0.014793
0.008541
0.000000
0.000000
0.017081
0.000000
0.000000
0.000000
0.021367
0.000000
0.000000
0.000000
Kaneko, T.
Huang, H.
Cao, X.
Li, C.
Voss, C.
Sidhu, S.S.
Li, S.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
67.600
67.600
46.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
N
302
N
O
N
303
N
P
N
304
N
O
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
R
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
N
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
US
Sci.Signal.
1937-9145
5
ra68
ra68
10.1126/scisignal.2003021
23012655
Superbinder SH2 Domains Act as Antagonists of Cell Signaling.
2012
10.2210/pdb4f5b/pdb
pdb_00004f5b
114
1
IMAGE PLATE
2011-10-26
MAR scanner 345 mm plate
Graded multilayer (osmic)
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
12699.316
Proto-oncogene tyrosine-protein kinase Src
SH2 domain
T183V/C188A/K206L
1
man
polymer
phosphorylated tyrosine
261.168
O-PHOSPHOTYROSINE
1
syn
non-polymer
18.015
water
123
nat
water
Proto-oncogene c-Src, pp60c-src, p60-Src
no
no
GAMDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYLIRKLDSGGFYITSR
TQFNSLQQLVAYYSKHADGLCHRLTTVCPTSK
GAMDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYLIRKLDSGGFYITSR
TQFNSLQQLVAYYSKHADGLCHRLTTVCPTSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SRC, SRC1
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
1
2.43
49.40
VAPOR DIFFUSION, SITTING DROP
7.6
0.1 M Tris-HCl, 18% PEG6000, 0.2 M lithium chloride, pH 7.6, vapor diffusion, sitting drop, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
entity
pdbx_entity_src_syn
repository
Initial release
Data collection
Database references
Derived calculations
Source and taxonomy
Structure summary
1
0
2012-10-03
1
1
2024-02-28
1
2
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_entity.details
Same protein without ligand
Same protein bound to phosphate ion
RCSB
Y
RCSB
2012-05-12
REL
REL
PTR
O-PHOSPHOTYROSINE
HOH
water
PTR
1
2
PTR
PTR
301
A
HOH
1
3
HOH
HOH
401
A
HOH
2
3
HOH
HOH
402
A
HOH
3
3
HOH
HOH
403
A
HOH
4
3
HOH
HOH
404
A
HOH
5
3
HOH
HOH
405
A
HOH
6
3
HOH
HOH
406
A
HOH
7
3
HOH
HOH
407
A
HOH
8
3
HOH
HOH
408
A
HOH
9
3
HOH
HOH
409
A
HOH
10
3
HOH
HOH
410
A
HOH
11
3
HOH
HOH
411
A
HOH
12
3
HOH
HOH
412
A
HOH
13
3
HOH
HOH
413
A
HOH
14
3
HOH
HOH
414
A
HOH
15
3
HOH
HOH
415
A
HOH
16
3
HOH
HOH
416
A
HOH
17
3
HOH
HOH
417
A
HOH
18
3
HOH
HOH
418
A
HOH
19
3
HOH
HOH
419
A
HOH
20
3
HOH
HOH
420
A
HOH
21
3
HOH
HOH
421
A
HOH
22
3
HOH
HOH
422
A
HOH
23
3
HOH
HOH
423
A
HOH
24
3
HOH
HOH
424
A
HOH
25
3
HOH
HOH
425
A
HOH
26
3
HOH
HOH
426
A
HOH
27
3
HOH
HOH
427
A
HOH
28
3
HOH
HOH
428
A
HOH
29
3
HOH
HOH
429
A
HOH
30
3
HOH
HOH
430
A
HOH
31
3
HOH
HOH
431
A
HOH
32
3
HOH
HOH
432
A
HOH
33
3
HOH
HOH
433
A
HOH
34
3
HOH
HOH
434
A
HOH
35
3
HOH
HOH
435
A
HOH
36
3
HOH
HOH
436
A
HOH
37
3
HOH
HOH
437
A
HOH
38
3
HOH
HOH
438
A
HOH
39
3
HOH
HOH
439
A
HOH
40
3
HOH
HOH
440
A
HOH
41
3
HOH
HOH
441
A
HOH
42
3
HOH
HOH
442
A
HOH
43
3
HOH
HOH
443
A
HOH
44
3
HOH
HOH
444
A
HOH
45
3
HOH
HOH
445
A
HOH
46
3
HOH
HOH
446
A
HOH
47
3
HOH
HOH
447
A
HOH
48
3
HOH
HOH
448
A
HOH
49
3
HOH
HOH
449
A
HOH
50
3
HOH
HOH
450
A
HOH
51
3
HOH
HOH
451
A
HOH
52
3
HOH
HOH
452
A
HOH
53
3
HOH
HOH
453
A
HOH
54
3
HOH
HOH
454
A
HOH
55
3
HOH
HOH
455
A
HOH
56
3
HOH
HOH
456
A
HOH
57
3
HOH
HOH
457
A
HOH
58
3
HOH
HOH
458
A
HOH
59
3
HOH
HOH
459
A
HOH
60
3
HOH
HOH
460
A
HOH
61
3
HOH
HOH
461
A
HOH
62
3
HOH
HOH
462
A
HOH
63
3
HOH
HOH
463
A
HOH
64
3
HOH
HOH
464
A
HOH
65
3
HOH
HOH
465
A
HOH
66
3
HOH
HOH
466
A
HOH
67
3
HOH
HOH
467
A
HOH
68
3
HOH
HOH
468
A
HOH
69
3
HOH
HOH
469
A
HOH
70
3
HOH
HOH
470
A
HOH
71
3
HOH
HOH
471
A
HOH
72
3
HOH
HOH
472
A
HOH
73
3
HOH
HOH
473
A
HOH
74
3
HOH
HOH
474
A
HOH
75
3
HOH
HOH
475
A
HOH
76
3
HOH
HOH
476
A
HOH
77
3
HOH
HOH
477
A
HOH
78
3
HOH
HOH
478
A
HOH
79
3
HOH
HOH
479
A
HOH
80
3
HOH
HOH
480
A
HOH
81
3
HOH
HOH
481
A
HOH
82
3
HOH
HOH
482
A
HOH
83
3
HOH
HOH
483
A
HOH
84
3
HOH
HOH
484
A
HOH
85
3
HOH
HOH
485
A
HOH
86
3
HOH
HOH
486
A
HOH
87
3
HOH
HOH
487
A
HOH
88
3
HOH
HOH
488
A
HOH
89
3
HOH
HOH
489
A
HOH
90
3
HOH
HOH
490
A
HOH
91
3
HOH
HOH
491
A
HOH
92
3
HOH
HOH
492
A
HOH
93
3
HOH
HOH
493
A
HOH
94
3
HOH
HOH
494
A
HOH
95
3
HOH
HOH
495
A
HOH
96
3
HOH
HOH
496
A
HOH
97
3
HOH
HOH
497
A
HOH
98
3
HOH
HOH
498
A
HOH
99
3
HOH
HOH
499
A
HOH
100
3
HOH
HOH
500
A
HOH
101
3
HOH
HOH
501
A
HOH
102
3
HOH
HOH
502
A
HOH
103
3
HOH
HOH
503
A
HOH
104
3
HOH
HOH
504
A
HOH
105
3
HOH
HOH
505
A
HOH
106
3
HOH
HOH
506
A
HOH
107
3
HOH
HOH
507
A
HOH
108
3
HOH
HOH
508
A
HOH
109
3
HOH
HOH
509
A
HOH
110
3
HOH
HOH
510
A
HOH
111
3
HOH
HOH
511
A
HOH
112
3
HOH
HOH
512
A
HOH
113
3
HOH
HOH
513
A
HOH
114
3
HOH
HOH
514
A
HOH
115
3
HOH
HOH
515
A
HOH
116
3
HOH
HOH
516
A
HOH
117
3
HOH
HOH
517
A
HOH
118
3
HOH
HOH
518
A
HOH
119
3
HOH
HOH
519
A
HOH
120
3
HOH
HOH
520
A
HOH
121
3
HOH
HOH
521
A
HOH
122
3
HOH
HOH
522
A
HOH
123
3
HOH
HOH
523
A
1.870
1.870
22.090
22.090
n
1
141
A
n
2
142
A
n
3
143
A
ASP
144
n
4
ASP
144
A
SER
145
n
5
SER
145
A
ILE
146
n
6
ILE
146
A
GLN
147
n
7
GLN
147
A
ALA
148
n
8
ALA
148
A
GLU
149
n
9
GLU
149
A
GLU
150
n
10
GLU
150
A
TRP
151
n
11
TRP
151
A
TYR
152
n
12
TYR
152
A
PHE
153
n
13
PHE
153
A
GLY
154
n
14
GLY
154
A
LYS
155
n
15
LYS
155
A
ILE
156
n
16
ILE
156
A
THR
157
n
17
THR
157
A
ARG
158
n
18
ARG
158
A
ARG
159
n
19
ARG
159
A
GLU
160
n
20
GLU
160
A
SER
161
n
21
SER
161
A
GLU
162
n
22
GLU
162
A
ARG
163
n
23
ARG
163
A
LEU
164
n
24
LEU
164
A
LEU
165
n
25
LEU
165
A
LEU
166
n
26
LEU
166
A
ASN
167
n
27
ASN
167
A
ALA
168
n
28
ALA
168
A
GLU
169
n
29
GLU
169
A
ASN
170
n
30
ASN
170
A
PRO
171
n
31
PRO
171
A
ARG
172
n
32
ARG
172
A
GLY
173
n
33
GLY
173
A
THR
174
n
34
THR
174
A
PHE
175
n
35
PHE
175
A
LEU
176
n
36
LEU
176
A
VAL
177
n
37
VAL
177
A
ARG
178
n
38
ARG
178
A
GLU
179
n
39
GLU
179
A
SER
180
n
40
SER
180
A
GLU
181
n
41
GLU
181
A
THR
182
n
42
THR
182
A
VAL
183
n
43
VAL
183
A
LYS
184
n
44
LYS
184
A
GLY
185
n
45
GLY
185
A
ALA
186
n
46
ALA
186
A
TYR
187
n
47
TYR
187
A
ALA
188
n
48
ALA
188
A
LEU
189
n
49
LEU
189
A
SER
190
n
50
SER
190
A
VAL
191
n
51
VAL
191
A
SER
192
n
52
SER
192
A
ASP
193
n
53
ASP
193
A
PHE
194
n
54
PHE
194
A
ASP
195
n
55
ASP
195
A
ASN
196
n
56
ASN
196
A
ALA
197
n
57
ALA
197
A
LYS
198
n
58
LYS
198
A
GLY
199
n
59
GLY
199
A
LEU
200
n
60
LEU
200
A
ASN
201
n
61
ASN
201
A
VAL
202
n
62
VAL
202
A
LYS
203
n
63
LYS
203
A
HIS
204
n
64
HIS
204
A
TYR
205
n
65
TYR
205
A
LEU
206
n
66
LEU
206
A
ILE
207
n
67
ILE
207
A
ARG
208
n
68
ARG
208
A
LYS
209
n
69
LYS
209
A
LEU
210
n
70
LEU
210
A
ASP
211
n
71
ASP
211
A
SER
212
n
72
SER
212
A
GLY
213
n
73
GLY
213
A
GLY
214
n
74
GLY
214
A
PHE
215
n
75
PHE
215
A
TYR
216
n
76
TYR
216
A
ILE
217
n
77
ILE
217
A
THR
218
n
78
THR
218
A
SER
219
n
79
SER
219
A
ARG
220
n
80
ARG
220
A
THR
221
n
81
THR
221
A
GLN
222
n
82
GLN
222
A
PHE
223
n
83
PHE
223
A
ASN
224
n
84
ASN
224
A
SER
225
n
85
SER
225
A
LEU
226
n
86
LEU
226
A
GLN
227
n
87
GLN
227
A
GLN
228
n
88
GLN
228
A
LEU
229
n
89
LEU
229
A
VAL
230
n
90
VAL
230
A
ALA
231
n
91
ALA
231
A
TYR
232
n
92
TYR
232
A
TYR
233
n
93
TYR
233
A
SER
234
n
94
SER
234
A
LYS
235
n
95
LYS
235
A
HIS
236
n
96
HIS
236
A
ALA
237
n
97
ALA
237
A
ASP
238
n
98
ASP
238
A
GLY
239
n
99
GLY
239
A
LEU
240
n
100
LEU
240
A
CYS
241
n
101
CYS
241
A
HIS
242
n
102
HIS
242
A
ARG
243
n
103
ARG
243
A
LEU
244
n
104
LEU
244
A
THR
245
n
105
THR
245
A
THR
246
n
106
THR
246
A
VAL
247
n
107
VAL
247
A
CYS
248
n
108
CYS
248
A
PRO
249
n
109
PRO
249
A
THR
250
n
110
THR
250
A
SER
251
n
111
SER
251
A
n
112
252
A
2.0918
-1.2259
0.0742
1.4280
0.2568
1.3051
0.0347
0.0102
-0.0437
-0.0841
-0.0230
0.0030
-0.1222
-0.0054
-0.0117
0.0960
0.0059
0.0117
0.1006
0.0086
0.1439
refined
-8.9460
23.5590
-0.1580
X-RAY DIFFRACTION
A
1
A
1000
X-RAY DIFFRACTION
1
A
1
A
1000
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
223
A
O
PHE
83
A
N
PHE
215
A
N
PHE
75
A
O
TYR
216
A
O
TYR
76
A
N
ARG
208
A
N
ARG
68
A
O
ILE
207
A
O
ILE
67
A
N
TYR
187
A
N
TYR
47
A
O
SER
192
A
O
SER
52
A
N
THR
174
A
N
THR
34
A
N
PHE
175
A
N
PHE
35
A
O
THR
246
A
O
THR
106
1
A
GLY
141
A
GLY
1
1
Y
1
A
ALA
142
A
ALA
2
1
Y
1
A
MET
143
A
MET
3
1
Y
1
A
LYS
252
A
LYS
112
1
Y
1
A
ASP
238
36.78
52.13
51.560
24.6385
11.000
0.4700
0.2300
0.0000
0.4700
0.0000
-0.7000
0.9570
0.9470
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
0.2303
0.1981
0.1996
0.1996
1.5700
19.5100
724
15437
15437
4.7000
90.1500
0.2377
0.2035
1.000
1.000
0.8507
3.5040
0.0570
0.1005
0.0995
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1000
0.0990
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
MASK
1.5700
19.5100
123
1007
17
0
867
0.012
0.021
901
1.441
1.958
1217
6.536
5.000
107
26.289
22.889
45
11.898
15.000
154
10.776
15.000
8
0.094
0.200
132
0.007
0.020
683
0.833
1.500
539
1.501
2.000
864
2.400
3.000
362
3.832
4.500
353
0.3000
0.2980
1.6110
59
1219
1278
20
100.0000
1.570
19.514
4F5B
15470
15470
0
0
0.045
1
30.200
8.200
90.200
0.266
1.570
1.650
2.900
19932
2498
0.266
1
8.000
100.000
0.171
1.650
1.760
4.400
17246
2125
0.171
1
8.100
90.400
0.108
1.760
1.880
6.800
18360
2237
0.108
1
8.200
100.000
0.086
1.880
2.030
7.100
11424
1429
0.086
1
8.000
70.300
0.050
2.030
2.220
13.000
14365
1707
0.050
1
8.400
89.300
0.044
2.220
2.480
13.800
12433
1490
0.044
1
8.300
86.500
0.035
2.480
2.870
17.500
11810
1372
0.035
1
8.600
90.000
0.035
2.870
3.510
15.000
10617
1227
0.035
1
8.700
95.000
0.040
3.510
4.960
14.900
7024
854
0.040
1
8.200
84.300
0.045
4.960
20.004
13.100
4050
531
0.045
1
7.600
92.300
data reduction
Andrew G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2010/01/06
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.16
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
MAR345dtb
Triple mutant Src SH2 domain bound to phosphotyrosine
1
N
N
2
N
N
3
N
N
biological unit is the same as asym.
A
SER
145
A
SER
5
HELX_P
A
GLU
149
A
GLU
9
5
1
5
A
THR
157
A
THR
17
HELX_P
A
LEU
166
A
LEU
26
1
2
10
A
SER
225
A
SER
85
HELX_P
A
HIS
236
A
HIS
96
1
3
12
PROTEIN BINDING
SH2 domain, Cell signalling, phosphotyrosine, PROTEIN BINDING
SRC_HUMAN
UNP
1
144
P12931
DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQF
NSLQQLVAYYSKHADGLCHRLTTVCPTSK
144
252
4F5B
144
252
P12931
A
1
4
112
1
expression tag
GLY
141
4F5B
A
P12931
UNP
1
1
expression tag
ALA
142
4F5B
A
P12931
UNP
2
1
expression tag
MET
143
4F5B
A
P12931
UNP
3
1
THR
engineered mutation
VAL
183
4F5B
A
P12931
UNP
183
43
1
CYS
engineered mutation
ALA
188
4F5B
A
P12931
UNP
188
48
1
LYS
engineered mutation
LEU
206
4F5B
A
P12931
UNP
206
66
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
GLN
222
A
GLN
82
A
PHE
223
A
PHE
83
A
PHE
215
A
PHE
75
A
TYR
216
A
TYR
76
A
GLY
199
A
GLY
59
A
LYS
209
A
LYS
69
A
TYR
187
A
TYR
47
A
ASP
195
A
ASP
55
A
THR
174
A
THR
34
A
GLU
179
A
GLU
39
A
THR
246
A
THR
106
A
VAL
247
A
VAL
107
BINDING SITE FOR RESIDUE PTR A 301
A
PTR
301
Software
15
A
ARG
158
A
ARG
18
15
1_555
A
ARG
163
A
ARG
23
15
5_554
A
ARG
178
A
ARG
38
15
1_555
A
SER
180
A
SER
40
15
1_555
A
GLU
181
A
GLU
41
15
1_555
A
THR
182
A
THR
42
15
1_555
A
HIS
204
A
HIS
64
15
1_555
A
LEU
206
A
LEU
66
15
1_555
A
THR
250
A
THR
110
15
5_554
A
SER
251
A
SER
111
15
5_554
A
HOH
427
C
HOH
15
5_554
A
HOH
519
C
HOH
15
1_555
A
HOH
521
C
HOH
15
1_555
A
HOH
522
C
HOH
15
1_555
A
HOH
523
C
HOH
15
1_555
169
P 61