0.018447
0.000000
0.000000
0.000000
0.015850
0.000000
0.000000
0.000000
0.006979
0.00000
0.00000
0.00000
Benjdia, A.
Heil, K.
Barends, T.R.M.
Carell, T.
Schlichting, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
54.210
63.090
143.290
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C15 H23 N6 O5 Se 1
446.340
[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium
Se-ADENOSYLSELENOMETHIONINE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
Fe4 S4
351.640
IRON/SULFUR CLUSTER
non-polymer
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
Y
98
N
C
Y
99
N
N
Y
100
N
C
N
101
R
C
N
102
R
C
N
103
S
C
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
O
N
109
S
C
N
110
N
N
N
111
N
C
N
112
N
C
N
113
S
SE
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
Y
118
N
N
Y
119
N
C
Y
120
N
N
Y
121
N
C
Y
122
N
N
Y
123
N
C
N
124
N
N
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
Y
202
N
C
Y
203
N
N
Y
204
N
C
Y
205
N
C
Y
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
S
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
N
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
S
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
FE
N
365
N
FE
N
366
N
FE
N
367
N
FE
N
368
N
S
N
369
N
S
N
370
N
S
N
371
N
S
N
372
N
S
N
373
N
O
N
374
N
O
N
375
N
O
N
376
N
O
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
R
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
N
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
N
450
N
C
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
doub
Y
93
N
sing
N
94
N
sing
Y
95
N
doub
Y
96
N
sing
Y
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
Y
135
N
sing
Y
136
N
doub
N
137
N
sing
Y
138
N
sing
Y
139
N
doub
Y
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
Y
201
N
sing
Y
202
N
doub
Y
203
N
doub
N
204
N
sing
Y
205
N
sing
N
206
N
sing
Y
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
Y
309
N
doub
Y
310
N
sing
Y
311
N
sing
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
Y
422
N
doub
Y
423
N
sing
Y
424
N
sing
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
9308
9318
10.1093/nar/gks603
22761404
Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme.
2012
10.2210/pdb4fhg/pdb
pdb_00004fhg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2011-03-20
PSI PILATUS 6M
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9786
1.0
X10SA
SLS
0.9786
SYNCHROTRON
SLS BEAMLINE X10SA
42959.844
Spore photoproduct lyase
C140S
1
man
polymer
351.640
IRON/SULFUR CLUSTER
1
syn
non-polymer
446.340
[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium
1
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
176
nat
water
no
no
MKHHHHHHPMSDYDIPTTENLYFQGAMGKPFVPKLVYFEPEALSYPLGKELYEKFTQMGIKIRETTSHNQVRGIPGETEL
ARYRNAKSTLVVGVRRTLKFDSSKPSAEYAIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEI
TRFEAASTSDIVGIDHLTHSLKKAIEFIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINSRYVINHFEPGTSSFD
GRLAAARKVAGAGYKLGFVVAPIYRHEGWERGYFELFQELARQLEGMDLSDLTFELIQHRFTKPAKRVIEQRYPKTRLDL
DETKRKYKWGRYGIGKYVYRDEEAKELEDTMRRYIEQFFPGAYVQYFT
MKHHHHHHPMSDYDIPTTENLYFQGAMGKPFVPKLVYFEPEALSYPLGKELYEKFTQMGIKIRETTSHNQVRGIPGETEL
ARYRNAKSTLVVGVRRTLKFDSSKPSAEYAIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEI
TRFEAASTSDIVGIDHLTHSLKKAIEFIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINSRYVINHFEPGTSSFD
GRLAAARKVAGAGYKLGFVVAPIYRHEGWERGYFELFQELARQLEGMDLSDLTFELIQHRFTKPAKRVIEQRYPKTRLDL
DETKRKYKWGRYGIGKYVYRDEEAKELEDTMRRYIEQFFPGAYVQYFT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NG80-2
sample
GTNG_2348
420246
Geobacillus thermodenitrificans
562
Escherichia coli
BL21(DE-3)
plasmid
modified pETM11
1
2.85
56.87
VAPOR DIFFUSION, HANGING DROP
9.0
200 mM Li-sulfate, 100 mM Tris/HCl, 19-27% PEG800, 70 mM HEGA-8, anaerobically , pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-07-18
1
1
2012-10-31
1
2
2024-02-28
1
3
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-06-06
REL
REL
SF4
IRON/SULFUR CLUSTER
EEM
[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium
SO4
SULFATE ION
EDO
1,2-ETHANEDIOL
HOH
water
4FHC
wt structure without substrate
PDB
experimental model
FS4
1
2
SF4
SF4
401
A
SA2
1
3
EEM
EEM
402
A
SO4
1
4
SO4
SO4
403
A
SO4
2
4
SO4
SO4
404
A
SO4
3
4
SO4
SO4
405
A
SO4
4
4
SO4
SO4
406
A
EDO
5
5
EDO
EDO
407
A
HOH
2
6
HOH
HOH
501
A
HOH
6
6
HOH
HOH
502
A
HOH
7
6
HOH
HOH
503
A
HOH
9
6
HOH
HOH
504
A
HOH
11
6
HOH
HOH
505
A
HOH
12
6
HOH
HOH
506
A
HOH
13
6
HOH
HOH
507
A
HOH
17
6
HOH
HOH
508
A
HOH
18
6
HOH
HOH
509
A
HOH
22
6
HOH
HOH
510
A
HOH
24
6
HOH
HOH
511
A
HOH
25
6
HOH
HOH
512
A
HOH
26
6
HOH
HOH
513
A
HOH
27
6
HOH
HOH
514
A
HOH
29
6
HOH
HOH
515
A
HOH
30
6
HOH
HOH
516
A
HOH
32
6
HOH
HOH
517
A
HOH
33
6
HOH
HOH
518
A
HOH
35
6
HOH
HOH
519
A
HOH
36
6
HOH
HOH
520
A
HOH
40
6
HOH
HOH
521
A
HOH
41
6
HOH
HOH
522
A
HOH
42
6
HOH
HOH
523
A
HOH
43
6
HOH
HOH
524
A
HOH
45
6
HOH
HOH
525
A
HOH
48
6
HOH
HOH
526
A
HOH
49
6
HOH
HOH
527
A
HOH
50
6
HOH
HOH
528
A
HOH
51
6
HOH
HOH
529
A
HOH
52
6
HOH
HOH
530
A
HOH
54
6
HOH
HOH
531
A
HOH
55
6
HOH
HOH
532
A
HOH
58
6
HOH
HOH
533
A
HOH
60
6
HOH
HOH
534
A
HOH
62
6
HOH
HOH
535
A
HOH
63
6
HOH
HOH
536
A
HOH
64
6
HOH
HOH
537
A
HOH
65
6
HOH
HOH
538
A
HOH
67
6
HOH
HOH
539
A
HOH
70
6
HOH
HOH
540
A
HOH
74
6
HOH
HOH
541
A
HOH
75
6
HOH
HOH
542
A
HOH
77
6
HOH
HOH
543
A
HOH
78
6
HOH
HOH
544
A
HOH
82
6
HOH
HOH
545
A
HOH
84
6
HOH
HOH
546
A
HOH
89
6
HOH
HOH
547
A
HOH
90
6
HOH
HOH
548
A
HOH
91
6
HOH
HOH
549
A
HOH
93
6
HOH
HOH
550
A
HOH
95
6
HOH
HOH
551
A
HOH
98
6
HOH
HOH
552
A
HOH
99
6
HOH
HOH
553
A
HOH
103
6
HOH
HOH
554
A
HOH
105
6
HOH
HOH
555
A
HOH
108
6
HOH
HOH
556
A
HOH
109
6
HOH
HOH
557
A
HOH
110
6
HOH
HOH
558
A
HOH
111
6
HOH
HOH
559
A
HOH
113
6
HOH
HOH
560
A
HOH
116
6
HOH
HOH
561
A
HOH
117
6
HOH
HOH
562
A
HOH
118
6
HOH
HOH
563
A
HOH
125
6
HOH
HOH
564
A
HOH
126
6
HOH
HOH
565
A
HOH
128
6
HOH
HOH
566
A
HOH
132
6
HOH
HOH
567
A
HOH
133
6
HOH
HOH
568
A
HOH
136
6
HOH
HOH
569
A
HOH
137
6
HOH
HOH
570
A
HOH
144
6
HOH
HOH
571
A
HOH
146
6
HOH
HOH
572
A
HOH
147
6
HOH
HOH
573
A
HOH
148
6
HOH
HOH
574
A
HOH
150
6
HOH
HOH
575
A
HOH
151
6
HOH
HOH
576
A
HOH
152
6
HOH
HOH
577
A
HOH
153
6
HOH
HOH
578
A
HOH
154
6
HOH
HOH
579
A
HOH
155
6
HOH
HOH
580
A
HOH
156
6
HOH
HOH
581
A
HOH
157
6
HOH
HOH
582
A
HOH
158
6
HOH
HOH
583
A
HOH
161
6
HOH
HOH
584
A
HOH
165
6
HOH
HOH
585
A
HOH
166
6
HOH
HOH
586
A
HOH
168
6
HOH
HOH
587
A
HOH
169
6
HOH
HOH
588
A
HOH
170
6
HOH
HOH
589
A
HOH
171
6
HOH
HOH
590
A
HOH
172
6
HOH
HOH
591
A
HOH
173
6
HOH
HOH
592
A
HOH
175
6
HOH
HOH
593
A
HOH
176
6
HOH
HOH
594
A
HOH
177
6
HOH
HOH
595
A
HOH
179
6
HOH
HOH
596
A
HOH
180
6
HOH
HOH
597
A
HOH
181
6
HOH
HOH
598
A
HOH
182
6
HOH
HOH
599
A
HOH
183
6
HOH
HOH
600
A
HOH
184
6
HOH
HOH
601
A
HOH
187
6
HOH
HOH
602
A
HOH
189
6
HOH
HOH
603
A
HOH
192
6
HOH
HOH
604
A
HOH
193
6
HOH
HOH
605
A
HOH
194
6
HOH
HOH
606
A
HOH
195
6
HOH
HOH
607
A
HOH
196
6
HOH
HOH
608
A
HOH
197
6
HOH
HOH
609
A
HOH
199
6
HOH
HOH
610
A
HOH
200
6
HOH
HOH
611
A
HOH
202
6
HOH
HOH
612
A
HOH
203
6
HOH
HOH
613
A
HOH
204
6
HOH
HOH
614
A
HOH
205
6
HOH
HOH
615
A
HOH
208
6
HOH
HOH
616
A
HOH
209
6
HOH
HOH
617
A
HOH
210
6
HOH
HOH
618
A
HOH
212
6
HOH
HOH
619
A
HOH
213
6
HOH
HOH
620
A
HOH
214
6
HOH
HOH
621
A
HOH
215
6
HOH
HOH
622
A
HOH
216
6
HOH
HOH
623
A
HOH
217
6
HOH
HOH
624
A
HOH
218
6
HOH
HOH
625
A
HOH
219
6
HOH
HOH
626
A
HOH
220
6
HOH
HOH
627
A
HOH
221
6
HOH
HOH
628
A
HOH
224
6
HOH
HOH
629
A
HOH
225
6
HOH
HOH
630
A
HOH
226
6
HOH
HOH
631
A
HOH
227
6
HOH
HOH
632
A
HOH
228
6
HOH
HOH
633
A
HOH
229
6
HOH
HOH
634
A
HOH
230
6
HOH
HOH
635
A
HOH
231
6
HOH
HOH
636
A
HOH
232
6
HOH
HOH
637
A
HOH
233
6
HOH
HOH
638
A
HOH
234
6
HOH
HOH
639
A
HOH
235
6
HOH
HOH
640
A
HOH
239
6
HOH
HOH
641
A
HOH
240
6
HOH
HOH
642
A
HOH
242
6
HOH
HOH
643
A
HOH
246
6
HOH
HOH
644
A
HOH
248
6
HOH
HOH
645
A
HOH
249
6
HOH
HOH
646
A
HOH
251
6
HOH
HOH
647
A
HOH
255
6
HOH
HOH
648
A
HOH
256
6
HOH
HOH
649
A
HOH
258
6
HOH
HOH
650
A
HOH
261
6
HOH
HOH
651
A
HOH
262
6
HOH
HOH
652
A
HOH
264
6
HOH
HOH
653
A
HOH
265
6
HOH
HOH
654
A
HOH
267
6
HOH
HOH
655
A
HOH
271
6
HOH
HOH
656
A
HOH
272
6
HOH
HOH
657
A
HOH
275
6
HOH
HOH
658
A
HOH
276
6
HOH
HOH
659
A
HOH
277
6
HOH
HOH
660
A
HOH
278
6
HOH
HOH
661
A
HOH
279
6
HOH
HOH
662
A
HOH
280
6
HOH
HOH
663
A
HOH
281
6
HOH
HOH
664
A
HOH
282
6
HOH
HOH
665
A
HOH
283
6
HOH
HOH
666
A
HOH
284
6
HOH
HOH
667
A
HOH
285
6
HOH
HOH
668
A
HOH
286
6
HOH
HOH
669
A
HOH
287
6
HOH
HOH
670
A
HOH
288
6
HOH
HOH
671
A
HOH
289
6
HOH
HOH
672
A
HOH
290
6
HOH
HOH
673
A
HOH
291
6
HOH
HOH
674
A
HOH
292
6
HOH
HOH
675
A
HOH
293
6
HOH
HOH
676
A
n
1
-26
A
n
2
-25
A
n
3
-24
A
n
4
-23
A
n
5
-22
A
n
6
-21
A
n
7
-20
A
n
8
-19
A
n
9
-18
A
n
10
-17
A
n
11
-16
A
n
12
-15
A
n
13
-14
A
n
14
-13
A
n
15
-12
A
n
16
-11
A
n
17
-10
A
n
18
-9
A
n
19
-8
A
n
20
-7
A
n
21
-6
A
n
22
-5
A
n
23
-4
A
n
24
-3
A
n
25
-2
A
n
26
-1
A
n
27
0
A
n
28
1
A
LYS
2
n
29
LYS
2
A
PRO
3
n
30
PRO
3
A
PHE
4
n
31
PHE
4
A
VAL
5
n
32
VAL
5
A
PRO
6
n
33
PRO
6
A
LYS
7
n
34
LYS
7
A
LEU
8
n
35
LEU
8
A
VAL
9
n
36
VAL
9
A
TYR
10
n
37
TYR
10
A
PHE
11
n
38
PHE
11
A
GLU
12
n
39
GLU
12
A
PRO
13
n
40
PRO
13
A
GLU
14
n
41
GLU
14
A
ALA
15
n
42
ALA
15
A
LEU
16
n
43
LEU
16
A
SER
17
n
44
SER
17
A
TYR
18
n
45
TYR
18
A
PRO
19
n
46
PRO
19
A
LEU
20
n
47
LEU
20
A
GLY
21
n
48
GLY
21
A
LYS
22
n
49
LYS
22
A
GLU
23
n
50
GLU
23
A
LEU
24
n
51
LEU
24
A
TYR
25
n
52
TYR
25
A
GLU
26
n
53
GLU
26
A
LYS
27
n
54
LYS
27
A
PHE
28
n
55
PHE
28
A
THR
29
n
56
THR
29
A
GLN
30
n
57
GLN
30
A
MET
31
n
58
MET
31
A
GLY
32
n
59
GLY
32
A
ILE
33
n
60
ILE
33
A
LYS
34
n
61
LYS
34
A
ILE
35
n
62
ILE
35
A
ARG
36
n
63
ARG
36
A
GLU
37
n
64
GLU
37
A
THR
38
n
65
THR
38
A
THR
39
n
66
THR
39
A
SER
40
n
67
SER
40
A
HIS
41
n
68
HIS
41
A
ASN
42
n
69
ASN
42
A
GLN
43
n
70
GLN
43
A
VAL
44
n
71
VAL
44
A
ARG
45
n
72
ARG
45
A
GLY
46
n
73
GLY
46
A
ILE
47
n
74
ILE
47
A
PRO
48
n
75
PRO
48
A
GLY
49
n
76
GLY
49
A
GLU
50
n
77
GLU
50
A
THR
51
n
78
THR
51
A
GLU
52
n
79
GLU
52
A
LEU
53
n
80
LEU
53
A
ALA
54
n
81
ALA
54
A
ARG
55
n
82
ARG
55
A
TYR
56
n
83
TYR
56
A
ARG
57
n
84
ARG
57
A
ASN
58
n
85
ASN
58
A
ALA
59
n
86
ALA
59
A
LYS
60
n
87
LYS
60
A
SER
61
n
88
SER
61
A
THR
62
n
89
THR
62
A
LEU
63
n
90
LEU
63
A
VAL
64
n
91
VAL
64
A
VAL
65
n
92
VAL
65
A
GLY
66
n
93
GLY
66
A
VAL
67
n
94
VAL
67
A
ARG
68
n
95
ARG
68
A
ARG
69
n
96
ARG
69
A
THR
70
n
97
THR
70
A
LEU
71
n
98
LEU
71
A
LYS
72
n
99
LYS
72
A
PHE
73
n
100
PHE
73
A
ASP
74
n
101
ASP
74
A
SER
75
n
102
SER
75
A
SER
76
n
103
SER
76
A
LYS
77
n
104
LYS
77
A
PRO
78
n
105
PRO
78
A
SER
79
n
106
SER
79
A
ALA
80
n
107
ALA
80
A
GLU
81
n
108
GLU
81
A
TYR
82
n
109
TYR
82
A
ALA
83
n
110
ALA
83
A
ILE
84
n
111
ILE
84
A
PRO
85
n
112
PRO
85
A
LEU
86
n
113
LEU
86
A
ALA
87
n
114
ALA
87
A
THR
88
n
115
THR
88
A
GLY
89
n
116
GLY
89
A
CYS
90
n
117
CYS
90
A
MET
91
n
118
MET
91
A
GLY
92
n
119
GLY
92
A
HIS
93
n
120
HIS
93
A
CYS
94
n
121
CYS
94
A
HIS
95
n
122
HIS
95
A
TYR
96
n
123
TYR
96
A
CYS
97
n
124
CYS
97
A
TYR
98
n
125
TYR
98
A
LEU
99
n
126
LEU
99
A
GLN
100
n
127
GLN
100
A
THR
101
n
128
THR
101
A
THR
102
n
129
THR
102
A
LEU
103
n
130
LEU
103
A
GLY
104
n
131
GLY
104
A
SER
105
n
132
SER
105
A
LYS
106
n
133
LYS
106
A
PRO
107
n
134
PRO
107
A
TYR
108
n
135
TYR
108
A
ILE
109
n
136
ILE
109
A
ARG
110
n
137
ARG
110
A
VAL
111
n
138
VAL
111
A
TYR
112
n
139
TYR
112
A
VAL
113
n
140
VAL
113
A
ASN
114
n
141
ASN
114
A
LEU
115
n
142
LEU
115
A
ASP
116
n
143
ASP
116
A
ASP
117
n
144
ASP
117
A
ILE
118
n
145
ILE
118
A
PHE
119
n
146
PHE
119
A
ALA
120
n
147
ALA
120
A
GLN
121
n
148
GLN
121
A
ALA
122
n
149
ALA
122
A
GLN
123
n
150
GLN
123
A
LYS
124
n
151
LYS
124
A
TYR
125
n
152
TYR
125
A
ILE
126
n
153
ILE
126
A
ASN
127
n
154
ASN
127
A
GLU
128
n
155
GLU
128
A
ARG
129
n
156
ARG
129
A
ALA
130
n
157
ALA
130
A
PRO
131
n
158
PRO
131
A
GLU
132
n
159
GLU
132
A
ILE
133
n
160
ILE
133
A
THR
134
n
161
THR
134
A
ARG
135
n
162
ARG
135
A
PHE
136
n
163
PHE
136
A
GLU
137
n
164
GLU
137
A
ALA
138
n
165
ALA
138
A
ALA
139
n
166
ALA
139
A
SER
140
n
167
SER
140
A
THR
141
n
168
THR
141
A
SER
142
n
169
SER
142
A
ASP
143
n
170
ASP
143
A
ILE
144
n
171
ILE
144
A
VAL
145
n
172
VAL
145
A
GLY
146
n
173
GLY
146
A
ILE
147
n
174
ILE
147
A
ASP
148
n
175
ASP
148
A
HIS
149
n
176
HIS
149
A
LEU
150
n
177
LEU
150
A
THR
151
n
178
THR
151
A
HIS
152
n
179
HIS
152
A
SER
153
n
180
SER
153
A
LEU
154
n
181
LEU
154
A
LYS
155
n
182
LYS
155
A
LYS
156
n
183
LYS
156
A
ALA
157
n
184
ALA
157
A
ILE
158
n
185
ILE
158
A
GLU
159
n
186
GLU
159
A
PHE
160
n
187
PHE
160
A
ILE
161
n
188
ILE
161
A
GLY
162
n
189
GLY
162
A
ALA
163
n
190
ALA
163
A
THR
164
n
191
THR
164
A
ASP
165
n
192
ASP
165
A
TYR
166
n
193
TYR
166
A
GLY
167
n
194
GLY
167
A
ARG
168
n
195
ARG
168
A
LEU
169
n
196
LEU
169
A
ARG
170
n
197
ARG
170
A
PHE
171
n
198
PHE
171
A
VAL
172
n
199
VAL
172
A
THR
173
n
200
THR
173
A
LYS
174
n
201
LYS
174
A
TYR
175
n
202
TYR
175
A
GLU
176
n
203
GLU
176
A
HIS
177
n
204
HIS
177
A
VAL
178
n
205
VAL
178
A
ASP
179
n
206
ASP
179
A
HIS
180
n
207
HIS
180
A
LEU
181
n
208
LEU
181
A
LEU
182
n
209
LEU
182
A
ASP
183
n
210
ASP
183
A
ALA
184
n
211
ALA
184
A
ARG
185
n
212
ARG
185
A
HIS
186
n
213
HIS
186
A
ASN
187
n
214
ASN
187
A
GLY
188
n
215
GLY
188
A
LYS
189
n
216
LYS
189
A
THR
190
n
217
THR
190
A
ARG
191
n
218
ARG
191
A
PHE
192
n
219
PHE
192
A
ARG
193
n
220
ARG
193
A
PHE
194
n
221
PHE
194
A
SER
195
n
222
SER
195
A
ILE
196
n
223
ILE
196
A
ASN
197
n
224
ASN
197
A
SER
198
n
225
SER
198
A
ARG
199
n
226
ARG
199
A
TYR
200
n
227
TYR
200
A
VAL
201
n
228
VAL
201
A
ILE
202
n
229
ILE
202
A
ASN
203
n
230
ASN
203
A
HIS
204
n
231
HIS
204
A
PHE
205
n
232
PHE
205
A
GLU
206
n
233
GLU
206
A
PRO
207
n
234
PRO
207
A
GLY
208
n
235
GLY
208
A
THR
209
n
236
THR
209
A
SER
210
n
237
SER
210
A
SER
211
n
238
SER
211
A
PHE
212
n
239
PHE
212
A
ASP
213
n
240
ASP
213
A
GLY
214
n
241
GLY
214
A
ARG
215
n
242
ARG
215
A
LEU
216
n
243
LEU
216
A
ALA
217
n
244
ALA
217
A
ALA
218
n
245
ALA
218
A
ALA
219
n
246
ALA
219
A
ARG
220
n
247
ARG
220
A
LYS
221
n
248
LYS
221
A
VAL
222
n
249
VAL
222
A
ALA
223
n
250
ALA
223
A
GLY
224
n
251
GLY
224
A
ALA
225
n
252
ALA
225
A
GLY
226
n
253
GLY
226
A
TYR
227
n
254
TYR
227
A
LYS
228
n
255
LYS
228
A
LEU
229
n
256
LEU
229
A
GLY
230
n
257
GLY
230
A
PHE
231
n
258
PHE
231
A
VAL
232
n
259
VAL
232
A
VAL
233
n
260
VAL
233
A
ALA
234
n
261
ALA
234
A
PRO
235
n
262
PRO
235
A
ILE
236
n
263
ILE
236
A
TYR
237
n
264
TYR
237
A
ARG
238
n
265
ARG
238
A
HIS
239
n
266
HIS
239
A
GLU
240
n
267
GLU
240
A
GLY
241
n
268
GLY
241
A
TRP
242
n
269
TRP
242
A
GLU
243
n
270
GLU
243
A
ARG
244
n
271
ARG
244
A
GLY
245
n
272
GLY
245
A
TYR
246
n
273
TYR
246
A
PHE
247
n
274
PHE
247
A
GLU
248
n
275
GLU
248
A
LEU
249
n
276
LEU
249
A
PHE
250
n
277
PHE
250
A
GLN
251
n
278
GLN
251
A
GLU
252
n
279
GLU
252
A
LEU
253
n
280
LEU
253
A
ALA
254
n
281
ALA
254
A
ARG
255
n
282
ARG
255
A
GLN
256
n
283
GLN
256
A
LEU
257
n
284
LEU
257
A
GLU
258
n
285
GLU
258
A
GLY
259
n
286
GLY
259
A
MET
260
n
287
MET
260
A
ASP
261
n
288
ASP
261
A
LEU
262
n
289
LEU
262
A
SER
263
n
290
SER
263
A
ASP
264
n
291
ASP
264
A
LEU
265
n
292
LEU
265
A
THR
266
n
293
THR
266
A
PHE
267
n
294
PHE
267
A
GLU
268
n
295
GLU
268
A
LEU
269
n
296
LEU
269
A
ILE
270
n
297
ILE
270
A
GLN
271
n
298
GLN
271
A
HIS
272
n
299
HIS
272
A
ARG
273
n
300
ARG
273
A
PHE
274
n
301
PHE
274
A
THR
275
n
302
THR
275
A
LYS
276
n
303
LYS
276
A
PRO
277
n
304
PRO
277
A
ALA
278
n
305
ALA
278
A
LYS
279
n
306
LYS
279
A
ARG
280
n
307
ARG
280
A
VAL
281
n
308
VAL
281
A
ILE
282
n
309
ILE
282
A
GLU
283
n
310
GLU
283
A
GLN
284
n
311
GLN
284
A
ARG
285
n
312
ARG
285
A
TYR
286
n
313
TYR
286
A
PRO
287
n
314
PRO
287
A
LYS
288
n
315
LYS
288
A
THR
289
n
316
THR
289
A
ARG
290
n
317
ARG
290
A
LEU
291
n
318
LEU
291
A
ASP
292
n
319
ASP
292
A
LEU
293
n
320
LEU
293
A
ASP
294
n
321
ASP
294
A
GLU
295
n
322
GLU
295
A
THR
296
n
323
THR
296
A
LYS
297
n
324
LYS
297
A
ARG
298
n
325
ARG
298
A
LYS
299
n
326
LYS
299
A
TYR
300
n
327
TYR
300
A
LYS
301
n
328
LYS
301
A
TRP
302
n
329
TRP
302
A
GLY
303
n
330
GLY
303
A
ARG
304
n
331
ARG
304
A
TYR
305
n
332
TYR
305
A
GLY
306
n
333
GLY
306
A
ILE
307
n
334
ILE
307
A
GLY
308
n
335
GLY
308
A
LYS
309
n
336
LYS
309
A
TYR
310
n
337
TYR
310
A
VAL
311
n
338
VAL
311
A
TYR
312
n
339
TYR
312
A
ARG
313
n
340
ARG
313
A
ASP
314
n
341
ASP
314
A
GLU
315
n
342
GLU
315
A
GLU
316
n
343
GLU
316
A
ALA
317
n
344
ALA
317
A
LYS
318
n
345
LYS
318
A
GLU
319
n
346
GLU
319
A
LEU
320
n
347
LEU
320
A
GLU
321
n
348
GLU
321
A
ASP
322
n
349
ASP
322
A
THR
323
n
350
THR
323
A
MET
324
n
351
MET
324
A
ARG
325
n
352
ARG
325
A
ARG
326
n
353
ARG
326
A
TYR
327
n
354
TYR
327
A
ILE
328
n
355
ILE
328
A
GLU
329
n
356
GLU
329
A
GLN
330
n
357
GLN
330
A
PHE
331
n
358
PHE
331
A
PHE
332
n
359
PHE
332
A
PRO
333
n
360
PRO
333
A
GLY
334
n
361
GLY
334
A
ALA
335
n
362
ALA
335
A
TYR
336
n
363
TYR
336
A
VAL
337
n
364
VAL
337
A
GLN
338
n
365
GLN
338
A
TYR
339
n
366
TYR
339
A
PHE
340
n
367
PHE
340
A
THR
341
n
368
THR
341
A
author_and_software_defined_assembly
PISA
1
monomeric
A
CYS
90
A
SG
CYS
117
1_555
A
SF4
401
B
FE4
SF4
1_555
A
SF4
401
B
S1
SF4
1_555
108.7
A
CYS
90
A
SG
CYS
117
1_555
A
SF4
401
B
FE4
SF4
1_555
A
SF4
401
B
S2
SF4
1_555
106.8
A
SF4
401
B
S1
SF4
1_555
A
SF4
401
B
FE4
SF4
1_555
A
SF4
401
B
S2
SF4
1_555
107.8
A
CYS
90
A
SG
CYS
117
1_555
A
SF4
401
B
FE4
SF4
1_555
A
SF4
401
B
S3
SF4
1_555
121.7
A
SF4
401
B
S1
SF4
1_555
A
SF4
401
B
FE4
SF4
1_555
A
SF4
401
B
S3
SF4
1_555
106.3
A
SF4
401
B
S2
SF4
1_555
A
SF4
401
B
FE4
SF4
1_555
A
SF4
401
B
S3
SF4
1_555
105.0
A
CYS
94
A
SG
CYS
121
1_555
A
SF4
401
B
FE1
SF4
1_555
A
SF4
401
B
S2
SF4
1_555
115.7
A
CYS
94
A
SG
CYS
121
1_555
A
SF4
401
B
FE1
SF4
1_555
A
SF4
401
B
S3
SF4
1_555
112.5
A
SF4
401
B
S2
SF4
1_555
A
SF4
401
B
FE1
SF4
1_555
A
SF4
401
B
S3
SF4
1_555
105.4
A
CYS
94
A
SG
CYS
121
1_555
A
SF4
401
B
FE1
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
110.9
A
SF4
401
B
S2
SF4
1_555
A
SF4
401
B
FE1
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
104.4
A
SF4
401
B
S3
SF4
1_555
A
SF4
401
B
FE1
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
107.2
A
CYS
97
A
SG
CYS
124
1_555
A
SF4
401
B
FE2
SF4
1_555
A
SF4
401
B
S1
SF4
1_555
120.3
A
CYS
97
A
SG
CYS
124
1_555
A
SF4
401
B
FE2
SF4
1_555
A
SF4
401
B
S3
SF4
1_555
109.1
A
SF4
401
B
S1
SF4
1_555
A
SF4
401
B
FE2
SF4
1_555
A
SF4
401
B
S3
SF4
1_555
106.8
A
CYS
97
A
SG
CYS
124
1_555
A
SF4
401
B
FE2
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
110.9
A
SF4
401
B
S1
SF4
1_555
A
SF4
401
B
FE2
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
101.8
A
SF4
401
B
S3
SF4
1_555
A
SF4
401
B
FE2
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
107.2
A
EEM
402
C
N
EEM
1_555
A
SF4
401
B
FE3
SF4
1_555
A
SF4
401
B
S1
SF4
1_555
80.5
A
EEM
402
C
N
EEM
1_555
A
SF4
401
B
FE3
SF4
1_555
A
SF4
401
B
S2
SF4
1_555
95.2
A
SF4
401
B
S1
SF4
1_555
A
SF4
401
B
FE3
SF4
1_555
A
SF4
401
B
S2
SF4
1_555
107.2
A
EEM
402
C
N
EEM
1_555
A
SF4
401
B
FE3
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
158.7
A
SF4
401
B
S1
SF4
1_555
A
SF4
401
B
FE3
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
101.3
A
SF4
401
B
S2
SF4
1_555
A
SF4
401
B
FE3
SF4
1_555
A
SF4
401
B
S4
SF4
1_555
104.4
A
EEM
402
C
N
EEM
1_555
A
SF4
401
B
FE3
SF4
1_555
A
EEM
402
C
O
EEM
1_555
75.0
A
SF4
401
B
S1
SF4
1_555
A
SF4
401
B
FE3
SF4
1_555
A
EEM
402
C
O
EEM
1_555
148.1
A
SF4
401
B
S2
SF4
1_555
A
SF4
401
B
FE3
SF4
1_555
A
EEM
402
C
O
EEM
1_555
95.1
A
SF4
401
B
S4
SF4
1_555
A
SF4
401
B
FE3
SF4
1_555
A
EEM
402
C
O
EEM
1_555
94.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
36
A
O
ARG
63
A
N
VAL
9
A
N
VAL
36
A
N
TYR
10
A
N
TYR
37
A
O
VAL
65
A
O
VAL
92
A
N
VAL
64
A
N
VAL
91
A
O
ILE
109
A
O
ILE
136
A
O
ARG
110
A
O
ARG
137
A
N
THR
88
A
N
THR
115
A
N
SER
76
A
N
SER
103
A
O
ALA
80
A
O
ALA
107
A
N
TYR
82
A
N
TYR
109
A
O
GLU
137
A
O
GLU
164
A
N
PHE
136
A
N
PHE
163
A
O
ARG
170
A
O
ARG
197
A
N
PHE
171
A
N
PHE
198
A
O
ARG
193
A
O
ARG
220
A
N
PHE
192
A
N
PHE
219
A
O
LYS
228
A
O
LYS
255
A
N
VAL
233
A
N
VAL
260
A
O
GLU
268
A
O
GLU
295
A
N
PHE
267
A
N
PHE
294
A
O
GLN
338
A
O
GLN
365
A
N
LYS
301
A
N
LYS
328
A
O
LYS
309
A
O
LYS
336
1
A
MET
-26
A
MET
1
1
Y
1
A
LYS
-25
A
LYS
2
1
Y
1
A
HIS
-24
A
HIS
3
1
Y
1
A
HIS
-23
A
HIS
4
1
Y
1
A
HIS
-22
A
HIS
5
1
Y
1
A
HIS
-21
A
HIS
6
1
Y
1
A
HIS
-20
A
HIS
7
1
Y
1
A
HIS
-19
A
HIS
8
1
Y
1
A
PRO
-18
A
PRO
9
1
Y
1
A
MET
-17
A
MET
10
1
Y
1
A
SER
-16
A
SER
11
1
Y
1
A
ASP
-15
A
ASP
12
1
Y
1
A
TYR
-14
A
TYR
13
1
Y
1
A
ASP
-13
A
ASP
14
1
Y
1
A
ILE
-12
A
ILE
15
1
Y
1
A
PRO
-11
A
PRO
16
1
Y
1
A
THR
-10
A
THR
17
1
Y
1
A
THR
-9
A
THR
18
1
Y
1
A
GLU
-8
A
GLU
19
1
Y
1
A
ASN
-7
A
ASN
20
1
Y
1
A
LEU
-6
A
LEU
21
1
Y
1
A
TYR
-5
A
TYR
22
1
Y
1
A
PHE
-4
A
PHE
23
1
Y
1
A
GLN
-3
A
GLN
24
1
Y
1
A
GLY
-2
A
GLY
25
1
Y
1
A
ALA
-1
A
ALA
26
1
Y
1
A
MET
0
A
MET
27
1
Y
1
A
GLY
1
A
GLY
28
1
Y
1
A
LEU
71
114.44
-103.63
1
A
ARG
304
-101.91
-71.33
24.649
-1.08
0.00
0.00
-0.17
0.00
1.25
0.948
0.930
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24523
0.20918
0.211
0.21100
2.00
47.35
1706
31721
31721
5.1
98.25
3.749
0.105
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.169
0.156
0.80
0.80
1.40
wt structure without substrate
MAXIMUM LIKELIHOOD
MASK
2.00
47.35
176
3037
59
0
2802
0.006
0.022
2952
0.001
0.020
2096
0.987
1.978
3994
0.742
3.000
5027
5.419
5.000
343
30.630
21.959
148
13.224
15.000
506
14.893
15.000
31
0.057
0.200
413
0.003
0.021
3233
0.001
0.020
679
0.333
1.500
1701
0.048
1.500
692
0.645
2.000
2743
0.899
3.000
1251
1.548
4.500
1237
0.307
0.261
2.052
126
2239
20
96.22
2.0
47.35
4FHG
33427
33427
-3
-3
0.078
1
98.2
0.0454
2.0
2.1
1
96.4
data collection
HEIDI
phasing
PHASER
refinement
REFMAC
5.5.0102
data reduction
XDS
data scaling
XSCALE
Spore photoproduct lyase C140S mutant
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
6
N
N
A
PRO
13
A
PRO
40
HELX_P
A
SER
17
A
SER
44
5
1
5
A
TYR
18
A
TYR
45
HELX_P
A
MET
31
A
MET
58
1
2
14
A
THR
51
A
THR
78
HELX_P
A
LYS
60
A
LYS
87
1
3
10
A
CYS
97
A
CYS
124
HELX_P
A
THR
102
A
THR
129
5
4
6
A
ASN
114
A
ASN
141
HELX_P
A
ALA
130
A
ALA
157
1
5
17
A
ASP
143
A
ASP
170
HELX_P
A
HIS
149
A
HIS
176
1
6
7
A
HIS
152
A
HIS
179
HELX_P
A
THR
164
A
THR
191
1
7
13
A
VAL
178
A
VAL
205
HELX_P
A
LEU
182
A
LEU
209
5
8
5
A
SER
198
A
SER
225
HELX_P
A
GLU
206
A
GLU
233
1
9
9
A
SER
211
A
SER
238
HELX_P
A
ALA
225
A
ALA
252
1
10
15
A
GLY
241
A
GLY
268
HELX_P
A
LEU
257
A
LEU
284
1
11
17
A
PRO
277
A
PRO
304
HELX_P
A
TYR
286
A
TYR
313
1
12
10
A
ASP
294
A
ASP
321
HELX_P
A
THR
296
A
THR
323
5
13
3
A
ARG
313
A
ARG
340
HELX_P
A
PHE
332
A
PHE
359
1
14
20
metalc
2.315
A
CYS
90
A
SG
CYS
117
1_555
A
SF4
401
B
FE4
SF4
1_555
metalc
2.277
A
CYS
94
A
SG
CYS
121
1_555
A
SF4
401
B
FE1
SF4
1_555
metalc
2.196
A
CYS
97
A
SG
CYS
124
1_555
A
SF4
401
B
FE2
SF4
1_555
metalc
2.160
A
SF4
401
B
FE3
SF4
1_555
A
EEM
402
C
N
EEM
1_555
metalc
2.348
A
SF4
401
B
FE3
SF4
1_555
A
EEM
402
C
O
EEM
1_555
LYASE
partial TIM-barrel, DNA repair, damaged DNA, lyase
A
LYS
2
A
LYS
29
1
A
PRO
3
A
PRO
30
-9.51
A
THR
70
A
THR
97
1
A
LEU
71
A
LEU
98
26.56
A
LYS
77
A
LYS
104
1
A
PRO
78
A
PRO
105
0.62
A
ALA
130
A
ALA
157
1
A
PRO
131
A
PRO
158
6.00
A
ALA
234
A
ALA
261
1
A
PRO
235
A
PRO
262
-5.42
A4IQU1_GEOTN
UNP
1
2
A4IQU1
KPFVPKLVYFEPEALSYPLGKELYEKFTQMGIKIRETTSHNQVRGIPGETELARYRNAKSTLVVGVRRTLKFDSSKPSAE
YAIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFI
GATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINSRYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIYRHEG
WERGYFELFQELARQLEGMDLSDLTFELIQHRFTKPAKRVIEQRYPKTRLDLDETKRKYKWGRYGIGKYVYRDEEAKELE
DTMRRYIEQFFPGAYVQYFT
2
341
4FHG
2
341
A4IQU1
A
1
29
368
1
expression tag
MET
-26
4FHG
A
A4IQU1
UNP
1
1
expression tag
LYS
-25
4FHG
A
A4IQU1
UNP
2
1
expression tag
HIS
-24
4FHG
A
A4IQU1
UNP
3
1
expression tag
HIS
-23
4FHG
A
A4IQU1
UNP
4
1
expression tag
HIS
-22
4FHG
A
A4IQU1
UNP
5
1
expression tag
HIS
-21
4FHG
A
A4IQU1
UNP
6
1
expression tag
HIS
-20
4FHG
A
A4IQU1
UNP
7
1
expression tag
HIS
-19
4FHG
A
A4IQU1
UNP
8
1
expression tag
PRO
-18
4FHG
A
A4IQU1
UNP
9
1
expression tag
MET
-17
4FHG
A
A4IQU1
UNP
10
1
expression tag
SER
-16
4FHG
A
A4IQU1
UNP
11
1
expression tag
ASP
-15
4FHG
A
A4IQU1
UNP
12
1
expression tag
TYR
-14
4FHG
A
A4IQU1
UNP
13
1
expression tag
ASP
-13
4FHG
A
A4IQU1
UNP
14
1
expression tag
ILE
-12
4FHG
A
A4IQU1
UNP
15
1
expression tag
PRO
-11
4FHG
A
A4IQU1
UNP
16
1
expression tag
THR
-10
4FHG
A
A4IQU1
UNP
17
1
expression tag
THR
-9
4FHG
A
A4IQU1
UNP
18
1
expression tag
GLU
-8
4FHG
A
A4IQU1
UNP
19
1
expression tag
ASN
-7
4FHG
A
A4IQU1
UNP
20
1
expression tag
LEU
-6
4FHG
A
A4IQU1
UNP
21
1
expression tag
TYR
-5
4FHG
A
A4IQU1
UNP
22
1
expression tag
PHE
-4
4FHG
A
A4IQU1
UNP
23
1
expression tag
GLN
-3
4FHG
A
A4IQU1
UNP
24
1
expression tag
GLY
-2
4FHG
A
A4IQU1
UNP
25
1
expression tag
ALA
-1
4FHG
A
A4IQU1
UNP
26
1
expression tag
MET
0
4FHG
A
A4IQU1
UNP
27
1
expression tag
GLY
1
4FHG
A
A4IQU1
UNP
28
1
CYS
engineered mutation
SER
140
4FHG
A
A4IQU1
UNP
140
167
5
8
2
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LYS
34
A
LYS
61
A
GLU
37
A
GLU
64
A
LEU
8
A
LEU
35
A
PHE
11
A
PHE
38
A
THR
62
A
THR
89
A
GLY
66
A
GLY
93
A
ILE
109
A
ILE
136
A
TYR
112
A
TYR
139
A
ALA
87
A
ALA
114
A
THR
88
A
THR
115
A
SER
75
A
SER
102
A
SER
76
A
SER
103
A
ALA
80
A
ALA
107
A
ALA
83
A
ALA
110
A
THR
134
A
THR
161
A
GLU
137
A
GLU
164
A
GLY
167
A
GLY
194
A
THR
173
A
THR
200
A
THR
190
A
THR
217
A
ILE
196
A
ILE
223
A
LYS
228
A
LYS
255
A
ILE
236
A
ILE
263
A
THR
266
A
THR
293
A
GLN
271
A
GLN
298
A
TYR
336
A
TYR
363
A
PHE
340
A
PHE
367
A
ARG
298
A
ARG
325
A
LYS
301
A
LYS
328
A
LYS
309
A
LYS
336
A
TYR
312
A
TYR
339
BINDING SITE FOR RESIDUE SF4 A 401
A
SF4
401
Software
7
BINDING SITE FOR RESIDUE EEM A 402
A
EEM
402
Software
16
BINDING SITE FOR RESIDUE SO4 A 403
A
SO4
403
Software
5
BINDING SITE FOR RESIDUE SO4 A 404
A
SO4
404
Software
6
BINDING SITE FOR RESIDUE SO4 A 405
A
SO4
405
Software
1
BINDING SITE FOR RESIDUE SO4 A 406
A
SO4
406
Software
4
BINDING SITE FOR RESIDUE EDO A 407
A
EDO
407
Software
1
A
CYS
90
A
CYS
117
7
1_555
A
GLY
92
A
GLY
119
7
1_555
A
CYS
94
A
CYS
121
7
1_555
A
CYS
97
A
CYS
124
7
1_555
A
LEU
99
A
LEU
126
7
1_555
A
LYS
174
A
LYS
201
7
1_555
A
EEM
402
C
EEM
7
1_555
A
TYR
96
A
TYR
123
16
1_555
A
CYS
97
A
CYS
124
16
1_555
A
TYR
98
A
TYR
125
16
1_555
A
ALA
139
A
ALA
166
16
1_555
A
SER
142
A
SER
169
16
1_555
A
ASP
143
A
ASP
170
16
1_555
A
VAL
172
A
VAL
199
16
1_555
A
LYS
174
A
LYS
201
16
1_555
A
SER
195
A
SER
222
16
1_555
A
VAL
232
A
VAL
259
16
1_555
A
ALA
234
A
ALA
261
16
1_555
A
PRO
235
A
PRO
262
16
1_555
A
GLN
271
A
GLN
298
16
1_555
A
HIS
272
A
HIS
299
16
1_555
A
ARG
273
A
ARG
300
16
1_555
A
SF4
401
B
SF4
16
1_555
A
ARG
68
A
ARG
95
5
1_555
A
THR
88
A
THR
115
5
1_555
A
THR
141
A
THR
168
5
1_555
A
HOH
621
I
HOH
5
1_555
A
HOH
633
I
HOH
5
1_555
A
ARG
135
A
ARG
162
6
1_555
A
ARG
170
A
ARG
197
6
1_555
A
ARG
191
A
ARG
218
6
1_555
A
LYS
228
A
LYS
255
6
1_555
A
GLN
338
A
GLN
365
6
1_555
A
HOH
573
I
HOH
6
1_555
A
ARG
36
A
ARG
63
1
1_555
A
GLY
303
A
GLY
330
4
1_555
A
ARG
304
A
ARG
331
4
1_555
A
TYR
305
A
TYR
332
4
1_555
A
GLY
306
A
GLY
333
4
1_555
A
ARG
36
A
ARG
63
1
1_555
19
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