0.006055
0.000000
0.000000
0.000000
0.005955
0.000000
0.000000
0.000000
0.012865
0.00000
0.00000
0.00000
Bohm, A.
Harrison, C.J.
Schaffhausen, B.S.
Jiang, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
165.150
167.922
77.728
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
S
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
R
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
US
J.Virol.
JOVIAM
0825
0022-538X
87
13751
13759
10.1128/JVI.01740-13
24109229
Polyomavirus large T antigen binds symmetrical repeats at the viral origin in an asymmetrical manner.
2013
10.2210/pdb4fb3/pdb
pdb_00004fb3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-09-22
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.075
1.0
X29A
NSLS
1.075
SYNCHROTRON
NSLS BEAMLINE X29A
7992.104
ORI DNA oligonucleotide-Crick strand
1
syn
polymer
7992.104
ORI DNA oligonucleotide-Watson strand
1
syn
polymer
16957.445
Large T antigen
3.6.4.-
origin binding domain, UNP residues 290-420
3
man
polymer
LT, LT-AG
no
no
(DC)(DG)(DG)(DA)(DG)(DG)(DC)(DC)(DA)(DG)(DG)(DG)(DG)(DC)(DC)(DC)(DC)(DC)(DG)(DG)
(DC)(DC)(DT)(DC)(DT)(DG)
CGGAGGCCAGGGGCCCCCGGCCTCTG
C
polydeoxyribonucleotide
no
no
(DG)(DC)(DA)(DG)(DA)(DG)(DG)(DC)(DC)(DG)(DG)(DG)(DG)(DG)(DC)(DC)(DC)(DC)(DT)(DG)
(DG)(DC)(DC)(DT)(DC)(DC)
GCAGAGGCCGGGGGCCCCTGGCCTCC
W
polydeoxyribonucleotide
no
no
MHHHHHHSDFPSSLTGYLSHAIYSNKTFPAFLVYSTKEKCKQLYDTIGKFRPEFKCLVHYEEGGMLFFLTMTKHRVSAVK
NYCSKLCSVSFLMCKAVTKPMECYQVVTAAPFQLITENKPGLHQFEFTDEPEEQKAVDGSHHHHHH
MHHHHHHSDFPSSLTGYLSHAIYSNKTFPAFLVYSTKEKCKQLYDTIGKFRPEFKCLVHYEEGGMLFFLTMTKHRVSAVK
NYCSKLCSVSFLMCKAVTKPMECYQVVTAAPFQLITENKPGLHQFEFTDEPEEQKAVDGSHHHHHH
A,B,E
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MPyV
sample
Large T-antigen
10634
Mouse polyomavirus
469008
Escherichia coli
Rosetta(DE3)
plasmid
pET30a
1
4.03
69.48
VAPOR DIFFUSION, SITTING DROP
7.1
14% PEG 3350, 140 mM sodium citrate, pH 7.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
-4.111
1
19
C
2
W
26
0.720
C_DG2:DC26_W
1
-14.779
-0.418
-0.313
-0.178
-3.853
1
C
3
W
25
-17.179
C_DG3:DC25_W
2
-10.601
-0.277
-0.124
-0.116
0.280
1
20
C
4
W
24
-1.202
C_DA4:DT24_W
3
-7.235
0.363
0.040
-0.056
19.146
1
19
C
5
W
23
1.255
C_DG5:DC23_W
4
-11.607
-1.093
0.619
-0.157
11.832
1
19
C
6
W
22
-3.330
C_DG6:DC22_W
5
-19.591
-0.787
0.601
-0.378
-6.418
1
19
C
7
W
21
5.513
C_DC7:DG21_W
6
-23.729
0.774
0.466
-0.252
3.403
1
19
C
8
W
20
-0.251
C_DC8:DG20_W
7
-10.672
0.622
0.017
-0.207
4.741
1
20
C
9
W
19
2.836
C_DA9:DT19_W
8
-12.003
0.135
0.407
-0.157
9.574
1
C
10
W
18
11.477
C_DG10:DC18_W
9
-14.876
1.576
0.517
0.291
-11.906
1
19
C
11
W
17
4.677
C_DG11:DC17_W
10
-20.867
0.752
-0.591
-0.112
-16.331
1
19
C
12
W
16
1.102
C_DG12:DC16_W
11
-8.385
-0.404
-1.296
-0.326
-8.149
1
C
13
W
15
-8.539
C_DG13:DC15_W
12
-23.707
-1.323
-0.770
-0.323
-3.249
1
19
C
14
W
14
2.033
C_DC14:DG14_W
13
-19.155
0.462
-0.279
-0.238
-6.261
1
19
C
15
W
13
0.135
C_DC15:DG13_W
14
-6.389
0.514
-0.152
-0.187
25.934
1
19
C
16
W
12
-0.358
C_DC16:DG12_W
15
-14.067
-0.033
-0.540
-0.005
10.630
1
19
C
17
W
11
-0.559
C_DC17:DG11_W
16
1.199
-0.239
-0.116
-0.041
-1.491
1
19
C
18
W
10
1.099
C_DC18:DG10_W
17
-4.494
-0.626
-0.047
-0.042
5.964
1
19
C
19
W
9
-1.403
C_DG19:DC9_W
18
1.326
-0.813
-0.198
-0.310
3.689
1
19
C
20
W
8
2.086
C_DG20:DC8_W
19
-13.825
0.301
0.065
0.208
1.019
1
19
C
21
W
7
-7.137
C_DC21:DG7_W
20
-26.337
0.507
0.792
-0.413
-20.744
1
19
C
22
W
6
-2.007
C_DC22:DG6_W
21
-11.341
1.055
0.177
-0.404
-4.203
1
20
C
23
W
5
-9.467
C_DT23:DA5_W
22
-20.172
-0.818
0.302
-0.103
11.530
1
19
C
24
W
4
-5.797
C_DC24:DG4_W
23
-13.108
-0.899
-0.123
0.067
15.707
1
20
C
25
W
3
-3.971
C_DT25:DA3_W
24
-10.796
0.254
0.575
-0.280
23.683
1
C
26
W
2
13.036
C_DG26:DC2_W
25
-24.860
0.143
1.111
0.015
3.185
40.606
C
C
2
3
11.107
W
W
26
25
3.243
7.634
-0.370
-0.124
CC_DG2DG3:DC25DC26_WW
1
-6.564
9.550
39.389
-1.027
-0.196
3.601
39.881
C
C
3
4
-9.780
W
W
25
24
3.621
-6.641
0.372
-0.110
CC_DG3DA4:DT24DC25_WW
2
1.222
-1.799
39.328
0.691
-0.389
2.075
21.746
C
C
4
5
16.151
W
W
24
23
2.836
5.890
0.952
-0.566
CC_DA4DG5:DC23DT24_WW
3
-7.525
20.636
19.556
-3.337
-4.872
3.438
37.117
C
C
5
6
3.743
W
W
23
22
3.391
2.366
-0.937
-1.036
CC_DG5DG6:DC22DC23_WW
4
-7.414
11.728
36.320
-1.961
0.426
3.677
44.787
C
C
6
7
1.920
W
W
22
21
3.717
1.462
-0.023
-1.147
CC_DG6DC7:DG21DC22_WW
5
-2.209
2.901
44.713
-1.656
-0.197
3.028
32.878
C
C
7
8
-2.282
W
W
21
20
3.071
-1.283
0.107
0.134
CC_DC7DC8:DG20DG21_WW
6
6.396
-11.371
32.242
0.443
0.840
3.574
33.314
C
C
8
9
12.786
W
W
20
19
3.447
7.207
-0.602
0.764
CC_DC8DA9:DT19DG20_WW
7
-7.909
14.032
31.595
0.009
-0.404
3.179
42.006
C
C
9
10
2.946
W
W
19
18
3.173
2.110
0.331
0.040
CC_DA9DG10:DC18DT19_WW
8
1.225
-1.710
41.938
-0.156
-0.338
3.431
33.898
C
C
10
11
11.341
W
W
18
17
3.791
6.503
-0.564
-0.172
CC_DG10DG11:DC17DC18_WW
9
8.658
-15.100
32.171
-1.481
2.546
3.468
29.118
C
C
11
12
16.817
W
W
17
16
3.434
8.278
0.541
0.489
CC_DG11DG12:DC16DC17_WW
10
6.178
-12.551
27.262
-1.003
0.399
3.339
27.782
C
C
12
13
-1.305
W
W
16
15
3.125
-0.617
-1.219
0.276
CC_DG12DG13:DC15DC16_WW
11
-8.300
17.547
26.529
0.725
0.520
3.246
45.487
C
C
13
14
0.617
W
W
15
14
3.218
0.477
0.889
-0.729
CC_DG13DC14:DG14DC15_WW
12
2.114
-2.735
45.438
-0.984
-0.965
3.334
36.175
C
C
14
15
8.331
W
W
14
13
3.280
5.126
1.121
-0.491
CC_DC14DC15:DG13DG14_WW
13
7.033
-11.431
35.147
-1.532
-0.789
2.536
25.702
C
C
15
16
-7.367
W
W
13
12
2.758
-3.218
-0.397
-0.364
CC_DC15DC16:DG12DG13_WW
14
7.810
-17.878
24.296
-0.063
2.724
3.884
34.168
C
C
16
17
2.104
W
W
12
11
3.942
1.235
0.348
-0.637
CC_DC16DC17:DG11DG12_WW
15
-2.425
4.131
34.063
-1.318
-1.052
3.408
34.886
C
C
17
18
15.889
W
W
11
10
3.564
9.400
0.819
-0.358
CC_DC17DC18:DG10DG11_WW
16
3.452
-5.834
33.460
-2.150
-0.796
3.254
33.838
C
C
18
19
20.008
W
W
10
9
3.161
11.391
0.687
0.624
CC_DC18DG19:DC9DG10_WW
17
4.774
-8.386
31.565
-0.798
-0.397
3.334
38.056
C
C
19
20
-0.604
W
W
9
8
3.339
-0.394
0.036
-0.030
CC_DG19DG20:DC8DC9_WW
18
-1.879
2.883
38.010
0.005
-0.299
2.993
37.686
C
C
20
21
10.621
W
W
8
7
3.339
6.792
-0.291
-1.691
CC_DG20DC21:DG7DC8_WW
19
-6.646
10.393
36.511
-3.485
-0.397
3.854
45.225
C
C
21
22
-6.114
W
W
7
6
3.662
-4.649
0.998
-0.800
CC_DC21DC22:DG6DG7_WW
20
11.254
-14.799
43.638
-0.554
-0.121
2.765
15.198
C
C
22
23
6.832
W
W
6
5
3.008
1.801
-1.164
-1.063
CC_DC22DT23:DA5DG6_WW
21
1.149
-4.360
15.048
-5.313
5.227
2.882
33.844
C
C
23
24
-1.477
W
W
5
4
2.860
-0.860
0.289
-0.627
CC_DT23DC24:DG4DA5_WW
22
1.125
-1.933
33.815
-0.955
-0.337
3.275
41.180
C
C
24
25
3.490
W
W
4
3
3.395
2.444
0.243
-0.750
CC_DC24DT25:DA3DG4_WW
23
-6.309
9.007
40.645
-1.337
-1.045
3.075
38.548
C
C
25
26
7.217
W
W
3
2
3.038
4.752
-0.065
0.490
CC_DT25DG26:DC2DA3_WW
24
-1.441
2.188
38.239
0.190
-0.068
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
1
0
2013-10-23
1
1
2013-12-04
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2012-05-22
REL
REL
SYNTHETIC
sample
SYNTHETIC
sample
DC
1
n
1
DC
1
C
DG
2
n
2
DG
2
C
DG
3
n
3
DG
3
C
DA
4
n
4
DA
4
C
DG
5
n
5
DG
5
C
DG
6
n
6
DG
6
C
DC
7
n
7
DC
7
C
DC
8
n
8
DC
8
C
DA
9
n
9
DA
9
C
DG
10
n
10
DG
10
C
DG
11
n
11
DG
11
C
DG
12
n
12
DG
12
C
DG
13
n
13
DG
13
C
DC
14
n
14
DC
14
C
DC
15
n
15
DC
15
C
DC
16
n
16
DC
16
C
DC
17
n
17
DC
17
C
DC
18
n
18
DC
18
C
DG
19
n
19
DG
19
C
DG
20
n
20
DG
20
C
DC
21
n
21
DC
21
C
DC
22
n
22
DC
22
C
DT
23
n
23
DT
23
C
DC
24
n
24
DC
24
C
DT
25
n
25
DT
25
C
DG
26
n
26
DG
26
C
DG
1
n
1
DG
1
W
DC
2
n
2
DC
2
W
DA
3
n
3
DA
3
W
DG
4
n
4
DG
4
W
DA
5
n
5
DA
5
W
DG
6
n
6
DG
6
W
DG
7
n
7
DG
7
W
DC
8
n
8
DC
8
W
DC
9
n
9
DC
9
W
DG
10
n
10
DG
10
W
DG
11
n
11
DG
11
W
DG
12
n
12
DG
12
W
DG
13
n
13
DG
13
W
DG
14
n
14
DG
14
W
DC
15
n
15
DC
15
W
DC
16
n
16
DC
16
W
DC
17
n
17
DC
17
W
DC
18
n
18
DC
18
W
DT
19
n
19
DT
19
W
DG
20
n
20
DG
20
W
DG
21
n
21
DG
21
W
DC
22
n
22
DC
22
W
DC
23
n
23
DC
23
W
DT
24
n
24
DT
24
W
DC
25
n
25
DC
25
W
DC
26
n
26
DC
26
W
n
1
283
A
n
2
284
A
n
3
285
A
n
4
286
A
n
5
287
A
n
6
288
A
n
7
289
A
SER
290
n
8
SER
290
A
ASP
291
n
9
ASP
291
A
PHE
292
n
10
PHE
292
A
PRO
293
n
11
PRO
293
A
SER
294
n
12
SER
294
A
SER
295
n
13
SER
295
A
LEU
296
n
14
LEU
296
A
THR
297
n
15
THR
297
A
GLY
298
n
16
GLY
298
A
TYR
299
n
17
TYR
299
A
LEU
300
n
18
LEU
300
A
SER
301
n
19
SER
301
A
HIS
302
n
20
HIS
302
A
ALA
303
n
21
ALA
303
A
ILE
304
n
22
ILE
304
A
TYR
305
n
23
TYR
305
A
SER
306
n
24
SER
306
A
ASN
307
n
25
ASN
307
A
LYS
308
n
26
LYS
308
A
THR
309
n
27
THR
309
A
PHE
310
n
28
PHE
310
A
PRO
311
n
29
PRO
311
A
ALA
312
n
30
ALA
312
A
PHE
313
n
31
PHE
313
A
LEU
314
n
32
LEU
314
A
VAL
315
n
33
VAL
315
A
TYR
316
n
34
TYR
316
A
SER
317
n
35
SER
317
A
THR
318
n
36
THR
318
A
LYS
319
n
37
LYS
319
A
GLU
320
n
38
GLU
320
A
LYS
321
n
39
LYS
321
A
CYS
322
n
40
CYS
322
A
LYS
323
n
41
LYS
323
A
GLN
324
n
42
GLN
324
A
LEU
325
n
43
LEU
325
A
TYR
326
n
44
TYR
326
A
ASP
327
n
45
ASP
327
A
THR
328
n
46
THR
328
A
ILE
329
n
47
ILE
329
A
GLY
330
n
48
GLY
330
A
LYS
331
n
49
LYS
331
A
PHE
332
n
50
PHE
332
A
ARG
333
n
51
ARG
333
A
PRO
334
n
52
PRO
334
A
GLU
335
n
53
GLU
335
A
PHE
336
n
54
PHE
336
A
LYS
337
n
55
LYS
337
A
CYS
338
n
56
CYS
338
A
LEU
339
n
57
LEU
339
A
VAL
340
n
58
VAL
340
A
HIS
341
n
59
HIS
341
A
TYR
342
n
60
TYR
342
A
GLU
343
n
61
GLU
343
A
GLU
344
n
62
GLU
344
A
GLY
345
n
63
GLY
345
A
GLY
346
n
64
GLY
346
A
MET
347
n
65
MET
347
A
LEU
348
n
66
LEU
348
A
PHE
349
n
67
PHE
349
A
PHE
350
n
68
PHE
350
A
LEU
351
n
69
LEU
351
A
THR
352
n
70
THR
352
A
MET
353
n
71
MET
353
A
THR
354
n
72
THR
354
A
LYS
355
n
73
LYS
355
A
HIS
356
n
74
HIS
356
A
ARG
357
n
75
ARG
357
A
VAL
358
n
76
VAL
358
A
SER
359
n
77
SER
359
A
ALA
360
n
78
ALA
360
A
VAL
361
n
79
VAL
361
A
LYS
362
n
80
LYS
362
A
ASN
363
n
81
ASN
363
A
TYR
364
n
82
TYR
364
A
CYS
365
n
83
CYS
365
A
SER
366
n
84
SER
366
A
LYS
367
n
85
LYS
367
A
LEU
368
n
86
LEU
368
A
CYS
369
n
87
CYS
369
A
SER
370
n
88
SER
370
A
VAL
371
n
89
VAL
371
A
SER
372
n
90
SER
372
A
PHE
373
n
91
PHE
373
A
LEU
374
n
92
LEU
374
A
MET
375
n
93
MET
375
A
CYS
376
n
94
CYS
376
A
LYS
377
n
95
LYS
377
A
ALA
378
n
96
ALA
378
A
VAL
379
n
97
VAL
379
A
THR
380
n
98
THR
380
A
LYS
381
n
99
LYS
381
A
PRO
382
n
100
PRO
382
A
MET
383
n
101
MET
383
A
GLU
384
n
102
GLU
384
A
CYS
385
n
103
CYS
385
A
TYR
386
n
104
TYR
386
A
GLN
387
n
105
GLN
387
A
VAL
388
n
106
VAL
388
A
VAL
389
n
107
VAL
389
A
THR
390
n
108
THR
390
A
ALA
391
n
109
ALA
391
A
ALA
392
n
110
ALA
392
A
PRO
393
n
111
PRO
393
A
PHE
394
n
112
PHE
394
A
GLN
395
n
113
GLN
395
A
LEU
396
n
114
LEU
396
A
ILE
397
n
115
ILE
397
A
THR
398
n
116
THR
398
A
GLU
399
n
117
GLU
399
A
ASN
400
n
118
ASN
400
A
LYS
401
n
119
LYS
401
A
PRO
402
n
120
PRO
402
A
GLY
403
n
121
GLY
403
A
LEU
404
n
122
LEU
404
A
n
123
405
A
n
124
406
A
n
125
407
A
n
126
408
A
n
127
409
A
n
128
410
A
n
129
411
A
n
130
412
A
n
131
413
A
n
132
414
A
n
133
415
A
n
134
416
A
n
135
417
A
n
136
418
A
n
137
419
A
n
138
420
A
n
139
421
A
n
140
422
A
n
141
423
A
n
142
424
A
n
143
425
A
n
144
426
A
n
145
427
A
n
146
428
A
n
1
283
B
n
2
284
B
n
3
285
B
n
4
286
B
n
5
287
B
n
6
288
B
n
7
289
B
SER
290
n
8
SER
290
B
ASP
291
n
9
ASP
291
B
PHE
292
n
10
PHE
292
B
PRO
293
n
11
PRO
293
B
SER
294
n
12
SER
294
B
SER
295
n
13
SER
295
B
LEU
296
n
14
LEU
296
B
THR
297
n
15
THR
297
B
GLY
298
n
16
GLY
298
B
TYR
299
n
17
TYR
299
B
LEU
300
n
18
LEU
300
B
SER
301
n
19
SER
301
B
HIS
302
n
20
HIS
302
B
ALA
303
n
21
ALA
303
B
ILE
304
n
22
ILE
304
B
TYR
305
n
23
TYR
305
B
SER
306
n
24
SER
306
B
ASN
307
n
25
ASN
307
B
LYS
308
n
26
LYS
308
B
THR
309
n
27
THR
309
B
PHE
310
n
28
PHE
310
B
PRO
311
n
29
PRO
311
B
ALA
312
n
30
ALA
312
B
PHE
313
n
31
PHE
313
B
LEU
314
n
32
LEU
314
B
VAL
315
n
33
VAL
315
B
TYR
316
n
34
TYR
316
B
SER
317
n
35
SER
317
B
THR
318
n
36
THR
318
B
LYS
319
n
37
LYS
319
B
GLU
320
n
38
GLU
320
B
LYS
321
n
39
LYS
321
B
CYS
322
n
40
CYS
322
B
LYS
323
n
41
LYS
323
B
GLN
324
n
42
GLN
324
B
LEU
325
n
43
LEU
325
B
TYR
326
n
44
TYR
326
B
ASP
327
n
45
ASP
327
B
THR
328
n
46
THR
328
B
ILE
329
n
47
ILE
329
B
GLY
330
n
48
GLY
330
B
LYS
331
n
49
LYS
331
B
PHE
332
n
50
PHE
332
B
ARG
333
n
51
ARG
333
B
PRO
334
n
52
PRO
334
B
GLU
335
n
53
GLU
335
B
PHE
336
n
54
PHE
336
B
LYS
337
n
55
LYS
337
B
CYS
338
n
56
CYS
338
B
LEU
339
n
57
LEU
339
B
VAL
340
n
58
VAL
340
B
HIS
341
n
59
HIS
341
B
TYR
342
n
60
TYR
342
B
GLU
343
n
61
GLU
343
B
GLU
344
n
62
GLU
344
B
GLY
345
n
63
GLY
345
B
GLY
346
n
64
GLY
346
B
MET
347
n
65
MET
347
B
LEU
348
n
66
LEU
348
B
PHE
349
n
67
PHE
349
B
PHE
350
n
68
PHE
350
B
LEU
351
n
69
LEU
351
B
THR
352
n
70
THR
352
B
MET
353
n
71
MET
353
B
THR
354
n
72
THR
354
B
LYS
355
n
73
LYS
355
B
HIS
356
n
74
HIS
356
B
ARG
357
n
75
ARG
357
B
VAL
358
n
76
VAL
358
B
SER
359
n
77
SER
359
B
ALA
360
n
78
ALA
360
B
VAL
361
n
79
VAL
361
B
LYS
362
n
80
LYS
362
B
ASN
363
n
81
ASN
363
B
TYR
364
n
82
TYR
364
B
CYS
365
n
83
CYS
365
B
SER
366
n
84
SER
366
B
LYS
367
n
85
LYS
367
B
LEU
368
n
86
LEU
368
B
CYS
369
n
87
CYS
369
B
SER
370
n
88
SER
370
B
VAL
371
n
89
VAL
371
B
SER
372
n
90
SER
372
B
PHE
373
n
91
PHE
373
B
LEU
374
n
92
LEU
374
B
MET
375
n
93
MET
375
B
CYS
376
n
94
CYS
376
B
LYS
377
n
95
LYS
377
B
ALA
378
n
96
ALA
378
B
VAL
379
n
97
VAL
379
B
THR
380
n
98
THR
380
B
LYS
381
n
99
LYS
381
B
PRO
382
n
100
PRO
382
B
MET
383
n
101
MET
383
B
GLU
384
n
102
GLU
384
B
CYS
385
n
103
CYS
385
B
TYR
386
n
104
TYR
386
B
GLN
387
n
105
GLN
387
B
VAL
388
n
106
VAL
388
B
VAL
389
n
107
VAL
389
B
THR
390
n
108
THR
390
B
ALA
391
n
109
ALA
391
B
ALA
392
n
110
ALA
392
B
PRO
393
n
111
PRO
393
B
PHE
394
n
112
PHE
394
B
GLN
395
n
113
GLN
395
B
LEU
396
n
114
LEU
396
B
ILE
397
n
115
ILE
397
B
THR
398
n
116
THR
398
B
GLU
399
n
117
GLU
399
B
ASN
400
n
118
ASN
400
B
LYS
401
n
119
LYS
401
B
PRO
402
n
120
PRO
402
B
GLY
403
n
121
GLY
403
B
n
122
404
B
n
123
405
B
n
124
406
B
n
125
407
B
n
126
408
B
n
127
409
B
n
128
410
B
n
129
411
B
n
130
412
B
n
131
413
B
n
132
414
B
n
133
415
B
n
134
416
B
n
135
417
B
n
136
418
B
n
137
419
B
n
138
420
B
n
139
421
B
n
140
422
B
n
141
423
B
n
142
424
B
n
143
425
B
n
144
426
B
n
145
427
B
n
146
428
B
n
1
283
E
n
2
284
E
n
3
285
E
n
4
286
E
n
5
287
E
n
6
288
E
n
7
289
E
SER
290
n
8
SER
290
E
ASP
291
n
9
ASP
291
E
PHE
292
n
10
PHE
292
E
PRO
293
n
11
PRO
293
E
SER
294
n
12
SER
294
E
SER
295
n
13
SER
295
E
LEU
296
n
14
LEU
296
E
THR
297
n
15
THR
297
E
GLY
298
n
16
GLY
298
E
TYR
299
n
17
TYR
299
E
LEU
300
n
18
LEU
300
E
SER
301
n
19
SER
301
E
HIS
302
n
20
HIS
302
E
ALA
303
n
21
ALA
303
E
ILE
304
n
22
ILE
304
E
TYR
305
n
23
TYR
305
E
SER
306
n
24
SER
306
E
ASN
307
n
25
ASN
307
E
LYS
308
n
26
LYS
308
E
THR
309
n
27
THR
309
E
PHE
310
n
28
PHE
310
E
PRO
311
n
29
PRO
311
E
ALA
312
n
30
ALA
312
E
PHE
313
n
31
PHE
313
E
LEU
314
n
32
LEU
314
E
VAL
315
n
33
VAL
315
E
TYR
316
n
34
TYR
316
E
SER
317
n
35
SER
317
E
THR
318
n
36
THR
318
E
LYS
319
n
37
LYS
319
E
GLU
320
n
38
GLU
320
E
LYS
321
n
39
LYS
321
E
CYS
322
n
40
CYS
322
E
LYS
323
n
41
LYS
323
E
GLN
324
n
42
GLN
324
E
LEU
325
n
43
LEU
325
E
TYR
326
n
44
TYR
326
E
ASP
327
n
45
ASP
327
E
THR
328
n
46
THR
328
E
ILE
329
n
47
ILE
329
E
GLY
330
n
48
GLY
330
E
LYS
331
n
49
LYS
331
E
PHE
332
n
50
PHE
332
E
ARG
333
n
51
ARG
333
E
PRO
334
n
52
PRO
334
E
GLU
335
n
53
GLU
335
E
PHE
336
n
54
PHE
336
E
LYS
337
n
55
LYS
337
E
CYS
338
n
56
CYS
338
E
LEU
339
n
57
LEU
339
E
VAL
340
n
58
VAL
340
E
HIS
341
n
59
HIS
341
E
TYR
342
n
60
TYR
342
E
GLU
343
n
61
GLU
343
E
GLU
344
n
62
GLU
344
E
GLY
345
n
63
GLY
345
E
GLY
346
n
64
GLY
346
E
MET
347
n
65
MET
347
E
LEU
348
n
66
LEU
348
E
PHE
349
n
67
PHE
349
E
PHE
350
n
68
PHE
350
E
LEU
351
n
69
LEU
351
E
THR
352
n
70
THR
352
E
MET
353
n
71
MET
353
E
THR
354
n
72
THR
354
E
LYS
355
n
73
LYS
355
E
HIS
356
n
74
HIS
356
E
ARG
357
n
75
ARG
357
E
VAL
358
n
76
VAL
358
E
SER
359
n
77
SER
359
E
ALA
360
n
78
ALA
360
E
VAL
361
n
79
VAL
361
E
LYS
362
n
80
LYS
362
E
ASN
363
n
81
ASN
363
E
TYR
364
n
82
TYR
364
E
CYS
365
n
83
CYS
365
E
SER
366
n
84
SER
366
E
LYS
367
n
85
LYS
367
E
LEU
368
n
86
LEU
368
E
CYS
369
n
87
CYS
369
E
SER
370
n
88
SER
370
E
VAL
371
n
89
VAL
371
E
SER
372
n
90
SER
372
E
PHE
373
n
91
PHE
373
E
LEU
374
n
92
LEU
374
E
MET
375
n
93
MET
375
E
CYS
376
n
94
CYS
376
E
LYS
377
n
95
LYS
377
E
ALA
378
n
96
ALA
378
E
VAL
379
n
97
VAL
379
E
THR
380
n
98
THR
380
E
LYS
381
n
99
LYS
381
E
PRO
382
n
100
PRO
382
E
MET
383
n
101
MET
383
E
GLU
384
n
102
GLU
384
E
CYS
385
n
103
CYS
385
E
TYR
386
n
104
TYR
386
E
GLN
387
n
105
GLN
387
E
VAL
388
n
106
VAL
388
E
VAL
389
n
107
VAL
389
E
THR
390
n
108
THR
390
E
ALA
391
n
109
ALA
391
E
ALA
392
n
110
ALA
392
E
PRO
393
n
111
PRO
393
E
PHE
394
n
112
PHE
394
E
GLN
395
n
113
GLN
395
E
LEU
396
n
114
LEU
396
E
ILE
397
n
115
ILE
397
E
THR
398
n
116
THR
398
E
GLU
399
n
117
GLU
399
E
ASN
400
n
118
ASN
400
E
LYS
401
n
119
LYS
401
E
PRO
402
n
120
PRO
402
E
GLY
403
n
121
GLY
403
E
n
122
404
E
n
123
405
E
n
124
406
E
n
125
407
E
n
126
408
E
n
127
409
E
n
128
410
E
n
129
411
E
n
130
412
E
n
131
413
E
n
132
414
E
n
133
415
E
n
134
416
E
n
135
417
E
n
136
418
E
n
137
419
E
n
138
420
E
n
139
421
E
n
140
422
E
n
141
423
E
n
142
424
E
n
143
425
E
n
144
426
E
n
145
427
E
n
146
428
E
6.4070
0.6778
-1.3288
2.5401
0.2224
3.8843
0.2055
-0.2263
0.0282
0.4055
-0.1667
-0.4006
0.0738
0.5090
0.0001
0.7066
0.0967
-0.0179
0.6865
-0.0404
0.7055
refined
-12.9371
114.6010
-9.6727
X-RAY DIFFRACTION
4.8366
-0.5066
0.5897
3.4522
-0.2671
2.2714
-0.0672
-0.0346
0.0829
-0.5713
0.1503
-0.3281
0.0891
0.1009
0.0002
0.7638
-0.0418
0.0313
0.6417
-0.0454
0.6900
refined
-15.9959
77.4075
-18.1851
X-RAY DIFFRACTION
4.2269
-1.5849
-1.9674
4.5626
0.1162
7.2176
-0.1386
0.0524
-0.2659
-0.3853
0.0815
0.2084
-0.0843
-0.3358
0.0003
0.7045
0.1762
-0.0526
0.6704
-0.0020
0.7420
refined
-52.7370
138.0149
0.7183
X-RAY DIFFRACTION
0.6526
-0.6592
0.2450
1.3004
1.9063
1.2489
0.2539
0.3315
-0.1043
0.3556
-0.2666
0.6236
0.0404
-0.2963
-0.0002
0.8336
0.1504
0.0774
1.0864
0.0055
1.0285
refined
-36.1699
108.9848
-15.0995
X-RAY DIFFRACTION
1.4689
-0.9128
-0.6173
0.0973
0.5083
1.0487
0.2379
0.2808
-0.1298
-0.0689
-0.4559
-0.0492
-0.2330
-0.3874
-0.0003
0.9941
0.0854
0.0283
1.0808
-0.1228
0.8857
refined
-37.2462
112.2153
-14.0229
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A)
X-RAY DIFFRACTION
2
(chain B)
X-RAY DIFFRACTION
3
(chain E)
X-RAY DIFFRACTION
4
(chain C)
X-RAY DIFFRACTION
5
(chain W)
author_and_software_defined_assembly
PISA
5
pentameric
6710
-62
24050
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
377
C
O
LYS
95
A
N
LEU
314
C
N
LEU
32
A
N
PHE
310
C
N
PHE
28
A
O
HIS
356
C
O
HIS
74
A
O
MET
347
C
O
MET
65
A
N
VAL
340
C
N
VAL
58
A
N
LEU
339
C
N
LEU
57
A
O
ILE
397
C
O
ILE
115
B
N
SER
301
D
N
SER
19
B
O
ALA
378
D
O
ALA
96
B
O
MET
375
D
O
MET
93
B
N
TYR
316
D
N
TYR
34
B
N
PHE
310
D
N
PHE
28
B
O
HIS
356
D
O
HIS
74
B
O
MET
347
D
O
MET
65
B
N
VAL
340
D
N
VAL
58
B
N
HIS
341
D
N
HIS
59
B
O
GLN
395
D
O
GLN
113
E
N
SER
301
E
N
SER
19
E
O
ALA
378
E
O
ALA
96
E
O
VAL
379
E
O
VAL
97
E
N
ALA
312
E
N
ALA
30
E
N
PHE
310
E
N
PHE
28
E
O
HIS
356
E
O
HIS
74
E
O
LEU
351
E
O
LEU
69
E
N
GLU
335
E
N
GLU
53
E
N
HIS
341
E
N
HIS
59
E
O
GLN
395
E
O
GLN
113
1
A
CD1
LEU
404
C
CD1
LEU
122
1
Y
1
A
CD2
LEU
404
C
CD2
LEU
122
1
Y
1
A
MET
283
C
MET
1
1
Y
1
A
HIS
284
C
HIS
2
1
Y
1
A
HIS
285
C
HIS
3
1
Y
1
A
HIS
286
C
HIS
4
1
Y
1
A
HIS
287
C
HIS
5
1
Y
1
A
HIS
288
C
HIS
6
1
Y
1
A
HIS
289
C
HIS
7
1
Y
1
A
HIS
405
C
HIS
123
1
Y
1
A
GLN
406
C
GLN
124
1
Y
1
A
PHE
407
C
PHE
125
1
Y
1
A
GLU
408
C
GLU
126
1
Y
1
A
PHE
409
C
PHE
127
1
Y
1
A
THR
410
C
THR
128
1
Y
1
A
ASP
411
C
ASP
129
1
Y
1
A
GLU
412
C
GLU
130
1
Y
1
A
PRO
413
C
PRO
131
1
Y
1
A
GLU
414
C
GLU
132
1
Y
1
A
GLU
415
C
GLU
133
1
Y
1
A
GLN
416
C
GLN
134
1
Y
1
A
LYS
417
C
LYS
135
1
Y
1
A
ALA
418
C
ALA
136
1
Y
1
A
VAL
419
C
VAL
137
1
Y
1
A
ASP
420
C
ASP
138
1
Y
1
A
GLY
421
C
GLY
139
1
Y
1
A
SER
422
C
SER
140
1
Y
1
A
HIS
423
C
HIS
141
1
Y
1
A
HIS
424
C
HIS
142
1
Y
1
A
HIS
425
C
HIS
143
1
Y
1
A
HIS
426
C
HIS
144
1
Y
1
A
HIS
427
C
HIS
145
1
Y
1
A
HIS
428
C
HIS
146
1
Y
1
B
MET
283
D
MET
1
1
Y
1
B
HIS
284
D
HIS
2
1
Y
1
B
HIS
285
D
HIS
3
1
Y
1
B
HIS
286
D
HIS
4
1
Y
1
B
HIS
287
D
HIS
5
1
Y
1
B
HIS
288
D
HIS
6
1
Y
1
B
HIS
289
D
HIS
7
1
Y
1
B
LEU
404
D
LEU
122
1
Y
1
B
HIS
405
D
HIS
123
1
Y
1
B
GLN
406
D
GLN
124
1
Y
1
B
PHE
407
D
PHE
125
1
Y
1
B
GLU
408
D
GLU
126
1
Y
1
B
PHE
409
D
PHE
127
1
Y
1
B
THR
410
D
THR
128
1
Y
1
B
ASP
411
D
ASP
129
1
Y
1
B
GLU
412
D
GLU
130
1
Y
1
B
PRO
413
D
PRO
131
1
Y
1
B
GLU
414
D
GLU
132
1
Y
1
B
GLU
415
D
GLU
133
1
Y
1
B
GLN
416
D
GLN
134
1
Y
1
B
LYS
417
D
LYS
135
1
Y
1
B
ALA
418
D
ALA
136
1
Y
1
B
VAL
419
D
VAL
137
1
Y
1
B
ASP
420
D
ASP
138
1
Y
1
B
GLY
421
D
GLY
139
1
Y
1
B
SER
422
D
SER
140
1
Y
1
B
HIS
423
D
HIS
141
1
Y
1
B
HIS
424
D
HIS
142
1
Y
1
B
HIS
425
D
HIS
143
1
Y
1
B
HIS
426
D
HIS
144
1
Y
1
B
HIS
427
D
HIS
145
1
Y
1
B
HIS
428
D
HIS
146
1
Y
1
E
MET
283
E
MET
1
1
Y
1
E
HIS
284
E
HIS
2
1
Y
1
E
HIS
285
E
HIS
3
1
Y
1
E
HIS
286
E
HIS
4
1
Y
1
E
HIS
287
E
HIS
5
1
Y
1
E
HIS
288
E
HIS
6
1
Y
1
E
HIS
289
E
HIS
7
1
Y
1
E
LEU
404
E
LEU
122
1
Y
1
E
HIS
405
E
HIS
123
1
Y
1
E
GLN
406
E
GLN
124
1
Y
1
E
PHE
407
E
PHE
125
1
Y
1
E
GLU
408
E
GLU
126
1
Y
1
E
PHE
409
E
PHE
127
1
Y
1
E
THR
410
E
THR
128
1
Y
1
E
ASP
411
E
ASP
129
1
Y
1
E
GLU
412
E
GLU
130
1
Y
1
E
PRO
413
E
PRO
131
1
Y
1
E
GLU
414
E
GLU
132
1
Y
1
E
GLU
415
E
GLU
133
1
Y
1
E
GLN
416
E
GLN
134
1
Y
1
E
LYS
417
E
LYS
135
1
Y
1
E
ALA
418
E
ALA
136
1
Y
1
E
VAL
419
E
VAL
137
1
Y
1
E
ASP
420
E
ASP
138
1
Y
1
E
GLY
421
E
GLY
139
1
Y
1
E
SER
422
E
SER
140
1
Y
1
E
HIS
423
E
HIS
141
1
Y
1
E
HIS
424
E
HIS
142
1
Y
1
E
HIS
425
E
HIS
143
1
Y
1
E
HIS
426
E
HIS
144
1
Y
1
E
HIS
427
E
HIS
145
1
Y
1
E
HIS
428
E
HIS
146
1
Y
1
C
E
N4
O
DC
ASN
21
307
2.19
1
-6.68
0.80
102.40
95.72
C
C
C
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
1
2.57
0.30
108.30
110.87
C
C
C
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
2.71
0.30
108.30
111.01
C
C
C
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
2.52
0.30
108.30
110.82
C
C
C
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
2.24
0.30
108.30
110.54
C
C
C
O4'
C1'
N1
DT
DT
DT
23
23
23
N
1
3.94
0.30
108.30
112.24
C
C
C
O4'
C1'
N1
DC
DC
DC
24
24
24
N
1
-6.61
1.00
110.10
103.49
W
W
W
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
1
-7.39
0.80
102.40
95.01
W
W
W
C3'
C2'
C1'
DG
DG
DG
6
6
6
N
1
4.90
0.30
108.30
113.20
W
W
W
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
3.35
0.30
108.30
111.65
W
W
W
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
-5.98
0.80
102.40
96.42
W
W
W
C3'
C2'
C1'
DG
DG
DG
13
13
13
N
1
3.06
0.30
108.30
111.36
W
W
W
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
2.02
0.30
108.30
110.32
W
W
W
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
-4.93
0.80
102.40
97.47
W
W
W
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
1
1.94
0.30
108.30
110.24
W
W
W
O4'
C1'
N1
DT
DT
DT
24
24
24
N
1
3.00
0.30
108.30
111.30
W
W
W
O4'
C1'
N1
DC
DC
DC
25
25
25
N
1
13.86
1.50
119.30
133.16
A
A
A
C
N
CA
LYS
PRO
PRO
401
402
402
Y
1
A
ASP
291
-105.08
-157.46
1
A
THR
297
-60.09
26.73
1
A
ILE
304
-149.40
-39.02
1
A
ILE
329
-52.94
-3.01
1
A
ARG
333
56.30
71.11
1
A
TYR
342
-162.72
80.62
1
A
GLU
343
59.37
88.33
1
A
MET
353
-71.57
-75.30
1
A
LYS
367
-96.41
43.23
1
A
LEU
368
-120.95
-82.62
1
A
CYS
369
-72.52
-99.64
1
A
SER
370
-178.66
-63.48
1
A
VAL
371
-170.03
-29.01
1
A
SER
372
-138.06
-148.68
1
A
PRO
393
-100.98
42.93
1
A
LYS
401
55.37
97.39
1
B
HIS
302
-97.76
35.97
1
B
ILE
304
-160.04
-22.85
1
B
SER
317
-125.39
-135.30
1
B
ILE
329
-79.75
36.20
1
B
LYS
331
-69.57
2.39
1
B
ARG
333
55.81
76.25
1
B
TYR
342
-161.37
-51.39
1
B
GLU
343
-174.80
106.17
1
B
GLU
344
62.60
-30.37
1
B
VAL
371
-124.38
-146.43
1
B
SER
372
-100.14
-94.55
1
B
ILE
397
-101.04
-61.46
1
B
ASN
400
-81.18
-75.39
1
E
ASN
307
-97.23
50.38
1
E
SER
317
-155.15
-157.84
1
E
THR
328
-92.42
31.06
1
E
LYS
331
-160.00
-28.39
1
E
CYS
338
-157.91
86.57
1
E
TYR
342
-163.09
98.09
1
E
GLU
343
48.69
76.89
1
E
LYS
367
-133.86
-58.36
1
E
SER
370
-161.88
-44.04
1
E
VAL
371
64.02
80.85
1
E
SER
372
77.93
165.81
1
E
LEU
396
-64.96
99.58
23.8896
-0.0000
-0.0000
-7.1107
0.0000
-16.7789
0.2444
0.2218
0.2229
3.790
46.931
529
11080
4.77
99.89
0.89
random
1
0.0
MOLECULAR REPLACEMENT
26.24
1.11
1.30
ML
FLAT BULK SOLVENT MODEL
38.572
0.285
3.790
46.931
0
3787
0
1060
2727
0.005
3993
1.035
5612
21.759
1546
0.061
624
0.006
518
0.3136
0.2810
4.1712
120
2579
100.00
0.2232
0.2081
4.7743
122
2615
100.00
0.2365
0.1984
6.0131
139
2624
100.00
0.2357
0.2200
46.9344
148
2733
100.00
3.79
117.46
4FB3
11102
11084
0.0
0.0
1
99.8
refinement
PHENIX
(phenix.refine: 1.7.2_869)
Polyomavirus T-ag binds symmetrical repeats at the viral origin in an asymmetrical manner
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
A
THR
318
C
THR
36
HELX_P
A
ASP
327
C
ASP
45
1
1
10
A
THR
328
C
THR
46
HELX_P
A
PHE
332
C
PHE
50
5
2
5
A
VAL
358
C
VAL
76
HELX_P
A
SER
366
C
SER
84
1
3
9
A
LYS
381
C
LYS
99
HELX_P
A
VAL
389
C
VAL
107
1
4
9
B
THR
318
D
THR
36
HELX_P
B
ASP
327
D
ASP
45
1
5
10
B
THR
328
D
THR
46
HELX_P
B
PHE
332
D
PHE
50
5
6
5
B
VAL
358
D
VAL
76
HELX_P
B
CYS
369
D
CYS
87
1
7
12
B
LYS
381
D
LYS
99
HELX_P
B
THR
390
D
THR
108
1
8
10
E
THR
318
E
THR
36
HELX_P
E
ASP
327
E
ASP
45
1
9
10
E
VAL
358
E
VAL
76
HELX_P
E
SER
366
E
SER
84
1
10
9
E
LYS
381
E
LYS
99
HELX_P
E
VAL
389
E
VAL
107
1
11
9
hydrog
WATSON-CRICK
C
DG
2
A
N1
DG
2
1_555
W
DC
26
B
N3
DC
26
1_555
hydrog
WATSON-CRICK
C
DG
2
A
N2
DG
2
1_555
W
DC
26
B
O2
DC
26
1_555
hydrog
WATSON-CRICK
C
DG
2
A
O6
DG
2
1_555
W
DC
26
B
N4
DC
26
1_555
hydrog
DG-DC PAIR
C
DG
3
A
N1
DG
3
1_555
W
DC
25
B
N3
DC
25
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N1
DA
4
1_555
W
DT
24
B
N3
DT
24
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N6
DA
4
1_555
W
DT
24
B
O4
DT
24
1_555
hydrog
WATSON-CRICK
C
DG
5
A
N1
DG
5
1_555
W
DC
23
B
N3
DC
23
1_555
hydrog
WATSON-CRICK
C
DG
5
A
N2
DG
5
1_555
W
DC
23
B
O2
DC
23
1_555
hydrog
WATSON-CRICK
C
DG
5
A
O6
DG
5
1_555
W
DC
23
B
N4
DC
23
1_555
hydrog
WATSON-CRICK
C
DG
6
A
N1
DG
6
1_555
W
DC
22
B
N3
DC
22
1_555
hydrog
WATSON-CRICK
C
DG
6
A
N2
DG
6
1_555
W
DC
22
B
O2
DC
22
1_555
hydrog
WATSON-CRICK
C
DG
6
A
O6
DG
6
1_555
W
DC
22
B
N4
DC
22
1_555
hydrog
WATSON-CRICK
C
DC
7
A
N3
DC
7
1_555
W
DG
21
B
N1
DG
21
1_555
hydrog
WATSON-CRICK
C
DC
7
A
N4
DC
7
1_555
W
DG
21
B
O6
DG
21
1_555
hydrog
WATSON-CRICK
C
DC
7
A
O2
DC
7
1_555
W
DG
21
B
N2
DG
21
1_555
hydrog
WATSON-CRICK
C
DC
8
A
N3
DC
8
1_555
W
DG
20
B
N1
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
8
A
N4
DC
8
1_555
W
DG
20
B
O6
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
8
A
O2
DC
8
1_555
W
DG
20
B
N2
DG
20
1_555
hydrog
WATSON-CRICK
C
DA
9
A
N1
DA
9
1_555
W
DT
19
B
N3
DT
19
1_555
hydrog
WATSON-CRICK
C
DA
9
A
N6
DA
9
1_555
W
DT
19
B
O4
DT
19
1_555
hydrog
DG-DC PAIR
C
DG
10
A
N1
DG
10
1_555
W
DC
18
B
N3
DC
18
1_555
hydrog
WATSON-CRICK
C
DG
11
A
N1
DG
11
1_555
W
DC
17
B
N3
DC
17
1_555
hydrog
WATSON-CRICK
C
DG
11
A
N2
DG
11
1_555
W
DC
17
B
O2
DC
17
1_555
hydrog
WATSON-CRICK
C
DG
11
A
O6
DG
11
1_555
W
DC
17
B
N4
DC
17
1_555
hydrog
WATSON-CRICK
C
DG
12
A
N1
DG
12
1_555
W
DC
16
B
N3
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
12
A
N2
DG
12
1_555
W
DC
16
B
O2
DC
16
1_555
hydrog
WATSON-CRICK
C
DG
12
A
O6
DG
12
1_555
W
DC
16
B
N4
DC
16
1_555
hydrog
DG-DC PAIR
C
DG
13
A
N1
DG
13
1_555
W
DC
15
B
N3
DC
15
1_555
hydrog
DG-DC PAIR
C
DG
13
A
N1
DG
13
1_555
W
DC
16
B
O2
DC
16
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N3
DC
14
1_555
W
DG
14
B
N1
DG
14
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N4
DC
14
1_555
W
DG
14
B
O6
DG
14
1_555
hydrog
WATSON-CRICK
C
DC
14
A
O2
DC
14
1_555
W
DG
14
B
N2
DG
14
1_555
hydrog
WATSON-CRICK
C
DC
15
A
N3
DC
15
1_555
W
DG
13
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
15
A
N4
DC
15
1_555
W
DG
13
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
15
A
O2
DC
15
1_555
W
DG
13
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
16
A
N3
DC
16
1_555
W
DG
12
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
C
DC
16
A
N4
DC
16
1_555
W
DG
12
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
C
DC
16
A
O2
DC
16
1_555
W
DG
12
B
N2
DG
12
1_555
hydrog
DC-DG PAIR
C
DC
16
A
O2
DC
16
1_555
W
DG
13
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
17
A
N3
DC
17
1_555
W
DG
11
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
17
A
N4
DC
17
1_555
W
DG
11
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
17
A
O2
DC
17
1_555
W
DG
11
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
18
A
N3
DC
18
1_555
W
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
18
A
N4
DC
18
1_555
W
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
18
A
O2
DC
18
1_555
W
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DG
19
A
N1
DG
19
1_555
W
DC
9
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
19
A
N2
DG
19
1_555
W
DC
9
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
19
A
O6
DG
19
1_555
W
DC
9
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
20
A
N1
DG
20
1_555
W
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
20
A
N2
DG
20
1_555
W
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
20
A
O6
DG
20
1_555
W
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
C
DC
21
A
N3
DC
21
1_555
W
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
21
A
N4
DC
21
1_555
W
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
21
A
O2
DC
21
1_555
W
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
22
A
N3
DC
22
1_555
W
DG
6
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
22
A
N4
DC
22
1_555
W
DG
6
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
22
A
O2
DC
22
1_555
W
DG
6
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
C
DT
23
A
N3
DT
23
1_555
W
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
C
DT
23
A
O4
DT
23
1_555
W
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
C
DC
24
A
N3
DC
24
1_555
W
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
24
A
N4
DC
24
1_555
W
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
24
A
O2
DC
24
1_555
W
DG
4
B
N2
DG
4
1_555
hydrog
DT-DC MISPAIR
C
DT
25
A
O4
DT
25
1_555
W
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
C
DT
25
A
N3
DT
25
1_555
W
DA
3
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
25
A
O4
DT
25
1_555
W
DA
3
B
N6
DA
3
1_555
hydrog
DG-DC PAIR
C
DG
26
A
N1
DG
26
1_555
W
DC
2
B
N3
DC
2
1_555
DNA BINDING PROTEIN/DNA
origin binding domain, protein-dna complex, replication, DNA binding protein-DNA complex
A
SER
370
C
SER
88
1
A
VAL
371
C
VAL
89
-20.25
A
ALA
392
C
ALA
110
1
A
PRO
393
C
PRO
111
-4.04
B
SER
370
D
SER
88
1
B
VAL
371
D
VAL
89
-2.63
B
ALA
392
D
ALA
110
1
B
PRO
393
D
PRO
111
0.42
E
SER
370
E
SER
88
1
E
VAL
371
E
VAL
89
22.28
E
ALA
392
E
ALA
110
1
E
PRO
393
E
PRO
111
2.06
LT_POVM3
UNP
3
290
P03074
SDFPSSLTGYLSHAIYSNKTFPAFLVYSTKEKCKQLYDTIGKFRPEFKCLVHYEEGGMLFFLTMTKHRVSAVKNYCSKLC
SVSFLMCKAVTKPMECYQVVTAAPFQLITENKPGLHQFEFTDEPEEQKAVD
4FB3
PDB
2
4FB3
GCAGAGGCCGGGGGCCCCTGGCCTCC
4FB3
PDB
1
4FB3
CGGAGGCCAGGGGCCCCCGGCCTCTG
290
420
4FB3
290
420
P03074
A
1
8
138
290
420
4FB3
290
420
P03074
B
1
8
138
290
420
4FB3
290
420
P03074
E
1
8
138
1
26
4FB3
1
26
4FB3
W
2
1
26
1
26
4FB3
1
26
4FB3
C
3
1
26
1
expression tag
MET
283
4FB3
A
P03074
UNP
1
1
expression tag
HIS
284
4FB3
A
P03074
UNP
2
1
expression tag
HIS
285
4FB3
A
P03074
UNP
3
1
expression tag
HIS
286
4FB3
A
P03074
UNP
4
1
expression tag
HIS
287
4FB3
A
P03074
UNP
5
1
expression tag
HIS
288
4FB3
A
P03074
UNP
6
1
expression tag
HIS
289
4FB3
A
P03074
UNP
7
1
expression tag
GLY
421
4FB3
A
P03074
UNP
139
1
expression tag
SER
422
4FB3
A
P03074
UNP
140
1
expression tag
HIS
423
4FB3
A
P03074
UNP
141
1
expression tag
HIS
424
4FB3
A
P03074
UNP
142
1
expression tag
HIS
425
4FB3
A
P03074
UNP
143
1
expression tag
HIS
426
4FB3
A
P03074
UNP
144
1
expression tag
HIS
427
4FB3
A
P03074
UNP
145
1
expression tag
HIS
428
4FB3
A
P03074
UNP
146
2
expression tag
MET
283
4FB3
B
P03074
UNP
1
2
expression tag
HIS
284
4FB3
B
P03074
UNP
2
2
expression tag
HIS
285
4FB3
B
P03074
UNP
3
2
expression tag
HIS
286
4FB3
B
P03074
UNP
4
2
expression tag
HIS
287
4FB3
B
P03074
UNP
5
2
expression tag
HIS
288
4FB3
B
P03074
UNP
6
2
expression tag
HIS
289
4FB3
B
P03074
UNP
7
2
expression tag
GLY
421
4FB3
B
P03074
UNP
139
2
expression tag
SER
422
4FB3
B
P03074
UNP
140
2
expression tag
HIS
423
4FB3
B
P03074
UNP
141
2
expression tag
HIS
424
4FB3
B
P03074
UNP
142
2
expression tag
HIS
425
4FB3
B
P03074
UNP
143
2
expression tag
HIS
426
4FB3
B
P03074
UNP
144
2
expression tag
HIS
427
4FB3
B
P03074
UNP
145
2
expression tag
HIS
428
4FB3
B
P03074
UNP
146
3
expression tag
MET
283
4FB3
E
P03074
UNP
1
3
expression tag
HIS
284
4FB3
E
P03074
UNP
2
3
expression tag
HIS
285
4FB3
E
P03074
UNP
3
3
expression tag
HIS
286
4FB3
E
P03074
UNP
4
3
expression tag
HIS
287
4FB3
E
P03074
UNP
5
3
expression tag
HIS
288
4FB3
E
P03074
UNP
6
3
expression tag
HIS
289
4FB3
E
P03074
UNP
7
3
expression tag
GLY
421
4FB3
E
P03074
UNP
139
3
expression tag
SER
422
4FB3
E
P03074
UNP
140
3
expression tag
HIS
423
4FB3
E
P03074
UNP
141
3
expression tag
HIS
424
4FB3
E
P03074
UNP
142
3
expression tag
HIS
425
4FB3
E
P03074
UNP
143
3
expression tag
HIS
426
4FB3
E
P03074
UNP
144
3
expression tag
HIS
427
4FB3
E
P03074
UNP
145
3
expression tag
HIS
428
4FB3
E
P03074
UNP
146
5
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
CYS
376
C
CYS
94
A
ALA
378
C
ALA
96
A
THR
309
C
THR
27
A
SER
317
C
SER
35
A
GLY
346
C
GLY
64
A
ARG
357
C
ARG
75
A
PRO
334
C
PRO
52
A
HIS
341
C
HIS
59
A
GLN
395
C
GLN
113
A
GLU
399
C
GLU
117
B
LEU
300
D
LEU
18
B
SER
301
D
SER
19
B
MET
375
D
MET
93
B
VAL
379
D
VAL
97
B
THR
309
D
THR
27
B
TYR
316
D
TYR
34
B
GLY
346
D
GLY
64
B
ARG
357
D
ARG
75
B
PRO
334
D
PRO
52
B
HIS
341
D
HIS
59
B
GLN
395
D
GLN
113
B
GLU
399
D
GLU
117
E
LEU
300
E
LEU
18
E
SER
301
E
SER
19
E
LEU
374
E
LEU
92
E
VAL
379
E
VAL
97
E
THR
309
E
THR
27
E
SER
317
E
SER
35
E
GLY
345
E
GLY
63
E
ARG
357
E
ARG
75
E
PRO
334
E
PRO
52
E
TYR
342
E
TYR
60
E
GLN
395
E
GLN
113
E
GLU
399
E
GLU
117
20
C 2 2 21