0.014152
0.000000
0.000000
0.000000
0.014152
0.000000
0.000000
0.000000
0.007086
0.00000
0.00000
0.00000
Kuzin, A.
Neely, H.
Seetharaman, J.
Wang, H.
Sahdev, S.
Foote, E.L.
Xiao, R.
Liu, J.
Everett, J.K.
Acton, T.B.
Rost, B.
Montelione, G.T.
Hunt, J.F.
Tong, L.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
70.661
70.661
141.117
C2 H4 O2
60.052
ACETIC ACID
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
H
N
9
N
N
N
10
S
C
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
O
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
N
N
23
S
C
N
24
N
C
N
25
N
O
N
26
N
C
N
27
N
C
N
28
N
C
N
29
N
N
N
30
N
C
N
31
N
N
N
32
N
N
N
33
N
O
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
C
N
55
N
O
N
56
N
N
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
C
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
R
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
S
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
N
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
Y
150
N
C
Y
151
N
N
Y
152
N
C
Y
153
N
C
Y
154
N
N
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
S
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
SE
N
246
N
C
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
O
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
R
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
Y
147
N
sing
Y
148
N
doub
Y
149
N
doub
N
150
N
sing
Y
151
N
sing
N
152
N
sing
Y
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
doub
Y
256
N
sing
Y
257
N
sing
N
258
N
sing
Y
259
N
doub
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
To be Published
0353
Three-dimensional structure of the protein prib from ralstonia solanacearum at the resolution 1.8a. northeast structural genomics consortium target rsr213c
10.2210/pdb4fdb/pdb
pdb_00004fdb
100
1
CCD
2012-04-11
MAR CCD 165 mm
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
X4C
NSLS
0.979
SYNCHROTRON
NSLS BEAMLINE X4C
11224.524
Probable primosomal replication protein n
1
man
polymer
60.052
ACETIC ACID
1
syn
non-polymer
18.015
water
89
nat
water
no
yes
AINRLQLVATLVEREV(MSE)RYTPAGVPIVNCLLSYSGQA(MSE)EAQTARQVEFSIEALGAGK(MSE)ASVLDRIAPG
TVLDCVGFLARKHRSSKALVFHISGLEHHHHHH
AINRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQTARQVEFSIEALGAGKMASVLDRIAPGTVLDCVGFLARK
HRSSKALVFHISGLEHHHHHH
A
NESG-RsR213C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
GMI1000
sample
priB, RSc1308
267608
Ralstonia solanacearum
1
3.93
68.69
7.5
Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl, pH 7.5. Reservoir solution: 5.76M K-ACETATE 0.1M NA3-CITRATE, UNDER OIL BATCH, temperature 277K
277
Northeast Structural Genomics Consortium
NESG
PSI:Biology
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2013-02-13
1
1
2023-09-13
1
2
2023-12-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
To be obsolete
Y
RCSB
Y
RCSB
2012-05-27
REL
REL
ACY
ACETIC ACID
HOH
water
3EN2
PDB entry 3EN2
PDB
experimental model
ACY
1
2
ACY
ACY
201
A
HOH
1
3
HOH
HOH
301
A
HOH
2
3
HOH
HOH
302
A
HOH
3
3
HOH
HOH
303
A
HOH
4
3
HOH
HOH
304
A
HOH
5
3
HOH
HOH
305
A
HOH
6
3
HOH
HOH
306
A
HOH
7
3
HOH
HOH
307
A
HOH
8
3
HOH
HOH
308
A
HOH
10
3
HOH
HOH
309
A
HOH
11
3
HOH
HOH
310
A
HOH
12
3
HOH
HOH
311
A
HOH
13
3
HOH
HOH
312
A
HOH
15
3
HOH
HOH
313
A
HOH
16
3
HOH
HOH
314
A
HOH
19
3
HOH
HOH
315
A
HOH
20
3
HOH
HOH
316
A
HOH
21
3
HOH
HOH
317
A
HOH
22
3
HOH
HOH
318
A
HOH
23
3
HOH
HOH
319
A
HOH
24
3
HOH
HOH
320
A
HOH
25
3
HOH
HOH
321
A
HOH
26
3
HOH
HOH
322
A
HOH
27
3
HOH
HOH
323
A
HOH
28
3
HOH
HOH
324
A
HOH
29
3
HOH
HOH
325
A
HOH
30
3
HOH
HOH
326
A
HOH
31
3
HOH
HOH
327
A
HOH
32
3
HOH
HOH
328
A
HOH
33
3
HOH
HOH
329
A
HOH
34
3
HOH
HOH
330
A
HOH
35
3
HOH
HOH
331
A
HOH
36
3
HOH
HOH
332
A
HOH
37
3
HOH
HOH
333
A
HOH
38
3
HOH
HOH
334
A
HOH
39
3
HOH
HOH
335
A
HOH
40
3
HOH
HOH
336
A
HOH
41
3
HOH
HOH
337
A
HOH
42
3
HOH
HOH
338
A
HOH
43
3
HOH
HOH
339
A
HOH
44
3
HOH
HOH
340
A
HOH
45
3
HOH
HOH
341
A
HOH
46
3
HOH
HOH
342
A
HOH
47
3
HOH
HOH
343
A
HOH
48
3
HOH
HOH
344
A
HOH
49
3
HOH
HOH
345
A
HOH
50
3
HOH
HOH
346
A
HOH
51
3
HOH
HOH
347
A
HOH
52
3
HOH
HOH
348
A
HOH
53
3
HOH
HOH
349
A
HOH
54
3
HOH
HOH
350
A
HOH
55
3
HOH
HOH
351
A
HOH
56
3
HOH
HOH
352
A
HOH
57
3
HOH
HOH
353
A
HOH
58
3
HOH
HOH
354
A
HOH
59
3
HOH
HOH
355
A
HOH
60
3
HOH
HOH
356
A
HOH
61
3
HOH
HOH
357
A
HOH
62
3
HOH
HOH
358
A
HOH
63
3
HOH
HOH
359
A
HOH
64
3
HOH
HOH
360
A
HOH
65
3
HOH
HOH
361
A
HOH
66
3
HOH
HOH
362
A
HOH
67
3
HOH
HOH
363
A
HOH
68
3
HOH
HOH
364
A
HOH
69
3
HOH
HOH
365
A
HOH
70
3
HOH
HOH
366
A
HOH
71
3
HOH
HOH
367
A
HOH
72
3
HOH
HOH
368
A
HOH
73
3
HOH
HOH
369
A
HOH
74
3
HOH
HOH
370
A
HOH
75
3
HOH
HOH
371
A
HOH
76
3
HOH
HOH
372
A
HOH
77
3
HOH
HOH
373
A
HOH
78
3
HOH
HOH
374
A
HOH
79
3
HOH
HOH
375
A
HOH
80
3
HOH
HOH
376
A
HOH
81
3
HOH
HOH
377
A
HOH
82
3
HOH
HOH
378
A
HOH
83
3
HOH
HOH
379
A
HOH
84
3
HOH
HOH
380
A
HOH
85
3
HOH
HOH
381
A
HOH
86
3
HOH
HOH
382
A
HOH
87
3
HOH
HOH
383
A
HOH
88
3
HOH
HOH
384
A
HOH
89
3
HOH
HOH
385
A
HOH
90
3
HOH
HOH
386
A
HOH
91
3
HOH
HOH
387
A
HOH
92
3
HOH
HOH
388
A
HOH
93
3
HOH
HOH
389
A
ALA
2
n
1
ALA
2
A
ILE
3
n
2
ILE
3
A
ASN
4
n
3
ASN
4
A
ARG
5
n
4
ARG
5
A
LEU
6
n
5
LEU
6
A
GLN
7
n
6
GLN
7
A
LEU
8
n
7
LEU
8
A
VAL
9
n
8
VAL
9
A
ALA
10
n
9
ALA
10
A
THR
11
n
10
THR
11
A
LEU
12
n
11
LEU
12
A
VAL
13
n
12
VAL
13
A
GLU
14
n
13
GLU
14
A
ARG
15
n
14
ARG
15
A
GLU
16
n
15
GLU
16
A
VAL
17
n
16
VAL
17
A
MSE
18
n
17
MSE
18
A
ARG
19
n
18
ARG
19
A
TYR
20
n
19
TYR
20
A
THR
21
n
20
THR
21
A
PRO
22
n
21
PRO
22
A
ALA
23
n
22
ALA
23
A
GLY
24
n
23
GLY
24
A
VAL
25
n
24
VAL
25
A
PRO
26
n
25
PRO
26
A
ILE
27
n
26
ILE
27
A
VAL
28
n
27
VAL
28
A
ASN
29
n
28
ASN
29
A
CYS
30
n
29
CYS
30
A
LEU
31
n
30
LEU
31
A
LEU
32
n
31
LEU
32
A
SER
33
n
32
SER
33
A
TYR
34
n
33
TYR
34
A
SER
35
n
34
SER
35
A
GLY
36
n
35
GLY
36
A
GLN
37
n
36
GLN
37
A
ALA
38
n
37
ALA
38
A
MSE
39
n
38
MSE
39
A
GLU
40
n
39
GLU
40
A
ALA
41
n
40
ALA
41
A
GLN
42
n
41
GLN
42
A
THR
43
n
42
THR
43
A
ALA
44
n
43
ALA
44
A
ARG
45
n
44
ARG
45
A
GLN
46
n
45
GLN
46
A
VAL
47
n
46
VAL
47
A
GLU
48
n
47
GLU
48
A
PHE
49
n
48
PHE
49
A
SER
50
n
49
SER
50
A
ILE
51
n
50
ILE
51
A
GLU
52
n
51
GLU
52
A
ALA
53
n
52
ALA
53
A
LEU
54
n
53
LEU
54
A
GLY
55
n
54
GLY
55
A
ALA
56
n
55
ALA
56
A
GLY
57
n
56
GLY
57
A
LYS
58
n
57
LYS
58
A
MSE
59
n
58
MSE
59
A
ALA
60
n
59
ALA
60
A
SER
61
n
60
SER
61
A
VAL
62
n
61
VAL
62
A
LEU
63
n
62
LEU
63
A
ASP
64
n
63
ASP
64
A
ARG
65
n
64
ARG
65
A
ILE
66
n
65
ILE
66
A
ALA
67
n
66
ALA
67
A
PRO
68
n
67
PRO
68
A
GLY
69
n
68
GLY
69
A
THR
70
n
69
THR
70
A
VAL
71
n
70
VAL
71
A
LEU
72
n
71
LEU
72
A
ASP
73
n
72
ASP
73
A
CYS
74
n
73
CYS
74
A
VAL
75
n
74
VAL
75
A
GLY
76
n
75
GLY
76
A
PHE
77
n
76
PHE
77
A
LEU
78
n
77
LEU
78
A
ALA
79
n
78
ALA
79
A
ARG
80
n
79
ARG
80
A
LYS
81
n
80
LYS
81
A
HIS
82
n
81
HIS
82
A
n
82
83
A
n
83
84
A
n
84
85
A
LYS
86
n
85
LYS
86
A
ALA
87
n
86
ALA
87
A
LEU
88
n
87
LEU
88
A
VAL
89
n
88
VAL
89
A
PHE
90
n
89
PHE
90
A
HIS
91
n
90
HIS
91
A
ILE
92
n
91
ILE
92
A
SER
93
n
92
SER
93
A
GLY
94
n
93
GLY
94
A
LEU
95
n
94
LEU
95
A
GLU
96
n
95
GLU
96
A
HIS
97
n
96
HIS
97
A
HIS
98
n
97
HIS
98
A
HIS
99
n
98
HIS
99
A
n
99
100
A
n
100
101
A
n
101
102
A
3.7479
0.9706
0.5843
3.0304
-0.1191
3.0588
0.0689
-0.0611
0.0251
0.0440
-0.0135
-0.0600
-0.1432
0.0042
-0.0262
0.1535
-0.0049
0.0031
0.0806
-0.0174
0.0818
refined
22.9529
-12.2143
7.1392
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
all
author_and_software_defined_assembly
PISA
2
dimeric
2780
-13
9930
A
MSE
18
SELENOMETHIONINE
A
MSE
17
MET
A
MSE
39
SELENOMETHIONINE
A
MSE
38
MET
A
MSE
59
SELENOMETHIONINE
A
MSE
58
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
19
A
N
ARG
18
A
O
ILE
27
A
O
ILE
26
A
N
TYR
34
A
N
TYR
33
A
O
PHE
49
A
O
PHE
48
A
N
LEU
54
A
N
LEU
53
A
O
ILE
92
A
O
ILE
91
A
O
GLU
96
A
O
GLU
95
A
N
ASP
73
A
N
ASP
72
A
O
CYS
74
A
O
CYS
73
A
N
LEU
8
A
N
LEU
7
A
N
VAL
13
A
N
VAL
12
A
O
LEU
31
A
O
LEU
30
1
A
ARG
83
A
ARG
82
1
Y
1
A
SER
84
A
SER
83
1
Y
1
A
SER
85
A
SER
84
1
Y
1
A
HIS
100
A
HIS
99
1
Y
1
A
HIS
101
A
HIS
100
1
Y
1
A
HIS
102
A
HIS
101
1
Y
28.242
3.661
0.000
-0.000
3.661
-0.000
-7.323
0.2175
0.1957
0.1968
1.800
40.776
845
16694
5.06
98.23
1.00
0.50
0.15
1
1.34
MOLECULAR REPLACEMENT
19.91
0.90
1.11
PDB entry 3EN2
ML
FLAT BULK SOLVENT MODEL
1.800
40.776
89
816
4
0
723
0.007
773
1.167
1041
14.567
283
0.082
124
0.005
134
0.2273
0.2206
1.9130
130
2429
92.00
0.1993
0.1828
2.0607
155
2604
99.00
0.2295
0.1788
2.2680
143
2625
99.00
0.2285
0.2010
2.5962
136
2644
99.00
0.2302
0.2003
3.2707
132
2713
100.00
0.2060
0.1960
40.7868
149
2834
100.00
1.8
50
4FDB
31660
-3.0
0.095
1
9.3
26.9
100
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
dev_1269
data extraction
PDB
help@deposit.rcsb.org
Jan. 22, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.100
Three-dimensional structure of the protein prib from ralstonia solanacearum at the resolution 1.8a. northeast structural genomics consortium target rsr213c
1
N
N
2
N
N
3
N
N
dimer,24.97 kD,87.5%
A
GLY
57
A
GLY
56
HELX_P
A
ASP
64
A
ASP
63
1
1
8
covale
1.328
both
A
VAL
17
A
C
VAL
16
1_555
A
MSE
18
A
N
MSE
17
1_555
covale
1.331
both
A
MSE
18
A
C
MSE
17
1_555
A
ARG
19
A
N
ARG
18
1_555
covale
1.329
both
A
ALA
38
A
C
ALA
37
1_555
A
MSE
39
A
N
MSE
38
1_555
covale
1.329
both
A
MSE
39
A
C
MSE
38
1_555
A
GLU
40
A
N
GLU
39
1_555
covale
1.326
both
A
LYS
58
A
C
LYS
57
1_555
A
MSE
59
A
N
MSE
58
1_555
covale
1.331
both
A
MSE
59
A
C
MSE
58
1_555
A
ALA
60
A
N
ALA
59
1_555
REPLICATION
Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, REPLICATION
Q8XZT7_RALSO
UNP
1
9
Q8XZT7
AINRLQLVATLAEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAPGTVLECVGFLARK
HRSSKALVFHISG
9
101
4FDB
2
94
Q8XZT7
A
1
1
93
1
ALA
engineered mutation
VAL
13
4FDB
A
Q8XZT7
UNP
20
12
1
ALA
engineered mutation
THR
43
4FDB
A
Q8XZT7
UNP
50
42
1
GLU
engineered mutation
ASP
73
4FDB
A
Q8XZT7
UNP
80
72
1
expression tag
LEU
95
4FDB
A
Q8XZT7
UNP
94
1
expression tag
GLU
96
4FDB
A
Q8XZT7
UNP
95
1
expression tag
HIS
97
4FDB
A
Q8XZT7
UNP
96
1
expression tag
HIS
98
4FDB
A
Q8XZT7
UNP
97
1
expression tag
HIS
99
4FDB
A
Q8XZT7
UNP
98
1
expression tag
HIS
100
4FDB
A
Q8XZT7
UNP
99
1
expression tag
HIS
101
4FDB
A
Q8XZT7
UNP
100
1
expression tag
HIS
102
4FDB
A
Q8XZT7
UNP
101
7
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
19
A
ARG
18
A
TYR
20
A
TYR
19
A
PRO
26
A
PRO
25
A
ALA
38
A
ALA
37
A
ARG
45
A
ARG
44
A
ALA
56
A
ALA
55
A
LEU
88
A
LEU
87
A
HIS
97
A
HIS
96
A
VAL
71
A
VAL
70
A
ARG
80
A
ARG
79
A
LEU
6
A
LEU
5
A
ARG
15
A
ARG
14
A
PRO
26
A
PRO
25
A
ALA
38
A
ALA
37
BINDING SITE FOR RESIDUE ACY A 201
A
ACY
201
Software
2
A
ARG
15
A
ARG
14
2
1_555
A
HOH
315
C
HOH
2
1_555
98
I 41 2 2