0.009213 0.000000 0.002228 -0.000000 0.024904 0.000000 0.000000 -0.000000 0.018805 0.00000 0.00000 0.00000 Minasov, G. Halavaty, A. Shuvalova, L. Dubrovska, I. Winsor, J. Papazisi, L. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 103.60 90.00 108.542 40.155 54.710 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing TO BE PUBLISHED 0353 1.9 Angstrom Crystal Structure of 3-deoxy-manno-octulosonate Cytidylyltransferase (kdsB) from Acinetobacter baumannii without His-Tag Bound to the Active Site. 10.2210/pdb4fcu/pdb pdb_00004fcu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Beryllium lenses CCD 2012-02-20 MARMOSAIC 300 mm CCD Diamond SINGLE WAVELENGTH M x-ray 1 0.97856 1.0 21-ID-G APS 0.97856 SYNCHROTRON APS BEAMLINE 21-ID-G 28426.471 3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 1 man polymer 18.015 water 166 nat water CMP-2-keto-3-deoxyoctulosonic acid synthase, CKS, CMP-KDO synthase no no MKHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLS EVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRAT IPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQAD LDRLNNMPVESFE MKHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLS EVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRAT IPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQAD LDRLNNMPVESFE A idp91095 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 17978 sample A1S_1557, kdsB 400667 Acinetobacter baumannii 511693 Escherichia coli BL21 plasmid pET19 1 2.04 39.66 VAPOR DIFFUSION, SITTING DROP 5.5 Protein: 7.4mG/mL, 0.25M Sodium cloride, Tris-HCl (pH 8.3), Screen: JCSG+ (H8), 0.2M Sodium chloride, 0.1M Bis-Tris pH 5.5, 25% (w/v) PEG 3350., VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 Center for Structural Genomics of Infectious Diseases CSGID NIAID, National Institute of Allergy and Infectious Diseases software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Refinement description Data collection Database references Refinement description 1 0 2012-06-20 1 1 2017-11-15 1 2 2023-09-13 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession 2.3 Angstrom Crystal Structure of 3-deoxy-manno-octulosonate Cytidylyltransferase (kdsB) from Acinetobacter baumannii. Y RCSB Y RCSB 2012-05-25 REL REL HOH water 3POL PDB experimental model HOH 1 2 HOH HOH 301 A HOH 2 2 HOH HOH 302 A HOH 3 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A HOH 5 2 HOH HOH 305 A HOH 6 2 HOH HOH 306 A HOH 7 2 HOH HOH 307 A HOH 8 2 HOH HOH 308 A HOH 9 2 HOH HOH 309 A HOH 10 2 HOH HOH 310 A HOH 11 2 HOH HOH 311 A HOH 12 2 HOH HOH 312 A HOH 13 2 HOH HOH 313 A HOH 14 2 HOH HOH 314 A HOH 15 2 HOH HOH 315 A HOH 16 2 HOH HOH 316 A HOH 17 2 HOH HOH 317 A HOH 18 2 HOH HOH 318 A HOH 19 2 HOH HOH 319 A HOH 20 2 HOH HOH 320 A HOH 21 2 HOH HOH 321 A HOH 22 2 HOH HOH 322 A HOH 23 2 HOH HOH 323 A HOH 24 2 HOH HOH 324 A HOH 25 2 HOH HOH 325 A HOH 27 2 HOH HOH 326 A HOH 28 2 HOH HOH 327 A HOH 29 2 HOH HOH 328 A HOH 30 2 HOH HOH 329 A HOH 31 2 HOH HOH 330 A HOH 32 2 HOH HOH 331 A HOH 33 2 HOH HOH 332 A HOH 34 2 HOH HOH 333 A HOH 35 2 HOH HOH 334 A HOH 36 2 HOH HOH 335 A HOH 37 2 HOH HOH 336 A HOH 38 2 HOH HOH 337 A HOH 39 2 HOH HOH 338 A HOH 40 2 HOH HOH 339 A HOH 41 2 HOH HOH 340 A HOH 42 2 HOH HOH 341 A HOH 43 2 HOH HOH 342 A HOH 44 2 HOH HOH 343 A HOH 45 2 HOH HOH 344 A HOH 46 2 HOH HOH 345 A HOH 47 2 HOH HOH 346 A HOH 48 2 HOH HOH 347 A HOH 49 2 HOH HOH 348 A HOH 50 2 HOH HOH 349 A HOH 51 2 HOH HOH 350 A HOH 52 2 HOH HOH 351 A HOH 53 2 HOH HOH 352 A HOH 54 2 HOH HOH 353 A HOH 55 2 HOH HOH 354 A HOH 56 2 HOH HOH 355 A HOH 57 2 HOH HOH 356 A HOH 58 2 HOH HOH 357 A HOH 59 2 HOH HOH 358 A HOH 60 2 HOH HOH 359 A HOH 61 2 HOH HOH 360 A HOH 62 2 HOH HOH 361 A HOH 63 2 HOH HOH 362 A HOH 65 2 HOH HOH 363 A HOH 66 2 HOH HOH 364 A HOH 67 2 HOH HOH 365 A HOH 68 2 HOH HOH 366 A HOH 70 2 HOH HOH 367 A HOH 71 2 HOH HOH 368 A HOH 72 2 HOH HOH 369 A HOH 73 2 HOH HOH 370 A HOH 74 2 HOH HOH 371 A HOH 75 2 HOH HOH 372 A HOH 76 2 HOH HOH 373 A HOH 77 2 HOH HOH 374 A HOH 78 2 HOH HOH 375 A HOH 79 2 HOH HOH 376 A HOH 80 2 HOH HOH 377 A HOH 81 2 HOH HOH 378 A HOH 83 2 HOH HOH 379 A HOH 84 2 HOH HOH 380 A HOH 85 2 HOH HOH 381 A HOH 86 2 HOH HOH 382 A HOH 87 2 HOH HOH 383 A HOH 88 2 HOH HOH 384 A HOH 89 2 HOH HOH 385 A HOH 90 2 HOH HOH 386 A HOH 91 2 HOH HOH 387 A HOH 93 2 HOH HOH 388 A HOH 94 2 HOH HOH 389 A HOH 95 2 HOH HOH 390 A HOH 96 2 HOH HOH 391 A HOH 97 2 HOH HOH 392 A HOH 98 2 HOH HOH 393 A HOH 99 2 HOH HOH 394 A HOH 100 2 HOH HOH 395 A HOH 101 2 HOH HOH 396 A HOH 102 2 HOH HOH 397 A HOH 103 2 HOH HOH 398 A HOH 104 2 HOH HOH 399 A HOH 105 2 HOH HOH 400 A HOH 106 2 HOH HOH 401 A HOH 107 2 HOH HOH 402 A HOH 108 2 HOH HOH 403 A HOH 109 2 HOH HOH 404 A HOH 110 2 HOH HOH 405 A HOH 111 2 HOH HOH 406 A HOH 112 2 HOH HOH 407 A HOH 113 2 HOH HOH 408 A HOH 114 2 HOH HOH 409 A HOH 115 2 HOH HOH 410 A HOH 116 2 HOH HOH 411 A HOH 117 2 HOH HOH 412 A HOH 118 2 HOH HOH 413 A HOH 119 2 HOH HOH 414 A HOH 120 2 HOH HOH 415 A HOH 121 2 HOH HOH 416 A HOH 122 2 HOH HOH 417 A HOH 123 2 HOH HOH 418 A HOH 124 2 HOH HOH 419 A HOH 125 2 HOH HOH 420 A HOH 126 2 HOH HOH 421 A HOH 127 2 HOH HOH 422 A HOH 128 2 HOH HOH 423 A HOH 129 2 HOH HOH 424 A HOH 130 2 HOH HOH 425 A HOH 131 2 HOH HOH 426 A HOH 132 2 HOH HOH 427 A HOH 133 2 HOH HOH 428 A HOH 134 2 HOH HOH 429 A HOH 136 2 HOH HOH 430 A HOH 137 2 HOH HOH 431 A HOH 138 2 HOH HOH 432 A HOH 139 2 HOH HOH 433 A HOH 140 2 HOH HOH 434 A HOH 141 2 HOH HOH 435 A HOH 142 2 HOH HOH 436 A HOH 143 2 HOH HOH 437 A HOH 144 2 HOH HOH 438 A HOH 145 2 HOH HOH 439 A HOH 146 2 HOH HOH 440 A HOH 147 2 HOH HOH 441 A HOH 148 2 HOH HOH 442 A HOH 149 2 HOH HOH 443 A HOH 150 2 HOH HOH 444 A HOH 151 2 HOH HOH 445 A HOH 152 2 HOH HOH 446 A HOH 153 2 HOH HOH 447 A HOH 154 2 HOH HOH 448 A HOH 155 2 HOH HOH 449 A HOH 156 2 HOH HOH 450 A HOH 158 2 HOH HOH 451 A HOH 159 2 HOH HOH 452 A HOH 160 2 HOH HOH 453 A HOH 161 2 HOH HOH 454 A HOH 162 2 HOH HOH 455 A HOH 163 2 HOH HOH 456 A HOH 164 2 HOH HOH 457 A HOH 165 2 HOH HOH 458 A HOH 166 2 HOH HOH 459 A HOH 167 2 HOH HOH 460 A HOH 168 2 HOH HOH 461 A HOH 169 2 HOH HOH 462 A HOH 170 2 HOH HOH 463 A HOH 171 2 HOH HOH 464 A HOH 172 2 HOH HOH 465 A HOH 173 2 HOH HOH 466 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A HIS 3 n 3 HIS 3 A ILE 4 n 4 ILE 4 A VAL 5 n 5 VAL 5 A ILE 6 n 6 ILE 6 A PRO 7 n 7 PRO 7 A ALA 8 n 8 ALA 8 A ARG 9 n 9 ARG 9 A PHE 10 n 10 PHE 10 A SER 11 n 11 SER 11 A SER 12 n 12 SER 12 A SER 13 n 13 SER 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A PRO 16 n 16 PRO 16 A GLY 17 n 17 GLY 17 A LYS 18 n 18 LYS 18 A PRO 19 n 19 PRO 19 A LEU 20 n 20 LEU 20 A LEU 21 n 21 LEU 21 A LEU 22 n 22 LEU 22 A ILE 23 n 23 ILE 23 A HIS 24 n 24 HIS 24 A ASP 25 n 25 ASP 25 A ARG 26 n 26 ARG 26 A PRO 27 n 27 PRO 27 A MET 28 n 28 MET 28 A ILE 29 n 29 ILE 29 A LEU 30 n 30 LEU 30 A ARG 31 n 31 ARG 31 A VAL 32 n 32 VAL 32 A VAL 33 n 33 VAL 33 A ASP 34 n 34 ASP 34 A GLN 35 n 35 GLN 35 A ALA 36 n 36 ALA 36 A LYS 37 n 37 LYS 37 A LYS 38 n 38 LYS 38 A VAL 39 n 39 VAL 39 A GLU 40 n 40 GLU 40 A GLY 41 n 41 GLY 41 A PHE 42 n 42 PHE 42 A ASP 43 n 43 ASP 43 A ASP 44 n 44 ASP 44 A LEU 45 n 45 LEU 45 A CYS 46 n 46 CYS 46 A VAL 47 n 47 VAL 47 A ALA 48 n 48 ALA 48 A THR 49 n 49 THR 49 A ASP 50 n 50 ASP 50 A ASP 51 n 51 ASP 51 A GLU 52 n 52 GLU 52 A ARG 53 n 53 ARG 53 A ILE 54 n 54 ILE 54 A ALA 55 n 55 ALA 55 A GLU 56 n 56 GLU 56 A ILE 57 n 57 ILE 57 A CYS 58 n 58 CYS 58 A ARG 59 n 59 ARG 59 A ALA 60 n 60 ALA 60 A GLU 61 n 61 GLU 61 A GLY 62 n 62 GLY 62 A VAL 63 n 63 VAL 63 A ASP 64 n 64 ASP 64 A VAL 65 n 65 VAL 65 A VAL 66 n 66 VAL 66 A LEU 67 n 67 LEU 67 A THR 68 n 68 THR 68 A SER 69 n 69 SER 69 A ALA 70 n 70 ALA 70 A ASP 71 n 71 ASP 71 A HIS 72 n 72 HIS 72 A PRO 73 n 73 PRO 73 A SER 74 n 74 SER 74 A GLY 75 n 75 GLY 75 A THR 76 n 76 THR 76 A ASP 77 n 77 ASP 77 A ARG 78 n 78 ARG 78 A LEU 79 n 79 LEU 79 A SER 80 n 80 SER 80 A GLU 81 n 81 GLU 81 A VAL 82 n 82 VAL 82 A ALA 83 n 83 ALA 83 A ARG 84 n 84 ARG 84 A ILE 85 n 85 ILE 85 A LYS 86 n 86 LYS 86 A GLY 87 n 87 GLY 87 A TRP 88 n 88 TRP 88 A ASP 89 n 89 ASP 89 A ALA 90 n 90 ALA 90 A ASP 91 n 91 ASP 91 A ASP 92 n 92 ASP 92 A ILE 93 n 93 ILE 93 A ILE 94 n 94 ILE 94 A VAL 95 n 95 VAL 95 A ASN 96 n 96 ASN 96 A VAL 97 n 97 VAL 97 A GLN 98 n 98 GLN 98 A GLY 99 n 99 GLY 99 A ASP 100 n 100 ASP 100 A GLU 101 n 101 GLU 101 A PRO 102 n 102 PRO 102 A LEU 103 n 103 LEU 103 A LEU 104 n 104 LEU 104 A PRO 105 n 105 PRO 105 A ALA 106 n 106 ALA 106 A GLN 107 n 107 GLN 107 A LEU 108 n 108 LEU 108 A VAL 109 n 109 VAL 109 A GLN 110 n 110 GLN 110 A GLN 111 n 111 GLN 111 A VAL 112 n 112 VAL 112 A ALA 113 n 113 ALA 113 A LYS 114 n 114 LYS 114 A LEU 115 n 115 LEU 115 A LEU 116 n 116 LEU 116 A VAL 117 n 117 VAL 117 A ASP 118 n 118 ASP 118 A LYS 119 n 119 LYS 119 A PRO 120 n 120 PRO 120 A ASN 121 n 121 ASN 121 A CYS 122 n 122 CYS 122 A SER 123 n 123 SER 123 A MET 124 n 124 MET 124 A SER 125 n 125 SER 125 A THR 126 n 126 THR 126 A LEU 127 n 127 LEU 127 A CYS 128 n 128 CYS 128 A GLU 129 n 129 GLU 129 A PRO 130 n 130 PRO 130 A ILE 131 n 131 ILE 131 A HIS 132 n 132 HIS 132 A ALA 133 n 133 ALA 133 A LEU 134 n 134 LEU 134 A ASP 135 n 135 ASP 135 A GLU 136 n 136 GLU 136 A PHE 137 n 137 PHE 137 A GLN 138 n 138 GLN 138 A ARG 139 n 139 ARG 139 A ASP 140 n 140 ASP 140 A SER 141 n 141 SER 141 A ILE 142 n 142 ILE 142 A VAL 143 n 143 VAL 143 A LYS 144 n 144 LYS 144 A VAL 145 n 145 VAL 145 A VAL 146 n 146 VAL 146 A MET 147 n 147 MET 147 A SER 148 n 148 SER 148 A LYS 149 n 149 LYS 149 A GLN 150 n 150 GLN 150 A ASN 151 n 151 ASN 151 A GLU 152 n 152 GLU 152 A ALA 153 n 153 ALA 153 A LEU 154 n 154 LEU 154 A TYR 155 n 155 TYR 155 A PHE 156 n 156 PHE 156 A SER 157 n 157 SER 157 A ARG 158 n 158 ARG 158 A ALA 159 n 159 ALA 159 A THR 160 n 160 THR 160 A ILE 161 n 161 ILE 161 A PRO 162 n 162 PRO 162 A TYR 163 n 163 TYR 163 A ASP 164 n 164 ASP 164 A ARG 165 n 165 ARG 165 A ASP 166 n 166 ASP 166 A GLY 167 n 167 GLY 167 A ALA 168 n 168 ALA 168 A LYS 169 n 169 LYS 169 A ARG 170 n 170 ARG 170 A ASP 171 n 171 ASP 171 A GLU 172 n 172 GLU 172 A PRO 173 n 173 PRO 173 A THR 174 n 174 THR 174 A LEU 175 n 175 LEU 175 A HIS 176 n 176 HIS 176 A THR 177 n 177 THR 177 A GLN 178 n 178 GLN 178 A ALA 179 n 179 ALA 179 A PHE 180 n 180 PHE 180 A ARG 181 n 181 ARG 181 A HIS 182 n 182 HIS 182 A LEU 183 n 183 LEU 183 A GLY 184 n 184 GLY 184 A LEU 185 n 185 LEU 185 A TYR 186 n 186 TYR 186 A ALA 187 n 187 ALA 187 A TYR 188 n 188 TYR 188 A ARG 189 n 189 ARG 189 A VAL 190 n 190 VAL 190 A SER 191 n 191 SER 191 A LEU 192 n 192 LEU 192 A LEU 193 n 193 LEU 193 A GLN 194 n 194 GLN 194 A GLU 195 n 195 GLU 195 A TYR 196 n 196 TYR 196 A VAL 197 n 197 VAL 197 A THR 198 n 198 THR 198 A TRP 199 n 199 TRP 199 A GLU 200 n 200 GLU 200 A MET 201 n 201 MET 201 A GLY 202 n 202 GLY 202 A LYS 203 n 203 LYS 203 A LEU 204 n 204 LEU 204 A GLU 205 n 205 GLU 205 A LYS 206 n 206 LYS 206 A LEU 207 n 207 LEU 207 A GLU 208 n 208 GLU 208 A SER 209 n 209 SER 209 A LEU 210 n 210 LEU 210 A GLU 211 n 211 GLU 211 A GLN 212 n 212 GLN 212 A LEU 213 n 213 LEU 213 A ARG 214 n 214 ARG 214 A VAL 215 n 215 VAL 215 A LEU 216 n 216 LEU 216 A GLU 217 n 217 GLU 217 A ASN 218 n 218 ASN 218 A GLY 219 n 219 GLY 219 A HIS 220 n 220 HIS 220 A ARG 221 n 221 ARG 221 A ILE 222 n 222 ILE 222 A ALA 223 n 223 ALA 223 A ILE 224 n 224 ILE 224 A ALA 225 n 225 ALA 225 A VAL 226 n 226 VAL 226 A ALA 227 n 227 ALA 227 A GLU 228 n 228 GLU 228 A ALA 229 n 229 ALA 229 A ASN 230 n 230 ASN 230 A LEU 231 n 231 LEU 231 A PRO 232 n 232 PRO 232 A PRO 233 n 233 PRO 233 A GLY 234 n 234 GLY 234 A VAL 235 n 235 VAL 235 A ASP 236 n 236 ASP 236 A THR 237 n 237 THR 237 A GLN 238 n 238 GLN 238 A ALA 239 n 239 ALA 239 A ASP 240 n 240 ASP 240 A LEU 241 n 241 LEU 241 A ASP 242 n 242 ASP 242 A ARG 243 n 243 ARG 243 A LEU 244 n 244 LEU 244 A ASN 245 n 245 ASN 245 A ASN 246 n 246 ASN 246 A MET 247 n 247 MET 247 A PRO 248 n 248 PRO 248 A VAL 249 n 249 VAL 249 A GLU 250 n 250 GLU 250 A SER 251 n 251 SER 251 A PHE 252 n 252 PHE 252 A GLU 253 n 253 GLU 253 A 3.6248 3.0292 -0.5831 5.7345 0.1792 1.1542 -0.1230 0.2290 0.1744 -0.3301 0.1609 0.3042 -0.2290 -0.0187 -0.0379 0.1302 0.0291 -0.0061 0.0719 0.0010 0.0205 refined 27.2978 14.9599 -18.8649 X-RAY DIFFRACTION 1.3812 0.1370 -0.1440 0.6762 0.1908 1.0323 0.0014 0.0892 -0.1234 -0.0823 -0.0325 0.0146 -0.0682 -0.0081 0.0311 0.0437 0.0108 -0.0045 0.0278 -0.0052 0.0133 refined 20.4153 6.1950 -14.1968 X-RAY DIFFRACTION 3.8184 -0.6504 0.0343 3.0076 -0.5329 1.2478 -0.0909 -0.2074 0.3605 0.1882 0.0453 0.0504 -0.2542 -0.0013 0.0456 0.0628 -0.0037 -0.0075 0.0561 -0.0318 0.0481 refined 5.2948 19.3723 3.0053 X-RAY DIFFRACTION 1.3228 -0.3960 -0.2246 0.9931 0.1138 0.5300 0.0574 0.1541 -0.0215 -0.0476 -0.0511 0.0666 -0.0524 -0.0408 -0.0063 0.0460 -0.0025 0.0069 0.0385 0.0067 0.0146 refined 6.1695 10.5902 -7.1041 X-RAY DIFFRACTION 2.5906 1.5884 0.2949 1.0236 0.1993 0.0454 0.1025 -0.0914 0.0851 0.0050 -0.0910 0.0223 0.0129 -0.0195 -0.0116 0.1870 0.0230 0.0057 0.1237 -0.0226 0.0554 refined 31.3748 20.5235 -8.6358 X-RAY DIFFRACTION A 1 A 33 X-RAY DIFFRACTION 1 A 34 A 135 X-RAY DIFFRACTION 2 A 136 A 170 X-RAY DIFFRACTION 3 A 171 A 227 X-RAY DIFFRACTION 4 A 228 A 253 X-RAY DIFFRACTION 5 author_and_software_defined_assembly PISA 2 dimeric 3030 -11 22250 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 66 A O VAL 66 A N VAL 47 A N VAL 47 A O ALA 48 A O ALA 48 A N ILE 6 A N ILE 6 A N HIS 3 A N HIS 3 A O ILE 93 A O ILE 93 A N ILE 94 A N ILE 94 A O TYR 188 A O TYR 188 A O ARG 181 A O ARG 181 A N GLU 129 A N GLU 129 A N MET 124 A N MET 124 A O ALA 223 A O ALA 223 A N ILE 23 A N ILE 23 A O ARG 26 A O ARG 26 A N LYS 144 A N LYS 144 A O SER 157 A O SER 157 1 A SER 12 -49.67 81.86 1 A ARG 14 -168.94 -28.63 22.357 -0.28 -0.00 1.17 -1.56 0.00 2.39 0.954 0.929 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24233 0.18719 0.18999 0.18999 1.90 29.52 940 17342 17342 5.1 99.78 8.736 0.117 RANDOM 1 Thermal Factors Individually Refined THROUGHOUT MOLECULAR REPLACEMENT 0.188 0.169 0.80 0.80 1.20 3POL MAXIMUM LIKELIHOOD MASK 1.90 29.52 166 2159 0 0 1993 0.012 0.022 2118 0.001 0.020 1450 1.415 1.978 2886 0.851 3.000 3546 2.945 5.000 269 30.672 24.272 103 11.064 15.000 380 12.670 15.000 19 0.087 0.200 326 0.005 0.021 2400 0.001 0.020 405 1.129 1.500 1321 0.345 1.500 520 1.917 2.000 2154 3.076 3.000 797 5.034 4.500 732 0.311 0.222 1.949 71 1254 1254 20 99.25 22.0 1.90 30.0 4FCU 18315 18315 -3.0 0.091 1 13.3 3.7 99.8 0.490 1.90 1.93 2.5 909 1 3.4 99.3 data collection Blu-Ice Max phasing PHASER refinement REFMAC 5.5.0102 data reduction HKL-3000 data scaling HKL-3000 1.9 Angstrom Crystal Structure of 3-deoxy-manno-octulosonate Cytidylyltransferase (kdsB) from Acinetobacter baumannii without His-Tag Bound to the Active Site 1 N N 2 N N Chains A and symmetry related -X, Y, -Z one form a dimer. A GLY 17 A GLY 17 HELX_P A LEU 20 A LEU 20 5 1 4 A MET 28 A MET 28 HELX_P A LYS 38 A LYS 38 1 2 11 A ASP 51 A ASP 51 HELX_P A ALA 60 A ALA 60 1 3 10 A SER 74 A SER 74 HELX_P A GLY 87 A GLY 87 1 4 14 A PRO 105 A PRO 105 HELX_P A LYS 119 A LYS 119 1 5 15 A ALA 133 A ALA 133 HELX_P A ARG 139 A ARG 139 1 6 7 A VAL 190 A VAL 190 HELX_P A VAL 197 A VAL 197 1 7 8 A GLY 202 A GLY 202 HELX_P A SER 209 A SER 209 1 8 8 A GLN 212 A GLN 212 HELX_P A ASN 218 A ASN 218 1 9 7 A THR 237 A THR 237 HELX_P A ASN 246 A ASN 246 1 10 10 A PRO 248 A PRO 248 HELX_P A GLU 253 A GLU 253 5 11 6 TRANSFERASE Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious Diseases, CSGID, lipopolysaccharide biosynthetic process, 3-deoxy-manno-octulosonate cytidylyltransferase activity, TRANSFERASE A ILE 161 A ILE 161 1 A PRO 162 A PRO 162 -1.79 A ALA 168 A ALA 168 1 A LYS 169 A LYS 169 4.18 KDSB_ACIBT UNP 1 1 A3M4Z0 MKHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLS EVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRAT IPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQAD LDRLNNMPVESFE 1 253 4FCU 1 253 A3M4Z0 A 1 1 253 7 2 2 parallel parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A VAL 65 A VAL 65 A LEU 67 A LEU 67 A ASP 44 A ASP 44 A THR 49 A THR 49 A LYS 2 A LYS 2 A PRO 7 A PRO 7 A ILE 93 A ILE 93 A ASN 96 A ASN 96 A PHE 180 A PHE 180 A ARG 189 A ARG 189 A MET 124 A MET 124 A PRO 130 A PRO 130 A ILE 222 A ILE 222 A VAL 226 A VAL 226 A LEU 22 A LEU 22 A ILE 23 A ILE 23 A ARG 26 A ARG 26 A PRO 27 A PRO 27 A LYS 144 A LYS 144 A MET 147 A MET 147 A ALA 153 A ALA 153 A SER 157 A SER 157 5 C 1 2 1