0.005933
0.000000
0.000000
-0.000000
0.005933
0.000000
0.000000
-0.000000
0.024082
0.000000
0.000000
0.000000
Wang, J.
Zajonc, D.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
168.553
168.553
41.525
C36 H69 N O14 S2
804.061
N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
N
3
N
C
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
C
N
9
N
C
N
10
N
C
N
11
N
C
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
C
N
16
R
C
N
17
N
O
N
18
S
C
N
19
N
C
N
20
N
O
N
21
R
C
N
22
N
O
N
23
R
C
N
24
N
O
N
25
S
C
N
26
N
O
N
27
N
S
N
28
N
O
N
29
N
O
N
30
N
O
N
31
S
C
N
32
N
O
N
33
R
C
N
34
N
C
N
35
N
O
N
36
N
S
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
N
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
C
N
45
N
C
N
46
N
C
N
47
N
C
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
C
N
52
N
C
N
53
N
C
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
N
N
144
N
C
N
145
N
N
N
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
R
C
N
197
S
C
N
198
S
C
N
199
S
C
N
200
R
C
N
201
N
C
N
202
N
O
N
203
N
O
N
204
N
O
N
205
N
O
N
206
N
O
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
R
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
S
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
N
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
Y
288
N
C
Y
289
N
N
Y
290
N
C
Y
291
N
C
Y
292
N
N
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
S
C
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
N
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
C
N
382
N
S
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
R
C
N
397
R
C
N
398
R
C
N
399
S
C
N
400
R
C
N
401
N
C
N
402
N
C
N
403
N
C
N
404
N
N
N
405
N
O
N
406
N
O
N
407
N
O
N
408
N
O
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
N
471
N
O
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
N
N
481
S
C
N
482
N
C
N
483
N
O
N
484
R
C
N
485
N
O
N
486
N
C
N
487
N
O
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
N
N
498
S
C
N
499
N
C
N
500
N
O
N
501
N
C
Y
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
N
Y
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
N
511
N
O
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
N
N
525
S
C
N
526
N
C
N
527
N
O
N
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
Y
533
N
C
Y
534
N
C
N
535
N
O
N
536
N
O
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
N
N
549
S
C
N
550
N
C
N
551
N
O
N
552
N
C
N
553
N
C
N
554
N
C
N
555
N
O
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
E
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
doub
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
Y
286
N
sing
Y
287
N
doub
Y
288
N
doub
N
289
N
sing
Y
290
N
sing
N
291
N
sing
Y
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
doub
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
doub
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
Y
493
N
doub
Y
494
N
sing
Y
495
N
sing
N
496
N
sing
Y
497
N
doub
Y
498
N
sing
Y
499
N
sing
N
500
N
sing
Y
501
N
sing
Y
502
N
doub
N
503
N
sing
Y
504
N
doub
N
505
N
sing
Y
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
doub
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
Y
521
N
doub
Y
522
N
sing
Y
523
N
sing
N
524
N
sing
Y
525
N
doub
N
526
N
sing
Y
527
N
doub
N
528
N
sing
Y
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
doub
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
US
Plos One
1932-6203
7
e47989
e47989
10.1371/journal.pone.0047989
23110152
Crystal Structures of Bovine CD1d Reveal Altered αGalCer Presentation and a Restricted A' Pocket Unable to Bind Long-Chain Glycolipids.
2012
10.2210/pdb4f7c/pdb
pdb_00004f7c
100
1
CCD
2011-11-19
ADSC QUANTUM 315r
single crystal, cylindrically bent, Si(220)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
5.0.3
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 5.0.3
32460.561
CD1D antigen, d polypeptide
UNP residues 129-405
2
man
polymer
11653.148
Beta-2-microglobulin
UNP residues 21-118
2
man
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
586.542
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
748.682
beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
804.061
N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
2
syn
non-polymer
18.015
water
29
nat
water
T cell surface glycoprotein CD1d antigen
Lactollin
no
no
SPAPQTPFSFQGLQISSFANRSWTRTDGLAWLGELQPYTWRNESDTIRFLKPWSRGTFSDQQWEQLQHTLLVYRSSFTRD
IWEFVEKLHVEYPLEIQIATGCELLPRNISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHW
LLHDIWPELVRGVLQTGKSELEKQVKPEAWLSSGPSPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEEPGTRQGDVMPNAD
STWYLRVTLDVAAGEVAGLSCQVKHSSLGDQDIILYWHHHHHH
SPAPQTPFSFQGLQISSFANRSWTRTDGLAWLGELQPYTWRNESDTIRFLKPWSRGTFSDQQWEQLQHTLLVYRSSFTRD
IWEFVEKLHVEYPLEIQIATGCELLPRNISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHW
LLHDIWPELVRGVLQTGKSELEKQVKPEAWLSSGPSPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEEPGTRQGDVMPNAD
STWYLRVTLDVAAGEVAGLSCQVKHSSLGDQDIILYWHHHHHH
A,C
polypeptide(L)
no
no
IQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSCR
VKHVTLEQPRIVKWDRDL
IQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSCR
VKHVTLEQPRIVKWDRDL
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bovine
fall armyworm
sample
CD1D
9913
Bos taurus
7108
Spodoptera frugiperda
SF9
baculovirus
pBACpHp10
bovine
fall armyworm
sample
B2M
9913
Bos taurus
7108
Spodoptera frugiperda
SF9
baculovirus
pBACpHp10
1
3.35
63.24
VAPOR DIFFUSION, SITTING DROP
20% PEG3350, 200 mM sodium formate, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ncs_dom_lim
repository
Initial release
Carbohydrate remediation
repository
Remediation
Atomic model
Data collection
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2012-11-14
2
0
2020-07-29
2
1
2023-09-13
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
A
NAG
500
n
E
NAG
1
A
NAG
501
n
E
NAG
2
A
NAG
502
n
F
NAG
1
A
NAG
503
n
F
NAG
2
A
MAN
504
n
F
BMA
3
C
NAG
500
n
G
NAG
1
C
NAG
501
n
G
NAG
2
C
MAN
502
n
G
BMA
3
C
NAG
503
n
H
NAG
1
C
NAG
504
n
H
NAG
2
C
MAN
505
n
H
BMA
3
C
MAN
506
n
H
BMA
4
DManpb
b-D-mannopyranose
b-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Structural basis of sulfatide presentation by mouse CD1d
RCSB
Y
RCSB
2012-05-15
REL
REL
oligosaccharide
oligosaccharide
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
3
PDB-CARE
LINUCS
DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
4
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1
4
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}
4
PDB-CARE
LINUCS
DManpb1-3DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
5
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2-2/a4-b1_b4-c1_c3-d1
5
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][b-D-Manp]{}}}}}
5
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
NAG
NAG
2
1
4
O1
HO4
sing
C1
O4
BMA
NAG
3
2
4
O1
HO4
sing
C1
O4
NAG
NAG
2
1
5
O1
HO4
sing
C1
O4
BMA
NAG
3
2
5
O1
HO4
sing
C1
O3
BMA
BMA
4
3
5
O1
HO3
sing
n
n
n
n
n
n
n
n
n
0SG
N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
HOH
water
3L9R
PDB ENTRY 3L9R
PDB
experimental model
CIS
1002
6
0SG
0SG
306
A
CIS
1002
6
0SG
0SG
308
C
HOH
4
7
HOH
HOH
401
A
HOH
44
7
HOH
HOH
402
A
HOH
59
7
HOH
HOH
403
A
HOH
121
7
HOH
HOH
404
A
HOH
132
7
HOH
HOH
405
A
HOH
133
7
HOH
HOH
406
A
HOH
135
7
HOH
HOH
407
A
HOH
136
7
HOH
HOH
408
A
HOH
137
7
HOH
HOH
409
A
HOH
138
7
HOH
HOH
410
A
HOH
3
7
HOH
HOH
101
B
HOH
21
7
HOH
HOH
102
B
HOH
34
7
HOH
HOH
103
B
HOH
53
7
HOH
HOH
104
B
HOH
85
7
HOH
HOH
105
B
HOH
139
7
HOH
HOH
106
B
HOH
36
7
HOH
HOH
401
C
HOH
42
7
HOH
HOH
402
C
HOH
51
7
HOH
HOH
403
C
HOH
129
7
HOH
HOH
404
C
HOH
8
7
HOH
HOH
101
D
HOH
11
7
HOH
HOH
102
D
HOH
16
7
HOH
HOH
103
D
HOH
19
7
HOH
HOH
104
D
HOH
41
7
HOH
HOH
105
D
HOH
50
7
HOH
HOH
106
D
HOH
67
7
HOH
HOH
107
D
HOH
106
7
HOH
HOH
108
D
HOH
114
7
HOH
HOH
109
D
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
PRO
7
n
7
PRO
7
A
PHE
8
n
8
PHE
8
A
SER
9
n
9
SER
9
A
PHE
10
n
10
PHE
10
A
GLN
11
n
11
GLN
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
GLN
14
n
14
GLN
14
A
ILE
15
n
15
ILE
15
A
SER
16
n
16
SER
16
A
SER
17
n
17
SER
17
A
PHE
18
n
18
PHE
18
A
ALA
19
n
19
ALA
19
A
ASN
20
n
20
ASN
20
A
ARG
21
n
21
ARG
21
A
SER
22
n
22
SER
22
A
TRP
23
n
23
TRP
23
A
THR
24
n
24
THR
24
A
ARG
25
n
25
ARG
25
A
THR
26
n
26
THR
26
A
ASP
27
n
27
ASP
27
A
GLY
28
n
28
GLY
28
A
LEU
29
n
29
LEU
29
A
ALA
30
n
30
ALA
30
A
TRP
31
n
31
TRP
31
A
LEU
32
n
32
LEU
32
A
GLY
33
n
33
GLY
33
A
GLU
34
n
34
GLU
34
A
LEU
35
n
35
LEU
35
A
GLN
36
n
36
GLN
36
A
PRO
37
n
37
PRO
37
A
TYR
38
n
38
TYR
38
A
THR
39
n
39
THR
39
A
TRP
40
n
40
TRP
40
A
ARG
41
n
41
ARG
41
A
ASN
42
n
42
ASN
42
A
GLU
43
n
43
GLU
43
A
SER
44
n
44
SER
44
A
ASP
45
n
45
ASP
45
A
THR
46
n
46
THR
46
A
ILE
47
n
47
ILE
47
A
ARG
48
n
48
ARG
48
A
PHE
49
n
49
PHE
49
A
LEU
50
n
50
LEU
50
A
LYS
51
n
51
LYS
51
A
PRO
52
n
52
PRO
52
A
TRP
53
n
53
TRP
53
A
SER
54
n
54
SER
54
A
ARG
55
n
55
ARG
55
A
GLY
56
n
56
GLY
56
A
THR
57
n
57
THR
57
A
PHE
58
n
58
PHE
58
A
SER
59
n
59
SER
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
GLN
62
n
62
GLN
62
A
TRP
63
n
63
TRP
63
A
GLU
64
n
64
GLU
64
A
GLN
65
n
65
GLN
65
A
LEU
66
n
66
LEU
66
A
GLN
67
n
67
GLN
67
A
HIS
68
n
68
HIS
68
A
THR
69
n
69
THR
69
A
LEU
70
n
70
LEU
70
A
LEU
71
n
71
LEU
71
A
VAL
72
n
72
VAL
72
A
TYR
73
n
73
TYR
73
A
ARG
74
n
74
ARG
74
A
SER
75
n
75
SER
75
A
SER
76
n
76
SER
76
A
PHE
77
n
77
PHE
77
A
THR
78
n
78
THR
78
A
ARG
79
n
79
ARG
79
A
ASP
80
n
80
ASP
80
A
ILE
81
n
81
ILE
81
A
TRP
82
n
82
TRP
82
A
GLU
83
n
83
GLU
83
A
PHE
84
n
84
PHE
84
A
VAL
85
n
85
VAL
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
LEU
88
n
88
LEU
88
A
HIS
89
n
89
HIS
89
A
VAL
90
n
90
VAL
90
A
GLU
91
n
91
GLU
91
A
TYR
92
n
92
TYR
92
A
PRO
93
n
93
PRO
93
A
LEU
94
n
94
LEU
94
A
GLU
95
n
95
GLU
95
A
ILE
96
n
96
ILE
96
A
GLN
97
n
97
GLN
97
A
ILE
98
n
98
ILE
98
A
ALA
99
n
99
ALA
99
A
THR
100
n
100
THR
100
A
GLY
101
n
101
GLY
101
A
CYS
102
n
102
CYS
102
A
GLU
103
n
103
GLU
103
A
LEU
104
n
104
LEU
104
A
LEU
105
n
105
LEU
105
A
n
106
106
A
n
107
107
A
n
108
108
A
n
109
109
A
SER
110
n
110
SER
110
A
GLU
111
n
111
GLU
111
A
SER
112
n
112
SER
112
A
PHE
113
n
113
PHE
113
A
LEU
114
n
114
LEU
114
A
ARG
115
n
115
ARG
115
A
ALA
116
n
116
ALA
116
A
ALA
117
n
117
ALA
117
A
PHE
118
n
118
PHE
118
A
GLN
119
n
119
GLN
119
A
GLY
120
n
120
GLY
120
A
ARG
121
n
121
ARG
121
A
ASP
122
n
122
ASP
122
A
VAL
123
n
123
VAL
123
A
LEU
124
n
124
LEU
124
A
SER
125
n
125
SER
125
A
PHE
126
n
126
PHE
126
A
GLN
127
n
127
GLN
127
A
GLY
128
n
128
GLY
128
A
MET
129
n
129
MET
129
A
SER
130
n
130
SER
130
A
TRP
131
n
131
TRP
131
A
VAL
132
n
132
VAL
132
A
SER
133
n
133
SER
133
A
ALA
134
n
134
ALA
134
A
PRO
135
n
135
PRO
135
A
ASP
136
n
136
ASP
136
A
ALA
137
n
137
ALA
137
A
PRO
138
n
138
PRO
138
A
PRO
139
n
139
PRO
139
A
PHE
140
n
140
PHE
140
A
ILE
141
n
141
ILE
141
A
GLN
142
n
142
GLN
142
A
GLU
143
n
143
GLU
143
A
VAL
144
n
144
VAL
144
A
ILE
145
n
145
ILE
145
A
LYS
146
n
146
LYS
146
A
VAL
147
n
147
VAL
147
A
LEU
148
n
148
LEU
148
A
ASN
149
n
149
ASN
149
A
GLN
150
n
150
GLN
150
A
ASN
151
n
151
ASN
151
A
GLN
152
n
152
GLN
152
A
GLY
153
n
153
GLY
153
A
THR
154
n
154
THR
154
A
LYS
155
n
155
LYS
155
A
GLU
156
n
156
GLU
156
A
THR
157
n
157
THR
157
A
VAL
158
n
158
VAL
158
A
HIS
159
n
159
HIS
159
A
TRP
160
n
160
TRP
160
A
LEU
161
n
161
LEU
161
A
LEU
162
n
162
LEU
162
A
HIS
163
n
163
HIS
163
A
ASP
164
n
164
ASP
164
A
ILE
165
n
165
ILE
165
A
TRP
166
n
166
TRP
166
A
PRO
167
n
167
PRO
167
A
GLU
168
n
168
GLU
168
A
LEU
169
n
169
LEU
169
A
VAL
170
n
170
VAL
170
A
ARG
171
n
171
ARG
171
A
GLY
172
n
172
GLY
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
GLN
175
n
175
GLN
175
A
THR
176
n
176
THR
176
A
GLY
177
n
177
GLY
177
A
LYS
178
n
178
LYS
178
A
SER
179
n
179
SER
179
A
GLU
180
n
180
GLU
180
A
LEU
181
n
181
LEU
181
A
GLU
182
n
182
GLU
182
A
LYS
183
n
183
LYS
183
A
GLN
184
n
184
GLN
184
A
VAL
185
n
185
VAL
185
A
LYS
186
n
186
LYS
186
A
PRO
187
n
187
PRO
187
A
GLU
188
n
188
GLU
188
A
ALA
189
n
189
ALA
189
A
TRP
190
n
190
TRP
190
A
LEU
191
n
191
LEU
191
A
SER
192
n
192
SER
192
A
SER
193
n
193
SER
193
A
GLY
194
n
194
GLY
194
A
PRO
195
n
195
PRO
195
A
SER
196
n
196
SER
196
A
PRO
197
n
197
PRO
197
A
GLY
198
n
198
GLY
198
A
PRO
199
n
199
PRO
199
A
GLY
200
n
200
GLY
200
A
ARG
201
n
201
ARG
201
A
LEU
202
n
202
LEU
202
A
LEU
203
n
203
LEU
203
A
LEU
204
n
204
LEU
204
A
VAL
205
n
205
VAL
205
A
CYS
206
n
206
CYS
206
A
HIS
207
n
207
HIS
207
A
VAL
208
n
208
VAL
208
A
SER
209
n
209
SER
209
A
GLY
210
n
210
GLY
210
A
PHE
211
n
211
PHE
211
A
TYR
212
n
212
TYR
212
A
PRO
213
n
213
PRO
213
A
LYS
214
n
214
LYS
214
A
PRO
215
n
215
PRO
215
A
VAL
216
n
216
VAL
216
A
ARG
217
n
217
ARG
217
A
VAL
218
n
218
VAL
218
A
MET
219
n
219
MET
219
A
TRP
220
n
220
TRP
220
A
MET
221
n
221
MET
221
A
ARG
222
n
222
ARG
222
A
GLY
223
n
223
GLY
223
A
GLU
224
n
224
GLU
224
A
GLN
225
n
225
GLN
225
A
GLU
226
n
226
GLU
226
A
GLU
227
n
227
GLU
227
A
PRO
228
n
228
PRO
228
A
GLY
229
n
229
GLY
229
A
THR
230
n
230
THR
230
A
ARG
231
n
231
ARG
231
A
GLN
232
n
232
GLN
232
A
GLY
233
n
233
GLY
233
A
ASP
234
n
234
ASP
234
A
VAL
235
n
235
VAL
235
A
MET
236
n
236
MET
236
A
PRO
237
n
237
PRO
237
A
ASN
238
n
238
ASN
238
A
ALA
239
n
239
ALA
239
A
ASP
240
n
240
ASP
240
A
SER
241
n
241
SER
241
A
THR
242
n
242
THR
242
A
TRP
243
n
243
TRP
243
A
TYR
244
n
244
TYR
244
A
LEU
245
n
245
LEU
245
A
ARG
246
n
246
ARG
246
A
VAL
247
n
247
VAL
247
A
THR
248
n
248
THR
248
A
LEU
249
n
249
LEU
249
A
ASP
250
n
250
ASP
250
A
VAL
251
n
251
VAL
251
A
ALA
252
n
252
ALA
252
A
ALA
253
n
253
ALA
253
A
GLY
254
n
254
GLY
254
A
GLU
255
n
255
GLU
255
A
VAL
256
n
256
VAL
256
A
ALA
257
n
257
ALA
257
A
GLY
258
n
258
GLY
258
A
LEU
259
n
259
LEU
259
A
SER
260
n
260
SER
260
A
CYS
261
n
261
CYS
261
A
GLN
262
n
262
GLN
262
A
VAL
263
n
263
VAL
263
A
LYS
264
n
264
LYS
264
A
HIS
265
n
265
HIS
265
A
SER
266
n
266
SER
266
A
SER
267
n
267
SER
267
A
LEU
268
n
268
LEU
268
A
GLY
269
n
269
GLY
269
A
ASP
270
n
270
ASP
270
A
GLN
271
n
271
GLN
271
A
ASP
272
n
272
ASP
272
A
ILE
273
n
273
ILE
273
A
ILE
274
n
274
ILE
274
A
LEU
275
n
275
LEU
275
A
TYR
276
n
276
TYR
276
A
TRP
277
n
277
TRP
277
A
HIS
278
n
278
HIS
278
A
HIS
279
n
279
HIS
279
A
n
280
280
A
n
281
281
A
n
282
282
A
n
283
283
A
ILE
1
n
1
ILE
1
B
GLN
2
n
2
GLN
2
B
ARG
3
n
3
ARG
3
B
PRO
4
n
4
PRO
4
B
PRO
5
n
5
PRO
5
B
LYS
6
n
6
LYS
6
B
ILE
7
n
7
ILE
7
B
GLN
8
n
8
GLN
8
B
VAL
9
n
9
VAL
9
B
TYR
10
n
10
TYR
10
B
SER
11
n
11
SER
11
B
ARG
12
n
12
ARG
12
B
HIS
13
n
13
HIS
13
B
PRO
14
n
14
PRO
14
B
PRO
15
n
15
PRO
15
B
GLU
16
n
16
GLU
16
B
ASP
17
n
17
ASP
17
B
GLY
18
n
18
GLY
18
B
LYS
19
n
19
LYS
19
B
PRO
20
n
20
PRO
20
B
ASN
21
n
21
ASN
21
B
TYR
22
n
22
TYR
22
B
LEU
23
n
23
LEU
23
B
ASN
24
n
24
ASN
24
B
CYS
25
n
25
CYS
25
B
TYR
26
n
26
TYR
26
B
VAL
27
n
27
VAL
27
B
TYR
28
n
28
TYR
28
B
GLY
29
n
29
GLY
29
B
PHE
30
n
30
PHE
30
B
HIS
31
n
31
HIS
31
B
PRO
32
n
32
PRO
32
B
PRO
33
n
33
PRO
33
B
GLN
34
n
34
GLN
34
B
ILE
35
n
35
ILE
35
B
GLU
36
n
36
GLU
36
B
ILE
37
n
37
ILE
37
B
ASP
38
n
38
ASP
38
B
LEU
39
n
39
LEU
39
B
LEU
40
n
40
LEU
40
B
LYS
41
n
41
LYS
41
B
ASN
42
n
42
ASN
42
B
GLY
43
n
43
GLY
43
B
GLU
44
n
44
GLU
44
B
LYS
45
n
45
LYS
45
B
ILE
46
n
46
ILE
46
B
LYS
47
n
47
LYS
47
B
SER
48
n
48
SER
48
B
GLU
49
n
49
GLU
49
B
GLN
50
n
50
GLN
50
B
SER
51
n
51
SER
51
B
ASP
52
n
52
ASP
52
B
LEU
53
n
53
LEU
53
B
SER
54
n
54
SER
54
B
PHE
55
n
55
PHE
55
B
SER
56
n
56
SER
56
B
LYS
57
n
57
LYS
57
B
ASP
58
n
58
ASP
58
B
TRP
59
n
59
TRP
59
B
SER
60
n
60
SER
60
B
PHE
61
n
61
PHE
61
B
TYR
62
n
62
TYR
62
B
LEU
63
n
63
LEU
63
B
LEU
64
n
64
LEU
64
B
SER
65
n
65
SER
65
B
HIS
66
n
66
HIS
66
B
ALA
67
n
67
ALA
67
B
GLU
68
n
68
GLU
68
B
PHE
69
n
69
PHE
69
B
THR
70
n
70
THR
70
B
PRO
71
n
71
PRO
71
B
ASN
72
n
72
ASN
72
B
SER
73
n
73
SER
73
B
LYS
74
n
74
LYS
74
B
ASP
75
n
75
ASP
75
B
GLN
76
n
76
GLN
76
B
TYR
77
n
77
TYR
77
B
SER
78
n
78
SER
78
B
CYS
79
n
79
CYS
79
B
ARG
80
n
80
ARG
80
B
VAL
81
n
81
VAL
81
B
LYS
82
n
82
LYS
82
B
HIS
83
n
83
HIS
83
B
VAL
84
n
84
VAL
84
B
THR
85
n
85
THR
85
B
LEU
86
n
86
LEU
86
B
GLU
87
n
87
GLU
87
B
GLN
88
n
88
GLN
88
B
PRO
89
n
89
PRO
89
B
ARG
90
n
90
ARG
90
B
ILE
91
n
91
ILE
91
B
VAL
92
n
92
VAL
92
B
LYS
93
n
93
LYS
93
B
TRP
94
n
94
TRP
94
B
ASP
95
n
95
ASP
95
B
ARG
96
n
96
ARG
96
B
ASP
97
n
97
ASP
97
B
n
98
98
B
n
1
1
C
n
2
2
C
n
3
3
C
n
4
4
C
n
5
5
C
n
6
6
C
n
7
7
C
PHE
8
n
8
PHE
8
C
SER
9
n
9
SER
9
C
PHE
10
n
10
PHE
10
C
GLN
11
n
11
GLN
11
C
GLY
12
n
12
GLY
12
C
LEU
13
n
13
LEU
13
C
GLN
14
n
14
GLN
14
C
ILE
15
n
15
ILE
15
C
SER
16
n
16
SER
16
C
SER
17
n
17
SER
17
C
PHE
18
n
18
PHE
18
C
ALA
19
n
19
ALA
19
C
ASN
20
n
20
ASN
20
C
ARG
21
n
21
ARG
21
C
SER
22
n
22
SER
22
C
TRP
23
n
23
TRP
23
C
THR
24
n
24
THR
24
C
ARG
25
n
25
ARG
25
C
THR
26
n
26
THR
26
C
ASP
27
n
27
ASP
27
C
GLY
28
n
28
GLY
28
C
LEU
29
n
29
LEU
29
C
ALA
30
n
30
ALA
30
C
TRP
31
n
31
TRP
31
C
LEU
32
n
32
LEU
32
C
GLY
33
n
33
GLY
33
C
GLU
34
n
34
GLU
34
C
LEU
35
n
35
LEU
35
C
GLN
36
n
36
GLN
36
C
PRO
37
n
37
PRO
37
C
TYR
38
n
38
TYR
38
C
THR
39
n
39
THR
39
C
TRP
40
n
40
TRP
40
C
ARG
41
n
41
ARG
41
C
ASN
42
n
42
ASN
42
C
GLU
43
n
43
GLU
43
C
SER
44
n
44
SER
44
C
ASP
45
n
45
ASP
45
C
THR
46
n
46
THR
46
C
ILE
47
n
47
ILE
47
C
ARG
48
n
48
ARG
48
C
PHE
49
n
49
PHE
49
C
LEU
50
n
50
LEU
50
C
LYS
51
n
51
LYS
51
C
PRO
52
n
52
PRO
52
C
TRP
53
n
53
TRP
53
C
SER
54
n
54
SER
54
C
ARG
55
n
55
ARG
55
C
GLY
56
n
56
GLY
56
C
THR
57
n
57
THR
57
C
PHE
58
n
58
PHE
58
C
SER
59
n
59
SER
59
C
ASP
60
n
60
ASP
60
C
GLN
61
n
61
GLN
61
C
GLN
62
n
62
GLN
62
C
TRP
63
n
63
TRP
63
C
GLU
64
n
64
GLU
64
C
GLN
65
n
65
GLN
65
C
LEU
66
n
66
LEU
66
C
GLN
67
n
67
GLN
67
C
HIS
68
n
68
HIS
68
C
THR
69
n
69
THR
69
C
LEU
70
n
70
LEU
70
C
LEU
71
n
71
LEU
71
C
VAL
72
n
72
VAL
72
C
TYR
73
n
73
TYR
73
C
ARG
74
n
74
ARG
74
C
SER
75
n
75
SER
75
C
SER
76
n
76
SER
76
C
PHE
77
n
77
PHE
77
C
THR
78
n
78
THR
78
C
ARG
79
n
79
ARG
79
C
ASP
80
n
80
ASP
80
C
ILE
81
n
81
ILE
81
C
TRP
82
n
82
TRP
82
C
GLU
83
n
83
GLU
83
C
PHE
84
n
84
PHE
84
C
VAL
85
n
85
VAL
85
C
GLU
86
n
86
GLU
86
C
LYS
87
n
87
LYS
87
C
LEU
88
n
88
LEU
88
C
HIS
89
n
89
HIS
89
C
VAL
90
n
90
VAL
90
C
GLU
91
n
91
GLU
91
C
TYR
92
n
92
TYR
92
C
PRO
93
n
93
PRO
93
C
LEU
94
n
94
LEU
94
C
GLU
95
n
95
GLU
95
C
ILE
96
n
96
ILE
96
C
GLN
97
n
97
GLN
97
C
ILE
98
n
98
ILE
98
C
ALA
99
n
99
ALA
99
C
THR
100
n
100
THR
100
C
GLY
101
n
101
GLY
101
C
CYS
102
n
102
CYS
102
C
GLU
103
n
103
GLU
103
C
LEU
104
n
104
LEU
104
C
LEU
105
n
105
LEU
105
C
n
106
106
C
n
107
107
C
n
108
108
C
n
109
109
C
SER
110
n
110
SER
110
C
GLU
111
n
111
GLU
111
C
SER
112
n
112
SER
112
C
PHE
113
n
113
PHE
113
C
LEU
114
n
114
LEU
114
C
ARG
115
n
115
ARG
115
C
ALA
116
n
116
ALA
116
C
ALA
117
n
117
ALA
117
C
PHE
118
n
118
PHE
118
C
GLN
119
n
119
GLN
119
C
GLY
120
n
120
GLY
120
C
ARG
121
n
121
ARG
121
C
ASP
122
n
122
ASP
122
C
VAL
123
n
123
VAL
123
C
LEU
124
n
124
LEU
124
C
SER
125
n
125
SER
125
C
PHE
126
n
126
PHE
126
C
GLN
127
n
127
GLN
127
C
GLY
128
n
128
GLY
128
C
MET
129
n
129
MET
129
C
SER
130
n
130
SER
130
C
TRP
131
n
131
TRP
131
C
VAL
132
n
132
VAL
132
C
SER
133
n
133
SER
133
C
ALA
134
n
134
ALA
134
C
PRO
135
n
135
PRO
135
C
ASP
136
n
136
ASP
136
C
ALA
137
n
137
ALA
137
C
PRO
138
n
138
PRO
138
C
PRO
139
n
139
PRO
139
C
PHE
140
n
140
PHE
140
C
ILE
141
n
141
ILE
141
C
GLN
142
n
142
GLN
142
C
GLU
143
n
143
GLU
143
C
VAL
144
n
144
VAL
144
C
ILE
145
n
145
ILE
145
C
LYS
146
n
146
LYS
146
C
VAL
147
n
147
VAL
147
C
LEU
148
n
148
LEU
148
C
ASN
149
n
149
ASN
149
C
GLN
150
n
150
GLN
150
C
ASN
151
n
151
ASN
151
C
GLN
152
n
152
GLN
152
C
GLY
153
n
153
GLY
153
C
THR
154
n
154
THR
154
C
LYS
155
n
155
LYS
155
C
GLU
156
n
156
GLU
156
C
THR
157
n
157
THR
157
C
VAL
158
n
158
VAL
158
C
HIS
159
n
159
HIS
159
C
TRP
160
n
160
TRP
160
C
LEU
161
n
161
LEU
161
C
LEU
162
n
162
LEU
162
C
HIS
163
n
163
HIS
163
C
ASP
164
n
164
ASP
164
C
ILE
165
n
165
ILE
165
C
TRP
166
n
166
TRP
166
C
PRO
167
n
167
PRO
167
C
GLU
168
n
168
GLU
168
C
LEU
169
n
169
LEU
169
C
VAL
170
n
170
VAL
170
C
ARG
171
n
171
ARG
171
C
GLY
172
n
172
GLY
172
C
VAL
173
n
173
VAL
173
C
LEU
174
n
174
LEU
174
C
GLN
175
n
175
GLN
175
C
THR
176
n
176
THR
176
C
GLY
177
n
177
GLY
177
C
LYS
178
n
178
LYS
178
C
SER
179
n
179
SER
179
C
GLU
180
n
180
GLU
180
C
LEU
181
n
181
LEU
181
C
GLU
182
n
182
GLU
182
C
LYS
183
n
183
LYS
183
C
GLN
184
n
184
GLN
184
C
VAL
185
n
185
VAL
185
C
LYS
186
n
186
LYS
186
C
PRO
187
n
187
PRO
187
C
GLU
188
n
188
GLU
188
C
ALA
189
n
189
ALA
189
C
TRP
190
n
190
TRP
190
C
LEU
191
n
191
LEU
191
C
SER
192
n
192
SER
192
C
SER
193
n
193
SER
193
C
GLY
194
n
194
GLY
194
C
PRO
195
n
195
PRO
195
C
SER
196
n
196
SER
196
C
PRO
197
n
197
PRO
197
C
GLY
198
n
198
GLY
198
C
PRO
199
n
199
PRO
199
C
GLY
200
n
200
GLY
200
C
ARG
201
n
201
ARG
201
C
LEU
202
n
202
LEU
202
C
LEU
203
n
203
LEU
203
C
LEU
204
n
204
LEU
204
C
VAL
205
n
205
VAL
205
C
CYS
206
n
206
CYS
206
C
HIS
207
n
207
HIS
207
C
VAL
208
n
208
VAL
208
C
SER
209
n
209
SER
209
C
GLY
210
n
210
GLY
210
C
PHE
211
n
211
PHE
211
C
TYR
212
n
212
TYR
212
C
PRO
213
n
213
PRO
213
C
LYS
214
n
214
LYS
214
C
PRO
215
n
215
PRO
215
C
VAL
216
n
216
VAL
216
C
ARG
217
n
217
ARG
217
C
VAL
218
n
218
VAL
218
C
MET
219
n
219
MET
219
C
TRP
220
n
220
TRP
220
C
MET
221
n
221
MET
221
C
ARG
222
n
222
ARG
222
C
GLY
223
n
223
GLY
223
C
GLU
224
n
224
GLU
224
C
GLN
225
n
225
GLN
225
C
GLU
226
n
226
GLU
226
C
GLU
227
n
227
GLU
227
C
PRO
228
n
228
PRO
228
C
GLY
229
n
229
GLY
229
C
THR
230
n
230
THR
230
C
ARG
231
n
231
ARG
231
C
GLN
232
n
232
GLN
232
C
GLY
233
n
233
GLY
233
C
ASP
234
n
234
ASP
234
C
VAL
235
n
235
VAL
235
C
MET
236
n
236
MET
236
C
PRO
237
n
237
PRO
237
C
ASN
238
n
238
ASN
238
C
ALA
239
n
239
ALA
239
C
ASP
240
n
240
ASP
240
C
SER
241
n
241
SER
241
C
THR
242
n
242
THR
242
C
TRP
243
n
243
TRP
243
C
TYR
244
n
244
TYR
244
C
LEU
245
n
245
LEU
245
C
ARG
246
n
246
ARG
246
C
VAL
247
n
247
VAL
247
C
THR
248
n
248
THR
248
C
LEU
249
n
249
LEU
249
C
ASP
250
n
250
ASP
250
C
VAL
251
n
251
VAL
251
C
n
252
252
C
n
253
253
C
n
254
254
C
n
255
255
C
n
256
256
C
ALA
257
n
257
ALA
257
C
GLY
258
n
258
GLY
258
C
LEU
259
n
259
LEU
259
C
SER
260
n
260
SER
260
C
CYS
261
n
261
CYS
261
C
GLN
262
n
262
GLN
262
C
VAL
263
n
263
VAL
263
C
LYS
264
n
264
LYS
264
C
HIS
265
n
265
HIS
265
C
SER
266
n
266
SER
266
C
SER
267
n
267
SER
267
C
LEU
268
n
268
LEU
268
C
GLY
269
n
269
GLY
269
C
ASP
270
n
270
ASP
270
C
GLN
271
n
271
GLN
271
C
ASP
272
n
272
ASP
272
C
ILE
273
n
273
ILE
273
C
ILE
274
n
274
ILE
274
C
LEU
275
n
275
LEU
275
C
TYR
276
n
276
TYR
276
C
TRP
277
n
277
TRP
277
C
HIS
278
n
278
HIS
278
C
HIS
279
n
279
HIS
279
C
n
280
280
C
n
281
281
C
n
282
282
C
n
283
283
C
ILE
1
n
1
ILE
1
D
GLN
2
n
2
GLN
2
D
ARG
3
n
3
ARG
3
D
PRO
4
n
4
PRO
4
D
PRO
5
n
5
PRO
5
D
LYS
6
n
6
LYS
6
D
ILE
7
n
7
ILE
7
D
GLN
8
n
8
GLN
8
D
VAL
9
n
9
VAL
9
D
TYR
10
n
10
TYR
10
D
SER
11
n
11
SER
11
D
ARG
12
n
12
ARG
12
D
HIS
13
n
13
HIS
13
D
PRO
14
n
14
PRO
14
D
PRO
15
n
15
PRO
15
D
GLU
16
n
16
GLU
16
D
ASP
17
n
17
ASP
17
D
GLY
18
n
18
GLY
18
D
LYS
19
n
19
LYS
19
D
PRO
20
n
20
PRO
20
D
ASN
21
n
21
ASN
21
D
TYR
22
n
22
TYR
22
D
LEU
23
n
23
LEU
23
D
ASN
24
n
24
ASN
24
D
CYS
25
n
25
CYS
25
D
TYR
26
n
26
TYR
26
D
VAL
27
n
27
VAL
27
D
TYR
28
n
28
TYR
28
D
GLY
29
n
29
GLY
29
D
PHE
30
n
30
PHE
30
D
HIS
31
n
31
HIS
31
D
PRO
32
n
32
PRO
32
D
PRO
33
n
33
PRO
33
D
GLN
34
n
34
GLN
34
D
ILE
35
n
35
ILE
35
D
GLU
36
n
36
GLU
36
D
ILE
37
n
37
ILE
37
D
ASP
38
n
38
ASP
38
D
LEU
39
n
39
LEU
39
D
LEU
40
n
40
LEU
40
D
LYS
41
n
41
LYS
41
D
ASN
42
n
42
ASN
42
D
GLY
43
n
43
GLY
43
D
GLU
44
n
44
GLU
44
D
LYS
45
n
45
LYS
45
D
ILE
46
n
46
ILE
46
D
LYS
47
n
47
LYS
47
D
SER
48
n
48
SER
48
D
GLU
49
n
49
GLU
49
D
GLN
50
n
50
GLN
50
D
SER
51
n
51
SER
51
D
ASP
52
n
52
ASP
52
D
LEU
53
n
53
LEU
53
D
SER
54
n
54
SER
54
D
PHE
55
n
55
PHE
55
D
SER
56
n
56
SER
56
D
LYS
57
n
57
LYS
57
D
ASP
58
n
58
ASP
58
D
TRP
59
n
59
TRP
59
D
SER
60
n
60
SER
60
D
PHE
61
n
61
PHE
61
D
TYR
62
n
62
TYR
62
D
LEU
63
n
63
LEU
63
D
LEU
64
n
64
LEU
64
D
SER
65
n
65
SER
65
D
HIS
66
n
66
HIS
66
D
ALA
67
n
67
ALA
67
D
GLU
68
n
68
GLU
68
D
PHE
69
n
69
PHE
69
D
THR
70
n
70
THR
70
D
PRO
71
n
71
PRO
71
D
ASN
72
n
72
ASN
72
D
SER
73
n
73
SER
73
D
LYS
74
n
74
LYS
74
D
ASP
75
n
75
ASP
75
D
GLN
76
n
76
GLN
76
D
TYR
77
n
77
TYR
77
D
SER
78
n
78
SER
78
D
CYS
79
n
79
CYS
79
D
ARG
80
n
80
ARG
80
D
VAL
81
n
81
VAL
81
D
LYS
82
n
82
LYS
82
D
HIS
83
n
83
HIS
83
D
VAL
84
n
84
VAL
84
D
THR
85
n
85
THR
85
D
LEU
86
n
86
LEU
86
D
GLU
87
n
87
GLU
87
D
GLN
88
n
88
GLN
88
D
PRO
89
n
89
PRO
89
D
ARG
90
n
90
ARG
90
D
ILE
91
n
91
ILE
91
D
VAL
92
n
92
VAL
92
D
LYS
93
n
93
LYS
93
D
TRP
94
n
94
TRP
94
D
ASP
95
n
95
ASP
95
D
ARG
96
n
96
ARG
96
D
ASP
97
n
97
ASP
97
D
n
98
98
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
3750
-1
19300
4060
4
19290
A
ASN
42
GLYCOSYLATION SITE
A
ASN
42
ASN
C
ASN
42
GLYCOSYLATION SITE
C
ASN
42
ASN
A
ASN
20
GLYCOSYLATION SITE
A
ASN
20
ASN
C
ASN
20
GLYCOSYLATION SITE
C
ASN
20
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
48
A
O
ARG
48
A
N
THR
39
A
N
THR
39
A
O
LEU
35
A
O
LEU
35
A
N
LEU
32
A
N
LEU
32
A
O
LEU
29
A
O
LEU
29
A
N
LEU
13
A
N
LEU
13
A
N
SER
16
A
N
SER
16
A
O
ILE
96
A
O
ILE
96
A
N
ALA
99
A
N
ALA
99
A
O
ARG
115
A
O
ARG
115
A
N
ALA
116
A
N
ALA
116
A
O
VAL
123
A
O
VAL
123
A
N
GLN
127
A
N
GLN
127
A
O
SER
130
A
O
SER
130
A
N
TRP
190
A
N
TRP
190
A
O
HIS
207
A
O
HIS
207
A
N
LEU
202
A
N
LEU
202
A
O
VAL
251
A
O
VAL
251
A
O
THR
248
A
O
THR
248
A
N
ARG
231
A
N
ARG
231
A
N
TRP
190
A
N
TRP
190
A
O
HIS
207
A
O
HIS
207
A
N
LEU
202
A
N
LEU
202
A
O
VAL
251
A
O
VAL
251
A
O
TYR
244
A
O
TYR
244
A
N
MET
236
A
N
MET
236
A
O
GLN
225
A
O
GLN
225
A
N
ARG
222
A
N
ARG
222
A
N
ARG
217
A
N
ARG
217
A
O
LYS
264
A
O
LYS
264
A
N
VAL
263
A
N
VAL
263
A
O
ILE
273
A
O
ILE
273
B
N
TYR
10
B
N
TYR
10
B
O
ASN
24
B
O
ASN
24
B
N
CYS
25
B
N
CYS
25
B
O
SER
65
B
O
SER
65
B
O
HIS
66
B
O
HIS
66
B
N
GLU
49
B
N
GLU
49
B
N
TYR
10
B
N
TYR
10
B
O
ASN
24
B
O
ASN
24
B
N
CYS
25
B
N
CYS
25
B
O
SER
65
B
O
SER
65
B
O
TYR
62
B
O
TYR
62
B
N
SER
54
B
N
SER
54
B
O
GLU
44
B
O
GLU
44
B
N
LYS
41
B
N
LYS
41
B
N
ASP
38
B
N
ASP
38
B
O
ARG
80
B
O
ARG
80
B
N
CYS
79
B
N
CYS
79
B
O
VAL
92
B
O
VAL
92
C
O
ARG
48
C
O
ARG
48
C
N
THR
39
C
N
THR
39
C
O
LEU
35
C
O
LEU
35
C
N
LEU
32
C
N
LEU
32
C
O
LEU
29
C
O
LEU
29
C
N
LEU
13
C
N
LEU
13
C
N
SER
16
C
N
SER
16
C
O
ILE
96
C
O
ILE
96
C
N
ALA
99
C
N
ALA
99
C
O
ARG
115
C
O
ARG
115
C
N
ALA
116
C
N
ALA
116
C
O
VAL
123
C
O
VAL
123
C
N
GLN
127
C
N
GLN
127
C
O
SER
130
C
O
SER
130
C
N
TRP
190
C
N
TRP
190
C
O
HIS
207
C
O
HIS
207
C
N
LEU
202
C
N
LEU
202
C
O
VAL
251
C
O
VAL
251
C
O
THR
248
C
O
THR
248
C
N
ARG
231
C
N
ARG
231
C
N
TRP
190
C
N
TRP
190
C
O
HIS
207
C
O
HIS
207
C
N
LEU
202
C
N
LEU
202
C
O
VAL
251
C
O
VAL
251
C
O
TYR
244
C
O
TYR
244
C
N
MET
236
C
N
MET
236
C
O
GLN
225
C
O
GLN
225
C
N
ARG
222
C
N
ARG
222
C
N
ARG
217
C
N
ARG
217
C
O
LYS
264
C
O
LYS
264
C
N
VAL
263
C
N
VAL
263
C
O
ILE
273
C
O
ILE
273
D
N
TYR
10
D
N
TYR
10
D
O
ASN
24
D
O
ASN
24
D
N
CYS
25
D
N
CYS
25
D
O
SER
65
D
O
SER
65
D
O
HIS
66
D
O
HIS
66
D
N
GLU
49
D
N
GLU
49
D
N
TYR
10
D
N
TYR
10
D
O
ASN
24
D
O
ASN
24
D
N
CYS
25
D
N
CYS
25
D
O
SER
65
D
O
SER
65
D
O
TYR
62
D
O
TYR
62
D
N
SER
54
D
N
SER
54
D
O
GLU
44
D
O
GLU
44
D
N
LYS
41
D
N
LYS
41
D
N
LEU
40
D
N
LEU
40
D
O
SER
78
D
O
SER
78
D
N
CYS
79
D
N
CYS
79
D
O
VAL
92
D
O
VAL
92
1
A
CG
GLN
225
A
CG
GLN
225
1
Y
1
A
CD
GLN
225
A
CD
GLN
225
1
Y
1
A
OE1
GLN
225
A
OE1
GLN
225
1
Y
1
A
NE2
GLN
225
A
NE2
GLN
225
1
Y
1
B
CG
GLU
87
B
CG
GLU
87
1
Y
1
B
CD
GLU
87
B
CD
GLU
87
1
Y
1
B
OE1
GLU
87
B
OE1
GLU
87
1
Y
1
B
OE2
GLU
87
B
OE2
GLU
87
1
Y
1
C
CG
GLN
61
C
CG
GLN
61
1
Y
1
C
CD
GLN
61
C
CD
GLN
61
1
Y
1
C
OE1
GLN
61
C
OE1
GLN
61
1
Y
1
C
NE2
GLN
61
C
NE2
GLN
61
1
Y
1
C
CG
GLU
64
C
CG
GLU
64
1
Y
1
C
CD
GLU
64
C
CD
GLU
64
1
Y
1
C
OE1
GLU
64
C
OE1
GLU
64
1
Y
1
C
OE2
GLU
64
C
OE2
GLU
64
1
Y
1
C
CG
GLN
225
C
CG
GLN
225
1
Y
1
C
CD
GLN
225
C
CD
GLN
225
1
Y
1
C
OE1
GLN
225
C
OE1
GLN
225
1
Y
1
C
NE2
GLN
225
C
NE2
GLN
225
1
Y
1
D
CG
LYS
19
D
CG
LYS
19
1
Y
1
D
CD
LYS
19
D
CD
LYS
19
1
Y
1
D
CE
LYS
19
D
CE
LYS
19
1
Y
1
D
NZ
LYS
19
D
NZ
LYS
19
1
Y
1
D
CG
GLU
87
D
CG
GLU
87
1
Y
1
D
CD
GLU
87
D
CD
GLU
87
1
Y
1
D
OE1
GLU
87
D
OE1
GLU
87
1
Y
1
D
OE2
GLU
87
D
OE2
GLU
87
1
Y
1
A
SER
1
A
SER
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
ALA
3
A
ALA
3
1
Y
1
A
PRO
4
A
PRO
4
1
Y
1
A
GLN
5
A
GLN
5
1
Y
1
A
THR
6
A
THR
6
1
Y
1
A
PRO
106
A
PRO
106
1
Y
1
A
ARG
107
A
ARG
107
1
Y
1
A
ASN
108
A
ASN
108
1
Y
1
A
ILE
109
A
ILE
109
1
Y
1
A
HIS
280
A
HIS
280
1
Y
1
A
HIS
281
A
HIS
281
1
Y
1
A
HIS
282
A
HIS
282
1
Y
1
A
HIS
283
A
HIS
283
1
Y
1
B
LEU
98
B
LEU
98
1
Y
1
C
SER
1
C
SER
1
1
Y
1
C
PRO
2
C
PRO
2
1
Y
1
C
ALA
3
C
ALA
3
1
Y
1
C
PRO
4
C
PRO
4
1
Y
1
C
GLN
5
C
GLN
5
1
Y
1
C
THR
6
C
THR
6
1
Y
1
C
PRO
7
C
PRO
7
1
Y
1
C
PRO
106
C
PRO
106
1
Y
1
C
ARG
107
C
ARG
107
1
Y
1
C
ASN
108
C
ASN
108
1
Y
1
C
ILE
109
C
ILE
109
1
Y
1
C
ALA
252
C
ALA
252
1
Y
1
C
ALA
253
C
ALA
253
1
Y
1
C
GLY
254
C
GLY
254
1
Y
1
C
GLU
255
C
GLU
255
1
Y
1
C
VAL
256
C
VAL
256
1
Y
1
C
HIS
280
C
HIS
280
1
Y
1
C
HIS
281
C
HIS
281
1
Y
1
C
HIS
282
C
HIS
282
1
Y
1
C
HIS
283
C
HIS
283
1
Y
1
D
LEU
98
D
LEU
98
1
Y
1
A
A
CE2
CD2
TRP
TRP
82
82
0.084
0.012
1.409
1.493
N
1
C
C
CE2
CD2
TRP
TRP
82
82
0.086
0.012
1.409
1.495
N
1
C
C
CG
CD2
HIS
HIS
279
279
0.057
0.009
1.354
1.411
N
1
A
HIS
89
38.94
61.66
1
A
ASN
149
-68.81
0.08
1
A
PRO
213
-68.41
-165.74
1
A
HIS
278
-97.10
-78.11
1
B
LYS
47
-59.53
109.21
1
C
VAL
123
-130.90
-45.08
1
C
PRO
213
-68.96
-169.87
1
C
SER
266
-38.96
-32.52
1
D
ASP
17
-38.52
126.21
125.660
46.0834
18.800
-0.0000
0.0000
0.0000
-0.0000
0.0000
0.0100
0.9150
0.7980
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
U VALUES : REFINED INDIVIDUALLY
0.2909
0.2220
0.2247
0.2247
2.864
46.748
1112
27287
4.1
98.48
1.000
1.000
17.1050
0.3010
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.3000
0.0880
0.8000
0.8000
1.2000
PDB ENTRY 3L9R
MAXIMUM LIKELIHOOD
MASK
2.864
46.748
29
6216
262
0
5925
0.013
0.022
6385
1.523
1.980
8691
6.557
5.000
719
33.426
23.645
299
18.736
15.000
999
21.339
15.000
40
0.089
0.200
940
0.006
0.021
4794
1
A
1
2086
X-RAY DIFFRACTION
TIGHT POSITIONAL
0.050
0.050
1
A
1
2086
X-RAY DIFFRACTION
TIGHT THERMAL
4.710
0.500
1
B
2
799
X-RAY DIFFRACTION
TIGHT POSITIONAL
0.040
0.050
1
B
2
799
X-RAY DIFFRACTION
TIGHT THERMAL
2.640
0.500
0.3530
0.2650
2.938
71
1796
1867
20
90.06
72
2.864
168.553
4F7C
27330
27330
0
0
0.114
1
17.9
3.9
99.3
0.586
2.864
3.0
3
2683
1
3.9
98.4
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0104
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
Crystal structure of bovine CD1d with bound C12-di-sulfatide
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
7
N
N
7
N
N
A
SER
59
A
SER
59
HELX_P
A
HIS
89
A
HIS
89
1
1
31
A
PHE
140
A
PHE
140
HELX_P
A
ASN
149
A
ASN
149
1
2
10
A
ASN
151
A
ASN
151
HELX_P
A
ASP
164
A
ASP
164
1
3
14
A
ASP
164
A
ASP
164
HELX_P
A
GLY
177
A
GLY
177
1
4
14
A
GLY
177
A
GLY
177
HELX_P
A
GLU
182
A
GLU
182
1
5
6
A
SER
267
A
SER
267
HELX_P
A
GLY
269
A
GLY
269
5
6
3
C
SER
59
C
SER
59
HELX_P
C
HIS
89
C
HIS
89
1
7
31
C
PHE
140
C
PHE
140
HELX_P
C
ASN
149
C
ASN
149
1
8
10
C
ASN
151
C
ASN
151
HELX_P
C
ASP
164
C
ASP
164
1
9
14
C
ASP
164
C
ASP
164
HELX_P
C
GLY
177
C
GLY
177
1
10
14
C
GLY
177
C
GLY
177
HELX_P
C
GLU
182
C
GLU
182
1
11
6
C
HIS
265
C
HIS
265
HELX_P
C
GLY
269
C
GLY
269
5
12
5
disulf
2.082
A
CYS
206
A
SG
CYS
206
1_555
A
CYS
261
A
SG
CYS
261
1_555
disulf
2.060
B
CYS
25
B
SG
CYS
25
1_555
B
CYS
79
B
SG
CYS
79
1_555
disulf
2.069
C
CYS
206
C
SG
CYS
206
1_555
C
CYS
261
C
SG
CYS
261
1_555
disulf
2.059
D
CYS
25
D
SG
CYS
25
1_555
D
CYS
79
D
SG
CYS
79
1_555
covale
1.449
one
N-Glycosylation
A
ASN
20
A
ND2
ASN
20
1_555
E
NAG
1
E
C1
NAG
1_555
covale
1.434
one
N-Glycosylation
A
ASN
42
A
ND2
ASN
42
1_555
F
NAG
1
F
C1
NAG
1_555
covale
1.450
one
N-Glycosylation
C
ASN
20
C
ND2
ASN
20
1_555
G
NAG
1
G
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
C
ASN
42
C
ND2
ASN
42
1_555
H
NAG
1
H
C1
NAG
1_555
covale
1.435
both
E
NAG
1
E
O4
NAG
1_555
E
NAG
2
E
C1
NAG
1_555
covale
1.436
both
F
NAG
1
F
O4
NAG
1_555
F
NAG
2
F
C1
NAG
1_555
covale
1.453
both
F
NAG
2
F
O4
NAG
1_555
F
BMA
3
F
C1
BMA
1_555
covale
1.444
both
G
NAG
1
G
O4
NAG
1_555
G
NAG
2
G
C1
NAG
1_555
covale
1.460
both
G
NAG
2
G
O4
NAG
1_555
G
BMA
3
G
C1
BMA
1_555
covale
1.444
both
H
NAG
1
H
O4
NAG
1_555
H
NAG
2
H
C1
NAG
1_555
covale
1.444
both
H
NAG
2
H
O4
NAG
1_555
H
BMA
3
H
C1
BMA
1_555
covale
1.445
both
H
BMA
3
H
O3
BMA
1_555
H
BMA
4
H
C1
BMA
1_555
IMMUNE SYSTEM
protein-glycolipid complex, MHC-fold, Ig-fold, antigen presentation, TCR, membrane, IMMUNE SYSTEM
A
TYR
92
A
TYR
92
1
A
PRO
93
A
PRO
93
-6.14
A
TYR
212
A
TYR
212
1
A
PRO
213
A
PRO
213
-0.88
B
HIS
31
B
HIS
31
1
B
PRO
32
B
PRO
32
4.66
C
TYR
92
C
TYR
92
1
C
PRO
93
C
PRO
93
-5.86
C
TYR
212
C
TYR
212
1
C
PRO
213
C
PRO
213
-2.58
D
HIS
31
D
HIS
31
1
D
PRO
32
D
PRO
32
2.29
A
C
B
D
A
SER
9
A
SER
9
A
TYR
276
A
TYR
276
1
C
SER
9
C
SER
9
C
TYR
276
C
TYR
276
1
B
ILE
1
B
ILE
1
B
ARG
96
B
ARG
96
1
D
ILE
1
D
ILE
1
D
ARG
96
D
ARG
96
1
A1L565_BOVIN
UNP
1
129
A1L565
SPAPQTPFSFQGLQISSFANRSWTRTDGLAWLGELQPYTWRNESDTIRFLKPWSRGTFSDQQWEQLQHTLLVYRSSFTRD
IWEFVEKLHVEYPLEIQIATGCELLPRNISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHW
LLHDIWPELVRGVLQTGKSELEKQVKPEAWLSSGPSPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEEPGTRQGDVMPNAD
STWYLRVTLDVAAGEVAGLSCQVKHSSLGDQDIILYW
B2MG_BOVIN
UNP
2
21
P01888
IQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSCR
VKHVTLEQPRIVKWDRDL
129
405
4F7C
1
277
A1L565
A
1
1
277
21
118
4F7C
1
98
P01888
B
2
1
98
129
405
4F7C
1
277
A1L565
C
1
1
277
21
118
4F7C
1
98
P01888
D
2
1
98
1
expression tag
HIS
278
4F7C
A
A1L565
UNP
278
1
expression tag
HIS
279
4F7C
A
A1L565
UNP
279
1
expression tag
HIS
280
4F7C
A
A1L565
UNP
280
1
expression tag
HIS
281
4F7C
A
A1L565
UNP
281
1
expression tag
HIS
282
4F7C
A
A1L565
UNP
282
1
expression tag
HIS
283
4F7C
A
A1L565
UNP
283
3
expression tag
HIS
278
4F7C
C
A1L565
UNP
278
3
expression tag
HIS
279
4F7C
C
A1L565
UNP
279
3
expression tag
HIS
280
4F7C
C
A1L565
UNP
280
3
expression tag
HIS
281
4F7C
C
A1L565
UNP
281
3
expression tag
HIS
282
4F7C
C
A1L565
UNP
282
3
expression tag
HIS
283
4F7C
C
A1L565
UNP
283
8
4
4
4
4
4
4
8
4
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
48
A
ARG
48
A
PHE
49
A
PHE
49
A
LEU
35
A
LEU
35
A
TRP
40
A
TRP
40
A
THR
24
A
THR
24
A
LEU
32
A
LEU
32
A
PHE
10
A
PHE
10
A
PHE
18
A
PHE
18
A
LEU
94
A
LEU
94
A
GLU
103
A
GLU
103
A
GLU
111
A
GLU
111
A
PHE
118
A
PHE
118
A
ARG
121
A
ARG
121
A
GLN
127
A
GLN
127
A
SER
130
A
SER
130
A
SER
133
A
SER
133
A
GLU
188
A
GLU
188
A
SER
193
A
SER
193
A
ARG
201
A
ARG
201
A
PHE
211
A
PHE
211
A
TRP
243
A
TRP
243
A
ALA
252
A
ALA
252
A
THR
230
A
THR
230
A
GLN
232
A
GLN
232
A
GLU
188
A
GLU
188
A
SER
193
A
SER
193
A
ARG
201
A
ARG
201
A
PHE
211
A
PHE
211
A
TRP
243
A
TRP
243
A
ALA
252
A
ALA
252
A
MET
236
A
MET
236
A
PRO
237
A
PRO
237
A
GLN
225
A
GLN
225
A
GLU
226
A
GLU
226
A
VAL
216
A
VAL
216
A
ARG
222
A
ARG
222
A
SER
260
A
SER
260
A
HIS
265
A
HIS
265
A
ILE
273
A
ILE
273
A
TYR
276
A
TYR
276
B
LYS
6
B
LYS
6
B
SER
11
B
SER
11
B
ASN
21
B
ASN
21
B
PHE
30
B
PHE
30
B
PHE
61
B
PHE
61
B
PHE
69
B
PHE
69
B
SER
48
B
SER
48
B
GLN
50
B
GLN
50
B
LYS
6
B
LYS
6
B
SER
11
B
SER
11
B
ASN
21
B
ASN
21
B
PHE
30
B
PHE
30
B
PHE
61
B
PHE
61
B
PHE
69
B
PHE
69
B
SER
54
B
SER
54
B
PHE
55
B
PHE
55
B
GLU
44
B
GLU
44
B
LYS
45
B
LYS
45
B
ILE
35
B
ILE
35
B
LYS
41
B
LYS
41
B
TYR
77
B
TYR
77
B
HIS
83
B
HIS
83
B
ARG
90
B
ARG
90
B
LYS
93
B
LYS
93
C
ARG
48
C
ARG
48
C
PHE
49
C
PHE
49
C
LEU
35
C
LEU
35
C
TRP
40
C
TRP
40
C
THR
24
C
THR
24
C
LEU
32
C
LEU
32
C
PHE
10
C
PHE
10
C
PHE
18
C
PHE
18
C
LEU
94
C
LEU
94
C
GLU
103
C
GLU
103
C
GLU
111
C
GLU
111
C
PHE
118
C
PHE
118
C
ARG
121
C
ARG
121
C
GLN
127
C
GLN
127
C
SER
130
C
SER
130
C
SER
133
C
SER
133
C
GLU
188
C
GLU
188
C
SER
193
C
SER
193
C
LEU
202
C
LEU
202
C
PHE
211
C
PHE
211
C
TRP
243
C
TRP
243
C
VAL
251
C
VAL
251
C
THR
230
C
THR
230
C
GLN
232
C
GLN
232
C
GLU
188
C
GLU
188
C
SER
193
C
SER
193
C
LEU
202
C
LEU
202
C
PHE
211
C
PHE
211
C
TRP
243
C
TRP
243
C
VAL
251
C
VAL
251
C
MET
236
C
MET
236
C
PRO
237
C
PRO
237
C
GLN
225
C
GLN
225
C
GLU
226
C
GLU
226
C
ARG
217
C
ARG
217
C
ARG
222
C
ARG
222
C
LEU
259
C
LEU
259
C
LYS
264
C
LYS
264
C
ILE
273
C
ILE
273
C
TRP
277
C
TRP
277
D
LYS
6
D
LYS
6
D
SER
11
D
SER
11
D
ASN
21
D
ASN
21
D
PHE
30
D
PHE
30
D
PHE
61
D
PHE
61
D
PHE
69
D
PHE
69
D
SER
48
D
SER
48
D
GLN
50
D
GLN
50
D
LYS
6
D
LYS
6
D
SER
11
D
SER
11
D
ASN
21
D
ASN
21
D
PHE
30
D
PHE
30
D
PHE
61
D
PHE
61
D
PHE
69
D
PHE
69
D
SER
54
D
SER
54
D
PHE
55
D
PHE
55
D
GLU
44
D
GLU
44
D
LYS
45
D
LYS
45
D
GLU
36
D
GLU
36
D
LYS
41
D
LYS
41
D
TYR
77
D
TYR
77
D
LYS
82
D
LYS
82
D
ARG
90
D
ARG
90
D
LYS
93
D
LYS
93
77
P 42