0.021552 -0.000038 0.002494 -0.000000 0.019608 -0.000004 0.000000 -0.000000 0.013494 0.000000 0.000000 0.000000 Martin, R.N.A. McGeehan, J.E. Kneale, G.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 96.600 90 46.400 51.000 74.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N NA N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N O N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N S N 275 N O N 276 N O N 277 N O N 278 N O N 279 N N N 280 S C N 281 N C N 282 N O N 283 R C N 284 N O N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C Y 305 N C Y 306 N C N 307 N O N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C N 325 N C N 326 N C N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing Y 291 N doub Y 292 N sing Y 293 N sing N 294 N sing Y 295 N doub N 296 N sing Y 297 N doub N 298 N sing Y 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing US Plos One 1932-6203 9 e98365 e98365 10.1371/journal.pone.0098365 24887147 Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I. 2014 UK Nucleic Acids Res. NARHAD 0389 0305-1048 36 4778 4787 10.1093/nar/gkn448 18644840 Structural analysis of the genetic switch that regulates the expression of restriction-modification genes. 2008 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 65 900 905 10.1107/S0907444909020514 19690367 Structure of the restriction-modification controller protein C.Esp1396I. 2009 UK Nucleic Acids Res. NARHAD 0389 0305-1048 40 4158 4167 10.1093/nar/gkr1250 22210861 Recognition of dual symmetry by the controller protein C.Esp1396I based on the structure of the transcriptional activation complex. 2012 10.2210/pdb4f8d/pdb pdb_00004f8d 100 1 CCD 2011-07-02 ADSC QUANTUM 315r Si(111) double crystal monochromator SINGLE WAVELENGTH M x-ray 1 0.979494 1.0 I02 Diamond 0.979494 SYNCHROTRON DIAMOND BEAMLINE I02 9435.059 Regulatory protein R46A 2 man polymer 96.063 SULFATE ION 4 syn non-polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 125 nat water no no GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIKEILK HD GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIKEILK HD A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n RFL1396 sample esp1396IC 211595 Enterobacter sp. 469008 Escherichia coli BL21(DE3)pLysS Plasmid pET28 1 2.32 47.06 VAPOR DIFFUSION, SITTING DROP 7.8 200mM Sodium Sulphate, 20% PEG 3350, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2013-04-10 1 1 2014-06-18 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id C.Esp1396I DNA bound tetramer C.Esp1396I DNA bound dimer R35A mutant of C.Esp1396I Native C.Esp1396I RCSB Y RCSB 2012-05-17 REL REL SO4 SULFATE ION NA SODIUM ION HOH water SO4 4 2 SO4 SO4 101 A NA 2 3 NA NA 102 A SO4 2 2 SO4 SO4 101 B SO4 3 2 SO4 SO4 102 B SO4 5 2 SO4 SO4 103 B NA 1 3 NA NA 104 B HOH 3 4 HOH HOH 201 A HOH 4 4 HOH HOH 202 A HOH 5 4 HOH HOH 203 A HOH 13 4 HOH HOH 204 A HOH 16 4 HOH HOH 205 A HOH 17 4 HOH HOH 206 A HOH 19 4 HOH HOH 207 A HOH 20 4 HOH HOH 208 A HOH 22 4 HOH HOH 209 A HOH 23 4 HOH HOH 210 A HOH 24 4 HOH HOH 211 A HOH 25 4 HOH HOH 212 A HOH 26 4 HOH HOH 213 A HOH 27 4 HOH HOH 214 A HOH 28 4 HOH HOH 215 A HOH 31 4 HOH HOH 216 A HOH 34 4 HOH HOH 217 A HOH 37 4 HOH HOH 218 A HOH 38 4 HOH HOH 219 A HOH 43 4 HOH HOH 220 A HOH 46 4 HOH HOH 221 A HOH 47 4 HOH HOH 222 A HOH 49 4 HOH HOH 223 A HOH 52 4 HOH HOH 224 A HOH 53 4 HOH HOH 225 A HOH 54 4 HOH HOH 226 A HOH 55 4 HOH HOH 227 A HOH 56 4 HOH HOH 228 A HOH 61 4 HOH HOH 229 A HOH 62 4 HOH HOH 230 A HOH 63 4 HOH HOH 231 A HOH 65 4 HOH HOH 232 A HOH 66 4 HOH HOH 233 A HOH 69 4 HOH HOH 234 A HOH 70 4 HOH HOH 235 A HOH 73 4 HOH HOH 236 A HOH 75 4 HOH HOH 237 A HOH 76 4 HOH HOH 238 A HOH 77 4 HOH HOH 239 A HOH 79 4 HOH HOH 240 A HOH 82 4 HOH HOH 241 A HOH 83 4 HOH HOH 242 A HOH 84 4 HOH HOH 243 A HOH 89 4 HOH HOH 244 A HOH 92 4 HOH HOH 245 A HOH 95 4 HOH HOH 246 A HOH 96 4 HOH HOH 247 A HOH 97 4 HOH HOH 248 A HOH 98 4 HOH HOH 249 A HOH 103 4 HOH HOH 250 A HOH 104 4 HOH HOH 251 A HOH 112 4 HOH HOH 252 A HOH 116 4 HOH HOH 253 A HOH 117 4 HOH HOH 254 A HOH 119 4 HOH HOH 255 A HOH 122 4 HOH HOH 256 A HOH 123 4 HOH HOH 257 A HOH 125 4 HOH HOH 258 A HOH 126 4 HOH HOH 259 A HOH 1 4 HOH HOH 201 B HOH 2 4 HOH HOH 202 B HOH 6 4 HOH HOH 203 B HOH 7 4 HOH HOH 204 B HOH 8 4 HOH HOH 205 B HOH 9 4 HOH HOH 206 B HOH 10 4 HOH HOH 207 B HOH 11 4 HOH HOH 208 B HOH 12 4 HOH HOH 209 B HOH 14 4 HOH HOH 210 B HOH 15 4 HOH HOH 211 B HOH 18 4 HOH HOH 212 B HOH 21 4 HOH HOH 213 B HOH 29 4 HOH HOH 214 B HOH 30 4 HOH HOH 215 B HOH 32 4 HOH HOH 216 B HOH 33 4 HOH HOH 217 B HOH 35 4 HOH HOH 218 B HOH 36 4 HOH HOH 219 B HOH 39 4 HOH HOH 220 B HOH 40 4 HOH HOH 221 B HOH 41 4 HOH HOH 222 B HOH 42 4 HOH HOH 223 B HOH 44 4 HOH HOH 224 B HOH 45 4 HOH HOH 225 B HOH 48 4 HOH HOH 226 B HOH 50 4 HOH HOH 227 B HOH 51 4 HOH HOH 228 B HOH 57 4 HOH HOH 229 B HOH 58 4 HOH HOH 230 B HOH 59 4 HOH HOH 231 B HOH 60 4 HOH HOH 232 B HOH 64 4 HOH HOH 233 B HOH 67 4 HOH HOH 234 B HOH 68 4 HOH HOH 235 B HOH 71 4 HOH HOH 236 B HOH 72 4 HOH HOH 237 B HOH 74 4 HOH HOH 238 B HOH 78 4 HOH HOH 239 B HOH 80 4 HOH HOH 240 B HOH 81 4 HOH HOH 241 B HOH 85 4 HOH HOH 242 B HOH 86 4 HOH HOH 243 B HOH 87 4 HOH HOH 244 B HOH 88 4 HOH HOH 245 B HOH 90 4 HOH HOH 246 B HOH 91 4 HOH HOH 247 B HOH 93 4 HOH HOH 248 B HOH 94 4 HOH HOH 249 B HOH 102 4 HOH HOH 250 B HOH 105 4 HOH HOH 251 B HOH 106 4 HOH HOH 252 B HOH 108 4 HOH HOH 253 B HOH 109 4 HOH HOH 254 B HOH 110 4 HOH HOH 255 B HOH 111 4 HOH HOH 256 B HOH 114 4 HOH HOH 257 B HOH 115 4 HOH HOH 258 B HOH 118 4 HOH HOH 259 B HOH 120 4 HOH HOH 260 B HOH 121 4 HOH HOH 261 B HOH 124 4 HOH HOH 262 B HOH 127 4 HOH HOH 263 B HOH 129 4 HOH HOH 264 B HOH 130 4 HOH HOH 265 B HOH 131 4 HOH HOH 266 B Phaser MODE: MR_AUTO n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A GLU 2 n 5 GLU 2 A SER 3 n 6 SER 3 A PHE 4 n 7 PHE 4 A LEU 5 n 8 LEU 5 A LEU 6 n 9 LEU 6 A SER 7 n 10 SER 7 A LYS 8 n 11 LYS 8 A VAL 9 n 12 VAL 9 A SER 10 n 13 SER 10 A PHE 11 n 14 PHE 11 A VAL 12 n 15 VAL 12 A ILE 13 n 16 ILE 13 A LYS 14 n 17 LYS 14 A LYS 15 n 18 LYS 15 A ILE 16 n 19 ILE 16 A ARG 17 n 20 ARG 17 A LEU 18 n 21 LEU 18 A GLU 19 n 22 GLU 19 A LYS 20 n 23 LYS 20 A GLY 21 n 24 GLY 21 A MET 22 n 25 MET 22 A THR 23 n 26 THR 23 A GLN 24 n 27 GLN 24 A GLU 25 n 28 GLU 25 A ASP 26 n 29 ASP 26 A LEU 27 n 30 LEU 27 A ALA 28 n 31 ALA 28 A TYR 29 n 32 TYR 29 A LYS 30 n 33 LYS 30 A SER 31 n 34 SER 31 A ASN 32 n 35 ASN 32 A LEU 33 n 36 LEU 33 A ASP 34 n 37 ASP 34 A ARG 35 n 38 ARG 35 A THR 36 n 39 THR 36 A TYR 37 n 40 TYR 37 A ILE 38 n 41 ILE 38 A SER 39 n 42 SER 39 A GLY 40 n 43 GLY 40 A ILE 41 n 44 ILE 41 A GLU 42 n 45 GLU 42 A ARG 43 n 46 ARG 43 A ASN 44 n 47 ASN 44 A SER 45 n 48 SER 45 A ALA 46 n 49 ALA 46 A ASN 47 n 50 ASN 47 A LEU 48 n 51 LEU 48 A THR 49 n 52 THR 49 A ILE 50 n 53 ILE 50 A LYS 51 n 54 LYS 51 A SER 52 n 55 SER 52 A LEU 53 n 56 LEU 53 A GLU 54 n 57 GLU 54 A LEU 55 n 58 LEU 55 A ILE 56 n 59 ILE 56 A MET 57 n 60 MET 57 A LYS 58 n 61 LYS 58 A GLY 59 n 62 GLY 59 A LEU 60 n 63 LEU 60 A GLU 61 n 64 GLU 61 A VAL 62 n 65 VAL 62 A SER 63 n 66 SER 63 A ASP 64 n 67 ASP 64 A VAL 65 n 68 VAL 65 A VAL 66 n 69 VAL 66 A PHE 67 n 70 PHE 67 A PHE 68 n 71 PHE 68 A GLU 69 n 72 GLU 69 A MET 70 n 73 MET 70 A LEU 71 n 74 LEU 71 A ILE 72 n 75 ILE 72 A LYS 73 n 76 LYS 73 A GLU 74 n 77 GLU 74 A ILE 75 n 78 ILE 75 A LEU 76 n 79 LEU 76 A LYS 77 n 80 LYS 77 A HIS 78 n 81 HIS 78 A ASP 79 n 82 ASP 79 A n 1 -2 B n 2 -1 B n 3 0 B n 4 1 B GLU 2 n 5 GLU 2 B SER 3 n 6 SER 3 B PHE 4 n 7 PHE 4 B LEU 5 n 8 LEU 5 B LEU 6 n 9 LEU 6 B SER 7 n 10 SER 7 B LYS 8 n 11 LYS 8 B VAL 9 n 12 VAL 9 B SER 10 n 13 SER 10 B PHE 11 n 14 PHE 11 B VAL 12 n 15 VAL 12 B ILE 13 n 16 ILE 13 B LYS 14 n 17 LYS 14 B LYS 15 n 18 LYS 15 B ILE 16 n 19 ILE 16 B ARG 17 n 20 ARG 17 B LEU 18 n 21 LEU 18 B GLU 19 n 22 GLU 19 B LYS 20 n 23 LYS 20 B GLY 21 n 24 GLY 21 B MET 22 n 25 MET 22 B THR 23 n 26 THR 23 B GLN 24 n 27 GLN 24 B GLU 25 n 28 GLU 25 B ASP 26 n 29 ASP 26 B LEU 27 n 30 LEU 27 B ALA 28 n 31 ALA 28 B TYR 29 n 32 TYR 29 B LYS 30 n 33 LYS 30 B SER 31 n 34 SER 31 B ASN 32 n 35 ASN 32 B LEU 33 n 36 LEU 33 B ASP 34 n 37 ASP 34 B ARG 35 n 38 ARG 35 B THR 36 n 39 THR 36 B TYR 37 n 40 TYR 37 B ILE 38 n 41 ILE 38 B SER 39 n 42 SER 39 B GLY 40 n 43 GLY 40 B ILE 41 n 44 ILE 41 B GLU 42 n 45 GLU 42 B ARG 43 n 46 ARG 43 B ASN 44 n 47 ASN 44 B SER 45 n 48 SER 45 B ALA 46 n 49 ALA 46 B ASN 47 n 50 ASN 47 B LEU 48 n 51 LEU 48 B THR 49 n 52 THR 49 B ILE 50 n 53 ILE 50 B LYS 51 n 54 LYS 51 B SER 52 n 55 SER 52 B LEU 53 n 56 LEU 53 B GLU 54 n 57 GLU 54 B LEU 55 n 58 LEU 55 B ILE 56 n 59 ILE 56 B MET 57 n 60 MET 57 B LYS 58 n 61 LYS 58 B GLY 59 n 62 GLY 59 B LEU 60 n 63 LEU 60 B GLU 61 n 64 GLU 61 B VAL 62 n 65 VAL 62 B SER 63 n 66 SER 63 B ASP 64 n 67 ASP 64 B VAL 65 n 68 VAL 65 B VAL 66 n 69 VAL 66 B PHE 67 n 70 PHE 67 B PHE 68 n 71 PHE 68 B GLU 69 n 72 GLU 69 B MET 70 n 73 MET 70 B LEU 71 n 74 LEU 71 B ILE 72 n 75 ILE 72 B LYS 73 n 76 LYS 73 B GLU 74 n 77 GLU 74 B ILE 75 n 78 ILE 75 B LEU 76 n 79 LEU 76 B LYS 77 n 80 LYS 77 B HIS 78 n 81 HIS 78 B ASP 79 n 82 ASP 79 B author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 2 dimeric 1710 -82 9230 1200 -80 9740 A SER 39 A A OG SER 42 1_555 A NA 102 D NA NA 1_555 A HOH 217 I O HOH 1_555 70.9 A SER 39 A A OG SER 42 1_555 A NA 102 D NA NA 1_555 B GLU 25 B B OE1 GLU 28 1_555 137.9 A HOH 217 I O HOH 1_555 A NA 102 D NA NA 1_555 B GLU 25 B B OE1 GLU 28 1_555 150.1 A SER 39 A A OG SER 42 1_555 A NA 102 D NA NA 1_555 B HOH 219 J O HOH 1_555 64.2 A HOH 217 I O HOH 1_555 A NA 102 D NA NA 1_555 B HOH 219 J O HOH 1_555 134.1 B GLU 25 B B OE1 GLU 28 1_555 A NA 102 D NA NA 1_555 B HOH 219 J O HOH 1_555 73.7 B TYR 37 B OH TYR 40 1_555 B NA 104 H NA NA 1_555 B THR 49 B OG1 THR 52 1_555 141.3 B TYR 37 B OH TYR 40 1_555 B NA 104 H NA NA 1_555 B SER 52 B OG SER 55 1_555 89.9 B THR 49 B OG1 THR 52 1_555 B NA 104 H NA NA 1_555 B SER 52 B OG SER 55 1_555 65.3 B TYR 37 B OH TYR 40 1_555 B NA 104 H NA NA 1_555 B HOH 244 J O HOH 1_555 120.9 B THR 49 B OG1 THR 52 1_555 B NA 104 H NA NA 1_555 B HOH 244 J O HOH 1_555 97.6 B SER 52 B OG SER 55 1_555 B NA 104 H NA NA 1_555 B HOH 244 J O HOH 1_555 120.0 B TYR 37 B OH TYR 40 1_555 B NA 104 H NA NA 1_555 B HOH 260 J O HOH 1_555 81.8 B THR 49 B OG1 THR 52 1_555 B NA 104 H NA NA 1_555 B HOH 260 J O HOH 1_555 132.3 B SER 52 B OG SER 55 1_555 B NA 104 H NA NA 1_555 B HOH 260 J O HOH 1_555 155.6 B HOH 244 J O HOH 1_555 B NA 104 H NA NA 1_555 B HOH 260 J O HOH 1_555 49.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_455 x-1/2,y+1/2,z crystal symmetry operation -23.2000000000 25.5000000000 0.0000000000 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A HIS 0 A HIS 3 1 Y 1 A MET 1 A MET 4 1 Y 1 B GLY -2 B GLY 1 1 Y 1 B SER -1 B SER 2 1 Y 1 B HIS 0 B HIS 3 1 Y 1 B MET 1 B MET 4 1 Y 1 A B O O HOH HOH 257 248 2.19 1 B ASN 32 0.072 SIDE CHAIN 1 8.38 0.90 118.30 126.68 A A A CB CG OD1 ASP ASP ASP 34 34 34 N 1 -3.65 0.50 120.30 116.65 A A A NE CZ NH2 ARG ARG ARG 43 43 43 A A A N 1 6.90 0.90 118.30 125.20 A A A CB CG OD1 ASP ASP ASP 64 64 64 N 1 7.23 0.90 118.30 125.53 B B B CB CG OD1 ASP ASP ASP 34 34 34 N 1 6.26 0.90 118.30 124.56 B B B CB CG OD1 ASP ASP ASP 64 64 64 N 1 A A CE NZ LYS LYS 58 58 0.193 0.025 1.486 1.679 N 1 B B CD OE2 GLU GLU 2 2 0.101 0.011 1.252 1.353 N 1 B B CB CG ASP ASP 34 34 -0.128 0.021 1.513 1.385 N 61.550 18.5660 6.010 0.0000 0.0000 0.0000 -0.0000 0.0000 -0.0000 0.9710 0.9610 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY 0.2002 0.1771 0.1783 1.5000 24.7000 1377 27185 5.1000 97.7800 0.1929 0.1693 1.000 0.020 0.8197 1.2960 0.0480 0.0760 0.0750 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.0760 0.0750 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 1.5000 24.7000 125 1411 22 0 1264 0.033 0.020 1433 2.633 2.018 1947 4.962 5.000 194 25.472 24.737 57 13.894 15.000 325 12.214 15.000 8 0.187 0.200 234 0.016 0.020 1008 0.2620 0.2790 1.5390 87 1717 1804 20 91.7100 23.014 1.500 24.7 4F8D 90345 27204 -3.000 0.040 1 15.310 97.800 0.404 1.500 1.600 3.020 12431 4603 1 94.900 0.248 1.600 1.800 4.970 19092 6625 1 97.600 0.118 1.800 2.000 9.740 12885 4285 1 98.700 0.039 2.000 3.000 23.300 26248 8219 1 99.300 0.022 3.000 4.000 36.190 6455 2025 1 99.300 0.018 4.000 5.000 44.810 2420 727 1 98.100 0.017 5.000 6.000 42.860 1035 315 1 99.700 0.017 6.000 8.000 42.090 850 259 1 97.400 0.013 8.000 10.000 44.490 237 77 1 81.900 0.015 10.000 20.000 39.330 180 63 1 68.500 0.016 20.000 30.000 38.970 17 6 1 54.500 1 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection GDA Crystal Structure of an R46A mutant of the Restriction-Modification Controller Protein C.Esp1396I (Monoclinic Form) 1 N N 1 N N 2 N N 3 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N A SER 3 A SER 6 HELX_P A LYS 20 A LYS 23 1 1 18 A THR 23 A THR 26 HELX_P A ASN 32 A ASN 35 1 2 10 A ASP 34 A ASP 37 HELX_P A ASN 44 A ASN 47 1 3 11 A THR 49 A THR 52 HELX_P A GLU 61 A GLU 64 1 4 13 A SER 63 A SER 66 HELX_P A ASP 79 A ASP 82 1 5 17 B SER 3 B SER 6 HELX_P B LYS 20 B LYS 23 1 6 18 B THR 23 B THR 26 HELX_P B ASN 32 B ASN 35 1 7 10 B ASP 34 B ASP 37 HELX_P B ASN 44 B ASN 47 1 8 11 B THR 49 B THR 52 HELX_P B LEU 60 B LEU 63 1 9 12 B SER 63 B SER 66 HELX_P B ASP 79 B ASP 82 1 10 17 metalc 2.792 A A SER 39 A OG SER 42 1_555 A NA 102 D NA NA 1_555 metalc 2.034 A NA 102 D NA NA 1_555 A HOH 217 I O HOH 1_555 metalc 3.060 B A NA 102 D NA NA 1_555 B GLU 25 B OE1 GLU 28 1_555 metalc 2.765 A NA 102 D NA NA 1_555 B HOH 219 J O HOH 1_555 metalc 1.981 B TYR 37 B OH TYR 40 1_555 B NA 104 H NA NA 1_555 metalc 3.062 B THR 49 B OG1 THR 52 1_555 B NA 104 H NA NA 1_555 metalc 2.834 B SER 52 B OG SER 55 1_555 B NA 104 H NA NA 1_555 metalc 2.928 B NA 104 H NA NA 1_555 B HOH 244 J O HOH 1_555 metalc 1.938 B NA 104 H NA NA 1_555 B HOH 260 J O HOH 1_555 TRANSCRIPTION Restriction-modification, Helix-Turn-Helix, Transcriptional Regulator, DNA, TRANSCRIPTION Q8GGH0_9ENTR UNP 1 1 Q8GGH0 MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 1 79 4F8D 1 79 Q8GGH0 A 1 4 82 1 79 4F8D 1 79 Q8GGH0 B 1 4 82 1 expression tag GLY -2 4F8D A Q8GGH0 UNP 1 1 expression tag SER -1 4F8D A Q8GGH0 UNP 2 1 expression tag HIS 0 4F8D A Q8GGH0 UNP 3 1 ARG engineered mutation ALA 46 4F8D A Q8GGH0 UNP 46 49 2 expression tag GLY -2 4F8D B Q8GGH0 UNP 1 2 expression tag SER -1 4F8D B Q8GGH0 UNP 2 2 expression tag HIS 0 4F8D B Q8GGH0 UNP 3 2 ARG engineered mutation ALA 46 4F8D B Q8GGH0 UNP 46 49 BINDING SITE FOR RESIDUE SO4 A 101 A SO4 101 Software 8 BINDING SITE FOR RESIDUE NA A 102 A NA 102 Software 7 BINDING SITE FOR RESIDUE SO4 B 101 B SO4 101 Software 4 BINDING SITE FOR RESIDUE SO4 B 102 B SO4 102 Software 10 BINDING SITE FOR RESIDUE SO4 B 103 B SO4 103 Software 7 BINDING SITE FOR RESIDUE NA B 104 B NA 104 Software 6 A ARG 35 A ARG 38 8 1_555 A THR 36 A THR 39 8 1_555 A SER 39 A SER 42 8 1_555 A ARG 43 A ARG 46 8 1_555 A HOH 219 I HOH 8 1_555 B HIS 78 B HIS 81 8 3_545 B HOH 219 J HOH 8 1_555 B HOH 226 J HOH 8 3_545 A GLN 24 A GLN 27 7 1_555 A SER 39 A SER 42 7 1_555 A ARG 43 A ARG 46 7 1_555 A HOH 217 I HOH 7 1_555 B GLU 25 B GLU 28 7 1_555 B SO4 101 E SO4 7 3_545 B HOH 219 J HOH 7 1_555 A ARG 43 A ARG 46 4 3_455 A NA 102 D NA 4 3_455 B GLU 25 B GLU 28 4 3_455 B HIS 78 B HIS 81 4 1_555 A ARG 17 A ARG 20 10 1_555 A THR 23 A THR 26 10 1_555 A GLN 24 A GLN 27 10 1_555 B THR 23 B THR 26 10 1_555 B GLN 24 B GLN 27 10 1_555 B GLU 25 B GLU 28 10 1_555 B ARG 35 B ARG 38 10 1_555 B HOH 202 J HOH 10 1_555 B HOH 203 J HOH 10 1_555 B HOH 211 J HOH 10 1_555 A GLU 25 A GLU 28 7 1_555 A HIS 78 A HIS 81 7 3_445 B ARG 35 B ARG 38 7 1_555 B THR 36 B THR 39 7 1_555 B SER 39 B SER 42 7 1_555 B ARG 43 B ARG 46 7 1_555 B HOH 224 J HOH 7 1_555 B TYR 37 B TYR 40 6 1_555 B ASN 47 B ASN 50 6 1_555 B THR 49 B THR 52 6 1_555 B SER 52 B SER 55 6 1_555 B HOH 244 J HOH 6 1_555 B HOH 260 J HOH 6 1_555 5 C 1 2 1