0.038302
0.000000
0.000000
0.000000
0.018462
0.000000
0.000000
0.000000
0.009840
0.00000
0.00000
0.00000
Bao, R.
Esser, L.
Xia, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
26.108
54.164
101.626
C8 H10 F N O2 S
203.234
4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
AEBSF
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Br -1
79.904
BROMIDE ION
non-polymer
C H5 N3
59.070
GUANIDINE
non-polymer
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H2 O4 -2
102.046
MALONATE ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
N
4
N
S
N
5
N
F
N
6
N
O
N
7
N
O
Y
8
N
C
Y
9
N
C
Y
10
N
C
N
11
N
C
N
12
N
C
N
13
N
N
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
N
N
25
S
C
N
26
N
C
N
27
N
O
N
28
N
C
N
29
N
O
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
N
N
38
S
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
N
N
45
N
C
N
46
N
N
N
47
N
N
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
N
N
65
S
C
N
66
N
C
N
67
N
O
N
68
N
C
N
69
N
C
N
70
N
O
N
71
N
N
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
O
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
BR
N
98
N
C
N
99
N
N
N
100
N
N
N
101
N
N
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
R
C
N
108
R
C
N
109
S
C
N
110
R
C
N
111
R
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
Y
185
N
C
Y
186
N
N
Y
187
N
C
Y
188
N
C
Y
189
N
N
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
S
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
S
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
O
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
R
C
N
361
N
O
N
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
N
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
N
429
N
C
N
430
N
C
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
N
5
N
sing
N
6
N
sing
Y
7
N
doub
N
8
N
sing
N
9
N
doub
N
10
N
doub
Y
11
N
sing
N
12
N
sing
Y
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
doub
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
1065
1070
10.1073/pnas.1212431110
23277582
Structural basis for the specific recognition of dual receptors by the homopolymeric pH 6 antigen (Psa) fimbriae of Yersinia pestis.
2013
10.2210/pdb4f8l/pdb
pdb_00004f8l
100
1
CCD
2010-11-01
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9
1.0
22-ID
APS
0.9
SYNCHROTRON
APS BEAMLINE 22-ID
16249.079
pH 6 antigen
1
man
polymer
180.156
beta-D-galactopyranose
1
man
non-polymer
79.904
BROMIDE ION
36
syn
non-polymer
59.070
GUANIDINE
1
syn
non-polymer
203.234
4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
1
syn
non-polymer
75.067
GLYCINE
1
syn
non-polymer
102.046
MALONATE ION
1
syn
non-polymer
18.015
water
146
nat
water
Adhesin, Antigen 4
no
no
MNTFHVDFAPNTGEIFAGKQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNWYIN
DDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVFDNKQSTVINSKDVSGEVTVKQGLEHHHHHH
MNTFHVDFAPNTGEIFAGKQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNWYIN
DDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVFDNKQSTVINSKDVSGEVTVKQGLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
2
115
psaA, y2882, YPO1303, YP_1289
632
Yersinia pestis
562
Escherichia coli
BL21(DE3)
sample
120
137
psaA, y2882, YPO1303, YP_1289
632
Yersinia pestis
562
Escherichia coli
BL21(DE3)
1
2.22
44.52
4.2
1.5 M ammonium sulphate, 0.17 M Guanidine HCl, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
entity_src_gen
software
software
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_special_symmetry
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Refinement description
Source and taxonomy
Refinement description
Data collection
Database references
Derived calculations
Structure summary
Data collection
Database references
Structure summary
1
0
2013-05-22
1
1
2013-08-07
1
2
2017-08-16
1
3
2017-11-15
1
4
2020-07-29
1
5
2024-02-28
_software.classification
_software.name
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
RCSB
Y
RCSB
2012-05-17
REL
REL
GAL
beta-D-galactopyranose
BR
BROMIDE ION
GAI
GUANIDINE
AES
4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
GLY
GLYCINE
MLI
MALONATE ION
HOH
water
GAL
1
2
GAL
GAL
201
A
BR
1
3
BR
BR
202
A
BR
2
3
BR
BR
203
A
BR
3
3
BR
BR
204
A
BR
4
3
BR
BR
205
A
BR
5
3
BR
BR
206
A
BR
6
3
BR
BR
207
A
BR
7
3
BR
BR
208
A
BR
8
3
BR
BR
209
A
BR
9
3
BR
BR
210
A
BR
10
3
BR
BR
211
A
BR
11
3
BR
BR
212
A
BR
12
3
BR
BR
213
A
BR
15
3
BR
BR
214
A
BR
16
3
BR
BR
215
A
BR
17
3
BR
BR
216
A
BR
18
3
BR
BR
217
A
BR
19
3
BR
BR
218
A
BR
20
3
BR
BR
219
A
BR
21
3
BR
BR
220
A
BR
22
3
BR
BR
221
A
BR
23
3
BR
BR
222
A
BR
24
3
BR
BR
223
A
BR
25
3
BR
BR
224
A
BR
26
3
BR
BR
225
A
BR
27
3
BR
BR
226
A
BR
28
3
BR
BR
227
A
BR
29
3
BR
BR
228
A
BR
30
3
BR
BR
229
A
BR
31
3
BR
BR
230
A
BR
32
3
BR
BR
231
A
BR
33
3
BR
BR
232
A
BR
34
3
BR
BR
233
A
BR
35
3
BR
BR
234
A
GAI
1
4
GAI
GAI
235
A
BR
1
3
BR
BR
236
A
BR
1
3
BR
BR
237
A
BR
1
3
BR
BR
238
A
AES
1
5
AES
AES
239
A
GLY
240
6
GLY
GLY
240
A
MLI
1
7
MLI
MLI
241
A
HOH
2
8
HOH
HOH
301
A
HOH
3
8
HOH
HOH
302
A
HOH
5
8
HOH
HOH
303
A
HOH
6
8
HOH
HOH
304
A
HOH
7
8
HOH
HOH
305
A
HOH
9
8
HOH
HOH
306
A
HOH
11
8
HOH
HOH
307
A
HOH
13
8
HOH
HOH
308
A
HOH
14
8
HOH
HOH
309
A
HOH
16
8
HOH
HOH
310
A
HOH
17
8
HOH
HOH
311
A
HOH
19
8
HOH
HOH
312
A
HOH
20
8
HOH
HOH
313
A
HOH
24
8
HOH
HOH
314
A
HOH
26
8
HOH
HOH
315
A
HOH
30
8
HOH
HOH
316
A
HOH
31
8
HOH
HOH
317
A
HOH
32
8
HOH
HOH
318
A
HOH
33
8
HOH
HOH
319
A
HOH
34
8
HOH
HOH
320
A
HOH
36
8
HOH
HOH
321
A
HOH
37
8
HOH
HOH
322
A
HOH
40
8
HOH
HOH
323
A
HOH
41
8
HOH
HOH
324
A
HOH
42
8
HOH
HOH
325
A
HOH
43
8
HOH
HOH
326
A
HOH
45
8
HOH
HOH
327
A
HOH
47
8
HOH
HOH
328
A
HOH
48
8
HOH
HOH
329
A
HOH
50
8
HOH
HOH
330
A
HOH
51
8
HOH
HOH
331
A
HOH
54
8
HOH
HOH
332
A
HOH
55
8
HOH
HOH
333
A
HOH
56
8
HOH
HOH
334
A
HOH
57
8
HOH
HOH
335
A
HOH
60
8
HOH
HOH
336
A
HOH
61
8
HOH
HOH
337
A
HOH
62
8
HOH
HOH
338
A
HOH
65
8
HOH
HOH
339
A
HOH
66
8
HOH
HOH
340
A
HOH
67
8
HOH
HOH
341
A
HOH
71
8
HOH
HOH
342
A
HOH
73
8
HOH
HOH
343
A
HOH
74
8
HOH
HOH
344
A
HOH
75
8
HOH
HOH
345
A
HOH
76
8
HOH
HOH
346
A
HOH
77
8
HOH
HOH
347
A
HOH
79
8
HOH
HOH
348
A
HOH
80
8
HOH
HOH
349
A
HOH
81
8
HOH
HOH
350
A
HOH
86
8
HOH
HOH
351
A
HOH
87
8
HOH
HOH
352
A
HOH
88
8
HOH
HOH
353
A
HOH
94
8
HOH
HOH
354
A
HOH
100
8
HOH
HOH
355
A
HOH
108
8
HOH
HOH
356
A
HOH
109
8
HOH
HOH
357
A
HOH
113
8
HOH
HOH
358
A
HOH
124
8
HOH
HOH
359
A
HOH
128
8
HOH
HOH
360
A
HOH
129
8
HOH
HOH
361
A
HOH
131
8
HOH
HOH
362
A
HOH
137
8
HOH
HOH
363
A
HOH
140
8
HOH
HOH
364
A
HOH
142
8
HOH
HOH
365
A
HOH
152
8
HOH
HOH
366
A
HOH
158
8
HOH
HOH
367
A
HOH
164
8
HOH
HOH
368
A
HOH
165
8
HOH
HOH
369
A
HOH
166
8
HOH
HOH
370
A
HOH
167
8
HOH
HOH
371
A
HOH
169
8
HOH
HOH
372
A
HOH
173
8
HOH
HOH
373
A
HOH
174
8
HOH
HOH
374
A
HOH
175
8
HOH
HOH
375
A
HOH
176
8
HOH
HOH
376
A
HOH
177
8
HOH
HOH
377
A
HOH
178
8
HOH
HOH
378
A
HOH
179
8
HOH
HOH
379
A
HOH
180
8
HOH
HOH
380
A
HOH
181
8
HOH
HOH
381
A
HOH
182
8
HOH
HOH
382
A
HOH
183
8
HOH
HOH
383
A
HOH
184
8
HOH
HOH
384
A
HOH
185
8
HOH
HOH
385
A
HOH
187
8
HOH
HOH
386
A
HOH
188
8
HOH
HOH
387
A
HOH
189
8
HOH
HOH
388
A
HOH
190
8
HOH
HOH
389
A
HOH
191
8
HOH
HOH
390
A
HOH
192
8
HOH
HOH
391
A
HOH
193
8
HOH
HOH
392
A
HOH
194
8
HOH
HOH
393
A
HOH
195
8
HOH
HOH
394
A
HOH
196
8
HOH
HOH
395
A
HOH
197
8
HOH
HOH
396
A
HOH
199
8
HOH
HOH
397
A
HOH
200
8
HOH
HOH
398
A
HOH
202
8
HOH
HOH
399
A
HOH
203
8
HOH
HOH
400
A
HOH
205
8
HOH
HOH
401
A
HOH
206
8
HOH
HOH
402
A
HOH
207
8
HOH
HOH
403
A
HOH
208
8
HOH
HOH
404
A
HOH
210
8
HOH
HOH
405
A
HOH
213
8
HOH
HOH
406
A
HOH
215
8
HOH
HOH
407
A
HOH
217
8
HOH
HOH
408
A
HOH
218
8
HOH
HOH
409
A
HOH
220
8
HOH
HOH
410
A
HOH
221
8
HOH
HOH
411
A
HOH
223
8
HOH
HOH
412
A
HOH
225
8
HOH
HOH
413
A
HOH
226
8
HOH
HOH
414
A
HOH
227
8
HOH
HOH
415
A
HOH
228
8
HOH
HOH
416
A
HOH
229
8
HOH
HOH
417
A
HOH
231
8
HOH
HOH
418
A
HOH
232
8
HOH
HOH
419
A
HOH
233
8
HOH
HOH
420
A
HOH
234
8
HOH
HOH
421
A
HOH
236
8
HOH
HOH
422
A
HOH
238
8
HOH
HOH
423
A
HOH
239
8
HOH
HOH
424
A
HOH
240
8
HOH
HOH
425
A
HOH
242
8
HOH
HOH
426
A
HOH
243
8
HOH
HOH
427
A
HOH
246
8
HOH
HOH
428
A
HOH
247
8
HOH
HOH
429
A
HOH
248
8
HOH
HOH
430
A
HOH
249
8
HOH
HOH
431
A
HOH
250
8
HOH
HOH
432
A
HOH
251
8
HOH
HOH
433
A
HOH
252
8
HOH
HOH
434
A
HOH
253
8
HOH
HOH
435
A
HOH
254
8
HOH
HOH
436
A
HOH
255
8
HOH
HOH
437
A
HOH
257
8
HOH
HOH
438
A
HOH
258
8
HOH
HOH
439
A
HOH
259
8
HOH
HOH
440
A
HOH
260
8
HOH
HOH
441
A
HOH
261
8
HOH
HOH
442
A
HOH
262
8
HOH
HOH
443
A
HOH
263
8
HOH
HOH
444
A
HOH
264
8
HOH
HOH
445
A
HOH
265
8
HOH
HOH
446
A
n
1
1
A
ASN
2
n
2
ASN
2
A
THR
3
n
3
THR
3
A
PHE
4
n
4
PHE
4
A
HIS
5
n
5
HIS
5
A
VAL
6
n
6
VAL
6
A
ASP
7
n
7
ASP
7
A
PHE
8
n
8
PHE
8
A
ALA
9
n
9
ALA
9
A
PRO
10
n
10
PRO
10
A
ASN
11
n
11
ASN
11
A
THR
12
n
12
THR
12
A
GLY
13
n
13
GLY
13
A
GLU
14
n
14
GLU
14
A
ILE
15
n
15
ILE
15
A
PHE
16
n
16
PHE
16
A
ALA
17
n
17
ALA
17
A
GLY
18
n
18
GLY
18
A
LYS
19
n
19
LYS
19
A
GLN
20
n
20
GLN
20
A
PRO
21
n
21
PRO
21
A
GLY
22
n
22
GLY
22
A
ASP
23
n
23
ASP
23
A
VAL
24
n
24
VAL
24
A
THR
25
n
25
THR
25
A
MET
26
n
26
MET
26
A
PHE
27
n
27
PHE
27
A
THR
28
n
28
THR
28
A
LEU
29
n
29
LEU
29
A
THR
30
n
30
THR
30
A
MET
31
n
31
MET
31
A
GLY
32
n
32
GLY
32
A
ASP
33
n
33
ASP
33
A
THR
34
n
34
THR
34
A
ALA
35
n
35
ALA
35
A
PRO
36
n
36
PRO
36
A
HIS
37
n
37
HIS
37
A
GLY
38
n
38
GLY
38
A
GLY
39
n
39
GLY
39
A
TRP
40
n
40
TRP
40
A
ARG
41
n
41
ARG
41
A
LEU
42
n
42
LEU
42
A
ILE
43
n
43
ILE
43
A
PRO
44
n
44
PRO
44
A
THR
45
n
45
THR
45
A
GLY
46
n
46
GLY
46
A
ASP
47
n
47
ASP
47
A
SER
48
n
48
SER
48
A
LYS
49
n
49
LYS
49
A
GLY
50
n
50
GLY
50
A
GLY
51
n
51
GLY
51
A
TYR
52
n
52
TYR
52
A
MET
53
n
53
MET
53
A
ILE
54
n
54
ILE
54
A
SER
55
n
55
SER
55
A
ALA
56
n
56
ALA
56
A
ASP
57
n
57
ASP
57
A
GLY
58
n
58
GLY
58
A
ASP
59
n
59
ASP
59
A
TYR
60
n
60
TYR
60
A
VAL
61
n
61
VAL
61
A
GLY
62
n
62
GLY
62
A
LEU
63
n
63
LEU
63
A
TYR
64
n
64
TYR
64
A
SER
65
n
65
SER
65
A
TYR
66
n
66
TYR
66
A
MET
67
n
67
MET
67
A
MET
68
n
68
MET
68
A
SER
69
n
69
SER
69
A
TRP
70
n
70
TRP
70
A
VAL
71
n
71
VAL
71
A
GLY
72
n
72
GLY
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
ASN
75
n
75
ASN
75
A
ASN
76
n
76
ASN
76
A
TRP
77
n
77
TRP
77
A
TYR
78
n
78
TYR
78
A
ILE
79
n
79
ILE
79
A
ASN
80
n
80
ASN
80
A
ASP
81
n
81
ASP
81
A
ASP
82
n
82
ASP
82
A
SER
83
n
83
SER
83
A
PRO
84
n
84
PRO
84
A
LYS
85
n
85
LYS
85
A
ASP
86
n
86
ASP
86
A
ILE
87
n
87
ILE
87
A
LYS
88
n
88
LYS
88
A
ASP
89
n
89
ASP
89
A
HIS
90
n
90
HIS
90
A
LEU
91
n
91
LEU
91
A
TYR
92
n
92
TYR
92
A
VAL
93
n
93
VAL
93
A
LYS
94
n
94
LYS
94
A
ALA
95
n
95
ALA
95
A
GLY
96
n
96
GLY
96
A
THR
97
n
97
THR
97
A
VAL
98
n
98
VAL
98
A
LEU
99
n
99
LEU
99
A
LYS
100
n
100
LYS
100
A
PRO
101
n
101
PRO
101
A
THR
102
n
102
THR
102
A
THR
103
n
103
THR
103
A
TYR
104
n
104
TYR
104
A
LYS
105
n
105
LYS
105
A
PHE
106
n
106
PHE
106
A
THR
107
n
107
THR
107
A
GLY
108
n
108
GLY
108
A
ARG
109
n
109
ARG
109
A
VAL
110
n
110
VAL
110
A
GLU
111
n
111
GLU
111
A
GLU
112
n
112
GLU
112
A
TYR
113
n
113
TYR
113
A
VAL
114
n
114
VAL
114
A
PHE
115
n
115
PHE
115
A
ASP
116
n
116
ASP
116
A
ASN
117
n
117
ASN
117
A
LYS
118
n
118
LYS
118
A
GLN
119
n
119
GLN
119
A
SER
120
n
120
SER
120
A
THR
121
n
121
THR
121
A
VAL
122
n
122
VAL
122
A
ILE
123
n
123
ILE
123
A
ASN
124
n
124
ASN
124
A
SER
125
n
125
SER
125
A
LYS
126
n
126
LYS
126
A
ASP
127
n
127
ASP
127
A
VAL
128
n
128
VAL
128
A
SER
129
n
129
SER
129
A
GLY
130
n
130
GLY
130
A
GLU
131
n
131
GLU
131
A
VAL
132
n
132
VAL
132
A
THR
133
n
133
THR
133
A
VAL
134
n
134
VAL
134
A
LYS
135
n
135
LYS
135
A
GLN
136
n
136
GLN
136
A
GLY
137
n
137
GLY
137
A
LEU
138
n
138
LEU
138
A
GLU
139
n
139
GLU
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
9
A
N
ALA
9
A
O
THR
28
A
O
THR
28
A
N
LEU
29
A
N
LEU
29
A
O
ASP
89
A
O
ASP
89
A
O
TYR
92
A
O
TYR
92
A
N
TYR
64
A
N
TYR
64
A
N
GLY
18
A
N
GLY
18
A
O
LEU
99
A
O
LEU
99
A
O
VAL
61
A
O
VAL
61
A
N
MET
53
A
N
MET
53
A
N
ILE
54
A
N
ILE
54
A
O
LYS
105
A
O
LYS
105
A
O
ARG
109
A
O
ARG
109
A
N
ILE
43
A
N
ILE
43
A
N
TRP
40
A
N
TRP
40
A
O
ILE
79
A
O
ILE
79
A
O
ASN
76
A
O
ASN
76
A
N
VAL
71
A
N
VAL
71
A
O
VAL
61
A
O
VAL
61
A
N
MET
53
A
N
MET
53
A
N
ILE
54
A
N
ILE
54
A
O
LYS
105
A
O
LYS
105
A
N
TYR
104
A
N
TYR
104
A
O
VAL
132
A
O
VAL
132
1
A
BR
214
O
BR
1
A
HOH
324
QA
HOH
1
A
CG
ASN
2
A
CG
ASN
2
1
Y
1
A
OD1
ASN
2
A
OD1
ASN
2
1
Y
1
A
ND2
ASN
2
A
ND2
ASN
2
1
Y
1
A
F
AES
239
NA
F
AES
1
1
N
1
A
MET
1
A
MET
1
1
Y
1
A
HIS
140
A
HIS
140
1
Y
1
A
HIS
141
A
HIS
141
1
Y
1
A
HIS
142
A
HIS
142
1
Y
1
A
HIS
143
A
HIS
143
1
Y
1
A
HIS
144
A
HIS
144
1
Y
1
A
HIS
145
A
HIS
145
1
Y
1
A
A
HH
S
TYR
AES
52
239
1.50
1
A
A
O
O
HOH
HOH
341
426
1.85
1
A
A
O
O
HOH
HOH
404
435
1.98
1
A
A
O
O
HOH
HOH
360
378
1.99
1
9.79
1.60
100.20
109.99
A
A
A
CG
SD
CE
MET
MET
MET
53
53
53
N
1
A
A
HZ1
O8
LYS
MLI
49
241
1.60
1_555
4_555
1
A
A
O
O
HOH
HOH
317
433
1.80
1_555
1_655
1
A
A
O
O
HOH
HOH
375
425
1.89
1_555
3_555
1
A
A
O
O
HOH
HOH
378
423
1.96
1_555
1_455
1
A
A
O
O
GLY
HOH
240
340
2.08
1_555
4_555
1
A
GLN
119
-144.55
-154.45
20.07
-1.66410
0.00000
-0.00000
6.53750
-0.00000
-4.87340
0.182
0.139
0.141
1.50
27.08
1178
23029
5.120
95.9
1.000
0.260
0.300
1
1.350
SIRAS
17.020
1.11
1.30
ML
FLAT BULK SOLVENT MODEL
48.69
0.40
1.50
27.08
146
1295
76
0
1073
0.013
1164
1.393
1578
13.775
414
0.317
170
0.007
202
0.2825
0.2011
1.5668
115
2247
80.00
0.2182
0.1836
1.6494
143
2598
93.00
0.2065
0.1522
1.7528
171
2740
98.00
0.2002
0.1259
1.8881
147
2754
98.00
0.1509
0.1091
2.0780
144
2793
99.00
0.1507
0.1156
2.3786
149
2814
99.00
0.1686
0.1325
2.9961
145
2878
99.00
0.1836
0.1490
27.0864
164
3027
100.00
1.499
50.000
4F8L
0.10900
1
9.0000
4.800
96.8
0.53800
1.50
1.55
1
4.30
90.7
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
phasing
Kevin Cowtan
kowtan@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/dm.html
DM
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.2_869
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
DENZO
data scaling
HKL-2000
X-ray structure of PsaA from Yersinia pestis, in complex with galactose and AEBSF
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
3
N
N
5
N
N
6
N
N
7
N
N
8
N
N
A
GLY
46
A
GLY
46
HELX_P
A
LYS
49
A
LYS
49
5
1
4
A
GLY
72
A
GLY
72
HELX_P
A
ASN
75
A
ASN
75
5
2
4
CELL ADHESION/inhibitor
Antigens, Bacterial Proteins, Fimbriae, Molecular Sequence Data, Protein Folding, All Beta-strand, Ig-fold, Adhesion, CELL ADHESION-inhibitor complex
PSAA_YERPE
UNP
1
45
P31522
NTFHVDFAPNTGEIFAGKQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNWYIND
DSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVF
PSAA_YERPE
UNP
1
27
P31522
STVINSKDVSGEVTVKQG
45
158
4F8L
2
115
P31522
A
1
2
115
27
44
4F8L
120
137
P31522
A
2
120
137
1
expression tag
MET
1
4F8L
A
P31522
UNP
1
1
linker
ASP
116
4F8L
A
P31522
UNP
116
1
linker
ASN
117
4F8L
A
P31522
UNP
117
1
linker
LYS
118
4F8L
A
P31522
UNP
118
1
linker
GLN
119
4F8L
A
P31522
UNP
119
2
expression tag
LEU
138
4F8L
A
P31522
UNP
138
2
expression tag
GLU
139
4F8L
A
P31522
UNP
139
2
expression tag
HIS
140
4F8L
A
P31522
UNP
140
2
expression tag
HIS
141
4F8L
A
P31522
UNP
141
2
expression tag
HIS
142
4F8L
A
P31522
UNP
142
2
expression tag
HIS
143
4F8L
A
P31522
UNP
143
2
expression tag
HIS
144
4F8L
A
P31522
UNP
144
2
expression tag
HIS
145
4F8L
A
P31522
UNP
145
4
2
6
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
5
A
HIS
5
A
PRO
10
A
PRO
10
A
VAL
24
A
VAL
24
A
GLY
32
A
GLY
32
A
ILE
87
A
ILE
87
A
VAL
93
A
VAL
93
A
TYR
64
A
TYR
64
A
SER
65
A
SER
65
A
GLY
18
A
GLY
18
A
LYS
19
A
LYS
19
A
VAL
98
A
VAL
98
A
LEU
99
A
LEU
99
A
TYR
60
A
TYR
60
A
GLY
62
A
GLY
62
A
TYR
52
A
TYR
52
A
SER
55
A
SER
55
A
THR
103
A
THR
103
A
ASP
116
A
ASP
116
A
GLY
39
A
GLY
39
A
PRO
44
A
PRO
44
A
ASN
76
A
ASN
76
A
ASN
80
A
ASN
80
A
SER
69
A
SER
69
A
VAL
71
A
VAL
71
A
TYR
60
A
TYR
60
A
GLY
62
A
GLY
62
A
TYR
52
A
TYR
52
A
SER
55
A
SER
55
A
THR
103
A
THR
103
A
ASP
116
A
ASP
116
A
GLN
119
A
GLN
119
A
THR
133
A
THR
133
17
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