra68
ra68
10.1126/scisignal.2003021
23012655
Superbinder SH2 Domains Act as Antagonists of Cell Signaling.
2012
10.2210/pdb4f5a/pdb
pdb_00004f5a
114
1
IMAGE PLATE
2011-04-27
MAR scanner 345 mm plate
Graded multilayer (osmic)
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
12699.316
Proto-oncogene tyrosine-protein kinase Src
SH2 domain
T183V/C188A/K206L
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
63
nat
water
Proto-oncogene c-Src, pp60c-src, p60-Src
no
no
GAMDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYLIRKLDSGGFYITSR
TQFNSLQQLVAYYSKHADGLCHRLTTVCPTSK
GAMDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYLIRKLDSGGFYITSR
TQFNSLQQLVAYYSKHADGLCHRLTTVCPTSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SRC, SRC1
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
1
2.38
48.41
VAPOR DIFFUSION, SITTING DROP
7.6
0.1 M Tris-HCl, 18% PEG6000, 0.2 M lithium chloride, pH 7.6, vapor diffusion, sitting drop, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2012-10-03
1
1
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Same protein without ligand
RCSB
Y
RCSB
2012-05-12
REL
REL
PO4
PHOSPHATE ION
HOH
water
PO4
1
2
PO4
PO4
301
A
HOH
1
3
HOH
HOH
401
A
HOH
2
3
HOH
HOH
402
A
HOH
3
3
HOH
HOH
403
A
HOH
4
3
HOH
HOH
404
A
HOH
5
3
HOH
HOH
405
A
HOH
6
3
HOH
HOH
406
A
HOH
7
3
HOH
HOH
407
A
HOH
8
3
HOH
HOH
408
A
HOH
9
3
HOH
HOH
409
A
HOH
10
3
HOH
HOH
410
A
HOH
11
3
HOH
HOH
411
A
HOH
12
3
HOH
HOH
412
A
HOH
13
3
HOH
HOH
413
A
HOH
14
3
HOH
HOH
414
A
HOH
15
3
HOH
HOH
415
A
HOH
16
3
HOH
HOH
416
A
HOH
17
3
HOH
HOH
417
A
HOH
18
3
HOH
HOH
418
A
HOH
19
3
HOH
HOH
419
A
HOH
20
3
HOH
HOH
420
A
HOH
21
3
HOH
HOH
421
A
HOH
22
3
HOH
HOH
422
A
HOH
23
3
HOH
HOH
423
A
HOH
24
3
HOH
HOH
424
A
HOH
25
3
HOH
HOH
425
A
HOH
26
3
HOH
HOH
426
A
HOH
27
3
HOH
HOH
427
A
HOH
28
3
HOH
HOH
428
A
HOH
29
3
HOH
HOH
429
A
HOH
30
3
HOH
HOH
430
A
HOH
31
3
HOH
HOH
431
A
HOH
32
3
HOH
HOH
432
A
HOH
33
3
HOH
HOH
433
A
HOH
34
3
HOH
HOH
434
A
HOH
35
3
HOH
HOH
435
A
HOH
36
3
HOH
HOH
436
A
HOH
37
3
HOH
HOH
437
A
HOH
38
3
HOH
HOH
438
A
HOH
39
3
HOH
HOH
439
A
HOH
40
3
HOH
HOH
440
A
HOH
41
3
HOH
HOH
441
A
HOH
42
3
HOH
HOH
442
A
HOH
43
3
HOH
HOH
443
A
HOH
44
3
HOH
HOH
444
A
HOH
45
3
HOH
HOH
445
A
HOH
46
3
HOH
HOH
446
A
HOH
47
3
HOH
HOH
447
A
HOH
48
3
HOH
HOH
448
A
HOH
49
3
HOH
HOH
449
A
HOH
50
3
HOH
HOH
450
A
HOH
51
3
HOH
HOH
451
A
HOH
52
3
HOH
HOH
452
A
HOH
53
3
HOH
HOH
453
A
HOH
54
3
HOH
HOH
454
A
HOH
55
3
HOH
HOH
455
A
HOH
56
3
HOH
HOH
456
A
HOH
57
3
HOH
HOH
457
A
HOH
58
3
HOH
HOH
458
A
HOH
59
3
HOH
HOH
459
A
HOH
60
3
HOH
HOH
460
A
HOH
61
3
HOH
HOH
461
A
HOH
62
3
HOH
HOH
462
A
HOH
63
3
HOH
HOH
463
A
2.070
2.070
27.230
27.230
n
1
141
A
n
2
142
A
n
3
143
A
ASP
144
n
4
ASP
144
A
SER
145
n
5
SER
145
A
ILE
146
n
6
ILE
146
A
GLN
147
n
7
GLN
147
A
ALA
148
n
8
ALA
148
A
GLU
149
n
9
GLU
149
A
GLU
150
n
10
GLU
150
A
TRP
151
n
11
TRP
151
A
TYR
152
n
12
TYR
152
A
PHE
153
n
13
PHE
153
A
GLY
154
n
14
GLY
154
A
LYS
155
n
15
LYS
155
A
ILE
156
n
16
ILE
156
A
THR
157
n
17
THR
157
A
ARG
158
n
18
ARG
158
A
ARG
159
n
19
ARG
159
A
GLU
160
n
20
GLU
160
A
SER
161
n
21
SER
161
A
GLU
162
n
22
GLU
162
A
ARG
163
n
23
ARG
163
A
LEU
164
n
24
LEU
164
A
LEU
165
n
25
LEU
165
A
LEU
166
n
26
LEU
166
A
ASN
167
n
27
ASN
167
A
ALA
168
n
28
ALA
168
A
GLU
169
n
29
GLU
169
A
ASN
170
n
30
ASN
170
A
PRO
171
n
31
PRO
171
A
ARG
172
n
32
ARG
172
A
GLY
173
n
33
GLY
173
A
THR
174
n
34
THR
174
A
PHE
175
n
35
PHE
175
A
LEU
176
n
36
LEU
176
A
VAL
177
n
37
VAL
177
A
ARG
178
n
38
ARG
178
A
GLU
179
n
39
GLU
179
A
SER
180
n
40
SER
180
A
GLU
181
n
41
GLU
181
A
THR
182
n
42
THR
182
A
VAL
183
n
43
VAL
183
A
LYS
184
n
44
LYS
184
A
GLY
185
n
45
GLY
185
A
ALA
186
n
46
ALA
186
A
TYR
187
n
47
TYR
187
A
ALA
188
n
48
ALA
188
A
LEU
189
n
49
LEU
189
A
SER
190
n
50
SER
190
A
VAL
191
n
51
VAL
191
A
SER
192
n
52
SER
192
A
ASP
193
n
53
ASP
193
A
PHE
194
n
54
PHE
194
A
ASP
195
n
55
ASP
195
A
ASN
196
n
56
ASN
196
A
ALA
197
n
57
ALA
197
A
LYS
198
n
58
LYS
198
A
GLY
199
n
59
GLY
199
A
LEU
200
n
60
LEU
200
A
ASN
201
n
61
ASN
201
A
VAL
202
n
62
VAL
202
A
LYS
203
n
63
LYS
203
A
HIS
204
n
64
HIS
204
A
TYR
205
n
65
TYR
205
A
LEU
206
n
66
LEU
206
A
ILE
207
n
67
ILE
207
A
ARG
208
n
68
ARG
208
A
LYS
209
n
69
LYS
209
A
LEU
210
n
70
LEU
210
A
ASP
211
n
71
ASP
211
A
SER
212
n
72
SER
212
A
GLY
213
n
73
GLY
213
A
GLY
214
n
74
GLY
214
A
PHE
215
n
75
PHE
215
A
TYR
216
n
76
TYR
216
A
ILE
217
n
77
ILE
217
A
THR
218
n
78
THR
218
A
SER
219
n
79
SER
219
A
ARG
220
n
80
ARG
220
A
THR
221
n
81
THR
221
A
GLN
222
n
82
GLN
222
A
PHE
223
n
83
PHE
223
A
ASN
224
n
84
ASN
224
A
SER
225
n
85
SER
225
A
LEU
226
n
86
LEU
226
A
GLN
227
n
87
GLN
227
A
GLN
228
n
88
GLN
228
A
LEU
229
n
89
LEU
229
A
VAL
230
n
90
VAL
230
A
ALA
231
n
91
ALA
231
A
TYR
232
n
92
TYR
232
A
TYR
233
n
93
TYR
233
A
SER
234
n
94
SER
234
A
LYS
235
n
95
LYS
235
A
HIS
236
n
96
HIS
236
A
ALA
237
n
97
ALA
237
A
ASP
238
n
98
ASP
238
A
GLY
239
n
99
GLY
239
A
LEU
240
n
100
LEU
240
A
CYS
241
n
101
CYS
241
A
HIS
242
n
102
HIS
242
A
ARG
243
n
103
ARG
243
A
LEU
244
n
104
LEU
244
A
THR
245
n
105
THR
245
A
THR
246
n
106
THR
246
A
VAL
247
n
107
VAL
247
A
CYS
248
n
108
CYS
248
A
PRO
249
n
109
PRO
249
A
THR
250
n
110
THR
250
A
SER
251
n
111
SER
251
A
n
112
252
A
2.4369
-0.2446
0.4802
5.3970
-0.3940
4.7928
-0.0918
-0.1440
-0.0803
0.0639
0.1727
0.0579
-0.2539
-0.3570
-0.0809
0.0622
0.0258
0.0165
0.0887
0.0213
0.0274
refined
-15.9620
19.4490
0.6770
X-RAY DIFFRACTION
A
144
A
251
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
153
A
N
PHE
13
A
O
VAL
177
A
O
VAL
37
A
N
THR
174
A
N
THR
34
A
O
SER
192
A
O
SER
52
A
N
VAL
191
A
N
VAL
51
A
O
LYS
203
A
O
LYS
63
A
N
ARG
208
A
N
ARG
68
A
O
TYR
216
A
O
TYR
76
A
N
PHE
153
A
N
PHE
13
A
O
VAL
177
A
O
VAL
37
A
N
PHE
175
A
N
PHE
35
A
O
THR
246
A
O
THR
106
1
A
GLY
141
A
GLY
1
1
Y
1
A
ALA
142
A
ALA
2
1
Y
1
A
MET
143
A
MET
3
1
Y
1
A
LYS
252
A
LYS
112
1
Y
1
A
ASP
238
35.63
53.85
75.180
34.1007
11.660
0.8100
0.4000
0.0000
0.8100
0.0000
-1.2100
0.9510
0.9430
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2451
0.2052
0.2072
0.2072
1.8000
58.006
530
11144
11144
4.8000
99.5600
0.2685
0.2181
1.000
1.000
0.8157
7.5060
0.1050
0.1387
0.1333
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1390
0.1330
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
MASK
1.8000
58.006
63
935
5
0
867
0.013
0.021
888
1.482
1.953
1199
6.204
5.000
107
26.401
22.955
44
14.148
15.000
153
17.415
15.000
8
0.102
0.200
131
0.006
0.020
671
0.809
1.500
534
1.423
2.000
857
2.478
3.000
354
4.005
4.500
342
0.2970
0.2810
1.8470
45
790
835
20
100.0000
1.80
58.006
4F5A
11161
11161
0
0
0.038
1
27.500
5.900
99.600
0.267
1.800
1.900
2.900
9473
1641
0.267
1
5.800
100.000
0.151
1.900
2.010
5.100
8919
1531
0.151
1
5.800
100.000
0.091
2.010
2.150
8.000
8576
1459
0.091
1
5.900
100.000
0.066
2.150
2.320
10.700
7914
1335
0.066
1
5.900
100.000
0.049
2.320
2.550
14.000
7418
1239
0.049
1
6.000
100.000
0.037
2.550
2.850
16.500
6723
1116
0.037
1
6.000
100.000
0.031
2.850
3.290
18.200
6109
1006
0.031
1
6.100
100.000
0.031
3.290
4.030
18.000
5056
839
0.031
1
6.000
99.900
0.032
4.030
5.690
18.400
3743
657
0.032
1
5.700
98.700
0.034
5.690
27.227
16.900
1714
338
0.034
1
5.100
89.100
data reduction
Andrew G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2010/01/06
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.16
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
MAR345dtb
Triple mutant Src SH2 domain bound to phosphate ion
1
N
N
2
N
N
3
N
N
biological unit is the same as asym.
A
SER
145
A
SER
5
HELX_P
A
GLU
149
A
GLU
9
5
1
5
A
THR
157
A
THR
17
HELX_P
A
LEU
166
A
LEU
26
1
2
10
A
SER
225
A
SER
85
HELX_P
A
HIS
236
A
HIS
96
1
3
12
PROTEIN BINDING
SH2 domain, Cell signalling, phosphotyrosine, PROTEIN BINDING
SRC_HUMAN
UNP
1
144
P12931
DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQF
NSLQQLVAYYSKHADGLCHRLTTVCPTSK
144
252
4F5A
144
252
P12931
A
1
4
112
1
expression tag
GLY
141
4F5A
A
P12931
UNP
1
1
expression tag
ALA
142
4F5A
A
P12931
UNP
2
1
expression tag
MET
143
4F5A
A
P12931
UNP
3
1
THR
engineered mutation
VAL
183
4F5A
A
P12931
UNP
183
43
1
CYS
engineered mutation
ALA
188
4F5A
A
P12931
UNP
188
48
1
LYS
engineered mutation
LEU
206
4F5A
A
P12931
UNP
206
66
5
3
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
TYR
152
A
TYR
12
A
GLY
154
A
GLY
14
A
THR
174
A
THR
34
A
GLU
179
A
GLU
39
A
TYR
187
A
TYR
47
A
ASP
195
A
ASP
55
A
GLY
199
A
GLY
59
A
LYS
209
A
LYS
69
A
PHE
215
A
PHE
75
A
TYR
216
A
TYR
76
A
TYR
152
A
TYR
12
A
GLY
154
A
GLY
14
A
THR
174
A
THR
34
A
GLU
179
A
GLU
39
A
THR
246
A
THR
106
A
VAL
247
A
VAL
107
BINDING SITE FOR RESIDUE PO4 A 301
A
PO4
301
Software
6
A
ARG
158
A
ARG
18
6
1_555
A
ARG
178
A
ARG
38
6
1_555
A
SER
180
A
SER
40
6
1_555
A
GLU
181
A
GLU
41
6
1_555
A
THR
182
A
THR
42
6
1_555
A
HOH
445
C
HOH
6
1_555
169
P 61