0.007536 0.000000 0.000055 0.000000 0.028415 0.000000 0.000000 0.000000 0.024057 0.00000 0.00000 0.00000 Stoddard, C.D. Trausch, J.J. Widmann, J. Marcano, J. Knight, R. Batey, R.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.42 90.00 132.698 35.193 41.569 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C2 H3 O2 -1 59.044 ACETATE ION non-polymer C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C5 H4 N4 O 136.111 HYPOXANTHINE non-polymer Co H18 N6 3 161.116 COBALT HEXAMMINE(III) non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N C N 39 N O N 40 N O N 41 N C N 42 N H N 43 N H N 44 N H N 45 N O N 46 N P N 47 N O N 48 N O N 49 N O N 50 N C N 51 R C N 52 N O N 53 S C N 54 N O N 55 R C N 56 N O N 57 R C N 58 N N N 59 N C N 60 N O N 61 N N N 62 N C N 63 N N N 64 N C N 65 N C N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N O N 81 N P N 82 N O N 83 N O N 84 N O N 85 N C N 86 R C N 87 N O N 88 S C N 89 N O N 90 R C N 91 N O N 92 R C Y 93 N N Y 94 N C Y 95 N N Y 96 N C N 97 N C N 98 N O N 99 N N N 100 N C N 101 N N N 102 N N Y 103 N C N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N O N 119 N H N 120 N H Y 121 N N Y 122 N C Y 123 N N Y 124 N C Y 125 N C Y 126 N C N 127 N O Y 128 N N Y 129 N C Y 130 N N N 131 N H N 132 N H N 133 N H N 134 N H N 135 N CO N 136 N N N 137 N N N 138 N N N 139 N N N 140 N N N 141 N N N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N P N 162 N O N 163 N O N 164 N O N 165 N C N 166 R C N 167 N O N 168 S C N 169 N O N 170 R C N 171 N O N 172 R C N 173 N N N 174 N C N 175 N O N 176 N N N 177 N C N 178 N O N 179 N C N 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing N 111 N sing Y 112 N doub N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing Y 124 N sing Y 125 N sing N 126 N sing Y 127 N doub N 128 N sing Y 129 N sing Y 130 N doub Y 131 N sing Y 132 N sing Y 133 N sing N 134 N doub Y 135 N sing N 136 N sing Y 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N doub N 196 N sing N 197 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 425 1596 1611 10.1016/j.jmb.2013.02.023 23485418 Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch. 2013 10.2210/pdb4fel/pdb pdb_00004fel 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-06-03 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 X25 NSLS 0.9795 SYNCHROTRON NSLS BEAMLINE X25 21545.824 U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain 1 syn polymer 136.111 HYPOXANTHINE 1 syn non-polymer 59.044 ACETATE ION 1 syn non-polymer 161.116 COBALT HEXAMMINE(III) 9 syn non-polymer 18.015 water 611 nat water no no GGACAUAUAAACGCGUGGAUAUGGCACGCGAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC GGACAUAUAAACGCGUGGAUAUGGCACGCGAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.25 45.39 VAPOR DIFFUSION, HANGING DROP 7.5 25% PEG 3K, 200 mM ammonium acetate, 10 mM cobalt hexammine, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K 303 -33.453 B 15 B 81 -43.836 B_G15:C81_B 1 -13.619 -0.970 -1.914 0.188 -0.187 1 19 B 16 B 80 1.220 B_G16:C80_B 2 -16.401 -0.486 -0.145 -0.450 -3.022 1 20 B 17 B 79 0.299 B_A17:U79_B 3 -19.213 -0.101 -0.030 -0.173 0.921 1 19 B 18 B 78 2.568 B_C18:G78_B 4 -19.030 -0.040 0.084 -0.193 -8.476 1 20 B 19 B 77 7.287 B_A19:U77_B 5 -11.047 -0.083 -0.011 -0.100 -9.636 1 20 B 20 B 76 7.175 B_U20:A76_B 6 -18.839 0.220 0.157 -0.108 -3.901 1 20 B 21 B 75 3.088 B_A21:U75_B 7 -15.960 -0.044 0.129 -0.125 -30.561 B 51 B 47 -70.098 B_U51:U47_B 8 39.780 -3.563 0.919 -0.618 -19.782 1 20 B 52 B 22 0.200 B_A52:U22_B 9 0.699 0.027 -0.152 -0.078 8.771 1 19 B 53 B 46 0.665 B_C53:G46_B 10 3.669 0.200 -0.052 -0.046 12.121 5 B 25 B 45 -10.339 B_A25:A45_B 11 -10.091 -6.542 -0.349 -4.179 7.298 1 19 B 26 B 44 3.481 B_C26:G44_B 12 -16.893 0.117 -0.187 -0.123 -9.357 1 19 B 27 B 43 -0.291 B_G27:C43_B 13 -5.267 -0.107 -0.129 -0.076 1.683 1 19 B 28 B 42 0.618 B_C28:G42_B 14 -4.567 -0.085 0.012 -0.073 2.543 1 19 B 29 B 41 0.844 B_G29:C41_B 15 -10.005 -0.315 0.024 -0.175 1.959 1 20 B 30 B 40 4.730 B_U30:A40_B 16 -3.560 0.001 -0.006 -0.093 3.594 1 19 B 31 B 39 0.536 B_G31:C39_B 17 -7.142 -0.215 0.016 -0.146 -5.364 1 19 B 54 B 72 2.124 B_C54:G72_B 18 -12.065 0.265 0.098 -0.132 -7.058 1 19 B 55 B 71 -2.026 B_G55:C71_B 19 -8.621 -0.145 0.134 -0.136 0.410 1 19 B 56 B 70 -2.772 B_G56:C70_B 20 -11.987 -0.253 0.148 -0.278 -0.678 1 28 B 57 B 69 -2.377 B_G57:U69_B 21 -15.616 -2.325 -0.001 -0.665 2.987 1 19 B 58 B 68 -0.327 B_C58:G68_B 22 -13.225 0.130 0.065 -0.182 -0.951 1 20 B 59 B 67 1.675 B_A59:U67_B 23 -7.236 0.201 -0.006 -0.083 -15.103 1 19 B 60 B 38 -0.368 B_C60:G38_B 24 -13.011 0.074 0.390 -0.092 -1.654 1 19 B 61 B 37 -3.452 B_C61:G37_B 25 -10.790 0.099 0.471 -0.189 3.444 4 5 B 64 B 35 -110.423 B_A64:A35_B 26 4.776 4.180 0.454 1.359 -1.277 B 62 B 63 17.807 B_G62:U63_B 27 7.047 7.901 0.481 1.859 1.345 37.175 B B 15 16 13.295 B B 81 80 2.712 8.081 1.483 -1.427 BB_G15G16:C80C81_BB 1 -17.676 29.080 31.844 -2.963 -3.910 2.923 33.722 B B 16 17 14.532 B B 80 79 3.305 8.333 -0.012 -1.118 BB_G16A17:U79C80_BB 2 -3.439 5.997 32.529 -3.240 -0.522 2.768 33.255 B B 17 18 10.831 B B 79 78 3.105 6.165 0.543 -1.636 BB_A17C18:G78U79_BB 3 0.585 -1.028 32.689 -3.791 -0.861 2.473 33.014 B B 18 19 22.587 B B 78 77 3.347 12.528 0.335 -1.739 BB_C18A19:U77G78_BB 4 0.984 -1.774 30.590 -5.028 -0.435 2.644 33.833 B B 19 20 22.306 B B 77 76 3.289 12.680 -0.083 -1.135 BB_A19U20:A76U77_BB 5 0.912 -1.605 31.418 -3.879 0.281 1.844 31.859 B B 20 21 32.657 B B 76 75 2.995 17.002 0.506 -1.411 BB_U20A21:U75A76_BB 6 3.183 -6.114 26.857 -5.072 -0.454 2.092 159.775 B B 21 51 2.044 B B 75 47 2.102 4.023 -1.782 6.198 BB_A21U51:U47U75_BB 7 17.487 -8.883 159.522 3.141 0.934 -0.482 27.620 B B 51 52 81.713 B B 47 22 3.420 27.293 0.045 -0.992 BB_U51A52:U22U47_BB 8 -1.527 4.573 3.996 -7.380 -0.391 2.627 45.055 B B 52 53 11.608 B B 22 46 2.710 8.843 1.920 -0.079 BB_A52C53:G46U22_BB 9 -0.518 0.680 44.220 -0.758 -2.545 4.274 22.109 B B 53 25 -12.194 B B 46 45 3.000 -4.409 -2.546 -2.305 BB_C53A25:A45G46_BB 10 -11.637 32.188 18.310 -3.962 1.229 3.393 68.174 B B 25 26 6.040 B B 45 44 3.606 6.757 1.133 -1.312 BB_A25C26:G44A45_BB 11 -5.226 4.672 67.701 -1.444 -1.222 2.540 31.903 B B 26 27 23.065 B B 44 43 3.629 12.359 -0.852 -2.234 BB_C26G27:C43G44_BB 12 -1.154 2.154 29.447 -6.274 1.343 2.776 24.862 B B 27 28 5.816 B B 43 42 3.018 2.500 0.829 -2.513 BB_G27C28:G42C43_BB 13 0.707 -1.645 24.728 -6.506 -1.736 2.550 29.158 B B 28 29 14.335 B B 42 41 3.088 7.145 -0.625 -1.946 BB_C28G29:C41G42_BB 14 -1.023 2.051 28.270 -5.230 1.045 2.790 34.015 B B 29 30 17.586 B B 41 40 3.306 10.139 -0.031 -1.291 BB_G29U30:A40C41_BB 15 -0.860 1.491 32.500 -3.751 -0.077 2.963 31.342 B B 30 31 6.971 B B 40 39 3.207 3.757 0.672 -1.806 BB_U30G31:C39A40_BB 16 -0.520 0.964 31.118 -4.013 -1.336 2.577 33.485 B B 54 55 14.952 B B 72 71 3.144 8.524 -0.928 -1.821 BB_C54G55:C71G72_BB 17 0.639 -1.121 32.406 -4.410 1.704 2.968 31.568 B B 55 56 10.301 B B 71 70 3.129 5.576 -0.159 -0.675 BB_G55G56:C70C71_BB 18 -0.514 0.950 31.080 -2.214 0.203 2.499 27.636 B B 56 57 18.619 B B 70 69 3.135 8.743 0.145 -1.510 BB_G56G57:U69C70_BB 19 -1.377 2.932 26.207 -5.042 -0.600 3.111 43.021 B B 57 58 2.432 B B 69 68 3.167 1.782 0.346 -1.052 BB_G57C58:G68U69_BB 20 -1.389 1.895 42.965 -1.603 -0.604 3.140 34.524 B B 58 59 7.517 B B 68 67 3.373 4.449 0.499 -1.671 BB_C58A59:U67G68_BB 21 0.183 -0.309 34.245 -3.505 -0.812 3.324 55.369 B B 59 60 8.788 B B 67 38 3.284 8.132 2.027 -0.574 BB_A59C60:G38U67_BB 22 4.683 -5.060 54.630 -1.103 -1.902 2.826 29.154 B B 60 61 13.525 B B 38 37 3.029 6.748 -0.699 -0.622 BB_C60C61:G37G38_BB 23 -0.789 1.582 28.368 -2.571 1.233 4.575 179.753 B B 61 64 79.956 B B 37 35 4.568 159.906 -3.394 -1.214 BB_C61A64:A35G37_BB 24 -70.440 35.221 174.615 -0.705 1.654 4.297 176.827 B B 64 62 -86.788 B B 35 63 3.757 -172.621 -2.917 -2.541 BB_A64G62:U63A35_BB 25 24.134 -12.134 112.336 -0.059 1.629 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Database references Database references Data collection Database references Derived calculations 1 0 2013-02-27 1 1 2013-03-27 1 2 2013-05-22 1 3 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-05-30 REL REL HPA HYPOXANTHINE ACT ACETATE ION NCO COBALT HEXAMMINE(III) HOH water T7 RNA transcript sample HPA 90 2 HPA HPA 101 B ACT 96 3 ACT ACT 102 B NCO 101 4 NCO NCO 103 B NCO 102 4 NCO NCO 104 B NCO 103 4 NCO NCO 105 B NCO 104 4 NCO NCO 106 B NCO 105 4 NCO NCO 107 B NCO 107 4 NCO NCO 108 B NCO 108 4 NCO NCO 109 B NCO 110 4 NCO NCO 110 B NCO 112 4 NCO NCO 111 B HOH 600 5 HOH HOH 201 B HOH 601 5 HOH HOH 202 B HOH 602 5 HOH HOH 203 B HOH 603 5 HOH HOH 204 B HOH 604 5 HOH HOH 205 B HOH 605 5 HOH HOH 206 B HOH 606 5 HOH HOH 207 B HOH 607 5 HOH HOH 208 B HOH 608 5 HOH HOH 209 B HOH 609 5 HOH HOH 210 B HOH 610 5 HOH HOH 211 B HOH 611 5 HOH HOH 212 B HOH 612 5 HOH HOH 213 B HOH 613 5 HOH HOH 214 B HOH 614 5 HOH HOH 215 B HOH 615 5 HOH HOH 216 B HOH 616 5 HOH HOH 217 B HOH 617 5 HOH HOH 218 B HOH 618 5 HOH HOH 219 B HOH 619 5 HOH HOH 220 B HOH 620 5 HOH HOH 221 B HOH 621 5 HOH HOH 222 B HOH 622 5 HOH HOH 223 B HOH 623 5 HOH HOH 224 B HOH 624 5 HOH HOH 225 B HOH 625 5 HOH HOH 226 B HOH 626 5 HOH HOH 227 B HOH 627 5 HOH HOH 228 B HOH 628 5 HOH HOH 229 B HOH 629 5 HOH HOH 230 B HOH 630 5 HOH HOH 231 B HOH 631 5 HOH HOH 232 B HOH 632 5 HOH HOH 233 B HOH 633 5 HOH HOH 234 B HOH 634 5 HOH HOH 235 B HOH 635 5 HOH HOH 236 B HOH 636 5 HOH HOH 237 B HOH 637 5 HOH HOH 238 B HOH 638 5 HOH HOH 239 B HOH 639 5 HOH HOH 240 B HOH 640 5 HOH HOH 241 B HOH 641 5 HOH HOH 242 B HOH 642 5 HOH HOH 243 B HOH 643 5 HOH HOH 244 B HOH 644 5 HOH HOH 245 B HOH 645 5 HOH HOH 246 B HOH 646 5 HOH HOH 247 B HOH 647 5 HOH HOH 248 B HOH 648 5 HOH HOH 249 B HOH 649 5 HOH HOH 250 B HOH 650 5 HOH HOH 251 B HOH 651 5 HOH HOH 252 B HOH 652 5 HOH HOH 253 B HOH 653 5 HOH HOH 254 B HOH 654 5 HOH HOH 255 B HOH 655 5 HOH HOH 256 B HOH 656 5 HOH HOH 257 B HOH 657 5 HOH HOH 258 B HOH 658 5 HOH HOH 259 B HOH 659 5 HOH HOH 260 B HOH 660 5 HOH HOH 261 B HOH 661 5 HOH HOH 262 B HOH 662 5 HOH HOH 263 B HOH 663 5 HOH HOH 264 B HOH 664 5 HOH HOH 265 B HOH 665 5 HOH HOH 266 B HOH 666 5 HOH HOH 267 B HOH 667 5 HOH HOH 268 B HOH 668 5 HOH HOH 269 B HOH 669 5 HOH HOH 270 B HOH 670 5 HOH HOH 271 B HOH 671 5 HOH HOH 272 B HOH 672 5 HOH HOH 273 B HOH 673 5 HOH HOH 274 B HOH 674 5 HOH HOH 275 B HOH 675 5 HOH HOH 276 B HOH 676 5 HOH HOH 277 B HOH 677 5 HOH HOH 278 B HOH 678 5 HOH HOH 279 B HOH 679 5 HOH HOH 280 B HOH 680 5 HOH HOH 281 B HOH 681 5 HOH HOH 282 B HOH 682 5 HOH HOH 283 B HOH 683 5 HOH HOH 284 B HOH 684 5 HOH HOH 285 B HOH 685 5 HOH HOH 286 B HOH 686 5 HOH HOH 287 B HOH 687 5 HOH HOH 288 B HOH 688 5 HOH HOH 289 B HOH 689 5 HOH HOH 290 B HOH 690 5 HOH HOH 291 B HOH 691 5 HOH HOH 292 B HOH 692 5 HOH HOH 293 B HOH 693 5 HOH HOH 294 B HOH 694 5 HOH HOH 295 B HOH 695 5 HOH HOH 296 B HOH 696 5 HOH HOH 297 B HOH 697 5 HOH HOH 298 B HOH 698 5 HOH HOH 299 B HOH 699 5 HOH HOH 300 B HOH 700 5 HOH HOH 301 B HOH 701 5 HOH HOH 302 B HOH 702 5 HOH HOH 303 B HOH 703 5 HOH HOH 304 B HOH 704 5 HOH HOH 305 B HOH 705 5 HOH HOH 306 B HOH 706 5 HOH HOH 307 B HOH 707 5 HOH HOH 308 B HOH 708 5 HOH HOH 309 B HOH 709 5 HOH HOH 310 B HOH 710 5 HOH HOH 311 B HOH 711 5 HOH HOH 312 B HOH 712 5 HOH HOH 313 B HOH 713 5 HOH HOH 314 B HOH 715 5 HOH HOH 315 B HOH 716 5 HOH HOH 316 B HOH 717 5 HOH HOH 317 B HOH 718 5 HOH HOH 318 B HOH 719 5 HOH HOH 319 B HOH 720 5 HOH HOH 320 B HOH 721 5 HOH HOH 321 B HOH 723 5 HOH HOH 322 B HOH 724 5 HOH HOH 323 B HOH 725 5 HOH HOH 324 B HOH 726 5 HOH HOH 325 B HOH 727 5 HOH HOH 326 B HOH 728 5 HOH HOH 327 B HOH 729 5 HOH HOH 328 B HOH 730 5 HOH HOH 329 B HOH 731 5 HOH HOH 330 B HOH 732 5 HOH HOH 331 B HOH 734 5 HOH HOH 332 B HOH 735 5 HOH HOH 333 B HOH 736 5 HOH HOH 334 B HOH 737 5 HOH HOH 335 B HOH 738 5 HOH HOH 336 B HOH 739 5 HOH HOH 337 B HOH 740 5 HOH HOH 338 B HOH 741 5 HOH HOH 339 B HOH 742 5 HOH HOH 340 B HOH 743 5 HOH HOH 341 B HOH 745 5 HOH HOH 342 B HOH 747 5 HOH HOH 343 B HOH 748 5 HOH HOH 344 B HOH 749 5 HOH HOH 345 B HOH 752 5 HOH HOH 346 B HOH 753 5 HOH HOH 347 B HOH 754 5 HOH HOH 348 B HOH 755 5 HOH HOH 349 B HOH 756 5 HOH HOH 350 B HOH 757 5 HOH HOH 351 B HOH 758 5 HOH HOH 352 B HOH 760 5 HOH HOH 353 B HOH 761 5 HOH HOH 354 B HOH 762 5 HOH HOH 355 B HOH 764 5 HOH HOH 356 B HOH 765 5 HOH HOH 357 B HOH 766 5 HOH HOH 358 B HOH 767 5 HOH HOH 359 B HOH 768 5 HOH HOH 360 B HOH 771 5 HOH HOH 361 B HOH 773 5 HOH HOH 362 B HOH 775 5 HOH HOH 363 B HOH 776 5 HOH HOH 364 B HOH 778 5 HOH HOH 365 B HOH 781 5 HOH HOH 366 B HOH 782 5 HOH HOH 367 B HOH 783 5 HOH HOH 368 B HOH 784 5 HOH HOH 369 B HOH 788 5 HOH HOH 370 B HOH 790 5 HOH HOH 371 B HOH 792 5 HOH HOH 372 B HOH 793 5 HOH HOH 373 B HOH 795 5 HOH HOH 374 B HOH 796 5 HOH HOH 375 B HOH 797 5 HOH HOH 376 B HOH 798 5 HOH HOH 377 B HOH 799 5 HOH HOH 378 B HOH 801 5 HOH HOH 379 B HOH 802 5 HOH HOH 380 B HOH 803 5 HOH HOH 381 B HOH 804 5 HOH HOH 382 B HOH 805 5 HOH HOH 383 B HOH 806 5 HOH HOH 384 B HOH 807 5 HOH HOH 385 B HOH 809 5 HOH HOH 386 B HOH 810 5 HOH HOH 387 B HOH 811 5 HOH HOH 388 B HOH 813 5 HOH HOH 389 B HOH 814 5 HOH HOH 390 B HOH 817 5 HOH HOH 391 B HOH 818 5 HOH HOH 392 B HOH 819 5 HOH HOH 393 B HOH 820 5 HOH HOH 394 B HOH 821 5 HOH HOH 395 B HOH 822 5 HOH HOH 396 B HOH 823 5 HOH HOH 397 B HOH 824 5 HOH HOH 398 B HOH 828 5 HOH HOH 399 B HOH 829 5 HOH HOH 400 B HOH 830 5 HOH HOH 401 B HOH 831 5 HOH HOH 402 B HOH 832 5 HOH HOH 403 B HOH 833 5 HOH HOH 404 B HOH 835 5 HOH HOH 405 B HOH 837 5 HOH HOH 406 B HOH 839 5 HOH HOH 407 B HOH 841 5 HOH HOH 408 B HOH 843 5 HOH HOH 409 B HOH 844 5 HOH HOH 410 B HOH 845 5 HOH HOH 411 B HOH 846 5 HOH HOH 412 B HOH 847 5 HOH HOH 413 B HOH 850 5 HOH HOH 414 B HOH 851 5 HOH HOH 415 B HOH 853 5 HOH HOH 416 B HOH 856 5 HOH HOH 417 B HOH 857 5 HOH HOH 418 B HOH 859 5 HOH HOH 419 B HOH 861 5 HOH HOH 420 B HOH 862 5 HOH HOH 421 B HOH 863 5 HOH HOH 422 B HOH 864 5 HOH HOH 423 B HOH 865 5 HOH HOH 424 B HOH 867 5 HOH HOH 425 B HOH 869 5 HOH HOH 426 B HOH 870 5 HOH HOH 427 B HOH 871 5 HOH HOH 428 B HOH 872 5 HOH HOH 429 B HOH 873 5 HOH HOH 430 B HOH 877 5 HOH HOH 431 B HOH 878 5 HOH HOH 432 B HOH 880 5 HOH HOH 433 B HOH 881 5 HOH HOH 434 B HOH 882 5 HOH HOH 435 B HOH 883 5 HOH HOH 436 B HOH 884 5 HOH HOH 437 B HOH 887 5 HOH HOH 438 B HOH 888 5 HOH HOH 439 B HOH 889 5 HOH HOH 440 B HOH 890 5 HOH HOH 441 B HOH 891 5 HOH HOH 442 B HOH 892 5 HOH HOH 443 B HOH 893 5 HOH HOH 444 B HOH 894 5 HOH HOH 445 B HOH 896 5 HOH HOH 446 B HOH 897 5 HOH HOH 447 B HOH 898 5 HOH HOH 448 B HOH 900 5 HOH HOH 449 B HOH 902 5 HOH HOH 450 B HOH 903 5 HOH HOH 451 B HOH 904 5 HOH HOH 452 B HOH 905 5 HOH HOH 453 B HOH 906 5 HOH HOH 454 B HOH 908 5 HOH HOH 455 B HOH 910 5 HOH HOH 456 B HOH 912 5 HOH HOH 457 B HOH 914 5 HOH HOH 458 B HOH 915 5 HOH HOH 459 B HOH 916 5 HOH HOH 460 B HOH 917 5 HOH HOH 461 B HOH 919 5 HOH HOH 462 B HOH 921 5 HOH HOH 463 B HOH 922 5 HOH HOH 464 B HOH 923 5 HOH HOH 465 B HOH 926 5 HOH HOH 466 B HOH 928 5 HOH HOH 467 B HOH 930 5 HOH HOH 468 B HOH 932 5 HOH HOH 469 B HOH 933 5 HOH HOH 470 B HOH 936 5 HOH HOH 471 B HOH 937 5 HOH HOH 472 B HOH 940 5 HOH HOH 473 B HOH 941 5 HOH HOH 474 B HOH 945 5 HOH HOH 475 B HOH 946 5 HOH HOH 476 B HOH 948 5 HOH HOH 477 B HOH 951 5 HOH HOH 478 B HOH 952 5 HOH HOH 479 B HOH 953 5 HOH HOH 480 B HOH 954 5 HOH HOH 481 B HOH 955 5 HOH HOH 482 B HOH 956 5 HOH HOH 483 B HOH 957 5 HOH HOH 484 B HOH 958 5 HOH HOH 485 B HOH 959 5 HOH HOH 486 B HOH 960 5 HOH HOH 487 B HOH 961 5 HOH HOH 488 B HOH 963 5 HOH HOH 489 B HOH 964 5 HOH HOH 490 B HOH 965 5 HOH HOH 491 B HOH 968 5 HOH HOH 492 B HOH 969 5 HOH HOH 493 B HOH 971 5 HOH HOH 494 B HOH 972 5 HOH HOH 495 B HOH 973 5 HOH HOH 496 B HOH 976 5 HOH HOH 497 B HOH 977 5 HOH HOH 498 B HOH 978 5 HOH HOH 499 B HOH 980 5 HOH HOH 500 B HOH 981 5 HOH HOH 501 B HOH 982 5 HOH HOH 502 B HOH 984 5 HOH HOH 503 B HOH 985 5 HOH HOH 504 B HOH 986 5 HOH HOH 505 B HOH 988 5 HOH HOH 506 B HOH 994 5 HOH HOH 507 B HOH 995 5 HOH HOH 508 B HOH 996 5 HOH HOH 509 B HOH 997 5 HOH HOH 510 B HOH 998 5 HOH HOH 511 B HOH 999 5 HOH HOH 512 B HOH 1003 5 HOH HOH 513 B HOH 1005 5 HOH HOH 514 B HOH 1012 5 HOH HOH 515 B HOH 1016 5 HOH HOH 516 B HOH 1017 5 HOH HOH 517 B HOH 1018 5 HOH HOH 518 B HOH 1019 5 HOH HOH 519 B HOH 1026 5 HOH HOH 520 B HOH 1027 5 HOH HOH 521 B HOH 1028 5 HOH HOH 522 B HOH 1030 5 HOH HOH 523 B HOH 1031 5 HOH HOH 524 B HOH 1032 5 HOH HOH 525 B HOH 1034 5 HOH HOH 526 B HOH 1037 5 HOH HOH 527 B HOH 1038 5 HOH HOH 528 B HOH 1044 5 HOH HOH 529 B HOH 1046 5 HOH HOH 530 B HOH 1049 5 HOH HOH 531 B HOH 1050 5 HOH HOH 532 B HOH 1052 5 HOH HOH 533 B HOH 1053 5 HOH HOH 534 B HOH 1055 5 HOH HOH 535 B HOH 1057 5 HOH HOH 536 B HOH 1060 5 HOH HOH 537 B HOH 1061 5 HOH HOH 538 B HOH 1062 5 HOH HOH 539 B HOH 1067 5 HOH HOH 540 B HOH 1069 5 HOH HOH 541 B HOH 1070 5 HOH HOH 542 B HOH 1071 5 HOH HOH 543 B HOH 1073 5 HOH HOH 544 B HOH 1075 5 HOH HOH 545 B HOH 1076 5 HOH HOH 546 B HOH 1078 5 HOH HOH 547 B HOH 1082 5 HOH HOH 548 B HOH 1084 5 HOH HOH 549 B HOH 1087 5 HOH HOH 550 B HOH 1089 5 HOH HOH 551 B HOH 1090 5 HOH HOH 552 B HOH 1095 5 HOH HOH 553 B HOH 1099 5 HOH HOH 554 B HOH 1105 5 HOH HOH 555 B HOH 1106 5 HOH HOH 556 B HOH 1108 5 HOH HOH 557 B HOH 1109 5 HOH HOH 558 B HOH 1111 5 HOH HOH 559 B HOH 1114 5 HOH HOH 560 B HOH 1116 5 HOH HOH 561 B HOH 1117 5 HOH HOH 562 B HOH 1118 5 HOH HOH 563 B HOH 1121 5 HOH HOH 564 B HOH 1124 5 HOH HOH 565 B HOH 1126 5 HOH HOH 566 B HOH 1129 5 HOH HOH 567 B HOH 1130 5 HOH HOH 568 B HOH 1134 5 HOH HOH 569 B HOH 1138 5 HOH HOH 570 B HOH 1139 5 HOH HOH 571 B HOH 1141 5 HOH HOH 572 B HOH 1146 5 HOH HOH 573 B HOH 1149 5 HOH HOH 574 B HOH 1150 5 HOH HOH 575 B HOH 1151 5 HOH HOH 576 B HOH 1156 5 HOH HOH 577 B HOH 1164 5 HOH HOH 578 B HOH 1167 5 HOH HOH 579 B HOH 1171 5 HOH HOH 580 B HOH 1172 5 HOH HOH 581 B HOH 1176 5 HOH HOH 582 B HOH 1177 5 HOH HOH 583 B HOH 1178 5 HOH HOH 584 B HOH 1180 5 HOH HOH 585 B HOH 1184 5 HOH HOH 586 B HOH 1186 5 HOH HOH 587 B HOH 1189 5 HOH HOH 588 B HOH 1191 5 HOH HOH 589 B HOH 1194 5 HOH HOH 590 B HOH 1198 5 HOH HOH 591 B HOH 1200 5 HOH HOH 592 B HOH 1203 5 HOH HOH 593 B HOH 1205 5 HOH HOH 594 B HOH 1206 5 HOH HOH 595 B HOH 1207 5 HOH HOH 596 B HOH 1212 5 HOH HOH 597 B HOH 1215 5 HOH HOH 598 B HOH 1218 5 HOH HOH 599 B HOH 1224 5 HOH HOH 600 B HOH 1226 5 HOH HOH 601 B HOH 1227 5 HOH HOH 602 B HOH 1231 5 HOH HOH 603 B HOH 1236 5 HOH HOH 604 B HOH 1237 5 HOH HOH 605 B HOH 1238 5 HOH HOH 606 B HOH 1240 5 HOH HOH 607 B HOH 1243 5 HOH HOH 608 B HOH 1246 5 HOH HOH 609 B HOH 1247 5 HOH HOH 610 B HOH 1249 5 HOH HOH 611 B HOH 1252 5 HOH HOH 612 B HOH 1253 5 HOH HOH 613 B HOH 1254 5 HOH HOH 614 B HOH 1255 5 HOH HOH 615 B HOH 1256 5 HOH HOH 616 B HOH 1257 5 HOH HOH 617 B HOH 1258 5 HOH HOH 618 B HOH 1259 5 HOH HOH 619 B HOH 1260 5 HOH HOH 620 B HOH 1261 5 HOH HOH 621 B HOH 1262 5 HOH HOH 622 B HOH 1263 5 HOH HOH 623 B HOH 1264 5 HOH HOH 624 B HOH 1265 5 HOH HOH 625 B HOH 1266 5 HOH HOH 626 B HOH 1267 5 HOH HOH 627 B HOH 1268 5 HOH HOH 628 B HOH 1269 5 HOH HOH 629 B HOH 1270 5 HOH HOH 630 B HOH 1271 5 HOH HOH 631 B HOH 1272 5 HOH HOH 632 B HOH 1273 5 HOH HOH 633 B HOH 1274 5 HOH HOH 634 B HOH 1275 5 HOH HOH 635 B HOH 1276 5 HOH HOH 636 B HOH 1277 5 HOH HOH 637 B HOH 1278 5 HOH HOH 638 B HOH 1279 5 HOH HOH 639 B HOH 1280 5 HOH HOH 640 B HOH 1281 5 HOH HOH 641 B HOH 1282 5 HOH HOH 642 B HOH 1283 5 HOH HOH 643 B HOH 1284 5 HOH HOH 644 B HOH 1285 5 HOH HOH 645 B HOH 1286 5 HOH HOH 646 B HOH 1287 5 HOH HOH 647 B HOH 1288 5 HOH HOH 648 B HOH 1289 5 HOH HOH 649 B HOH 1290 5 HOH HOH 650 B HOH 1291 5 HOH HOH 651 B HOH 1292 5 HOH HOH 652 B HOH 1293 5 HOH HOH 653 B HOH 1294 5 HOH HOH 654 B HOH 1295 5 HOH HOH 655 B HOH 1296 5 HOH HOH 656 B HOH 1297 5 HOH HOH 657 B HOH 1298 5 HOH HOH 658 B HOH 1299 5 HOH HOH 659 B HOH 1300 5 HOH HOH 660 B HOH 1301 5 HOH HOH 661 B HOH 1302 5 HOH HOH 662 B HOH 1303 5 HOH HOH 663 B HOH 1304 5 HOH HOH 664 B HOH 1305 5 HOH HOH 665 B HOH 1306 5 HOH HOH 666 B HOH 1307 5 HOH HOH 667 B HOH 1308 5 HOH HOH 668 B HOH 1309 5 HOH HOH 669 B HOH 1310 5 HOH HOH 670 B HOH 1311 5 HOH HOH 671 B HOH 1312 5 HOH HOH 672 B HOH 1313 5 HOH HOH 673 B HOH 1314 5 HOH HOH 674 B HOH 1315 5 HOH HOH 675 B HOH 1316 5 HOH HOH 676 B HOH 1317 5 HOH HOH 677 B HOH 1318 5 HOH HOH 678 B HOH 1319 5 HOH HOH 679 B HOH 1320 5 HOH HOH 680 B HOH 1321 5 HOH HOH 681 B HOH 1322 5 HOH HOH 682 B HOH 1323 5 HOH HOH 683 B HOH 1324 5 HOH HOH 684 B HOH 1325 5 HOH HOH 685 B HOH 1326 5 HOH HOH 686 B HOH 1327 5 HOH HOH 687 B HOH 1328 5 HOH HOH 688 B HOH 1329 5 HOH HOH 689 B HOH 1330 5 HOH HOH 690 B HOH 1331 5 HOH HOH 691 B HOH 1332 5 HOH HOH 692 B HOH 1333 5 HOH HOH 693 B HOH 1334 5 HOH HOH 694 B HOH 1335 5 HOH HOH 695 B HOH 1336 5 HOH HOH 696 B HOH 1337 5 HOH HOH 697 B HOH 1338 5 HOH HOH 698 B HOH 1339 5 HOH HOH 699 B HOH 1340 5 HOH HOH 700 B HOH 1341 5 HOH HOH 701 B HOH 1342 5 HOH HOH 702 B HOH 1343 5 HOH HOH 703 B HOH 1344 5 HOH HOH 704 B HOH 1345 5 HOH HOH 705 B HOH 1346 5 HOH HOH 706 B HOH 1347 5 HOH HOH 707 B HOH 1348 5 HOH HOH 708 B HOH 1349 5 HOH HOH 709 B HOH 1350 5 HOH HOH 710 B HOH 1351 5 HOH HOH 711 B HOH 1352 5 HOH HOH 712 B HOH 1353 5 HOH HOH 713 B HOH 1354 5 HOH HOH 714 B HOH 1355 5 HOH HOH 715 B HOH 1356 5 HOH HOH 716 B HOH 1357 5 HOH HOH 717 B HOH 1358 5 HOH HOH 718 B HOH 1359 5 HOH HOH 719 B HOH 1360 5 HOH HOH 720 B HOH 1361 5 HOH HOH 721 B HOH 1362 5 HOH HOH 722 B HOH 1363 5 HOH HOH 723 B HOH 1364 5 HOH HOH 724 B HOH 1365 5 HOH HOH 725 B HOH 1366 5 HOH HOH 726 B HOH 1367 5 HOH HOH 727 B HOH 1368 5 HOH HOH 728 B HOH 1369 5 HOH HOH 729 B HOH 1370 5 HOH HOH 730 B HOH 1371 5 HOH HOH 731 B HOH 1372 5 HOH HOH 732 B HOH 1373 5 HOH HOH 733 B HOH 1374 5 HOH HOH 734 B HOH 1375 5 HOH HOH 735 B HOH 1376 5 HOH HOH 736 B HOH 1377 5 HOH HOH 737 B HOH 1378 5 HOH HOH 738 B HOH 1379 5 HOH HOH 739 B HOH 1380 5 HOH HOH 740 B HOH 1381 5 HOH HOH 741 B HOH 1382 5 HOH HOH 742 B HOH 1383 5 HOH HOH 743 B HOH 1384 5 HOH HOH 744 B HOH 1385 5 HOH HOH 745 B HOH 1386 5 HOH HOH 746 B HOH 1387 5 HOH HOH 747 B HOH 1388 5 HOH HOH 748 B HOH 1389 5 HOH HOH 749 B HOH 1390 5 HOH HOH 750 B HOH 1391 5 HOH HOH 751 B HOH 1392 5 HOH HOH 752 B HOH 1393 5 HOH HOH 753 B HOH 1394 5 HOH HOH 754 B HOH 1395 5 HOH HOH 755 B HOH 1396 5 HOH HOH 756 B HOH 1397 5 HOH HOH 757 B HOH 1398 5 HOH HOH 758 B HOH 1399 5 HOH HOH 759 B HOH 1400 5 HOH HOH 760 B HOH 1401 5 HOH HOH 761 B HOH 1402 5 HOH HOH 762 B HOH 1403 5 HOH HOH 763 B HOH 1404 5 HOH HOH 764 B HOH 1405 5 HOH HOH 765 B HOH 1406 5 HOH HOH 766 B HOH 1407 5 HOH HOH 767 B HOH 1408 5 HOH HOH 768 B HOH 1409 5 HOH HOH 769 B HOH 1410 5 HOH HOH 770 B HOH 1411 5 HOH HOH 771 B HOH 1412 5 HOH HOH 772 B HOH 1413 5 HOH HOH 773 B HOH 1414 5 HOH HOH 774 B HOH 1415 5 HOH HOH 775 B HOH 1416 5 HOH HOH 776 B HOH 1417 5 HOH HOH 777 B HOH 1418 5 HOH HOH 778 B HOH 1419 5 HOH HOH 779 B HOH 1420 5 HOH HOH 780 B HOH 1421 5 HOH HOH 781 B HOH 1422 5 HOH HOH 782 B HOH 1423 5 HOH HOH 783 B HOH 1424 5 HOH HOH 784 B HOH 1425 5 HOH HOH 785 B HOH 1426 5 HOH HOH 786 B HOH 1427 5 HOH HOH 787 B HOH 1428 5 HOH HOH 788 B HOH 1429 5 HOH HOH 789 B HOH 1430 5 HOH HOH 790 B HOH 1431 5 HOH HOH 791 B HOH 1432 5 HOH HOH 792 B HOH 1433 5 HOH HOH 793 B HOH 1434 5 HOH HOH 794 B HOH 1435 5 HOH HOH 795 B HOH 1436 5 HOH HOH 796 B HOH 1437 5 HOH HOH 797 B HOH 1438 5 HOH HOH 798 B HOH 1439 5 HOH HOH 799 B HOH 1440 5 HOH HOH 800 B HOH 1441 5 HOH HOH 801 B HOH 1442 5 HOH HOH 802 B HOH 1443 5 HOH HOH 803 B HOH 1444 5 HOH HOH 804 B HOH 1445 5 HOH HOH 805 B HOH 1446 5 HOH HOH 806 B HOH 1447 5 HOH HOH 807 B HOH 1448 5 HOH HOH 808 B HOH 1449 5 HOH HOH 809 B HOH 1450 5 HOH HOH 810 B HOH 1451 5 HOH HOH 811 B GUA 15 n 1 G 15 B GUA 16 n 2 G 16 B ADE 17 n 3 A 17 B CYT 18 n 4 C 18 B ADE 19 n 5 A 19 B URI 20 n 6 U 20 B ADE 21 n 7 A 21 B URI 22 n 8 U 22 B ADE 23 n 9 A 23 B ADE 24 n 10 A 24 B ADE 25 n 11 A 25 B CYT 26 n 12 C 26 B GUA 27 n 13 G 27 B CYT 28 n 14 C 28 B GUA 29 n 15 G 29 B URI 30 n 16 U 30 B GUA 31 n 17 G 31 B GUA 32 n 18 G 32 B ADE 33 n 19 A 33 B URI 34 n 20 U 34 B ADE 35 n 21 A 35 B URI 36 n 22 U 36 B GUA 37 n 23 G 37 B GUA 38 n 24 G 38 B CYT 39 n 25 C 39 B ADE 40 n 26 A 40 B CYT 41 n 27 C 41 B GUA 42 n 28 G 42 B CYT 43 n 29 C 43 B GUA 44 n 30 G 44 B ADE 45 n 31 A 45 B GUA 46 n 32 G 46 B URI 47 n 33 U 47 B URI 48 n 34 U 48 B URI 49 n 35 U 49 B CYT 50 n 36 C 50 B URI 51 n 37 U 51 B ADE 52 n 38 A 52 B CYT 53 n 39 C 53 B CYT 54 n 40 C 54 B GUA 55 n 41 G 55 B GUA 56 n 42 G 56 B GUA 57 n 43 G 57 B CYT 58 n 44 C 58 B ADE 59 n 45 A 59 B CYT 60 n 46 C 60 B CYT 61 n 47 C 61 B GUA 62 n 48 G 62 B URI 63 n 49 U 63 B ADE 64 n 50 A 64 B ADE 65 n 51 A 65 B ADE 66 n 52 A 66 B URI 67 n 53 U 67 B GUA 68 n 54 G 68 B URI 69 n 55 U 69 B CYT 70 n 56 C 70 B CYT 71 n 57 C 71 B GUA 72 n 58 G 72 B ADE 73 n 59 A 73 B CYT 74 n 60 C 74 B URI 75 n 61 U 75 B ADE 76 n 62 A 76 B URI 77 n 63 U 77 B GUA 78 n 64 G 78 B URI 79 n 65 U 79 B CYT 80 n 66 C 80 B CYT 81 n 67 C 81 B author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B HOH 331 M HOH 1 B U 34 0.065 SIDE CHAIN 1 B G 38 0.091 SIDE CHAIN 1 B A 66 0.056 SIDE CHAIN 1 B B O O HOH HOH 319 319 2.18 1_555 2_555 0.229 0.189 0.189 1.6 20 1125 25620 23099 RANDOM 1 2 MOLECULAR REPLACEMENT Engh & Huber 0.18 5 0.22 1.6 20 611 2113 77 1425 0 0.95 0.005 1.6 20 4FEL 25620 24108 2 2 1 94.1 1.60 1.66 1 97.8 data collection HKL-2000 refinement CNS data reduction CrystalClear data scaling CrystalClear phasing CNS Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N hydrog G-C PAIR B G 15 A O6 G 1 1_555 B C 81 A N4 C 67 1_555 hydrog WATSON-CRICK B G 16 A N1 G 2 1_555 B C 80 A N3 C 66 1_555 hydrog WATSON-CRICK B G 16 A N2 G 2 1_555 B C 80 A O2 C 66 1_555 hydrog WATSON-CRICK B G 16 A O6 G 2 1_555 B C 80 A N4 C 66 1_555 hydrog WATSON-CRICK B G 16 A N1 G 2 1_555 B C 81 A N3 C 67 1_555 hydrog WATSON-CRICK B G 16 A N2 G 2 1_555 B C 81 A O2 C 67 1_555 hydrog WATSON-CRICK B G 16 A O6 G 2 1_555 B C 81 A N4 C 67 1_555 hydrog WATSON-CRICK B A 17 A N1 A 3 1_555 B U 79 A N3 U 65 1_555 hydrog WATSON-CRICK B A 17 A N6 A 3 1_555 B U 79 A O4 U 65 1_555 hydrog WATSON-CRICK B C 18 A N3 C 4 1_555 B G 78 A N1 G 64 1_555 hydrog WATSON-CRICK B C 18 A N4 C 4 1_555 B G 78 A O6 G 64 1_555 hydrog WATSON-CRICK B C 18 A O2 C 4 1_555 B G 78 A N2 G 64 1_555 hydrog WATSON-CRICK B A 19 A N1 A 5 1_555 B U 77 A N3 U 63 1_555 hydrog WATSON-CRICK B A 19 A N6 A 5 1_555 B U 77 A O4 U 63 1_555 hydrog WATSON-CRICK B U 20 A N3 U 6 1_555 B A 76 A N1 A 62 1_555 hydrog WATSON-CRICK B U 20 A O4 U 6 1_555 B A 76 A N6 A 62 1_555 hydrog WATSON-CRICK B A 21 A N1 A 7 1_555 B U 75 A N3 U 61 1_555 hydrog WATSON-CRICK B A 21 A N6 A 7 1_555 B U 75 A O4 U 61 1_555 hydrog WATSON-CRICK B U 22 A N3 U 8 1_555 B A 52 A N1 A 38 1_555 hydrog WATSON-CRICK B U 22 A O4 U 8 1_555 B A 52 A N6 A 38 1_555 hydrog TYPE_10_PAIR B A 23 A N1 A 9 1_555 B G 46 A N2 G 32 1_555 hydrog TYPE_10_PAIR B A 23 A N6 A 9 1_555 B G 46 A N3 G 32 1_555 hydrog A-A MISPAIR B A 25 A N6 A 11 1_555 B A 45 A N3 A 31 1_555 hydrog WATSON-CRICK B C 26 A N3 C 12 1_555 B G 44 A N1 G 30 1_555 hydrog WATSON-CRICK B C 26 A N4 C 12 1_555 B G 44 A O6 G 30 1_555 hydrog WATSON-CRICK B C 26 A O2 C 12 1_555 B G 44 A N2 G 30 1_555 hydrog WATSON-CRICK B G 27 A N1 G 13 1_555 B C 43 A N3 C 29 1_555 hydrog WATSON-CRICK B G 27 A N2 G 13 1_555 B C 43 A O2 C 29 1_555 hydrog WATSON-CRICK B G 27 A O6 G 13 1_555 B C 43 A N4 C 29 1_555 hydrog WATSON-CRICK B C 28 A N3 C 14 1_555 B G 42 A N1 G 28 1_555 hydrog WATSON-CRICK B C 28 A N4 C 14 1_555 B G 42 A O6 G 28 1_555 hydrog WATSON-CRICK B C 28 A O2 C 14 1_555 B G 42 A N2 G 28 1_555 hydrog WATSON-CRICK B G 29 A N1 G 15 1_555 B C 41 A N3 C 27 1_555 hydrog WATSON-CRICK B G 29 A N2 G 15 1_555 B C 41 A O2 C 27 1_555 hydrog WATSON-CRICK B G 29 A O6 G 15 1_555 B C 41 A N4 C 27 1_555 hydrog WATSON-CRICK B U 30 A N3 U 16 1_555 B A 40 A N1 A 26 1_555 hydrog WATSON-CRICK B U 30 A O4 U 16 1_555 B A 40 A N6 A 26 1_555 hydrog WATSON-CRICK B G 31 A N1 G 17 1_555 B C 39 A N3 C 25 1_555 hydrog WATSON-CRICK B G 31 A N2 G 17 1_555 B C 39 A O2 C 25 1_555 hydrog WATSON-CRICK B G 31 A O6 G 17 1_555 B C 39 A N4 C 25 1_555 hydrog TYPE_5_PAIR B A 33 A N1 A 19 1_555 B A 66 A N6 A 52 1_555 hydrog TYPE_5_PAIR B A 33 A N6 A 19 1_555 B A 66 A N7 A 52 1_555 hydrog REVERSED HOOGSTEEN B U 34 A N3 U 20 1_555 B A 65 A N7 A 51 1_555 hydrog REVERSED HOOGSTEEN B U 34 A O2 U 20 1_555 B A 65 A N6 A 51 1_555 hydrog TYPE_5_PAIR B A 35 A N6 A 21 1_555 B A 64 A N1 A 50 1_555 hydrog TYPE_5_PAIR B A 35 A N7 A 21 1_555 B A 64 A N6 A 50 1_555 hydrog WATSON-CRICK B G 37 A N1 G 23 1_555 B C 61 A N3 C 47 1_555 hydrog WATSON-CRICK B G 37 A N2 G 23 1_555 B C 61 A O2 C 47 1_555 hydrog WATSON-CRICK B G 37 A O6 G 23 1_555 B C 61 A N4 C 47 1_555 hydrog WATSON-CRICK B G 38 A N1 G 24 1_555 B C 60 A N3 C 46 1_555 hydrog WATSON-CRICK B G 38 A N2 G 24 1_555 B C 60 A O2 C 46 1_555 hydrog WATSON-CRICK B G 38 A O6 G 24 1_555 B C 60 A N4 C 46 1_555 hydrog TYPE_10_PAIR B G 38 A N2 G 24 1_555 B A 66 A N1 A 52 1_555 hydrog TYPE_10_PAIR B G 38 A N3 G 24 1_555 B A 66 A N6 A 52 1_555 hydrog WATSON-CRICK B G 46 A N1 G 32 1_555 B C 53 A N3 C 39 1_555 hydrog WATSON-CRICK B G 46 A N2 G 32 1_555 B C 53 A O2 C 39 1_555 hydrog WATSON-CRICK B G 46 A O6 G 32 1_555 B C 53 A N4 C 39 1_555 hydrog U-U MISPAIR B U 47 A N3 U 33 1_555 B U 51 A O4 U 37 1_555 hydrog U-A PAIR B U 49 A N3 U 35 1_555 B A 76 A N3 A 62 1_555 hydrog C-U MISPAIR B C 50 A N4 C 36 1_555 B U 75 A O2 U 61 1_555 hydrog WATSON-CRICK B C 54 A N3 C 40 1_555 B G 72 A N1 G 58 1_555 hydrog WATSON-CRICK B C 54 A N4 C 40 1_555 B G 72 A O6 G 58 1_555 hydrog WATSON-CRICK B C 54 A O2 C 40 1_555 B G 72 A N2 G 58 1_555 hydrog WATSON-CRICK B G 55 A N1 G 41 1_555 B C 71 A N3 C 57 1_555 hydrog WATSON-CRICK B G 55 A N2 G 41 1_555 B C 71 A O2 C 57 1_555 hydrog WATSON-CRICK B G 55 A O6 G 41 1_555 B C 71 A N4 C 57 1_555 hydrog WATSON-CRICK B G 56 A N1 G 42 1_555 B C 70 A N3 C 56 1_555 hydrog WATSON-CRICK B G 56 A N2 G 42 1_555 B C 70 A O2 C 56 1_555 hydrog WATSON-CRICK B G 56 A O6 G 42 1_555 B C 70 A N4 C 56 1_555 hydrog TYPE_28_PAIR B G 57 A N1 G 43 1_555 B U 69 A O2 U 55 1_555 hydrog TYPE_28_PAIR B G 57 A O6 G 43 1_555 B U 69 A N3 U 55 1_555 hydrog WATSON-CRICK B C 58 A N3 C 44 1_555 B G 68 A N1 G 54 1_555 hydrog WATSON-CRICK B C 58 A N4 C 44 1_555 B G 68 A O6 G 54 1_555 hydrog WATSON-CRICK B C 58 A O2 C 44 1_555 B G 68 A N2 G 54 1_555 hydrog WATSON-CRICK B A 59 A N1 A 45 1_555 B U 67 A N3 U 53 1_555 hydrog WATSON-CRICK B A 59 A N6 A 45 1_555 B U 67 A O4 U 53 1_555 hydrog C-A MISPAIR B C 61 A O2 C 47 1_555 B A 65 A N6 A 51 1_555 hydrog G-U MISPAIR B G 62 A N2 G 48 1_555 B U 63 A O4 U 49 1_555 RNA three-way junction with distal tertiary interaction, genetic regulatory element, hypoxanthine, RNA 4FEL PDB 1 4FEL 15 81 4FEL 15 81 4FEL B 1 1 67 BINDING SITE FOR RESIDUE HPA B 101 B HPA 101 Software 9 BINDING SITE FOR RESIDUE ACT B 102 B ACT 102 Software 7 BINDING SITE FOR RESIDUE NCO B 103 B NCO 103 Software 9 BINDING SITE FOR RESIDUE NCO B 104 B NCO 104 Software 10 BINDING SITE FOR RESIDUE NCO B 105 B NCO 105 Software 11 BINDING SITE FOR RESIDUE NCO B 106 B NCO 106 Software 9 BINDING SITE FOR RESIDUE NCO B 107 B NCO 107 Software 10 BINDING SITE FOR RESIDUE NCO B 108 B NCO 108 Software 8 BINDING SITE FOR RESIDUE NCO B 109 B NCO 109 Software 4 BINDING SITE FOR RESIDUE NCO B 110 B NCO 110 Software 7 BINDING SITE FOR RESIDUE NCO B 111 B NCO 111 Software 8 B A 21 A A 7 9 1_555 B U 22 A U 8 9 1_555 B U 47 A U 33 9 1_555 B U 51 A U 37 9 1_555 B A 52 A A 38 9 1_555 B A 73 A A 59 9 1_555 B C 74 A C 60 9 1_555 B U 75 A U 61 9 1_555 B HOH 252 M HOH 9 1_555 B G 32 A G 18 7 1_555 B A 33 A A 19 7 1_555 B G 38 A G 24 7 1_555 B C 39 A C 25 7 1_555 B A 66 A A 52 7 1_555 B U 67 A U 53 7 1_555 B HOH 212 M HOH 7 1_555 B G 29 A G 15 9 4_545 B U 30 A U 16 9 4_545 B A 66 A A 52 9 1_555 B U 67 A U 53 9 1_555 B HOH 313 M HOH 9 1_555 B HOH 362 M HOH 9 1_555 B HOH 429 M HOH 9 1_555 B HOH 566 M HOH 9 4_545 B HOH 673 M HOH 9 1_555 B G 38 A G 24 10 1_555 B G 56 A G 42 10 1_555 B G 57 A G 43 10 4_556 B C 58 A C 44 10 4_556 B HOH 271 M HOH 10 1_555 B HOH 287 M HOH 10 4_546 B HOH 317 M HOH 10 1_555 B HOH 321 M HOH 10 4_556 B HOH 333 M HOH 10 1_555 B HOH 754 M HOH 10 1_555 B C 39 A C 25 11 1_555 B G 55 A G 41 11 1_555 B G 56 A G 42 11 1_555 B G 57 A G 43 11 1_555 B G 68 A G 54 11 1_555 B U 69 A U 55 11 1_555 B HOH 224 M HOH 11 1_555 B HOH 308 M HOH 11 1_555 B HOH 348 M HOH 11 1_555 B HOH 434 M HOH 11 1_555 B HOH 467 M HOH 11 1_555 B U 30 A U 16 9 1_555 B G 31 A G 17 9 1_555 B G 32 A G 18 9 1_555 B A 65 A A 51 9 1_555 B A 66 A A 52 9 1_555 B HOH 214 M HOH 9 1_555 B HOH 227 M HOH 9 1_555 B HOH 231 M HOH 9 1_555 B HOH 681 M HOH 9 1_555 B G 37 A G 23 10 1_555 B G 38 A G 24 10 1_555 B G 57 A G 43 10 1_555 B HOH 258 M HOH 10 1_555 B HOH 318 M HOH 10 1_555 B HOH 381 M HOH 10 1_555 B HOH 478 M HOH 10 1_555 B HOH 642 M HOH 10 1_555 B HOH 649 M HOH 10 4_546 B HOH 711 M HOH 10 1_555 B C 41 A C 27 8 1_555 B G 42 A G 28 8 1_555 B C 53 A C 39 8 1_555 B C 54 A C 40 8 1_555 B HOH 343 M HOH 8 1_555 B HOH 415 M HOH 8 1_555 B HOH 623 M HOH 8 1_555 B HOH 640 M HOH 8 1_555 B A 45 A A 31 4 1_555 B G 46 A G 32 4 1_555 B U 47 A U 33 4 1_555 B HOH 395 M HOH 4 1_555 B A 21 A A 7 7 1_555 B U 22 A U 8 7 1_555 B HOH 396 M HOH 7 1_555 B HOH 422 M HOH 7 1_555 B HOH 559 M HOH 7 1_555 B HOH 685 M HOH 7 1_555 B HOH 730 M HOH 7 1_555 B U 36 A U 22 8 4_546 B G 42 A G 28 8 1_545 B C 43 A C 29 8 1_545 B G 72 A G 58 8 1_555 B A 73 A A 59 8 1_555 B HOH 461 M HOH 8 1_555 B HOH 542 M HOH 8 1_555 B HOH 778 M HOH 8 1_555 5 C 1 2 1