0.017064 0.000000 0.000000 0.000000 0.007160 0.000000 0.000000 0.000000 0.007569 0.00000 0.00000 0.00000 Meinke, G. Bohm, A. Bullock, P.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 58.604 139.672 132.112 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C N 493 N C N 494 N C N 495 N O N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing US J.Virol. JOVIAM 0825 0022-538X 87 2923 2934 10.1128/JVI.02549-12 23269808 Analysis of the Costructure of the Simian Virus 40 T-Antigen Origin Binding Domain with Site I Reveals a Correlation between GAGGC Spacing and Spiral Assembly. 2013 10.2210/pdb4fgn/pdb pdb_00004fgn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 X29A NSLS 0.9792 SYNCHROTRON NSLS BEAMLINE X29A 15240.476 Large T antigen 3.6.4.- origin binding domain, UNP residues 131-260 2 man polymer 6963.528 Site I DNA 1 syn polymer 7158.603 Site I DNA 1 syn polymer 18.015 water 3 nat water LT, LT-AG no no GSKVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAI NNYAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPE GSKVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAI NNYAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPE A,B polypeptide(L) no no (DA)(DG)(DG)(DC)(DC)(DT)(DC)(DC)(DA)(DA)(DA)(DA)(DA)(DA)(DG)(DC)(DC)(DT)(DC)(DC) (DT)(DC)(DA) AGGCCTCCAAAAAAGCCTCCTCA Z polydeoxyribonucleotide no no (DG)(DA)(DG)(DG)(DA)(DG)(DG)(DC)(DT)(DT)(DT)(DT)(DT)(DT)(DG)(DG)(DA)(DG)(DG)(DC) (DC)(DT)(DT) GAGGAGGCTTTTTTGGAGGCCTT Y polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n SV40 sample 10633 Simian virus 40 469008 Escherichia coli Bl21 (DE3) 1 3.03 59.41 VAPOR DIFFUSION, HANGING DROP 4.6 0.1M sodium acetate pH 4.6, .2M ammonium sulfate, 30 % Peg 4000, 10 mM CaCl2, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 -3.003 1 20 Z 1 Y 22 -10.187 Z_DA1:DT22_Y 1 10.378 0.958 0.720 -0.003 20.953 1 19 Z 2 Y 21 -8.330 Z_DG2:DC21_Y 2 7.859 0.727 0.328 0.098 15.207 1 19 Z 3 Y 20 -3.070 Z_DG3:DC20_Y 3 -15.141 0.098 0.764 0.300 0.130 1 19 Z 4 Y 19 -4.802 Z_DC4:DG19_Y 4 -16.534 0.546 0.347 -0.362 -6.545 1 19 Z 5 Y 18 8.520 Z_DC5:DG18_Y 5 0.461 0.680 0.649 -0.298 13.875 1 20 Z 6 Y 17 -9.780 Z_DT6:DA17_Y 6 -0.918 -1.190 0.124 -0.208 8.852 1 19 Z 7 Y 16 -3.820 Z_DC7:DG16_Y 7 -3.808 0.193 -0.407 -0.248 14.391 1 19 Z 8 Y 15 -9.777 Z_DC8:DG15_Y 8 3.329 -0.343 -0.619 0.014 34.447 1 20 Z 9 Y 14 5.065 Z_DA9:DT14_Y 9 -5.531 0.580 0.631 -0.041 17.007 1 20 Z 10 Y 13 0.550 Z_DA10:DT13_Y 10 -2.776 -0.170 -0.395 0.149 11.548 1 20 Z 11 Y 12 3.894 Z_DA11:DT12_Y 11 1.649 -0.197 -0.295 0.194 9.465 1 20 Z 12 Y 11 1.052 Z_DA12:DT11_Y 12 -7.428 -0.051 -0.125 -0.066 11.523 1 20 Z 13 Y 10 4.487 Z_DA13:DT10_Y 13 -14.833 0.073 0.101 -0.032 7.223 1 20 Z 14 Y 9 -6.075 Z_DA14:DT9_Y 14 -3.732 0.244 -0.027 -0.006 -7.013 1 19 Z 15 Y 8 -4.802 Z_DG15:DC8_Y 15 -17.385 -0.667 0.202 -0.176 -5.912 1 19 Z 16 Y 7 -2.382 Z_DC16:DG7_Y 16 -3.874 0.141 0.195 -0.162 -13.740 1 19 Z 17 Y 6 8.338 Z_DC17:DG6_Y 17 14.522 0.473 0.894 0.022 17.433 1 20 Z 18 Y 5 -4.740 Z_DT18:DA5_Y 18 -4.519 -0.293 0.231 -0.050 10.670 1 19 Z 19 Y 4 4.933 Z_DC19:DG4_Y 19 -15.931 1.097 0.315 -0.361 9.206 1 Z 20 Y 3 7.551 Z_DC20:DG3_Y 20 -1.153 -0.024 -0.172 0.485 18.496 1 20 Z 21 Y 2 6.665 Z_DT21:DA2_Y 21 -10.680 0.222 -0.415 -0.061 12.025 Z 22 Y 1 74.235 Z_DC22:DG1_Y 22 10.804 -0.601 -0.413 -4.796 3.048 29.517 Z Z 1 2 -3.655 Y Y 22 21 2.952 -1.857 0.660 -0.783 ZZ_DA1DG2:DC21DT22_YY 1 3.272 -6.440 29.282 -1.173 -0.654 3.624 32.283 Z Z 2 3 -9.821 Y Y 21 20 3.590 -5.430 0.771 -0.965 ZZ_DG2DG3:DC20DC21_YY 2 -2.703 4.888 31.723 -0.663 -1.920 3.524 39.049 Z Z 3 4 -2.038 Y Y 20 19 3.494 -1.356 0.126 -1.735 ZZ_DG3DC4:DG19DC20_YY 3 6.597 -9.916 38.486 -2.420 0.671 3.170 35.654 Z Z 4 5 8.950 Y Y 19 18 3.229 5.452 1.495 -1.007 ZZ_DC4DC5:DG18DG19_YY 4 3.447 -5.659 35.084 -2.425 -1.949 1.905 24.008 Z Z 5 6 17.893 Y Y 18 17 2.863 7.226 -1.763 -0.724 ZZ_DC5DT6:DA17DG18_YY 5 6.795 -16.827 21.890 -3.523 5.915 3.280 38.493 Z Z 6 7 3.442 Y Y 17 16 3.301 2.265 0.126 -0.258 ZZ_DT6DC7:DG16DA17_YY 6 3.370 -5.120 38.286 -0.675 0.230 3.245 33.837 Z Z 7 8 7.653 Y Y 16 15 3.166 4.441 0.565 0.680 ZZ_DC7DC8:DG15DG16_YY 7 1.314 -2.264 33.527 0.463 -0.761 2.976 45.317 Z Z 8 9 10.863 Y Y 15 14 2.905 8.232 -0.233 0.892 ZZ_DC8DA9:DT14DG15_YY 8 -12.254 16.170 42.965 0.480 -0.706 3.731 20.987 Z Z 9 10 0.684 Y Y 14 13 3.796 0.248 -0.072 -0.764 ZZ_DA9DA10:DT13DT14_YY 9 3.247 -8.949 20.736 -2.218 1.789 3.354 39.502 Z Z 10 11 -6.480 Y Y 13 12 3.389 -4.366 -0.069 0.096 ZZ_DA10DA11:DT12DT13_YY 10 -3.463 5.139 39.123 0.675 -0.320 3.289 39.779 Z Z 11 12 -0.272 Y Y 12 11 3.275 -0.185 -0.396 -0.244 ZZ_DA11DA12:DT11DT12_YY 11 -1.630 2.396 39.747 -0.337 0.392 3.229 36.549 Z Z 12 13 -12.421 Y Y 11 10 3.238 -7.735 0.255 -0.297 ZZ_DA12DA13:DT10DT11_YY 12 -0.143 0.229 35.748 0.594 -0.426 3.221 36.829 Z Z 13 14 -0.344 Y Y 10 9 3.219 -0.217 -0.060 -0.651 ZZ_DA13DA14:DT9DT10_YY 13 0.516 -0.816 36.825 -1.001 0.164 3.768 33.972 Z Z 14 15 -7.413 Y Y 9 8 3.688 -4.315 0.017 -0.983 ZZ_DA14DG15:DC8DT9_YY 14 -2.756 4.734 33.595 -0.890 -0.534 2.872 37.215 Z Z 15 16 7.712 Y Y 8 7 3.055 4.908 -0.562 -1.226 ZZ_DG15DC16:DG7DC8_YY 15 0.164 -0.257 36.901 -2.515 0.900 3.511 40.735 Z Z 16 17 -3.094 Y Y 7 6 3.605 -2.150 1.174 -0.480 ZZ_DC16DC17:DG6DG7_YY 16 -3.648 5.249 40.524 -0.431 -2.126 2.010 24.588 Z Z 17 18 -27.447 Y Y 6 5 2.622 -10.918 -1.077 -0.757 ZZ_DC17DT18:DA5DG6_YY 17 9.943 -24.996 19.715 0.873 4.943 3.626 43.735 Z Z 18 19 -5.288 Y Y 5 4 3.503 -3.926 1.469 0.043 ZZ_DT18DC19:DG4DA5_YY 18 5.042 -6.791 43.288 0.469 -1.444 2.780 34.148 Z Z 19 20 22.023 Y Y 4 3 2.976 12.576 0.023 0.128 ZZ_DC19DC20:DG3DG4_YY 19 5.992 -10.492 31.255 -1.618 0.835 2.911 31.618 Z Z 20 21 14.023 Y Y 3 2 2.981 7.564 -0.535 0.242 ZZ_DC20DT21:DA2DG3_YY 20 2.233 -4.141 30.643 -0.838 1.360 0.433 -178.882 Z Z 21 22 -4.524 Y Y 2 1 1.128 9.037 -1.989 -3.848 ZZ_DT21DC22:DG1DA2_YY 21 -176.563 -88.382 -139.154 1.917 -1.135 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Database references Data collection Database references Refinement description 1 0 2013-01-23 1 1 2013-02-27 1 2 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details apo-large T-antigen origin binding domain large T-antigen origin binding domain in complex with subset of Site II DNA (P1, P3) large T-antigen origin binding domain in complex with Site II DNA (P1-P4) RCSB Y RCSB 2012-06-04 REL REL HOH water This DNA sequence is termed Site 1 in SV40 10633 Simian virus 40 sample This DNA sequence is from sv40 site I 10633 Simian virus 40 sample 2NTC PDB experimental model HOH 1 4 HOH HOH 301 A HOH 2 4 HOH HOH 302 A HOH 3 4 HOH HOH 301 B n 1 129 A n 2 130 A n 3 131 A n 4 132 A GLU 133 n 5 GLU 133 A ASP 134 n 6 ASP 134 A PRO 135 n 7 PRO 135 A LYS 136 n 8 LYS 136 A ASP 137 n 9 ASP 137 A PHE 138 n 10 PHE 138 A PRO 139 n 11 PRO 139 A SER 140 n 12 SER 140 A GLU 141 n 13 GLU 141 A LEU 142 n 14 LEU 142 A LEU 143 n 15 LEU 143 A SER 144 n 16 SER 144 A PHE 145 n 17 PHE 145 A LEU 146 n 18 LEU 146 A SER 147 n 19 SER 147 A HIS 148 n 20 HIS 148 A ALA 149 n 21 ALA 149 A VAL 150 n 22 VAL 150 A PHE 151 n 23 PHE 151 A SER 152 n 24 SER 152 A ASN 153 n 25 ASN 153 A ARG 154 n 26 ARG 154 A THR 155 n 27 THR 155 A LEU 156 n 28 LEU 156 A ALA 157 n 29 ALA 157 A CYS 158 n 30 CYS 158 A PHE 159 n 31 PHE 159 A ALA 160 n 32 ALA 160 A ILE 161 n 33 ILE 161 A TYR 162 n 34 TYR 162 A THR 163 n 35 THR 163 A THR 164 n 36 THR 164 A LYS 165 n 37 LYS 165 A GLU 166 n 38 GLU 166 A LYS 167 n 39 LYS 167 A ALA 168 n 40 ALA 168 A ALA 169 n 41 ALA 169 A LEU 170 n 42 LEU 170 A LEU 171 n 43 LEU 171 A TYR 172 n 44 TYR 172 A LYS 173 n 45 LYS 173 A LYS 174 n 46 LYS 174 A ILE 175 n 47 ILE 175 A MET 176 n 48 MET 176 A GLU 177 n 49 GLU 177 A LYS 178 n 50 LYS 178 A TYR 179 n 51 TYR 179 A SER 180 n 52 SER 180 A VAL 181 n 53 VAL 181 A THR 182 n 54 THR 182 A PHE 183 n 55 PHE 183 A ILE 184 n 56 ILE 184 A SER 185 n 57 SER 185 A ARG 186 n 58 ARG 186 A HIS 187 n 59 HIS 187 A ASN 188 n 60 ASN 188 A SER 189 n 61 SER 189 A TYR 190 n 62 TYR 190 A ASN 191 n 63 ASN 191 A HIS 192 n 64 HIS 192 A ASN 193 n 65 ASN 193 A ILE 194 n 66 ILE 194 A LEU 195 n 67 LEU 195 A PHE 196 n 68 PHE 196 A PHE 197 n 69 PHE 197 A LEU 198 n 70 LEU 198 A THR 199 n 71 THR 199 A PRO 200 n 72 PRO 200 A HIS 201 n 73 HIS 201 A ARG 202 n 74 ARG 202 A HIS 203 n 75 HIS 203 A ARG 204 n 76 ARG 204 A VAL 205 n 77 VAL 205 A SER 206 n 78 SER 206 A ALA 207 n 79 ALA 207 A ILE 208 n 80 ILE 208 A ASN 209 n 81 ASN 209 A ASN 210 n 82 ASN 210 A TYR 211 n 83 TYR 211 A ALA 212 n 84 ALA 212 A GLN 213 n 85 GLN 213 A LYS 214 n 86 LYS 214 A LEU 215 n 87 LEU 215 A CYS 216 n 88 CYS 216 A THR 217 n 89 THR 217 A PHE 218 n 90 PHE 218 A SER 219 n 91 SER 219 A PHE 220 n 92 PHE 220 A LEU 221 n 93 LEU 221 A ILE 222 n 94 ILE 222 A CYS 223 n 95 CYS 223 A LYS 224 n 96 LYS 224 A GLY 225 n 97 GLY 225 A VAL 226 n 98 VAL 226 A ASN 227 n 99 ASN 227 A LYS 228 n 100 LYS 228 A GLU 229 n 101 GLU 229 A TYR 230 n 102 TYR 230 A LEU 231 n 103 LEU 231 A MET 232 n 104 MET 232 A TYR 233 n 105 TYR 233 A SER 234 n 106 SER 234 A ALA 235 n 107 ALA 235 A LEU 236 n 108 LEU 236 A THR 237 n 109 THR 237 A ARG 238 n 110 ARG 238 A ASP 239 n 111 ASP 239 A PRO 240 n 112 PRO 240 A PHE 241 n 113 PHE 241 A SER 242 n 114 SER 242 A VAL 243 n 115 VAL 243 A ILE 244 n 116 ILE 244 A GLU 245 n 117 GLU 245 A GLU 246 n 118 GLU 246 A SER 247 n 119 SER 247 A LEU 248 n 120 LEU 248 A PRO 249 n 121 PRO 249 A GLY 250 n 122 GLY 250 A GLY 251 n 123 GLY 251 A LEU 252 n 124 LEU 252 A LYS 253 n 125 LYS 253 A GLU 254 n 126 GLU 254 A HIS 255 n 127 HIS 255 A ASP 256 n 128 ASP 256 A PHE 257 n 129 PHE 257 A ASN 258 n 130 ASN 258 A n 131 259 A n 132 260 A n 1 129 B n 2 130 B n 3 131 B n 4 132 B n 5 133 B ASP 134 n 6 ASP 134 B PRO 135 n 7 PRO 135 B LYS 136 n 8 LYS 136 B ASP 137 n 9 ASP 137 B PHE 138 n 10 PHE 138 B PRO 139 n 11 PRO 139 B SER 140 n 12 SER 140 B GLU 141 n 13 GLU 141 B LEU 142 n 14 LEU 142 B LEU 143 n 15 LEU 143 B SER 144 n 16 SER 144 B PHE 145 n 17 PHE 145 B LEU 146 n 18 LEU 146 B SER 147 n 19 SER 147 B HIS 148 n 20 HIS 148 B ALA 149 n 21 ALA 149 B VAL 150 n 22 VAL 150 B PHE 151 n 23 PHE 151 B SER 152 n 24 SER 152 B ASN 153 n 25 ASN 153 B ARG 154 n 26 ARG 154 B THR 155 n 27 THR 155 B LEU 156 n 28 LEU 156 B ALA 157 n 29 ALA 157 B CYS 158 n 30 CYS 158 B PHE 159 n 31 PHE 159 B ALA 160 n 32 ALA 160 B ILE 161 n 33 ILE 161 B TYR 162 n 34 TYR 162 B THR 163 n 35 THR 163 B THR 164 n 36 THR 164 B LYS 165 n 37 LYS 165 B GLU 166 n 38 GLU 166 B LYS 167 n 39 LYS 167 B ALA 168 n 40 ALA 168 B ALA 169 n 41 ALA 169 B LEU 170 n 42 LEU 170 B LEU 171 n 43 LEU 171 B TYR 172 n 44 TYR 172 B LYS 173 n 45 LYS 173 B LYS 174 n 46 LYS 174 B ILE 175 n 47 ILE 175 B MET 176 n 48 MET 176 B GLU 177 n 49 GLU 177 B LYS 178 n 50 LYS 178 B TYR 179 n 51 TYR 179 B SER 180 n 52 SER 180 B VAL 181 n 53 VAL 181 B THR 182 n 54 THR 182 B PHE 183 n 55 PHE 183 B ILE 184 n 56 ILE 184 B SER 185 n 57 SER 185 B ARG 186 n 58 ARG 186 B HIS 187 n 59 HIS 187 B ASN 188 n 60 ASN 188 B SER 189 n 61 SER 189 B TYR 190 n 62 TYR 190 B ASN 191 n 63 ASN 191 B HIS 192 n 64 HIS 192 B ASN 193 n 65 ASN 193 B ILE 194 n 66 ILE 194 B LEU 195 n 67 LEU 195 B PHE 196 n 68 PHE 196 B PHE 197 n 69 PHE 197 B LEU 198 n 70 LEU 198 B THR 199 n 71 THR 199 B PRO 200 n 72 PRO 200 B HIS 201 n 73 HIS 201 B ARG 202 n 74 ARG 202 B HIS 203 n 75 HIS 203 B ARG 204 n 76 ARG 204 B VAL 205 n 77 VAL 205 B SER 206 n 78 SER 206 B ALA 207 n 79 ALA 207 B ILE 208 n 80 ILE 208 B ASN 209 n 81 ASN 209 B ASN 210 n 82 ASN 210 B TYR 211 n 83 TYR 211 B ALA 212 n 84 ALA 212 B GLN 213 n 85 GLN 213 B LYS 214 n 86 LYS 214 B LEU 215 n 87 LEU 215 B CYS 216 n 88 CYS 216 B THR 217 n 89 THR 217 B PHE 218 n 90 PHE 218 B SER 219 n 91 SER 219 B PHE 220 n 92 PHE 220 B LEU 221 n 93 LEU 221 B ILE 222 n 94 ILE 222 B CYS 223 n 95 CYS 223 B LYS 224 n 96 LYS 224 B GLY 225 n 97 GLY 225 B VAL 226 n 98 VAL 226 B ASN 227 n 99 ASN 227 B LYS 228 n 100 LYS 228 B GLU 229 n 101 GLU 229 B TYR 230 n 102 TYR 230 B LEU 231 n 103 LEU 231 B MET 232 n 104 MET 232 B TYR 233 n 105 TYR 233 B SER 234 n 106 SER 234 B ALA 235 n 107 ALA 235 B LEU 236 n 108 LEU 236 B THR 237 n 109 THR 237 B ARG 238 n 110 ARG 238 B ASP 239 n 111 ASP 239 B PRO 240 n 112 PRO 240 B PHE 241 n 113 PHE 241 B SER 242 n 114 SER 242 B VAL 243 n 115 VAL 243 B ILE 244 n 116 ILE 244 B GLU 245 n 117 GLU 245 B GLU 246 n 118 GLU 246 B SER 247 n 119 SER 247 B LEU 248 n 120 LEU 248 B PRO 249 n 121 PRO 249 B GLY 250 n 122 GLY 250 B GLY 251 n 123 GLY 251 B LEU 252 n 124 LEU 252 B LYS 253 n 125 LYS 253 B GLU 254 n 126 GLU 254 B HIS 255 n 127 HIS 255 B ASP 256 n 128 ASP 256 B PHE 257 n 129 PHE 257 B n 130 258 B n 131 259 B n 132 260 B DA 1 n 1 DA 1 Z DG 2 n 2 DG 2 Z DG 3 n 3 DG 3 Z DC 4 n 4 DC 4 Z DC 5 n 5 DC 5 Z DT 6 n 6 DT 6 Z DC 7 n 7 DC 7 Z DC 8 n 8 DC 8 Z DA 9 n 9 DA 9 Z DA 10 n 10 DA 10 Z DA 11 n 11 DA 11 Z DA 12 n 12 DA 12 Z DA 13 n 13 DA 13 Z DA 14 n 14 DA 14 Z DG 15 n 15 DG 15 Z DC 16 n 16 DC 16 Z DC 17 n 17 DC 17 Z DT 18 n 18 DT 18 Z DC 19 n 19 DC 19 Z DC 20 n 20 DC 20 Z DT 21 n 21 DT 21 Z DC 22 n 22 DC 22 Z DA 23 n 23 DA 23 Z DG 1 n 1 DG 1 Y DA 2 n 2 DA 2 Y DG 3 n 3 DG 3 Y DG 4 n 4 DG 4 Y DA 5 n 5 DA 5 Y DG 6 n 6 DG 6 Y DG 7 n 7 DG 7 Y DC 8 n 8 DC 8 Y DT 9 n 9 DT 9 Y DT 10 n 10 DT 10 Y DT 11 n 11 DT 11 Y DT 12 n 12 DT 12 Y DT 13 n 13 DT 13 Y DT 14 n 14 DT 14 Y DG 15 n 15 DG 15 Y DG 16 n 16 DG 16 Y DA 17 n 17 DA 17 Y DG 18 n 18 DG 18 Y DG 19 n 19 DG 19 Y DC 20 n 20 DC 20 Y DC 21 n 21 DC 21 Y DT 22 n 22 DT 22 Y DT 23 n 23 DT 23 Y 4.3163 -2.8324 -1.0743 14.3332 2.3666 11.8625 0.0745 -0.2827 -0.9794 0.8123 -0.7172 0.6496 0.5555 -0.3503 0.6427 0.3479 -0.0302 0.2384 0.6030 -0.0679 0.8232 refined 1.5594 42.2545 -0.2878 X-RAY DIFFRACTION 10.8722 2.9635 1.3241 11.1175 0.2369 3.7342 0.9076 -0.6183 -0.5681 -0.2245 -0.7337 1.4421 1.6383 -1.9481 -0.1738 1.2112 -0.4074 -0.4374 1.5418 -0.1961 0.7115 refined 3.1383 5.6793 -17.5268 X-RAY DIFFRACTION 4.5856 -5.0544 -0.7161 8.9030 3.2412 3.2417 0.6374 0.3198 0.9739 -1.2909 -0.4605 -1.7934 -0.3216 0.3427 -0.1769 1.0534 0.2711 0.1618 0.6879 -0.0419 0.7649 refined 17.6876 27.3756 -20.0936 X-RAY DIFFRACTION 2.5926 -2.6339 1.4469 4.0713 0.4706 4.1954 0.9031 0.5819 0.0307 -1.4441 -0.7736 0.2976 -0.2765 0.1121 -0.1295 0.9832 0.2006 0.2339 0.6251 -0.0533 0.7814 refined 16.4447 29.9636 -20.6853 X-RAY DIFFRACTION A 133 A 258 X-RAY DIFFRACTION 1 B 134 B 257 X-RAY DIFFRACTION 2 Z 1 Z 23 X-RAY DIFFRACTION 3 Y 1 Y 23 X-RAY DIFFRACTION 4 author_and_software_defined_assembly PISA 4 tetrameric 4860 -34 19360 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 224 A O LYS 96 A N ALA 160 A N ALA 32 A N LEU 156 A N LEU 28 A O HIS 203 A O HIS 75 A O ILE 194 A O ILE 66 A N HIS 187 A N HIS 59 A N ARG 186 A N ARG 58 A O ILE 244 A O ILE 116 B N LEU 156 B N LEU 28 B O HIS 203 B O HIS 75 B O PHE 196 B O PHE 68 B N SER 185 B N SER 57 B N ASN 188 B N ASN 60 B O SER 242 B O SER 114 1 B HOH 301 F HOH 1 A CG LYS 136 A CG LYS 8 1 Y 1 A CD LYS 136 A CD LYS 8 1 Y 1 A CE LYS 136 A CE LYS 8 1 Y 1 A NZ LYS 136 A NZ LYS 8 1 Y 1 B CG LYS 136 B CG LYS 8 1 Y 1 B CD LYS 136 B CD LYS 8 1 Y 1 B CE LYS 136 B CE LYS 8 1 Y 1 B NZ LYS 136 B NZ LYS 8 1 Y 1 B CG LYS 167 B CG LYS 39 1 Y 1 B CD LYS 167 B CD LYS 39 1 Y 1 B CE LYS 167 B CE LYS 39 1 Y 1 B NZ LYS 167 B NZ LYS 39 1 Y 1 B CG LYS 214 B CG LYS 86 1 Y 1 B CD LYS 214 B CD LYS 86 1 Y 1 B CE LYS 214 B CE LYS 86 1 Y 1 B NZ LYS 214 B NZ LYS 86 1 Y 1 B CG LYS 228 B CG LYS 100 1 Y 1 B CD LYS 228 B CD LYS 100 1 Y 1 B CE LYS 228 B CE LYS 100 1 Y 1 B NZ LYS 228 B NZ LYS 100 1 Y 1 A GLY 129 A GLY 1 1 Y 1 A SER 130 A SER 2 1 Y 1 A LYS 131 A LYS 3 1 Y 1 A VAL 132 A VAL 4 1 Y 1 A PRO 259 A PRO 131 1 Y 1 A GLU 260 A GLU 132 1 Y 1 B GLY 129 B GLY 1 1 Y 1 B SER 130 B SER 2 1 Y 1 B LYS 131 B LYS 3 1 Y 1 B VAL 132 B VAL 4 1 Y 1 B GLU 133 B GLU 5 1 Y 1 B ASN 258 B ASN 130 1 Y 1 B PRO 259 B PRO 131 1 Y 1 B GLU 260 B GLU 132 1 Y 1 A A PHE ASN 257 258 149.86 1 B B THR PHE 217 218 148.93 1 7.83 1.20 119.70 127.53 Z Z Z C3' O3' P DA DA DA 9 9 10 Y 1 7.50 1.20 119.70 127.20 Z Z Z C3' O3' P DA DA DA 13 13 14 Y 1 9.73 1.20 119.70 129.43 Z Z Z C3' O3' P DA DA DG 14 14 15 Y 1 -8.38 1.20 119.70 111.32 Z Z Z C3' O3' P DC DC DC 16 16 17 Y 1 -8.10 1.20 119.70 111.60 Y Y Y C3' O3' P DA DA DG 2 2 3 Y 1 9.17 1.20 119.70 128.87 Y Y Y C3' O3' P DT DT DT 9 9 10 Y 1 A A CG CD2 HIS HIS 148 148 0.059 0.009 1.354 1.413 N 1 A PRO 135 -37.48 130.90 1 A SER 140 -1.63 -66.13 1 A ALA 149 -52.32 105.22 1 A PHE 151 -105.55 47.07 1 A THR 163 -165.28 -167.31 1 A SER 189 -160.08 98.49 1 A LEU 215 -89.57 31.22 1 A CYS 216 -168.08 98.03 1 A PHE 218 -137.72 -36.56 1 A LEU 221 -161.15 119.82 1 A ILE 244 -126.42 -80.60 1 A SER 247 -55.44 -86.80 1 B SER 140 -24.99 -57.72 1 B ARG 154 -38.27 120.48 1 B LYS 173 -75.82 -78.88 1 B ASN 191 46.66 18.05 1 B HIS 192 -112.28 -154.54 1 B SER 219 69.93 -117.26 1 B LEU 221 -174.48 104.98 1 B CYS 223 -169.79 119.10 1 B MET 232 -65.00 -72.33 1 B PRO 249 -34.16 127.40 1 B LYS 253 -83.48 -128.46 1 B GLU 254 -106.73 -67.40 1 B HIS 255 -2.91 -56.43 137.11 -0.22000 0.00000 0.00000 -0.13000 0.00000 0.35000 0.971 0.952 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.267 0.188 0.191 3.20 47.99 444 9305 8841 4.800 99.8 73.091 0.517 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.504 0.80 0.80 1.20 2NTC MAXIMUM LIKELIHOOD MASK 3.20 47.99 3 2967 0 937 2027 0.011 0.017 3132 1.767 1.737 4434 8.224 5.000 248 35.384 23.061 98 20.750 15.000 345 26.134 15.000 10 0.102 0.200 448 0.008 0.021 2062 0.2660 0.3020 3.28 29 563 20 97.69 3.200 50.000 4FGN 9304 1.000 1 100.0 3.20 3.31 1 100.0 data collection CBASS phasing PHASER refinement REFMAC 5.6.0117 data reduction HKL-2000 data scaling SCALEPACK Crystal structure of the SV40 large T-antigen origin bining domain bound to Site I DNA 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N A GLU 141 A GLU 13 HELX_P A LEU 146 A LEU 18 5 1 6 A THR 164 A THR 36 HELX_P A TYR 179 A TYR 51 1 2 16 A ARG 204 A ARG 76 HELX_P A LYS 214 A LYS 86 1 3 11 A LYS 228 A LYS 100 HELX_P A ARG 238 A ARG 110 1 4 11 A GLY 250 A GLY 122 HELX_P A GLU 254 A GLU 126 5 5 5 B PRO 139 B PRO 11 HELX_P B LEU 146 B LEU 18 5 6 8 B ALA 168 B ALA 40 HELX_P B SER 180 B SER 52 1 7 13 B ARG 204 B ARG 76 HELX_P B CYS 216 B CYS 88 1 8 13 B LYS 228 B LYS 100 HELX_P B ARG 238 B ARG 110 1 9 11 hydrog WATSON-CRICK Z DA 1 C N1 DA 1 1_555 Y DT 22 D N3 DT 22 1_555 hydrog WATSON-CRICK Z DA 1 C N6 DA 1 1_555 Y DT 22 D O4 DT 22 1_555 hydrog WATSON-CRICK Z DG 2 C N1 DG 2 1_555 Y DC 21 D N3 DC 21 1_555 hydrog WATSON-CRICK Z DG 2 C N2 DG 2 1_555 Y DC 21 D O2 DC 21 1_555 hydrog WATSON-CRICK Z DG 2 C O6 DG 2 1_555 Y DC 21 D N4 DC 21 1_555 hydrog WATSON-CRICK Z DG 3 C N1 DG 3 1_555 Y DC 20 D N3 DC 20 1_555 hydrog WATSON-CRICK Z DG 3 C N2 DG 3 1_555 Y DC 20 D O2 DC 20 1_555 hydrog WATSON-CRICK Z DG 3 C O6 DG 3 1_555 Y DC 20 D N4 DC 20 1_555 hydrog WATSON-CRICK Z DC 4 C N3 DC 4 1_555 Y DG 19 D N1 DG 19 1_555 hydrog WATSON-CRICK Z DC 4 C N4 DC 4 1_555 Y DG 19 D O6 DG 19 1_555 hydrog WATSON-CRICK Z DC 4 C O2 DC 4 1_555 Y DG 19 D N2 DG 19 1_555 hydrog WATSON-CRICK Z DC 5 C N3 DC 5 1_555 Y DG 18 D N1 DG 18 1_555 hydrog WATSON-CRICK Z DC 5 C N4 DC 5 1_555 Y DG 18 D O6 DG 18 1_555 hydrog WATSON-CRICK Z DC 5 C O2 DC 5 1_555 Y DG 18 D N2 DG 18 1_555 hydrog WATSON-CRICK Z DT 6 C N3 DT 6 1_555 Y DA 17 D N1 DA 17 1_555 hydrog WATSON-CRICK Z DT 6 C O4 DT 6 1_555 Y DA 17 D N6 DA 17 1_555 hydrog WATSON-CRICK Z DC 7 C N3 DC 7 1_555 Y DG 16 D N1 DG 16 1_555 hydrog WATSON-CRICK Z DC 7 C N4 DC 7 1_555 Y DG 16 D O6 DG 16 1_555 hydrog WATSON-CRICK Z DC 7 C O2 DC 7 1_555 Y DG 16 D N2 DG 16 1_555 hydrog WATSON-CRICK Z DC 8 C N3 DC 8 1_555 Y DG 15 D N1 DG 15 1_555 hydrog WATSON-CRICK Z DC 8 C N4 DC 8 1_555 Y DG 15 D O6 DG 15 1_555 hydrog WATSON-CRICK Z DC 8 C O2 DC 8 1_555 Y DG 15 D N2 DG 15 1_555 hydrog WATSON-CRICK Z DA 9 C N1 DA 9 1_555 Y DT 14 D N3 DT 14 1_555 hydrog WATSON-CRICK Z DA 9 C N6 DA 9 1_555 Y DT 14 D O4 DT 14 1_555 hydrog WATSON-CRICK Z DA 10 C N1 DA 10 1_555 Y DT 13 D N3 DT 13 1_555 hydrog WATSON-CRICK Z DA 10 C N6 DA 10 1_555 Y DT 13 D O4 DT 13 1_555 hydrog WATSON-CRICK Z DA 11 C N1 DA 11 1_555 Y DT 12 D N3 DT 12 1_555 hydrog WATSON-CRICK Z DA 11 C N6 DA 11 1_555 Y DT 12 D O4 DT 12 1_555 hydrog WATSON-CRICK Z DA 12 C N1 DA 12 1_555 Y DT 11 D N3 DT 11 1_555 hydrog WATSON-CRICK Z DA 12 C N6 DA 12 1_555 Y DT 11 D O4 DT 11 1_555 hydrog WATSON-CRICK Z DA 13 C N1 DA 13 1_555 Y DT 10 D N3 DT 10 1_555 hydrog WATSON-CRICK Z DA 13 C N6 DA 13 1_555 Y DT 10 D O4 DT 10 1_555 hydrog WATSON-CRICK Z DA 14 C N1 DA 14 1_555 Y DT 9 D N3 DT 9 1_555 hydrog WATSON-CRICK Z DA 14 C N6 DA 14 1_555 Y DT 9 D O4 DT 9 1_555 hydrog WATSON-CRICK Z DG 15 C N1 DG 15 1_555 Y DC 8 D N3 DC 8 1_555 hydrog WATSON-CRICK Z DG 15 C N2 DG 15 1_555 Y DC 8 D O2 DC 8 1_555 hydrog WATSON-CRICK Z DG 15 C O6 DG 15 1_555 Y DC 8 D N4 DC 8 1_555 hydrog WATSON-CRICK Z DC 16 C N3 DC 16 1_555 Y DG 7 D N1 DG 7 1_555 hydrog WATSON-CRICK Z DC 16 C N4 DC 16 1_555 Y DG 7 D O6 DG 7 1_555 hydrog WATSON-CRICK Z DC 16 C O2 DC 16 1_555 Y DG 7 D N2 DG 7 1_555 hydrog WATSON-CRICK Z DC 17 C N3 DC 17 1_555 Y DG 6 D N1 DG 6 1_555 hydrog WATSON-CRICK Z DC 17 C N4 DC 17 1_555 Y DG 6 D O6 DG 6 1_555 hydrog WATSON-CRICK Z DC 17 C O2 DC 17 1_555 Y DG 6 D N2 DG 6 1_555 hydrog WATSON-CRICK Z DT 18 C N3 DT 18 1_555 Y DA 5 D N1 DA 5 1_555 hydrog WATSON-CRICK Z DT 18 C O4 DT 18 1_555 Y DA 5 D N6 DA 5 1_555 hydrog WATSON-CRICK Z DC 19 C N3 DC 19 1_555 Y DG 4 D N1 DG 4 1_555 hydrog WATSON-CRICK Z DC 19 C N4 DC 19 1_555 Y DG 4 D O6 DG 4 1_555 hydrog WATSON-CRICK Z DC 19 C O2 DC 19 1_555 Y DG 4 D N2 DG 4 1_555 hydrog DC-DG PAIR Z DC 20 C O2 DC 20 1_555 Y DG 3 D N2 DG 3 1_555 hydrog WATSON-CRICK Z DT 21 C N3 DT 21 1_555 Y DA 2 D N1 DA 2 1_555 hydrog WATSON-CRICK Z DT 21 C O4 DT 21 1_555 Y DA 2 D N6 DA 2 1_555 hydrog DC-DG PAIR Z DC 22 C N4 DC 22 1_555 Y DG 1 D O6 DG 1 1_555 DNA BINDING PROTEIN/DNA origin binding domain, DNA BINDING PROTEIN-DNA complex A ASP 239 A ASP 111 1 A PRO 240 A PRO 112 12.73 B ASP 239 B ASP 111 1 B PRO 240 B PRO 112 0.19 LT_SV40 UNP 1 131 P03070 KVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAINN YAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPE 4FGN PDB 2 4FGN AGGCCTCCAAAAAAGCCTCCTCA 4FGN PDB 3 4FGN GAGGAGGCTTTTTTGGAGGCCTT 131 260 4FGN 131 260 P03070 A 1 3 132 131 260 4FGN 131 260 P03070 B 1 3 132 1 23 4FGN 1 23 4FGN Z 2 1 23 1 23 4FGN 1 23 4FGN Y 3 1 23 1 expression tag GLY 129 4FGN A P03070 UNP 1 1 expression tag SER 130 4FGN A P03070 UNP 2 2 expression tag GLY 129 4FGN B P03070 UNP 1 2 expression tag SER 130 4FGN B P03070 UNP 2 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 221 A LEU 93 A GLY 225 A GLY 97 A LEU 156 A LEU 28 A THR 163 A THR 35 A ASN 193 A ASN 65 A HIS 203 A HIS 75 A PHE 183 A PHE 55 A ASN 188 A ASN 60 A VAL 243 A VAL 115 A GLU 246 A GLU 118 B LEU 156 B LEU 28 B THR 163 B THR 35 B ASN 193 B ASN 65 B HIS 203 B HIS 75 B PHE 183 B PHE 55 B ASN 188 B ASN 60 B SER 242 B SER 114 B GLU 246 B GLU 118 20 C 2 2 21