0.012983
0.007496
0.000000
0.000000
0.014991
0.000000
0.000000
0.000000
0.014631
0.00000
0.00000
0.00000
Berndsen, C.E.
Wolberger, C.
Wiener, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
77.026
77.026
68.350
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H17 N O3 S
207.290
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
N-CYCLOHEXYLTAURINE; CHES
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
N
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
R
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
N
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
US
Nat.Chem.Biol.
1552-4450
9
154
156
10.1038/nchembio.1159
23292652
A conserved asparagine has a structural role in ubiquitin-conjugating enzymes.
2013
10.2210/pdb4fh1/pdb
pdb_00004fh1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
IMAGE PLATE
2012-03-11
MAR scanner 345 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.033
1.0
23-ID-B
APS
1.033
SYNCHROTRON
APS BEAMLINE 23-ID-B
17430.893
Ubiquitin-conjugating enzyme E2 13
6.3.2.19
N79A, C87S
1
man
polymer
207.290
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
1
syn
non-polymer
18.015
water
8
nat
water
Ubiquitin carrier protein 13, Ubiquitin-protein ligase 13
no
no
MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAI
DRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKKPE
MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAI
DRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKKPE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Baker's yeast
ATCC 204508 / S288c
sample
UBC13, YDR092W, YD6652.04
559292
Saccharomyces cerevisiae
562
Escherichia coli
BL21(DE3)pLysS
pET32a
1
3.36
63.37
VAPOR DIFFUSION, HANGING DROP
10.3
0.1 M CHES, pH 10.3, 20% PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-09
1
1
2013-05-22
1
2
2017-11-15
1
3
2023-09-13
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-06-05
REL
REL
NHE
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
HOH
water
1JBB
PDB
experimental model
NHE
1
2
NHE
NHE
201
A
HOH
2
3
HOH
HOH
301
A
HOH
3
3
HOH
HOH
302
A
HOH
4
3
HOH
HOH
303
A
HOH
5
3
HOH
HOH
304
A
HOH
6
3
HOH
HOH
305
A
HOH
7
3
HOH
HOH
306
A
HOH
10
3
HOH
HOH
307
A
HOH
12
3
HOH
HOH
308
A
n
1
1
A
n
2
2
A
SER
3
n
3
SER
3
A
LEU
4
n
4
LEU
4
A
PRO
5
n
5
PRO
5
A
LYS
6
n
6
LYS
6
A
ARG
7
n
7
ARG
7
A
ILE
8
n
8
ILE
8
A
ILE
9
n
9
ILE
9
A
LYS
10
n
10
LYS
10
A
GLU
11
n
11
GLU
11
A
THR
12
n
12
THR
12
A
GLU
13
n
13
GLU
13
A
LYS
14
n
14
LYS
14
A
LEU
15
n
15
LEU
15
A
VAL
16
n
16
VAL
16
A
SER
17
n
17
SER
17
A
ASP
18
n
18
ASP
18
A
PRO
19
n
19
PRO
19
A
VAL
20
n
20
VAL
20
A
PRO
21
n
21
PRO
21
A
GLY
22
n
22
GLY
22
A
ILE
23
n
23
ILE
23
A
THR
24
n
24
THR
24
A
ALA
25
n
25
ALA
25
A
GLU
26
n
26
GLU
26
A
PRO
27
n
27
PRO
27
A
HIS
28
n
28
HIS
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
ASN
31
n
31
ASN
31
A
LEU
32
n
32
LEU
32
A
ARG
33
n
33
ARG
33
A
TYR
34
n
34
TYR
34
A
PHE
35
n
35
PHE
35
A
GLN
36
n
36
GLN
36
A
VAL
37
n
37
VAL
37
A
THR
38
n
38
THR
38
A
ILE
39
n
39
ILE
39
A
GLU
40
n
40
GLU
40
A
GLY
41
n
41
GLY
41
A
PRO
42
n
42
PRO
42
A
GLU
43
n
43
GLU
43
A
GLN
44
n
44
GLN
44
A
SER
45
n
45
SER
45
A
PRO
46
n
46
PRO
46
A
TYR
47
n
47
TYR
47
A
GLU
48
n
48
GLU
48
A
ASP
49
n
49
ASP
49
A
GLY
50
n
50
GLY
50
A
ILE
51
n
51
ILE
51
A
PHE
52
n
52
PHE
52
A
GLU
53
n
53
GLU
53
A
LEU
54
n
54
LEU
54
A
GLU
55
n
55
GLU
55
A
LEU
56
n
56
LEU
56
A
TYR
57
n
57
TYR
57
A
LEU
58
n
58
LEU
58
A
PRO
59
n
59
PRO
59
A
ASP
60
n
60
ASP
60
A
ASP
61
n
61
ASP
61
A
TYR
62
n
62
TYR
62
A
PRO
63
n
63
PRO
63
A
MET
64
n
64
MET
64
A
GLU
65
n
65
GLU
65
A
ALA
66
n
66
ALA
66
A
PRO
67
n
67
PRO
67
A
LYS
68
n
68
LYS
68
A
VAL
69
n
69
VAL
69
A
ARG
70
n
70
ARG
70
A
PHE
71
n
71
PHE
71
A
LEU
72
n
72
LEU
72
A
THR
73
n
73
THR
73
A
LYS
74
n
74
LYS
74
A
ILE
75
n
75
ILE
75
A
TYR
76
n
76
TYR
76
A
HIS
77
n
77
HIS
77
A
PRO
78
n
78
PRO
78
A
ALA
79
n
79
ALA
79
A
ILE
80
n
80
ILE
80
A
ASP
81
n
81
ASP
81
A
ARG
82
n
82
ARG
82
A
LEU
83
n
83
LEU
83
A
GLY
84
n
84
GLY
84
A
ARG
85
n
85
ARG
85
A
ILE
86
n
86
ILE
86
A
SER
87
n
87
SER
87
A
LEU
88
n
88
LEU
88
A
ASP
89
n
89
ASP
89
A
VAL
90
n
90
VAL
90
A
LEU
91
n
91
LEU
91
A
LYS
92
n
92
LYS
92
A
THR
93
n
93
THR
93
A
ASN
94
n
94
ASN
94
A
TRP
95
n
95
TRP
95
A
SER
96
n
96
SER
96
A
PRO
97
n
97
PRO
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
GLN
100
n
100
GLN
100
A
ILE
101
n
101
ILE
101
A
ARG
102
n
102
ARG
102
A
THR
103
n
103
THR
103
A
VAL
104
n
104
VAL
104
A
LEU
105
n
105
LEU
105
A
LEU
106
n
106
LEU
106
A
SER
107
n
107
SER
107
A
ILE
108
n
108
ILE
108
A
GLN
109
n
109
GLN
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
LEU
112
n
112
LEU
112
A
ALA
113
n
113
ALA
113
A
SER
114
n
114
SER
114
A
PRO
115
n
115
PRO
115
A
ASN
116
n
116
ASN
116
A
PRO
117
n
117
PRO
117
A
ASN
118
n
118
ASN
118
A
n
119
119
A
n
120
120
A
n
121
121
A
n
122
122
A
ASN
123
n
123
ASN
123
A
ASP
124
n
124
ASP
124
A
VAL
125
n
125
VAL
125
A
ALA
126
n
126
ALA
126
A
GLU
127
n
127
GLU
127
A
ASP
128
n
128
ASP
128
A
TRP
129
n
129
TRP
129
A
ILE
130
n
130
ILE
130
A
LYS
131
n
131
LYS
131
A
ASN
132
n
132
ASN
132
A
GLU
133
n
133
GLU
133
A
GLN
134
n
134
GLN
134
A
GLY
135
n
135
GLY
135
A
ALA
136
n
136
ALA
136
A
LYS
137
n
137
LYS
137
A
ALA
138
n
138
ALA
138
A
LYS
139
n
139
LYS
139
A
ALA
140
n
140
ALA
140
A
ARG
141
n
141
ARG
141
A
GLU
142
n
142
GLU
142
A
TRP
143
n
143
TRP
143
A
THR
144
n
144
THR
144
A
LYS
145
n
145
LYS
145
A
LEU
146
n
146
LEU
146
A
TYR
147
n
147
TYR
147
A
ALA
148
n
148
ALA
148
A
LYS
149
n
149
LYS
149
A
LYS
150
n
150
LYS
150
A
LYS
151
n
151
LYS
151
A
n
152
152
A
n
153
153
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
26
A
N
GLU
26
A
O
GLN
36
A
O
GLN
36
A
N
PHE
35
A
N
PHE
35
A
O
LEU
56
A
O
LEU
56
A
N
TYR
57
A
N
TYR
57
A
O
LYS
68
A
O
LYS
68
1
A
CG
ASP
18
A
CG
ASP
18
1
Y
1
A
OD1
ASP
18
A
OD1
ASP
18
1
Y
1
A
OD2
ASP
18
A
OD2
ASP
18
1
Y
1
A
CG
ASP
30
A
CG
ASP
30
1
Y
1
A
OD1
ASP
30
A
OD1
ASP
30
1
Y
1
A
OD2
ASP
30
A
OD2
ASP
30
1
Y
1
A
CG
GLU
43
A
CG
GLU
43
1
Y
1
A
CD
GLU
43
A
CD
GLU
43
1
Y
1
A
OE1
GLU
43
A
OE1
GLU
43
1
Y
1
A
OE2
GLU
43
A
OE2
GLU
43
1
Y
1
A
CG
GLN
44
A
CG
GLN
44
1
Y
1
A
CD
GLN
44
A
CD
GLN
44
1
Y
1
A
OE1
GLN
44
A
OE1
GLN
44
1
Y
1
A
NE2
GLN
44
A
NE2
GLN
44
1
Y
1
A
CG
GLU
48
A
CG
GLU
48
1
Y
1
A
CD
GLU
48
A
CD
GLU
48
1
Y
1
A
OE1
GLU
48
A
OE1
GLU
48
1
Y
1
A
OE2
GLU
48
A
OE2
GLU
48
1
Y
1
A
CG
ASP
49
A
CG
ASP
49
1
Y
1
A
OD1
ASP
49
A
OD1
ASP
49
1
Y
1
A
OD2
ASP
49
A
OD2
ASP
49
1
Y
1
A
CG
ARG
82
A
CG
ARG
82
1
Y
1
A
CD
ARG
82
A
CD
ARG
82
1
Y
1
A
NE
ARG
82
A
NE
ARG
82
1
Y
1
A
CZ
ARG
82
A
CZ
ARG
82
1
Y
1
A
NH1
ARG
82
A
NH1
ARG
82
1
Y
1
A
NH2
ARG
82
A
NH2
ARG
82
1
Y
1
A
CG
ARG
85
A
CG
ARG
85
1
Y
1
A
CD
ARG
85
A
CD
ARG
85
1
Y
1
A
NE
ARG
85
A
NE
ARG
85
1
Y
1
A
CZ
ARG
85
A
CZ
ARG
85
1
Y
1
A
NH1
ARG
85
A
NH1
ARG
85
1
Y
1
A
NH2
ARG
85
A
NH2
ARG
85
1
Y
1
A
CG
LYS
92
A
CG
LYS
92
1
Y
1
A
CD
LYS
92
A
CD
LYS
92
1
Y
1
A
CE
LYS
92
A
CE
LYS
92
1
Y
1
A
NZ
LYS
92
A
NZ
LYS
92
1
Y
1
A
CG
ASN
116
A
CG
ASN
116
1
Y
1
A
OD1
ASN
116
A
OD1
ASN
116
1
Y
1
A
ND2
ASN
116
A
ND2
ASN
116
1
Y
1
A
CG
ASN
118
A
CG
ASN
118
1
Y
1
A
OD1
ASN
118
A
OD1
ASN
118
1
Y
1
A
ND2
ASN
118
A
ND2
ASN
118
1
Y
1
A
CG
LYS
131
A
CG
LYS
131
1
Y
1
A
CD
LYS
131
A
CD
LYS
131
1
Y
1
A
CE
LYS
131
A
CE
LYS
131
1
Y
1
A
NZ
LYS
131
A
NZ
LYS
131
1
Y
1
A
CG
GLU
142
A
CG
GLU
142
1
Y
1
A
CD
GLU
142
A
CD
GLU
142
1
Y
1
A
OE1
GLU
142
A
OE1
GLU
142
1
Y
1
A
OE2
GLU
142
A
OE2
GLU
142
1
Y
1
A
CG
LYS
145
A
CG
LYS
145
1
Y
1
A
CD
LYS
145
A
CD
LYS
145
1
Y
1
A
CE
LYS
145
A
CE
LYS
145
1
Y
1
A
NZ
LYS
145
A
NZ
LYS
145
1
Y
1
A
CG
LYS
149
A
CG
LYS
149
1
Y
1
A
CD
LYS
149
A
CD
LYS
149
1
Y
1
A
CE
LYS
149
A
CE
LYS
149
1
Y
1
A
NZ
LYS
149
A
NZ
LYS
149
1
Y
1
A
CG
LYS
151
A
CG
LYS
151
1
Y
1
A
CD
LYS
151
A
CD
LYS
151
1
Y
1
A
CE
LYS
151
A
CE
LYS
151
1
Y
1
A
NZ
LYS
151
A
NZ
LYS
151
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
ASP
119
A
ASP
119
1
Y
1
A
PRO
120
A
PRO
120
1
Y
1
A
LEU
121
A
LEU
121
1
Y
1
A
ALA
122
A
ALA
122
1
Y
1
A
PRO
152
A
PRO
152
1
Y
1
A
GLU
153
A
GLU
153
1
Y
1
A
LYS
92
-109.96
-94.94
1
A
ASN
132
67.06
71.51
56.209
1.43
0.72
-0.00
1.43
-0.00
-2.15
0.942
0.926
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.24553
0.21866
0.21990
2.61
33.35
345
7410
7065
4.7
99.36
9.487
0.202
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.387
0.261
0.80
0.80
1.20
1JBB
MAXIMUM LIKELIHOOD
MASK
2.61
33.35
8
1130
13
0
1109
0.007
0.020
1150
1.045
1.999
1574
5.141
5.000
143
35.312
24.419
43
18.075
15.000
176
19.158
15.000
5
0.062
0.200
183
0.005
0.022
856
0.369
0.328
2.674
21
475
20
99.60
2.65
66.71
4FH1
7065
2.0
1.0
0.139
1
12.3
4.9
99.8
2.65
2.7
1
100
data collection
MAR345
phasing
PHASER
refinement
REFMAC
5.6.0117
data reduction
HKL-2000
data scaling
HKL-2000
S. cerevisiae Ubc13-N79A
1
N
N
2
N
N
3
N
N
A
PRO
5
A
PRO
5
HELX_P
A
ASP
18
A
ASP
18
1
1
14
A
LEU
88
A
LEU
88
HELX_P
A
LYS
92
A
LYS
92
5
2
5
A
GLN
100
A
GLN
100
HELX_P
A
SER
114
A
SER
114
1
3
15
A
ASP
124
A
ASP
124
HELX_P
A
TRP
129
A
TRP
129
1
4
6
A
ASN
132
A
ASN
132
HELX_P
A
ALA
148
A
ALA
148
1
5
17
LIGASE
Ubiquitin Conjugating Enzyme, LIGASE
A
TYR
62
A
TYR
62
1
A
PRO
63
A
PRO
63
10.15
UBC13_YEAST
UNP
1
1
P52490
MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI
DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKKPE
1
153
4FH1
1
152
P52490
A
1
1
152
1
ASN
engineered mutation
ALA
79
4FH1
A
P52490
UNP
79
79
1
CYS
engineered mutation
SER
87
4FH1
A
P52490
UNP
87
87
4
anti-parallel
anti-parallel
anti-parallel
A
ILE
23
A
ILE
23
A
HIS
28
A
HIS
28
A
ASN
31
A
ASN
31
A
GLU
40
A
GLU
40
A
ILE
51
A
ILE
51
A
TYR
57
A
TYR
57
A
LYS
68
A
LYS
68
A
PHE
71
A
PHE
71
BINDING SITE FOR RESIDUE NHE A 201
A
NHE
201
Software
2
A
LYS
14
A
LYS
14
2
3_454
A
GLN
100
A
GLN
100
2
3_454
152
P 31 2 1