0.005933 0.000000 0.000000 -0.000000 0.005933 0.000000 0.000000 -0.000000 0.024082 0.000000 0.000000 0.000000 Wang, J. Zajonc, D.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 168.553 168.553 41.525 C36 H69 N O14 S2 804.061 N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N C N 3 N C N 4 N C N 5 N C N 6 N C N 7 N C N 8 N C N 9 N C N 10 N C N 11 N C N 12 N C N 13 N C N 14 N C N 15 N C N 16 R C N 17 N O N 18 S C N 19 N C N 20 N O N 21 R C N 22 N O N 23 R C N 24 N O N 25 S C N 26 N O N 27 N S N 28 N O N 29 N O N 30 N O N 31 S C N 32 N O N 33 R C N 34 N C N 35 N O N 36 N S N 37 N O N 38 N O N 39 N O N 40 N N N 41 N C N 42 N O N 43 N C N 44 N C N 45 N C N 46 N C N 47 N C N 48 N C N 49 N C N 50 N C N 51 N C N 52 N C N 53 N C N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N N N 144 N C N 145 N N N 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N O N 170 N N N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N O N 187 N O N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 R C N 197 S C N 198 S C N 199 S C N 200 R C N 201 N C N 202 N O N 203 N O N 204 N O N 205 N O N 206 N O N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N N N 221 R C N 222 N C N 223 N O N 224 N C N 225 N S N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N C N 241 N O N 242 N N N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N O N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 N C N 275 N C N 276 N O N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C Y 288 N C Y 289 N N Y 290 N C Y 291 N C Y 292 N N N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N O N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 S C N 312 N C N 313 N C N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 N C N 334 N C N 335 N C N 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N C N 359 N N N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N S N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 R C N 397 R C N 398 R C N 399 S C N 400 R C N 401 N C N 402 N C N 403 N C N 404 N N N 405 N O N 406 N O N 407 N O N 408 N O N 409 N O N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N N N 450 S C N 451 N C N 452 N O N 453 N C N 454 N C N 455 N C N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N N N 467 S C N 468 N C N 469 N O N 470 N C N 471 N O N 472 N O N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N N N 481 S C N 482 N C N 483 N O N 484 R C N 485 N O N 486 N C N 487 N O N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N N N 498 S C N 499 N C N 500 N O N 501 N C Y 502 N C Y 503 N C Y 504 N C Y 505 N N Y 506 N C Y 507 N C Y 508 N C Y 509 N C Y 510 N C N 511 N O N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N N N 525 S C N 526 N C N 527 N O N 528 N C Y 529 N C Y 530 N C Y 531 N C Y 532 N C Y 533 N C Y 534 N C N 535 N O N 536 N O N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N N N 549 S C N 550 N C N 551 N O N 552 N C N 553 N C N 554 N C N 555 N O N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 E doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N doub N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing Y 286 N sing Y 287 N doub Y 288 N doub N 289 N sing Y 290 N sing N 291 N sing Y 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N doub N 429 N sing Y 430 N doub N 431 N sing Y 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N doub N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N doub N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N doub N 489 N sing N 490 N sing N 491 N sing N 492 N sing Y 493 N doub Y 494 N sing Y 495 N sing N 496 N sing Y 497 N doub Y 498 N sing Y 499 N sing N 500 N sing Y 501 N sing Y 502 N doub N 503 N sing Y 504 N doub N 505 N sing Y 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N doub N 517 N sing N 518 N sing N 519 N sing N 520 N sing Y 521 N doub Y 522 N sing Y 523 N sing N 524 N sing Y 525 N doub N 526 N sing Y 527 N doub N 528 N sing Y 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N doub N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing US Plos One 1932-6203 7 e47989 e47989 10.1371/journal.pone.0047989 23110152 Crystal Structures of Bovine CD1d Reveal Altered αGalCer Presentation and a Restricted A' Pocket Unable to Bind Long-Chain Glycolipids. 2012 10.2210/pdb4f7c/pdb pdb_00004f7c 100 1 CCD 2011-11-19 ADSC QUANTUM 315r single crystal, cylindrically bent, Si(220) SINGLE WAVELENGTH M x-ray 1 1.0 1.0 5.0.3 ALS 1.0 SYNCHROTRON ALS BEAMLINE 5.0.3 32460.561 CD1D antigen, d polypeptide UNP residues 129-405 2 man polymer 11653.148 Beta-2-microglobulin UNP residues 21-118 2 man polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 586.542 beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 2 man branched 748.682 beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 804.061 N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide 2 syn non-polymer 18.015 water 29 nat water T cell surface glycoprotein CD1d antigen Lactollin no no SPAPQTPFSFQGLQISSFANRSWTRTDGLAWLGELQPYTWRNESDTIRFLKPWSRGTFSDQQWEQLQHTLLVYRSSFTRD IWEFVEKLHVEYPLEIQIATGCELLPRNISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHW LLHDIWPELVRGVLQTGKSELEKQVKPEAWLSSGPSPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEEPGTRQGDVMPNAD STWYLRVTLDVAAGEVAGLSCQVKHSSLGDQDIILYWHHHHHH SPAPQTPFSFQGLQISSFANRSWTRTDGLAWLGELQPYTWRNESDTIRFLKPWSRGTFSDQQWEQLQHTLLVYRSSFTRD IWEFVEKLHVEYPLEIQIATGCELLPRNISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHW LLHDIWPELVRGVLQTGKSELEKQVKPEAWLSSGPSPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEEPGTRQGDVMPNAD STWYLRVTLDVAAGEVAGLSCQVKHSSLGDQDIILYWHHHHHH A,C polypeptide(L) no no IQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSCR VKHVTLEQPRIVKWDRDL IQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSCR VKHVTLEQPRIVKWDRDL B,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n bovine fall armyworm sample CD1D 9913 Bos taurus 7108 Spodoptera frugiperda SF9 baculovirus pBACpHp10 bovine fall armyworm sample B2M 9913 Bos taurus 7108 Spodoptera frugiperda SF9 baculovirus pBACpHp10 1 3.35 63.24 VAPOR DIFFUSION, SITTING DROP 20% PEG3350, 200 mM sodium formate, VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ncs_dom_lim repository Initial release Carbohydrate remediation repository Remediation Atomic model Data collection Database references Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2012-11-14 2 0 2020-07-29 2 1 2023-09-13 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id A NAG 500 n E NAG 1 A NAG 501 n E NAG 2 A NAG 502 n F NAG 1 A NAG 503 n F NAG 2 A MAN 504 n F BMA 3 C NAG 500 n G NAG 1 C NAG 501 n G NAG 2 C MAN 502 n G BMA 3 C NAG 503 n H NAG 1 C NAG 504 n H NAG 2 C MAN 505 n H BMA 3 C MAN 506 n H BMA 4 DManpb b-D-mannopyranose b-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Structural basis of sulfatide presentation by mouse CD1d RCSB Y RCSB 2012-05-15 REL REL oligosaccharide oligosaccharide oligosaccharide DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 3 PDB-CARE LINUCS DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1 4 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}} 4 PDB-CARE LINUCS DManpb1-3DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 5 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2-2/a4-b1_b4-c1_c3-d1 5 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][b-D-Manp]{}}}}} 5 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 3 O1 HO4 sing C1 O4 NAG NAG 2 1 4 O1 HO4 sing C1 O4 BMA NAG 3 2 4 O1 HO4 sing C1 O4 NAG NAG 2 1 5 O1 HO4 sing C1 O4 BMA NAG 3 2 5 O1 HO4 sing C1 O3 BMA BMA 4 3 5 O1 HO3 sing n n n n n n n n n 0SG N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide HOH water 3L9R PDB ENTRY 3L9R PDB experimental model CIS 1002 6 0SG 0SG 306 A CIS 1002 6 0SG 0SG 308 C HOH 4 7 HOH HOH 401 A HOH 44 7 HOH HOH 402 A HOH 59 7 HOH HOH 403 A HOH 121 7 HOH HOH 404 A HOH 132 7 HOH HOH 405 A HOH 133 7 HOH HOH 406 A HOH 135 7 HOH HOH 407 A HOH 136 7 HOH HOH 408 A HOH 137 7 HOH HOH 409 A HOH 138 7 HOH HOH 410 A HOH 3 7 HOH HOH 101 B HOH 21 7 HOH HOH 102 B HOH 34 7 HOH HOH 103 B HOH 53 7 HOH HOH 104 B HOH 85 7 HOH HOH 105 B HOH 139 7 HOH HOH 106 B HOH 36 7 HOH HOH 401 C HOH 42 7 HOH HOH 402 C HOH 51 7 HOH HOH 403 C HOH 129 7 HOH HOH 404 C HOH 8 7 HOH HOH 101 D HOH 11 7 HOH HOH 102 D HOH 16 7 HOH HOH 103 D HOH 19 7 HOH HOH 104 D HOH 41 7 HOH HOH 105 D HOH 50 7 HOH HOH 106 D HOH 67 7 HOH HOH 107 D HOH 106 7 HOH HOH 108 D HOH 114 7 HOH HOH 109 D n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A PRO 7 n 7 PRO 7 A PHE 8 n 8 PHE 8 A SER 9 n 9 SER 9 A PHE 10 n 10 PHE 10 A GLN 11 n 11 GLN 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A GLN 14 n 14 GLN 14 A ILE 15 n 15 ILE 15 A SER 16 n 16 SER 16 A SER 17 n 17 SER 17 A PHE 18 n 18 PHE 18 A ALA 19 n 19 ALA 19 A ASN 20 n 20 ASN 20 A ARG 21 n 21 ARG 21 A SER 22 n 22 SER 22 A TRP 23 n 23 TRP 23 A THR 24 n 24 THR 24 A ARG 25 n 25 ARG 25 A THR 26 n 26 THR 26 A ASP 27 n 27 ASP 27 A GLY 28 n 28 GLY 28 A LEU 29 n 29 LEU 29 A ALA 30 n 30 ALA 30 A TRP 31 n 31 TRP 31 A LEU 32 n 32 LEU 32 A GLY 33 n 33 GLY 33 A GLU 34 n 34 GLU 34 A LEU 35 n 35 LEU 35 A GLN 36 n 36 GLN 36 A PRO 37 n 37 PRO 37 A TYR 38 n 38 TYR 38 A THR 39 n 39 THR 39 A TRP 40 n 40 TRP 40 A ARG 41 n 41 ARG 41 A ASN 42 n 42 ASN 42 A GLU 43 n 43 GLU 43 A SER 44 n 44 SER 44 A ASP 45 n 45 ASP 45 A THR 46 n 46 THR 46 A ILE 47 n 47 ILE 47 A ARG 48 n 48 ARG 48 A PHE 49 n 49 PHE 49 A LEU 50 n 50 LEU 50 A LYS 51 n 51 LYS 51 A PRO 52 n 52 PRO 52 A TRP 53 n 53 TRP 53 A SER 54 n 54 SER 54 A ARG 55 n 55 ARG 55 A GLY 56 n 56 GLY 56 A THR 57 n 57 THR 57 A PHE 58 n 58 PHE 58 A SER 59 n 59 SER 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A GLN 62 n 62 GLN 62 A TRP 63 n 63 TRP 63 A GLU 64 n 64 GLU 64 A GLN 65 n 65 GLN 65 A LEU 66 n 66 LEU 66 A GLN 67 n 67 GLN 67 A HIS 68 n 68 HIS 68 A THR 69 n 69 THR 69 A LEU 70 n 70 LEU 70 A LEU 71 n 71 LEU 71 A VAL 72 n 72 VAL 72 A TYR 73 n 73 TYR 73 A ARG 74 n 74 ARG 74 A SER 75 n 75 SER 75 A SER 76 n 76 SER 76 A PHE 77 n 77 PHE 77 A THR 78 n 78 THR 78 A ARG 79 n 79 ARG 79 A ASP 80 n 80 ASP 80 A ILE 81 n 81 ILE 81 A TRP 82 n 82 TRP 82 A GLU 83 n 83 GLU 83 A PHE 84 n 84 PHE 84 A VAL 85 n 85 VAL 85 A GLU 86 n 86 GLU 86 A LYS 87 n 87 LYS 87 A LEU 88 n 88 LEU 88 A HIS 89 n 89 HIS 89 A VAL 90 n 90 VAL 90 A GLU 91 n 91 GLU 91 A TYR 92 n 92 TYR 92 A PRO 93 n 93 PRO 93 A LEU 94 n 94 LEU 94 A GLU 95 n 95 GLU 95 A ILE 96 n 96 ILE 96 A GLN 97 n 97 GLN 97 A ILE 98 n 98 ILE 98 A ALA 99 n 99 ALA 99 A THR 100 n 100 THR 100 A GLY 101 n 101 GLY 101 A CYS 102 n 102 CYS 102 A GLU 103 n 103 GLU 103 A LEU 104 n 104 LEU 104 A LEU 105 n 105 LEU 105 A n 106 106 A n 107 107 A n 108 108 A n 109 109 A SER 110 n 110 SER 110 A GLU 111 n 111 GLU 111 A SER 112 n 112 SER 112 A PHE 113 n 113 PHE 113 A LEU 114 n 114 LEU 114 A ARG 115 n 115 ARG 115 A ALA 116 n 116 ALA 116 A ALA 117 n 117 ALA 117 A PHE 118 n 118 PHE 118 A GLN 119 n 119 GLN 119 A GLY 120 n 120 GLY 120 A ARG 121 n 121 ARG 121 A ASP 122 n 122 ASP 122 A VAL 123 n 123 VAL 123 A LEU 124 n 124 LEU 124 A SER 125 n 125 SER 125 A PHE 126 n 126 PHE 126 A GLN 127 n 127 GLN 127 A GLY 128 n 128 GLY 128 A MET 129 n 129 MET 129 A SER 130 n 130 SER 130 A TRP 131 n 131 TRP 131 A VAL 132 n 132 VAL 132 A SER 133 n 133 SER 133 A ALA 134 n 134 ALA 134 A PRO 135 n 135 PRO 135 A ASP 136 n 136 ASP 136 A ALA 137 n 137 ALA 137 A PRO 138 n 138 PRO 138 A PRO 139 n 139 PRO 139 A PHE 140 n 140 PHE 140 A ILE 141 n 141 ILE 141 A GLN 142 n 142 GLN 142 A GLU 143 n 143 GLU 143 A VAL 144 n 144 VAL 144 A ILE 145 n 145 ILE 145 A LYS 146 n 146 LYS 146 A VAL 147 n 147 VAL 147 A LEU 148 n 148 LEU 148 A ASN 149 n 149 ASN 149 A GLN 150 n 150 GLN 150 A ASN 151 n 151 ASN 151 A GLN 152 n 152 GLN 152 A GLY 153 n 153 GLY 153 A THR 154 n 154 THR 154 A LYS 155 n 155 LYS 155 A GLU 156 n 156 GLU 156 A THR 157 n 157 THR 157 A VAL 158 n 158 VAL 158 A HIS 159 n 159 HIS 159 A TRP 160 n 160 TRP 160 A LEU 161 n 161 LEU 161 A LEU 162 n 162 LEU 162 A HIS 163 n 163 HIS 163 A ASP 164 n 164 ASP 164 A ILE 165 n 165 ILE 165 A TRP 166 n 166 TRP 166 A PRO 167 n 167 PRO 167 A GLU 168 n 168 GLU 168 A LEU 169 n 169 LEU 169 A VAL 170 n 170 VAL 170 A ARG 171 n 171 ARG 171 A GLY 172 n 172 GLY 172 A VAL 173 n 173 VAL 173 A LEU 174 n 174 LEU 174 A GLN 175 n 175 GLN 175 A THR 176 n 176 THR 176 A GLY 177 n 177 GLY 177 A LYS 178 n 178 LYS 178 A SER 179 n 179 SER 179 A GLU 180 n 180 GLU 180 A LEU 181 n 181 LEU 181 A GLU 182 n 182 GLU 182 A LYS 183 n 183 LYS 183 A GLN 184 n 184 GLN 184 A VAL 185 n 185 VAL 185 A LYS 186 n 186 LYS 186 A PRO 187 n 187 PRO 187 A GLU 188 n 188 GLU 188 A ALA 189 n 189 ALA 189 A TRP 190 n 190 TRP 190 A LEU 191 n 191 LEU 191 A SER 192 n 192 SER 192 A SER 193 n 193 SER 193 A GLY 194 n 194 GLY 194 A PRO 195 n 195 PRO 195 A SER 196 n 196 SER 196 A PRO 197 n 197 PRO 197 A GLY 198 n 198 GLY 198 A PRO 199 n 199 PRO 199 A GLY 200 n 200 GLY 200 A ARG 201 n 201 ARG 201 A LEU 202 n 202 LEU 202 A LEU 203 n 203 LEU 203 A LEU 204 n 204 LEU 204 A VAL 205 n 205 VAL 205 A CYS 206 n 206 CYS 206 A HIS 207 n 207 HIS 207 A VAL 208 n 208 VAL 208 A SER 209 n 209 SER 209 A GLY 210 n 210 GLY 210 A PHE 211 n 211 PHE 211 A TYR 212 n 212 TYR 212 A PRO 213 n 213 PRO 213 A LYS 214 n 214 LYS 214 A PRO 215 n 215 PRO 215 A VAL 216 n 216 VAL 216 A ARG 217 n 217 ARG 217 A VAL 218 n 218 VAL 218 A MET 219 n 219 MET 219 A TRP 220 n 220 TRP 220 A MET 221 n 221 MET 221 A ARG 222 n 222 ARG 222 A GLY 223 n 223 GLY 223 A GLU 224 n 224 GLU 224 A GLN 225 n 225 GLN 225 A GLU 226 n 226 GLU 226 A GLU 227 n 227 GLU 227 A PRO 228 n 228 PRO 228 A GLY 229 n 229 GLY 229 A THR 230 n 230 THR 230 A ARG 231 n 231 ARG 231 A GLN 232 n 232 GLN 232 A GLY 233 n 233 GLY 233 A ASP 234 n 234 ASP 234 A VAL 235 n 235 VAL 235 A MET 236 n 236 MET 236 A PRO 237 n 237 PRO 237 A ASN 238 n 238 ASN 238 A ALA 239 n 239 ALA 239 A ASP 240 n 240 ASP 240 A SER 241 n 241 SER 241 A THR 242 n 242 THR 242 A TRP 243 n 243 TRP 243 A TYR 244 n 244 TYR 244 A LEU 245 n 245 LEU 245 A ARG 246 n 246 ARG 246 A VAL 247 n 247 VAL 247 A THR 248 n 248 THR 248 A LEU 249 n 249 LEU 249 A ASP 250 n 250 ASP 250 A VAL 251 n 251 VAL 251 A ALA 252 n 252 ALA 252 A ALA 253 n 253 ALA 253 A GLY 254 n 254 GLY 254 A GLU 255 n 255 GLU 255 A VAL 256 n 256 VAL 256 A ALA 257 n 257 ALA 257 A GLY 258 n 258 GLY 258 A LEU 259 n 259 LEU 259 A SER 260 n 260 SER 260 A CYS 261 n 261 CYS 261 A GLN 262 n 262 GLN 262 A VAL 263 n 263 VAL 263 A LYS 264 n 264 LYS 264 A HIS 265 n 265 HIS 265 A SER 266 n 266 SER 266 A SER 267 n 267 SER 267 A LEU 268 n 268 LEU 268 A GLY 269 n 269 GLY 269 A ASP 270 n 270 ASP 270 A GLN 271 n 271 GLN 271 A ASP 272 n 272 ASP 272 A ILE 273 n 273 ILE 273 A ILE 274 n 274 ILE 274 A LEU 275 n 275 LEU 275 A TYR 276 n 276 TYR 276 A TRP 277 n 277 TRP 277 A HIS 278 n 278 HIS 278 A HIS 279 n 279 HIS 279 A n 280 280 A n 281 281 A n 282 282 A n 283 283 A ILE 1 n 1 ILE 1 B GLN 2 n 2 GLN 2 B ARG 3 n 3 ARG 3 B PRO 4 n 4 PRO 4 B PRO 5 n 5 PRO 5 B LYS 6 n 6 LYS 6 B ILE 7 n 7 ILE 7 B GLN 8 n 8 GLN 8 B VAL 9 n 9 VAL 9 B TYR 10 n 10 TYR 10 B SER 11 n 11 SER 11 B ARG 12 n 12 ARG 12 B HIS 13 n 13 HIS 13 B PRO 14 n 14 PRO 14 B PRO 15 n 15 PRO 15 B GLU 16 n 16 GLU 16 B ASP 17 n 17 ASP 17 B GLY 18 n 18 GLY 18 B LYS 19 n 19 LYS 19 B PRO 20 n 20 PRO 20 B ASN 21 n 21 ASN 21 B TYR 22 n 22 TYR 22 B LEU 23 n 23 LEU 23 B ASN 24 n 24 ASN 24 B CYS 25 n 25 CYS 25 B TYR 26 n 26 TYR 26 B VAL 27 n 27 VAL 27 B TYR 28 n 28 TYR 28 B GLY 29 n 29 GLY 29 B PHE 30 n 30 PHE 30 B HIS 31 n 31 HIS 31 B PRO 32 n 32 PRO 32 B PRO 33 n 33 PRO 33 B GLN 34 n 34 GLN 34 B ILE 35 n 35 ILE 35 B GLU 36 n 36 GLU 36 B ILE 37 n 37 ILE 37 B ASP 38 n 38 ASP 38 B LEU 39 n 39 LEU 39 B LEU 40 n 40 LEU 40 B LYS 41 n 41 LYS 41 B ASN 42 n 42 ASN 42 B GLY 43 n 43 GLY 43 B GLU 44 n 44 GLU 44 B LYS 45 n 45 LYS 45 B ILE 46 n 46 ILE 46 B LYS 47 n 47 LYS 47 B SER 48 n 48 SER 48 B GLU 49 n 49 GLU 49 B GLN 50 n 50 GLN 50 B SER 51 n 51 SER 51 B ASP 52 n 52 ASP 52 B LEU 53 n 53 LEU 53 B SER 54 n 54 SER 54 B PHE 55 n 55 PHE 55 B SER 56 n 56 SER 56 B LYS 57 n 57 LYS 57 B ASP 58 n 58 ASP 58 B TRP 59 n 59 TRP 59 B SER 60 n 60 SER 60 B PHE 61 n 61 PHE 61 B TYR 62 n 62 TYR 62 B LEU 63 n 63 LEU 63 B LEU 64 n 64 LEU 64 B SER 65 n 65 SER 65 B HIS 66 n 66 HIS 66 B ALA 67 n 67 ALA 67 B GLU 68 n 68 GLU 68 B PHE 69 n 69 PHE 69 B THR 70 n 70 THR 70 B PRO 71 n 71 PRO 71 B ASN 72 n 72 ASN 72 B SER 73 n 73 SER 73 B LYS 74 n 74 LYS 74 B ASP 75 n 75 ASP 75 B GLN 76 n 76 GLN 76 B TYR 77 n 77 TYR 77 B SER 78 n 78 SER 78 B CYS 79 n 79 CYS 79 B ARG 80 n 80 ARG 80 B VAL 81 n 81 VAL 81 B LYS 82 n 82 LYS 82 B HIS 83 n 83 HIS 83 B VAL 84 n 84 VAL 84 B THR 85 n 85 THR 85 B LEU 86 n 86 LEU 86 B GLU 87 n 87 GLU 87 B GLN 88 n 88 GLN 88 B PRO 89 n 89 PRO 89 B ARG 90 n 90 ARG 90 B ILE 91 n 91 ILE 91 B VAL 92 n 92 VAL 92 B LYS 93 n 93 LYS 93 B TRP 94 n 94 TRP 94 B ASP 95 n 95 ASP 95 B ARG 96 n 96 ARG 96 B ASP 97 n 97 ASP 97 B n 98 98 B n 1 1 C n 2 2 C n 3 3 C n 4 4 C n 5 5 C n 6 6 C n 7 7 C PHE 8 n 8 PHE 8 C SER 9 n 9 SER 9 C PHE 10 n 10 PHE 10 C GLN 11 n 11 GLN 11 C GLY 12 n 12 GLY 12 C LEU 13 n 13 LEU 13 C GLN 14 n 14 GLN 14 C ILE 15 n 15 ILE 15 C SER 16 n 16 SER 16 C SER 17 n 17 SER 17 C PHE 18 n 18 PHE 18 C ALA 19 n 19 ALA 19 C ASN 20 n 20 ASN 20 C ARG 21 n 21 ARG 21 C SER 22 n 22 SER 22 C TRP 23 n 23 TRP 23 C THR 24 n 24 THR 24 C ARG 25 n 25 ARG 25 C THR 26 n 26 THR 26 C ASP 27 n 27 ASP 27 C GLY 28 n 28 GLY 28 C LEU 29 n 29 LEU 29 C ALA 30 n 30 ALA 30 C TRP 31 n 31 TRP 31 C LEU 32 n 32 LEU 32 C GLY 33 n 33 GLY 33 C GLU 34 n 34 GLU 34 C LEU 35 n 35 LEU 35 C GLN 36 n 36 GLN 36 C PRO 37 n 37 PRO 37 C TYR 38 n 38 TYR 38 C THR 39 n 39 THR 39 C TRP 40 n 40 TRP 40 C ARG 41 n 41 ARG 41 C ASN 42 n 42 ASN 42 C GLU 43 n 43 GLU 43 C SER 44 n 44 SER 44 C ASP 45 n 45 ASP 45 C THR 46 n 46 THR 46 C ILE 47 n 47 ILE 47 C ARG 48 n 48 ARG 48 C PHE 49 n 49 PHE 49 C LEU 50 n 50 LEU 50 C LYS 51 n 51 LYS 51 C PRO 52 n 52 PRO 52 C TRP 53 n 53 TRP 53 C SER 54 n 54 SER 54 C ARG 55 n 55 ARG 55 C GLY 56 n 56 GLY 56 C THR 57 n 57 THR 57 C PHE 58 n 58 PHE 58 C SER 59 n 59 SER 59 C ASP 60 n 60 ASP 60 C GLN 61 n 61 GLN 61 C GLN 62 n 62 GLN 62 C TRP 63 n 63 TRP 63 C GLU 64 n 64 GLU 64 C GLN 65 n 65 GLN 65 C LEU 66 n 66 LEU 66 C GLN 67 n 67 GLN 67 C HIS 68 n 68 HIS 68 C THR 69 n 69 THR 69 C LEU 70 n 70 LEU 70 C LEU 71 n 71 LEU 71 C VAL 72 n 72 VAL 72 C TYR 73 n 73 TYR 73 C ARG 74 n 74 ARG 74 C SER 75 n 75 SER 75 C SER 76 n 76 SER 76 C PHE 77 n 77 PHE 77 C THR 78 n 78 THR 78 C ARG 79 n 79 ARG 79 C ASP 80 n 80 ASP 80 C ILE 81 n 81 ILE 81 C TRP 82 n 82 TRP 82 C GLU 83 n 83 GLU 83 C PHE 84 n 84 PHE 84 C VAL 85 n 85 VAL 85 C GLU 86 n 86 GLU 86 C LYS 87 n 87 LYS 87 C LEU 88 n 88 LEU 88 C HIS 89 n 89 HIS 89 C VAL 90 n 90 VAL 90 C GLU 91 n 91 GLU 91 C TYR 92 n 92 TYR 92 C PRO 93 n 93 PRO 93 C LEU 94 n 94 LEU 94 C GLU 95 n 95 GLU 95 C ILE 96 n 96 ILE 96 C GLN 97 n 97 GLN 97 C ILE 98 n 98 ILE 98 C ALA 99 n 99 ALA 99 C THR 100 n 100 THR 100 C GLY 101 n 101 GLY 101 C CYS 102 n 102 CYS 102 C GLU 103 n 103 GLU 103 C LEU 104 n 104 LEU 104 C LEU 105 n 105 LEU 105 C n 106 106 C n 107 107 C n 108 108 C n 109 109 C SER 110 n 110 SER 110 C GLU 111 n 111 GLU 111 C SER 112 n 112 SER 112 C PHE 113 n 113 PHE 113 C LEU 114 n 114 LEU 114 C ARG 115 n 115 ARG 115 C ALA 116 n 116 ALA 116 C ALA 117 n 117 ALA 117 C PHE 118 n 118 PHE 118 C GLN 119 n 119 GLN 119 C GLY 120 n 120 GLY 120 C ARG 121 n 121 ARG 121 C ASP 122 n 122 ASP 122 C VAL 123 n 123 VAL 123 C LEU 124 n 124 LEU 124 C SER 125 n 125 SER 125 C PHE 126 n 126 PHE 126 C GLN 127 n 127 GLN 127 C GLY 128 n 128 GLY 128 C MET 129 n 129 MET 129 C SER 130 n 130 SER 130 C TRP 131 n 131 TRP 131 C VAL 132 n 132 VAL 132 C SER 133 n 133 SER 133 C ALA 134 n 134 ALA 134 C PRO 135 n 135 PRO 135 C ASP 136 n 136 ASP 136 C ALA 137 n 137 ALA 137 C PRO 138 n 138 PRO 138 C PRO 139 n 139 PRO 139 C PHE 140 n 140 PHE 140 C ILE 141 n 141 ILE 141 C GLN 142 n 142 GLN 142 C GLU 143 n 143 GLU 143 C VAL 144 n 144 VAL 144 C ILE 145 n 145 ILE 145 C LYS 146 n 146 LYS 146 C VAL 147 n 147 VAL 147 C LEU 148 n 148 LEU 148 C ASN 149 n 149 ASN 149 C GLN 150 n 150 GLN 150 C ASN 151 n 151 ASN 151 C GLN 152 n 152 GLN 152 C GLY 153 n 153 GLY 153 C THR 154 n 154 THR 154 C LYS 155 n 155 LYS 155 C GLU 156 n 156 GLU 156 C THR 157 n 157 THR 157 C VAL 158 n 158 VAL 158 C HIS 159 n 159 HIS 159 C TRP 160 n 160 TRP 160 C LEU 161 n 161 LEU 161 C LEU 162 n 162 LEU 162 C HIS 163 n 163 HIS 163 C ASP 164 n 164 ASP 164 C ILE 165 n 165 ILE 165 C TRP 166 n 166 TRP 166 C PRO 167 n 167 PRO 167 C GLU 168 n 168 GLU 168 C LEU 169 n 169 LEU 169 C VAL 170 n 170 VAL 170 C ARG 171 n 171 ARG 171 C GLY 172 n 172 GLY 172 C VAL 173 n 173 VAL 173 C LEU 174 n 174 LEU 174 C GLN 175 n 175 GLN 175 C THR 176 n 176 THR 176 C GLY 177 n 177 GLY 177 C LYS 178 n 178 LYS 178 C SER 179 n 179 SER 179 C GLU 180 n 180 GLU 180 C LEU 181 n 181 LEU 181 C GLU 182 n 182 GLU 182 C LYS 183 n 183 LYS 183 C GLN 184 n 184 GLN 184 C VAL 185 n 185 VAL 185 C LYS 186 n 186 LYS 186 C PRO 187 n 187 PRO 187 C GLU 188 n 188 GLU 188 C ALA 189 n 189 ALA 189 C TRP 190 n 190 TRP 190 C LEU 191 n 191 LEU 191 C SER 192 n 192 SER 192 C SER 193 n 193 SER 193 C GLY 194 n 194 GLY 194 C PRO 195 n 195 PRO 195 C SER 196 n 196 SER 196 C PRO 197 n 197 PRO 197 C GLY 198 n 198 GLY 198 C PRO 199 n 199 PRO 199 C GLY 200 n 200 GLY 200 C ARG 201 n 201 ARG 201 C LEU 202 n 202 LEU 202 C LEU 203 n 203 LEU 203 C LEU 204 n 204 LEU 204 C VAL 205 n 205 VAL 205 C CYS 206 n 206 CYS 206 C HIS 207 n 207 HIS 207 C VAL 208 n 208 VAL 208 C SER 209 n 209 SER 209 C GLY 210 n 210 GLY 210 C PHE 211 n 211 PHE 211 C TYR 212 n 212 TYR 212 C PRO 213 n 213 PRO 213 C LYS 214 n 214 LYS 214 C PRO 215 n 215 PRO 215 C VAL 216 n 216 VAL 216 C ARG 217 n 217 ARG 217 C VAL 218 n 218 VAL 218 C MET 219 n 219 MET 219 C TRP 220 n 220 TRP 220 C MET 221 n 221 MET 221 C ARG 222 n 222 ARG 222 C GLY 223 n 223 GLY 223 C GLU 224 n 224 GLU 224 C GLN 225 n 225 GLN 225 C GLU 226 n 226 GLU 226 C GLU 227 n 227 GLU 227 C PRO 228 n 228 PRO 228 C GLY 229 n 229 GLY 229 C THR 230 n 230 THR 230 C ARG 231 n 231 ARG 231 C GLN 232 n 232 GLN 232 C GLY 233 n 233 GLY 233 C ASP 234 n 234 ASP 234 C VAL 235 n 235 VAL 235 C MET 236 n 236 MET 236 C PRO 237 n 237 PRO 237 C ASN 238 n 238 ASN 238 C ALA 239 n 239 ALA 239 C ASP 240 n 240 ASP 240 C SER 241 n 241 SER 241 C THR 242 n 242 THR 242 C TRP 243 n 243 TRP 243 C TYR 244 n 244 TYR 244 C LEU 245 n 245 LEU 245 C ARG 246 n 246 ARG 246 C VAL 247 n 247 VAL 247 C THR 248 n 248 THR 248 C LEU 249 n 249 LEU 249 C ASP 250 n 250 ASP 250 C VAL 251 n 251 VAL 251 C n 252 252 C n 253 253 C n 254 254 C n 255 255 C n 256 256 C ALA 257 n 257 ALA 257 C GLY 258 n 258 GLY 258 C LEU 259 n 259 LEU 259 C SER 260 n 260 SER 260 C CYS 261 n 261 CYS 261 C GLN 262 n 262 GLN 262 C VAL 263 n 263 VAL 263 C LYS 264 n 264 LYS 264 C HIS 265 n 265 HIS 265 C SER 266 n 266 SER 266 C SER 267 n 267 SER 267 C LEU 268 n 268 LEU 268 C GLY 269 n 269 GLY 269 C ASP 270 n 270 ASP 270 C GLN 271 n 271 GLN 271 C ASP 272 n 272 ASP 272 C ILE 273 n 273 ILE 273 C ILE 274 n 274 ILE 274 C LEU 275 n 275 LEU 275 C TYR 276 n 276 TYR 276 C TRP 277 n 277 TRP 277 C HIS 278 n 278 HIS 278 C HIS 279 n 279 HIS 279 C n 280 280 C n 281 281 C n 282 282 C n 283 283 C ILE 1 n 1 ILE 1 D GLN 2 n 2 GLN 2 D ARG 3 n 3 ARG 3 D PRO 4 n 4 PRO 4 D PRO 5 n 5 PRO 5 D LYS 6 n 6 LYS 6 D ILE 7 n 7 ILE 7 D GLN 8 n 8 GLN 8 D VAL 9 n 9 VAL 9 D TYR 10 n 10 TYR 10 D SER 11 n 11 SER 11 D ARG 12 n 12 ARG 12 D HIS 13 n 13 HIS 13 D PRO 14 n 14 PRO 14 D PRO 15 n 15 PRO 15 D GLU 16 n 16 GLU 16 D ASP 17 n 17 ASP 17 D GLY 18 n 18 GLY 18 D LYS 19 n 19 LYS 19 D PRO 20 n 20 PRO 20 D ASN 21 n 21 ASN 21 D TYR 22 n 22 TYR 22 D LEU 23 n 23 LEU 23 D ASN 24 n 24 ASN 24 D CYS 25 n 25 CYS 25 D TYR 26 n 26 TYR 26 D VAL 27 n 27 VAL 27 D TYR 28 n 28 TYR 28 D GLY 29 n 29 GLY 29 D PHE 30 n 30 PHE 30 D HIS 31 n 31 HIS 31 D PRO 32 n 32 PRO 32 D PRO 33 n 33 PRO 33 D GLN 34 n 34 GLN 34 D ILE 35 n 35 ILE 35 D GLU 36 n 36 GLU 36 D ILE 37 n 37 ILE 37 D ASP 38 n 38 ASP 38 D LEU 39 n 39 LEU 39 D LEU 40 n 40 LEU 40 D LYS 41 n 41 LYS 41 D ASN 42 n 42 ASN 42 D GLY 43 n 43 GLY 43 D GLU 44 n 44 GLU 44 D LYS 45 n 45 LYS 45 D ILE 46 n 46 ILE 46 D LYS 47 n 47 LYS 47 D SER 48 n 48 SER 48 D GLU 49 n 49 GLU 49 D GLN 50 n 50 GLN 50 D SER 51 n 51 SER 51 D ASP 52 n 52 ASP 52 D LEU 53 n 53 LEU 53 D SER 54 n 54 SER 54 D PHE 55 n 55 PHE 55 D SER 56 n 56 SER 56 D LYS 57 n 57 LYS 57 D ASP 58 n 58 ASP 58 D TRP 59 n 59 TRP 59 D SER 60 n 60 SER 60 D PHE 61 n 61 PHE 61 D TYR 62 n 62 TYR 62 D LEU 63 n 63 LEU 63 D LEU 64 n 64 LEU 64 D SER 65 n 65 SER 65 D HIS 66 n 66 HIS 66 D ALA 67 n 67 ALA 67 D GLU 68 n 68 GLU 68 D PHE 69 n 69 PHE 69 D THR 70 n 70 THR 70 D PRO 71 n 71 PRO 71 D ASN 72 n 72 ASN 72 D SER 73 n 73 SER 73 D LYS 74 n 74 LYS 74 D ASP 75 n 75 ASP 75 D GLN 76 n 76 GLN 76 D TYR 77 n 77 TYR 77 D SER 78 n 78 SER 78 D CYS 79 n 79 CYS 79 D ARG 80 n 80 ARG 80 D VAL 81 n 81 VAL 81 D LYS 82 n 82 LYS 82 D HIS 83 n 83 HIS 83 D VAL 84 n 84 VAL 84 D THR 85 n 85 THR 85 D LEU 86 n 86 LEU 86 D GLU 87 n 87 GLU 87 D GLN 88 n 88 GLN 88 D PRO 89 n 89 PRO 89 D ARG 90 n 90 ARG 90 D ILE 91 n 91 ILE 91 D VAL 92 n 92 VAL 92 D LYS 93 n 93 LYS 93 D TRP 94 n 94 TRP 94 D ASP 95 n 95 ASP 95 D ARG 96 n 96 ARG 96 D ASP 97 n 97 ASP 97 D n 98 98 D author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 3750 -1 19300 4060 4 19290 A ASN 42 GLYCOSYLATION SITE A ASN 42 ASN C ASN 42 GLYCOSYLATION SITE C ASN 42 ASN A ASN 20 GLYCOSYLATION SITE A ASN 20 ASN C ASN 20 GLYCOSYLATION SITE C ASN 20 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ARG 48 A O ARG 48 A N THR 39 A N THR 39 A O LEU 35 A O LEU 35 A N LEU 32 A N LEU 32 A O LEU 29 A O LEU 29 A N LEU 13 A N LEU 13 A N SER 16 A N SER 16 A O ILE 96 A O ILE 96 A N ALA 99 A N ALA 99 A O ARG 115 A O ARG 115 A N ALA 116 A N ALA 116 A O VAL 123 A O VAL 123 A N GLN 127 A N GLN 127 A O SER 130 A O SER 130 A N TRP 190 A N TRP 190 A O HIS 207 A O HIS 207 A N LEU 202 A N LEU 202 A O VAL 251 A O VAL 251 A O THR 248 A O THR 248 A N ARG 231 A N ARG 231 A N TRP 190 A N TRP 190 A O HIS 207 A O HIS 207 A N LEU 202 A N LEU 202 A O VAL 251 A O VAL 251 A O TYR 244 A O TYR 244 A N MET 236 A N MET 236 A O GLN 225 A O GLN 225 A N ARG 222 A N ARG 222 A N ARG 217 A N ARG 217 A O LYS 264 A O LYS 264 A N VAL 263 A N VAL 263 A O ILE 273 A O ILE 273 B N TYR 10 B N TYR 10 B O ASN 24 B O ASN 24 B N CYS 25 B N CYS 25 B O SER 65 B O SER 65 B O HIS 66 B O HIS 66 B N GLU 49 B N GLU 49 B N TYR 10 B N TYR 10 B O ASN 24 B O ASN 24 B N CYS 25 B N CYS 25 B O SER 65 B O SER 65 B O TYR 62 B O TYR 62 B N SER 54 B N SER 54 B O GLU 44 B O GLU 44 B N LYS 41 B N LYS 41 B N ASP 38 B N ASP 38 B O ARG 80 B O ARG 80 B N CYS 79 B N CYS 79 B O VAL 92 B O VAL 92 C O ARG 48 C O ARG 48 C N THR 39 C N THR 39 C O LEU 35 C O LEU 35 C N LEU 32 C N LEU 32 C O LEU 29 C O LEU 29 C N LEU 13 C N LEU 13 C N SER 16 C N SER 16 C O ILE 96 C O ILE 96 C N ALA 99 C N ALA 99 C O ARG 115 C O ARG 115 C N ALA 116 C N ALA 116 C O VAL 123 C O VAL 123 C N GLN 127 C N GLN 127 C O SER 130 C O SER 130 C N TRP 190 C N TRP 190 C O HIS 207 C O HIS 207 C N LEU 202 C N LEU 202 C O VAL 251 C O VAL 251 C O THR 248 C O THR 248 C N ARG 231 C N ARG 231 C N TRP 190 C N TRP 190 C O HIS 207 C O HIS 207 C N LEU 202 C N LEU 202 C O VAL 251 C O VAL 251 C O TYR 244 C O TYR 244 C N MET 236 C N MET 236 C O GLN 225 C O GLN 225 C N ARG 222 C N ARG 222 C N ARG 217 C N ARG 217 C O LYS 264 C O LYS 264 C N VAL 263 C N VAL 263 C O ILE 273 C O ILE 273 D N TYR 10 D N TYR 10 D O ASN 24 D O ASN 24 D N CYS 25 D N CYS 25 D O SER 65 D O SER 65 D O HIS 66 D O HIS 66 D N GLU 49 D N GLU 49 D N TYR 10 D N TYR 10 D O ASN 24 D O ASN 24 D N CYS 25 D N CYS 25 D O SER 65 D O SER 65 D O TYR 62 D O TYR 62 D N SER 54 D N SER 54 D O GLU 44 D O GLU 44 D N LYS 41 D N LYS 41 D N LEU 40 D N LEU 40 D O SER 78 D O SER 78 D N CYS 79 D N CYS 79 D O VAL 92 D O VAL 92 1 A CG GLN 225 A CG GLN 225 1 Y 1 A CD GLN 225 A CD GLN 225 1 Y 1 A OE1 GLN 225 A OE1 GLN 225 1 Y 1 A NE2 GLN 225 A NE2 GLN 225 1 Y 1 B CG GLU 87 B CG GLU 87 1 Y 1 B CD GLU 87 B CD GLU 87 1 Y 1 B OE1 GLU 87 B OE1 GLU 87 1 Y 1 B OE2 GLU 87 B OE2 GLU 87 1 Y 1 C CG GLN 61 C CG GLN 61 1 Y 1 C CD GLN 61 C CD GLN 61 1 Y 1 C OE1 GLN 61 C OE1 GLN 61 1 Y 1 C NE2 GLN 61 C NE2 GLN 61 1 Y 1 C CG GLU 64 C CG GLU 64 1 Y 1 C CD GLU 64 C CD GLU 64 1 Y 1 C OE1 GLU 64 C OE1 GLU 64 1 Y 1 C OE2 GLU 64 C OE2 GLU 64 1 Y 1 C CG GLN 225 C CG GLN 225 1 Y 1 C CD GLN 225 C CD GLN 225 1 Y 1 C OE1 GLN 225 C OE1 GLN 225 1 Y 1 C NE2 GLN 225 C NE2 GLN 225 1 Y 1 D CG LYS 19 D CG LYS 19 1 Y 1 D CD LYS 19 D CD LYS 19 1 Y 1 D CE LYS 19 D CE LYS 19 1 Y 1 D NZ LYS 19 D NZ LYS 19 1 Y 1 D CG GLU 87 D CG GLU 87 1 Y 1 D CD GLU 87 D CD GLU 87 1 Y 1 D OE1 GLU 87 D OE1 GLU 87 1 Y 1 D OE2 GLU 87 D OE2 GLU 87 1 Y 1 A SER 1 A SER 1 1 Y 1 A PRO 2 A PRO 2 1 Y 1 A ALA 3 A ALA 3 1 Y 1 A PRO 4 A PRO 4 1 Y 1 A GLN 5 A GLN 5 1 Y 1 A THR 6 A THR 6 1 Y 1 A PRO 106 A PRO 106 1 Y 1 A ARG 107 A ARG 107 1 Y 1 A ASN 108 A ASN 108 1 Y 1 A ILE 109 A ILE 109 1 Y 1 A HIS 280 A HIS 280 1 Y 1 A HIS 281 A HIS 281 1 Y 1 A HIS 282 A HIS 282 1 Y 1 A HIS 283 A HIS 283 1 Y 1 B LEU 98 B LEU 98 1 Y 1 C SER 1 C SER 1 1 Y 1 C PRO 2 C PRO 2 1 Y 1 C ALA 3 C ALA 3 1 Y 1 C PRO 4 C PRO 4 1 Y 1 C GLN 5 C GLN 5 1 Y 1 C THR 6 C THR 6 1 Y 1 C PRO 7 C PRO 7 1 Y 1 C PRO 106 C PRO 106 1 Y 1 C ARG 107 C ARG 107 1 Y 1 C ASN 108 C ASN 108 1 Y 1 C ILE 109 C ILE 109 1 Y 1 C ALA 252 C ALA 252 1 Y 1 C ALA 253 C ALA 253 1 Y 1 C GLY 254 C GLY 254 1 Y 1 C GLU 255 C GLU 255 1 Y 1 C VAL 256 C VAL 256 1 Y 1 C HIS 280 C HIS 280 1 Y 1 C HIS 281 C HIS 281 1 Y 1 C HIS 282 C HIS 282 1 Y 1 C HIS 283 C HIS 283 1 Y 1 D LEU 98 D LEU 98 1 Y 1 A A CE2 CD2 TRP TRP 82 82 0.084 0.012 1.409 1.493 N 1 C C CE2 CD2 TRP TRP 82 82 0.086 0.012 1.409 1.495 N 1 C C CG CD2 HIS HIS 279 279 0.057 0.009 1.354 1.411 N 1 A HIS 89 38.94 61.66 1 A ASN 149 -68.81 0.08 1 A PRO 213 -68.41 -165.74 1 A HIS 278 -97.10 -78.11 1 B LYS 47 -59.53 109.21 1 C VAL 123 -130.90 -45.08 1 C PRO 213 -68.96 -169.87 1 C SER 266 -38.96 -32.52 1 D ASP 17 -38.52 126.21 125.660 46.0834 18.800 -0.0000 0.0000 0.0000 -0.0000 0.0000 0.0100 0.9150 0.7980 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY 0.2909 0.2220 0.2247 0.2247 2.864 46.748 1112 27287 4.1 98.48 1.000 1.000 17.1050 0.3010 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.3000 0.0880 0.8000 0.8000 1.2000 PDB ENTRY 3L9R MAXIMUM LIKELIHOOD MASK 2.864 46.748 29 6216 262 0 5925 0.013 0.022 6385 1.523 1.980 8691 6.557 5.000 719 33.426 23.645 299 18.736 15.000 999 21.339 15.000 40 0.089 0.200 940 0.006 0.021 4794 1 A 1 2086 X-RAY DIFFRACTION TIGHT POSITIONAL 0.050 0.050 1 A 1 2086 X-RAY DIFFRACTION TIGHT THERMAL 4.710 0.500 1 B 2 799 X-RAY DIFFRACTION TIGHT POSITIONAL 0.040 0.050 1 B 2 799 X-RAY DIFFRACTION TIGHT THERMAL 2.640 0.500 0.3530 0.2650 2.938 71 1796 1867 20 90.06 72 2.864 168.553 4F7C 27330 27330 0 0 0.114 1 17.9 3.9 99.3 0.586 2.864 3.0 3 2683 1 3.9 98.4 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.6.0104 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-2000 phasing PHASER Crystal structure of bovine CD1d with bound C12-di-sulfatide 1 N N 2 N N 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N 6 N N 7 N N 7 N N 7 N N 7 N N A SER 59 A SER 59 HELX_P A HIS 89 A HIS 89 1 1 31 A PHE 140 A PHE 140 HELX_P A ASN 149 A ASN 149 1 2 10 A ASN 151 A ASN 151 HELX_P A ASP 164 A ASP 164 1 3 14 A ASP 164 A ASP 164 HELX_P A GLY 177 A GLY 177 1 4 14 A GLY 177 A GLY 177 HELX_P A GLU 182 A GLU 182 1 5 6 A SER 267 A SER 267 HELX_P A GLY 269 A GLY 269 5 6 3 C SER 59 C SER 59 HELX_P C HIS 89 C HIS 89 1 7 31 C PHE 140 C PHE 140 HELX_P C ASN 149 C ASN 149 1 8 10 C ASN 151 C ASN 151 HELX_P C ASP 164 C ASP 164 1 9 14 C ASP 164 C ASP 164 HELX_P C GLY 177 C GLY 177 1 10 14 C GLY 177 C GLY 177 HELX_P C GLU 182 C GLU 182 1 11 6 C HIS 265 C HIS 265 HELX_P C GLY 269 C GLY 269 5 12 5 disulf 2.082 A CYS 206 A SG CYS 206 1_555 A CYS 261 A SG CYS 261 1_555 disulf 2.060 B CYS 25 B SG CYS 25 1_555 B CYS 79 B SG CYS 79 1_555 disulf 2.069 C CYS 206 C SG CYS 206 1_555 C CYS 261 C SG CYS 261 1_555 disulf 2.059 D CYS 25 D SG CYS 25 1_555 D CYS 79 D SG CYS 79 1_555 covale 1.449 one N-Glycosylation A ASN 20 A ND2 ASN 20 1_555 E NAG 1 E C1 NAG 1_555 covale 1.434 one N-Glycosylation A ASN 42 A ND2 ASN 42 1_555 F NAG 1 F C1 NAG 1_555 covale 1.450 one N-Glycosylation C ASN 20 C ND2 ASN 20 1_555 G NAG 1 G C1 NAG 1_555 covale 1.441 one N-Glycosylation C ASN 42 C ND2 ASN 42 1_555 H NAG 1 H C1 NAG 1_555 covale 1.435 both E NAG 1 E O4 NAG 1_555 E NAG 2 E C1 NAG 1_555 covale 1.436 both F NAG 1 F O4 NAG 1_555 F NAG 2 F C1 NAG 1_555 covale 1.453 both F NAG 2 F O4 NAG 1_555 F BMA 3 F C1 BMA 1_555 covale 1.444 both G NAG 1 G O4 NAG 1_555 G NAG 2 G C1 NAG 1_555 covale 1.460 both G NAG 2 G O4 NAG 1_555 G BMA 3 G C1 BMA 1_555 covale 1.444 both H NAG 1 H O4 NAG 1_555 H NAG 2 H C1 NAG 1_555 covale 1.444 both H NAG 2 H O4 NAG 1_555 H BMA 3 H C1 BMA 1_555 covale 1.445 both H BMA 3 H O3 BMA 1_555 H BMA 4 H C1 BMA 1_555 IMMUNE SYSTEM protein-glycolipid complex, MHC-fold, Ig-fold, antigen presentation, TCR, membrane, IMMUNE SYSTEM A TYR 92 A TYR 92 1 A PRO 93 A PRO 93 -6.14 A TYR 212 A TYR 212 1 A PRO 213 A PRO 213 -0.88 B HIS 31 B HIS 31 1 B PRO 32 B PRO 32 4.66 C TYR 92 C TYR 92 1 C PRO 93 C PRO 93 -5.86 C TYR 212 C TYR 212 1 C PRO 213 C PRO 213 -2.58 D HIS 31 D HIS 31 1 D PRO 32 D PRO 32 2.29 A C B D A SER 9 A SER 9 A TYR 276 A TYR 276 1 C SER 9 C SER 9 C TYR 276 C TYR 276 1 B ILE 1 B ILE 1 B ARG 96 B ARG 96 1 D ILE 1 D ILE 1 D ARG 96 D ARG 96 1 A1L565_BOVIN UNP 1 129 A1L565 SPAPQTPFSFQGLQISSFANRSWTRTDGLAWLGELQPYTWRNESDTIRFLKPWSRGTFSDQQWEQLQHTLLVYRSSFTRD IWEFVEKLHVEYPLEIQIATGCELLPRNISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHW LLHDIWPELVRGVLQTGKSELEKQVKPEAWLSSGPSPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEEPGTRQGDVMPNAD STWYLRVTLDVAAGEVAGLSCQVKHSSLGDQDIILYW B2MG_BOVIN UNP 2 21 P01888 IQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSCR VKHVTLEQPRIVKWDRDL 129 405 4F7C 1 277 A1L565 A 1 1 277 21 118 4F7C 1 98 P01888 B 2 1 98 129 405 4F7C 1 277 A1L565 C 1 1 277 21 118 4F7C 1 98 P01888 D 2 1 98 1 expression tag HIS 278 4F7C A A1L565 UNP 278 1 expression tag HIS 279 4F7C A A1L565 UNP 279 1 expression tag HIS 280 4F7C A A1L565 UNP 280 1 expression tag HIS 281 4F7C A A1L565 UNP 281 1 expression tag HIS 282 4F7C A A1L565 UNP 282 1 expression tag HIS 283 4F7C A A1L565 UNP 283 3 expression tag HIS 278 4F7C C A1L565 UNP 278 3 expression tag HIS 279 4F7C C A1L565 UNP 279 3 expression tag HIS 280 4F7C C A1L565 UNP 280 3 expression tag HIS 281 4F7C C A1L565 UNP 281 3 expression tag HIS 282 4F7C C A1L565 UNP 282 3 expression tag HIS 283 4F7C C A1L565 UNP 283 8 4 4 4 4 4 4 8 4 4 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 48 A ARG 48 A PHE 49 A PHE 49 A LEU 35 A LEU 35 A TRP 40 A TRP 40 A THR 24 A THR 24 A LEU 32 A LEU 32 A PHE 10 A PHE 10 A PHE 18 A PHE 18 A LEU 94 A LEU 94 A GLU 103 A GLU 103 A GLU 111 A GLU 111 A PHE 118 A PHE 118 A ARG 121 A ARG 121 A GLN 127 A GLN 127 A SER 130 A SER 130 A SER 133 A SER 133 A GLU 188 A GLU 188 A SER 193 A SER 193 A ARG 201 A ARG 201 A PHE 211 A PHE 211 A TRP 243 A TRP 243 A ALA 252 A ALA 252 A THR 230 A THR 230 A GLN 232 A GLN 232 A GLU 188 A GLU 188 A SER 193 A SER 193 A ARG 201 A ARG 201 A PHE 211 A PHE 211 A TRP 243 A TRP 243 A ALA 252 A ALA 252 A MET 236 A MET 236 A PRO 237 A PRO 237 A GLN 225 A GLN 225 A GLU 226 A GLU 226 A VAL 216 A VAL 216 A ARG 222 A ARG 222 A SER 260 A SER 260 A HIS 265 A HIS 265 A ILE 273 A ILE 273 A TYR 276 A TYR 276 B LYS 6 B LYS 6 B SER 11 B SER 11 B ASN 21 B ASN 21 B PHE 30 B PHE 30 B PHE 61 B PHE 61 B PHE 69 B PHE 69 B SER 48 B SER 48 B GLN 50 B GLN 50 B LYS 6 B LYS 6 B SER 11 B SER 11 B ASN 21 B ASN 21 B PHE 30 B PHE 30 B PHE 61 B PHE 61 B PHE 69 B PHE 69 B SER 54 B SER 54 B PHE 55 B PHE 55 B GLU 44 B GLU 44 B LYS 45 B LYS 45 B ILE 35 B ILE 35 B LYS 41 B LYS 41 B TYR 77 B TYR 77 B HIS 83 B HIS 83 B ARG 90 B ARG 90 B LYS 93 B LYS 93 C ARG 48 C ARG 48 C PHE 49 C PHE 49 C LEU 35 C LEU 35 C TRP 40 C TRP 40 C THR 24 C THR 24 C LEU 32 C LEU 32 C PHE 10 C PHE 10 C PHE 18 C PHE 18 C LEU 94 C LEU 94 C GLU 103 C GLU 103 C GLU 111 C GLU 111 C PHE 118 C PHE 118 C ARG 121 C ARG 121 C GLN 127 C GLN 127 C SER 130 C SER 130 C SER 133 C SER 133 C GLU 188 C GLU 188 C SER 193 C SER 193 C LEU 202 C LEU 202 C PHE 211 C PHE 211 C TRP 243 C TRP 243 C VAL 251 C VAL 251 C THR 230 C THR 230 C GLN 232 C GLN 232 C GLU 188 C GLU 188 C SER 193 C SER 193 C LEU 202 C LEU 202 C PHE 211 C PHE 211 C TRP 243 C TRP 243 C VAL 251 C VAL 251 C MET 236 C MET 236 C PRO 237 C PRO 237 C GLN 225 C GLN 225 C GLU 226 C GLU 226 C ARG 217 C ARG 217 C ARG 222 C ARG 222 C LEU 259 C LEU 259 C LYS 264 C LYS 264 C ILE 273 C ILE 273 C TRP 277 C TRP 277 D LYS 6 D LYS 6 D SER 11 D SER 11 D ASN 21 D ASN 21 D PHE 30 D PHE 30 D PHE 61 D PHE 61 D PHE 69 D PHE 69 D SER 48 D SER 48 D GLN 50 D GLN 50 D LYS 6 D LYS 6 D SER 11 D SER 11 D ASN 21 D ASN 21 D PHE 30 D PHE 30 D PHE 61 D PHE 61 D PHE 69 D PHE 69 D SER 54 D SER 54 D PHE 55 D PHE 55 D GLU 44 D GLU 44 D LYS 45 D LYS 45 D GLU 36 D GLU 36 D LYS 41 D LYS 41 D TYR 77 D TYR 77 D LYS 82 D LYS 82 D ARG 90 D ARG 90 D LYS 93 D LYS 93 77 P 42