0.018695
0.000000
0.000000
0.000000
0.016033
0.000000
0.000000
0.000000
0.008992
0.00000
0.00000
0.00000
Lunde, B.M.
Magler, I.
Meinhart, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
53.490
62.370
111.210
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H15 N2 O15 P3
484.141
URIDINE 5'-TRIPHOSPHATE
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
Y
157
N
C
Y
158
N
N
Y
159
N
C
Y
160
N
C
Y
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
S
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
N
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
S
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
O
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
R
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
N
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
N
374
N
O
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
R
P
N
388
N
O
N
389
N
O
N
390
N
O
N
391
N
O
N
392
S
P
N
393
N
O
N
394
N
O
N
395
N
O
N
396
N
P
N
397
N
O
N
398
N
O
N
399
N
O
N
400
N
C
N
401
R
C
N
402
N
O
N
403
R
C
N
404
R
C
N
405
N
O
N
406
S
C
N
407
N
O
Y
408
N
N
Y
409
N
C
Y
410
N
C
N
411
N
O
Y
412
N
N
Y
413
N
C
N
414
N
O
Y
415
N
C
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
sing
Y
406
N
sing
Y
407
N
doub
N
408
N
sing
N
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
doub
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
9815
9824
10.1093/nar/gks740
22885303
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity.
2012
10.2210/pdb4fhp/pdb
pdb_00004fhp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2011-03-21
PSI PILATUS 6M
double crystal sagitally focusing Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9786
1.0
X10SA
SLS
0.9786
SYNCHROTRON
SLS BEAMLINE X10SA
39956.754
Poly(A) RNA polymerase protein cid1
2.7.7.-
UNP residues 33-377
1
man
polymer
484.141
URIDINE 5'-TRIPHOSPHATE
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
69
nat
water
Caffeine-induced death protein 1
no
no
GSHMSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLM
DSRVQSDTIALQFYEELIAEGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPM
VLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSL
GSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLY
RIRGEFMAASRLLNSRSYPIPYDSLFEEA
GSHMSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLM
DSRVQSDTIALQFYEELIAEGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPM
VLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSL
GSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLY
RIRGEFMAASRLLNSRSYPIPYDSLFEEA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Fission yeast
972 / ATCC 24843
sample
cid1, SPAC19D5.03
284812
Schizosaccharomyces pombe
469008
Escherichia coli
BL-21(DE3)RIL
plasmid
pET28b
2.32
47.01
VAPOR DIFFUSION, SITTING DROP
9.5
100 mM CHES, pH 9.5, 5-10% w/v PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-08-29
1
1
2012-11-07
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-06-06
REL
REL
UTP
URIDINE 5'-TRIPHOSPHATE
CA
CALCIUM ION
GOL
GLYCEROL
HOH
water
4FH3
PDB ENTRY 4FH3
PDB
experimental model
UTP
1
2
UTP
UTP
401
A
CA
1
3
CA
CA
402
A
GOL
1
4
GOL
GOL
403
A
HOH
1
5
HOH
HOH
501
A
HOH
2
5
HOH
HOH
502
A
HOH
3
5
HOH
HOH
503
A
HOH
4
5
HOH
HOH
504
A
HOH
5
5
HOH
HOH
505
A
HOH
6
5
HOH
HOH
506
A
HOH
7
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
9
5
HOH
HOH
509
A
HOH
10
5
HOH
HOH
510
A
HOH
11
5
HOH
HOH
511
A
HOH
12
5
HOH
HOH
512
A
HOH
13
5
HOH
HOH
513
A
HOH
14
5
HOH
HOH
514
A
HOH
15
5
HOH
HOH
515
A
HOH
16
5
HOH
HOH
516
A
HOH
17
5
HOH
HOH
517
A
HOH
18
5
HOH
HOH
518
A
HOH
19
5
HOH
HOH
519
A
HOH
20
5
HOH
HOH
520
A
HOH
21
5
HOH
HOH
521
A
HOH
22
5
HOH
HOH
522
A
HOH
23
5
HOH
HOH
523
A
HOH
24
5
HOH
HOH
524
A
HOH
25
5
HOH
HOH
525
A
HOH
26
5
HOH
HOH
526
A
HOH
27
5
HOH
HOH
527
A
HOH
28
5
HOH
HOH
528
A
HOH
29
5
HOH
HOH
529
A
HOH
30
5
HOH
HOH
530
A
HOH
31
5
HOH
HOH
531
A
HOH
32
5
HOH
HOH
532
A
HOH
33
5
HOH
HOH
533
A
HOH
34
5
HOH
HOH
534
A
HOH
35
5
HOH
HOH
535
A
HOH
36
5
HOH
HOH
536
A
HOH
37
5
HOH
HOH
537
A
HOH
38
5
HOH
HOH
538
A
HOH
39
5
HOH
HOH
539
A
HOH
40
5
HOH
HOH
540
A
HOH
41
5
HOH
HOH
541
A
HOH
42
5
HOH
HOH
542
A
HOH
43
5
HOH
HOH
543
A
HOH
44
5
HOH
HOH
544
A
HOH
45
5
HOH
HOH
545
A
HOH
46
5
HOH
HOH
546
A
HOH
47
5
HOH
HOH
547
A
HOH
48
5
HOH
HOH
548
A
HOH
49
5
HOH
HOH
549
A
HOH
50
5
HOH
HOH
550
A
HOH
51
5
HOH
HOH
551
A
HOH
52
5
HOH
HOH
552
A
HOH
53
5
HOH
HOH
553
A
HOH
54
5
HOH
HOH
554
A
HOH
55
5
HOH
HOH
555
A
HOH
56
5
HOH
HOH
556
A
HOH
57
5
HOH
HOH
557
A
HOH
58
5
HOH
HOH
558
A
HOH
59
5
HOH
HOH
559
A
HOH
60
5
HOH
HOH
560
A
HOH
61
5
HOH
HOH
561
A
HOH
62
5
HOH
HOH
562
A
HOH
63
5
HOH
HOH
563
A
HOH
64
5
HOH
HOH
564
A
HOH
65
5
HOH
HOH
565
A
HOH
66
5
HOH
HOH
566
A
HOH
67
5
HOH
HOH
567
A
HOH
68
5
HOH
HOH
568
A
HOH
69
5
HOH
HOH
569
A
n
1
29
A
n
2
30
A
n
3
31
A
n
4
32
A
n
5
33
A
n
6
34
A
n
7
35
A
n
8
36
A
n
9
37
A
n
10
38
A
n
11
39
A
SER
40
n
12
SER
40
A
HIS
41
n
13
HIS
41
A
LYS
42
n
14
LYS
42
A
GLU
43
n
15
GLU
43
A
PHE
44
n
16
PHE
44
A
THR
45
n
17
THR
45
A
LYS
46
n
18
LYS
46
A
PHE
47
n
19
PHE
47
A
CYS
48
n
20
CYS
48
A
TYR
49
n
21
TYR
49
A
GLU
50
n
22
GLU
50
A
VAL
51
n
23
VAL
51
A
TYR
52
n
24
TYR
52
A
ASN
53
n
25
ASN
53
A
GLU
54
n
26
GLU
54
A
ILE
55
n
27
ILE
55
A
LYS
56
n
28
LYS
56
A
ILE
57
n
29
ILE
57
A
SER
58
n
30
SER
58
A
ASP
59
n
31
ASP
59
A
LYS
60
n
32
LYS
60
A
GLU
61
n
33
GLU
61
A
PHE
62
n
34
PHE
62
A
LYS
63
n
35
LYS
63
A
GLU
64
n
36
GLU
64
A
LYS
65
n
37
LYS
65
A
ARG
66
n
38
ARG
66
A
ALA
67
n
39
ALA
67
A
ALA
68
n
40
ALA
68
A
LEU
69
n
41
LEU
69
A
ASP
70
n
42
ASP
70
A
THR
71
n
43
THR
71
A
LEU
72
n
44
LEU
72
A
ARG
73
n
45
ARG
73
A
LEU
74
n
46
LEU
74
A
CYS
75
n
47
CYS
75
A
LEU
76
n
48
LEU
76
A
LYS
77
n
49
LYS
77
A
ARG
78
n
50
ARG
78
A
ILE
79
n
51
ILE
79
A
SER
80
n
52
SER
80
A
PRO
81
n
53
PRO
81
A
ASP
82
n
54
ASP
82
A
ALA
83
n
55
ALA
83
A
GLU
84
n
56
GLU
84
A
LEU
85
n
57
LEU
85
A
VAL
86
n
58
VAL
86
A
ALA
87
n
59
ALA
87
A
PHE
88
n
60
PHE
88
A
GLY
89
n
61
GLY
89
A
SER
90
n
62
SER
90
A
LEU
91
n
63
LEU
91
A
GLU
92
n
64
GLU
92
A
SER
93
n
65
SER
93
A
GLY
94
n
66
GLY
94
A
LEU
95
n
67
LEU
95
A
ALA
96
n
68
ALA
96
A
LEU
97
n
69
LEU
97
A
LYS
98
n
70
LYS
98
A
ASN
99
n
71
ASN
99
A
SER
100
n
72
SER
100
A
ASP
101
n
73
ASP
101
A
MET
102
n
74
MET
102
A
ASP
103
n
75
ASP
103
A
LEU
104
n
76
LEU
104
A
CYS
105
n
77
CYS
105
A
VAL
106
n
78
VAL
106
A
LEU
107
n
79
LEU
107
A
MET
108
n
80
MET
108
A
ASP
109
n
81
ASP
109
A
SER
110
n
82
SER
110
A
ARG
111
n
83
ARG
111
A
VAL
112
n
84
VAL
112
A
GLN
113
n
85
GLN
113
A
SER
114
n
86
SER
114
A
ASP
115
n
87
ASP
115
A
THR
116
n
88
THR
116
A
ILE
117
n
89
ILE
117
A
ALA
118
n
90
ALA
118
A
LEU
119
n
91
LEU
119
A
GLN
120
n
92
GLN
120
A
PHE
121
n
93
PHE
121
A
TYR
122
n
94
TYR
122
A
GLU
123
n
95
GLU
123
A
GLU
124
n
96
GLU
124
A
LEU
125
n
97
LEU
125
A
ILE
126
n
98
ILE
126
A
ALA
127
n
99
ALA
127
A
GLU
128
n
100
GLU
128
A
GLY
129
n
101
GLY
129
A
PHE
130
n
102
PHE
130
A
GLU
131
n
103
GLU
131
A
GLY
132
n
104
GLY
132
A
LYS
133
n
105
LYS
133
A
PHE
134
n
106
PHE
134
A
LEU
135
n
107
LEU
135
A
GLN
136
n
108
GLN
136
A
ARG
137
n
109
ARG
137
A
ALA
138
n
110
ALA
138
A
ARG
139
n
111
ARG
139
A
ILE
140
n
112
ILE
140
A
PRO
141
n
113
PRO
141
A
ILE
142
n
114
ILE
142
A
ILE
143
n
115
ILE
143
A
LYS
144
n
116
LYS
144
A
LEU
145
n
117
LEU
145
A
THR
146
n
118
THR
146
A
SER
147
n
119
SER
147
A
ASP
148
n
120
ASP
148
A
THR
149
n
121
THR
149
A
LYS
150
n
122
LYS
150
A
ASN
151
n
123
ASN
151
A
GLY
152
n
124
GLY
152
A
PHE
153
n
125
PHE
153
A
GLY
154
n
126
GLY
154
A
ALA
155
n
127
ALA
155
A
SER
156
n
128
SER
156
A
PHE
157
n
129
PHE
157
A
GLN
158
n
130
GLN
158
A
CYS
159
n
131
CYS
159
A
ASP
160
n
132
ASP
160
A
ILE
161
n
133
ILE
161
A
GLY
162
n
134
GLY
162
A
PHE
163
n
135
PHE
163
A
ASN
164
n
136
ASN
164
A
ASN
165
n
137
ASN
165
A
ARG
166
n
138
ARG
166
A
LEU
167
n
139
LEU
167
A
ALA
168
n
140
ALA
168
A
ILE
169
n
141
ILE
169
A
HIS
170
n
142
HIS
170
A
ASN
171
n
143
ASN
171
A
THR
172
n
144
THR
172
A
LEU
173
n
145
LEU
173
A
LEU
174
n
146
LEU
174
A
LEU
175
n
147
LEU
175
A
SER
176
n
148
SER
176
A
SER
177
n
149
SER
177
A
TYR
178
n
150
TYR
178
A
THR
179
n
151
THR
179
A
LYS
180
n
152
LYS
180
A
LEU
181
n
153
LEU
181
A
ASP
182
n
154
ASP
182
A
ALA
183
n
155
ALA
183
A
ARG
184
n
156
ARG
184
A
LEU
185
n
157
LEU
185
A
LYS
186
n
158
LYS
186
A
PRO
187
n
159
PRO
187
A
MET
188
n
160
MET
188
A
VAL
189
n
161
VAL
189
A
LEU
190
n
162
LEU
190
A
LEU
191
n
163
LEU
191
A
VAL
192
n
164
VAL
192
A
LYS
193
n
165
LYS
193
A
HIS
194
n
166
HIS
194
A
TRP
195
n
167
TRP
195
A
ALA
196
n
168
ALA
196
A
LYS
197
n
169
LYS
197
A
ARG
198
n
170
ARG
198
A
LYS
199
n
171
LYS
199
A
GLN
200
n
172
GLN
200
A
ILE
201
n
173
ILE
201
A
ASN
202
n
174
ASN
202
A
SER
203
n
175
SER
203
A
PRO
204
n
176
PRO
204
A
TYR
205
n
177
TYR
205
A
PHE
206
n
178
PHE
206
A
GLY
207
n
179
GLY
207
A
THR
208
n
180
THR
208
A
LEU
209
n
181
LEU
209
A
SER
210
n
182
SER
210
A
SER
211
n
183
SER
211
A
TYR
212
n
184
TYR
212
A
GLY
213
n
185
GLY
213
A
TYR
214
n
186
TYR
214
A
VAL
215
n
187
VAL
215
A
LEU
216
n
188
LEU
216
A
MET
217
n
189
MET
217
A
VAL
218
n
190
VAL
218
A
LEU
219
n
191
LEU
219
A
TYR
220
n
192
TYR
220
A
TYR
221
n
193
TYR
221
A
LEU
222
n
194
LEU
222
A
ILE
223
n
195
ILE
223
A
HIS
224
n
196
HIS
224
A
VAL
225
n
197
VAL
225
A
ILE
226
n
198
ILE
226
A
LYS
227
n
199
LYS
227
A
PRO
228
n
200
PRO
228
A
PRO
229
n
201
PRO
229
A
VAL
230
n
202
VAL
230
A
PHE
231
n
203
PHE
231
A
PRO
232
n
204
PRO
232
A
ASN
233
n
205
ASN
233
A
LEU
234
n
206
LEU
234
A
LEU
235
n
207
LEU
235
A
LEU
236
n
208
LEU
236
A
SER
237
n
209
SER
237
A
PRO
238
n
210
PRO
238
A
LEU
239
n
211
LEU
239
A
LYS
240
n
212
LYS
240
A
GLN
241
n
213
GLN
241
A
GLU
242
n
214
GLU
242
A
LYS
243
n
215
LYS
243
A
ILE
244
n
216
ILE
244
A
VAL
245
n
217
VAL
245
A
ASP
246
n
218
ASP
246
A
GLY
247
n
219
GLY
247
A
PHE
248
n
220
PHE
248
A
ASP
249
n
221
ASP
249
A
VAL
250
n
222
VAL
250
A
GLY
251
n
223
GLY
251
A
PHE
252
n
224
PHE
252
A
ASP
253
n
225
ASP
253
A
ASP
254
n
226
ASP
254
A
LYS
255
n
227
LYS
255
A
LEU
256
n
228
LEU
256
A
GLU
257
n
229
GLU
257
A
ASP
258
n
230
ASP
258
A
ILE
259
n
231
ILE
259
A
PRO
260
n
232
PRO
260
A
PRO
261
n
233
PRO
261
A
SER
262
n
234
SER
262
A
GLN
263
n
235
GLN
263
A
ASN
264
n
236
ASN
264
A
TYR
265
n
237
TYR
265
A
SER
266
n
238
SER
266
A
SER
267
n
239
SER
267
A
LEU
268
n
240
LEU
268
A
GLY
269
n
241
GLY
269
A
SER
270
n
242
SER
270
A
LEU
271
n
243
LEU
271
A
LEU
272
n
244
LEU
272
A
HIS
273
n
245
HIS
273
A
GLY
274
n
246
GLY
274
A
PHE
275
n
247
PHE
275
A
PHE
276
n
248
PHE
276
A
ARG
277
n
249
ARG
277
A
PHE
278
n
250
PHE
278
A
TYR
279
n
251
TYR
279
A
ALA
280
n
252
ALA
280
A
TYR
281
n
253
TYR
281
A
LYS
282
n
254
LYS
282
A
PHE
283
n
255
PHE
283
A
GLU
284
n
256
GLU
284
A
PRO
285
n
257
PRO
285
A
ARG
286
n
258
ARG
286
A
GLU
287
n
259
GLU
287
A
LYS
288
n
260
LYS
288
A
VAL
289
n
261
VAL
289
A
VAL
290
n
262
VAL
290
A
THR
291
n
263
THR
291
A
PHE
292
n
264
PHE
292
A
ARG
293
n
265
ARG
293
A
ARG
294
n
266
ARG
294
A
PRO
295
n
267
PRO
295
A
ASP
296
n
268
ASP
296
A
GLY
297
n
269
GLY
297
A
TYR
298
n
270
TYR
298
A
LEU
299
n
271
LEU
299
A
THR
300
n
272
THR
300
A
LYS
301
n
273
LYS
301
A
GLN
302
n
274
GLN
302
A
GLU
303
n
275
GLU
303
A
LYS
304
n
276
LYS
304
A
GLY
305
n
277
GLY
305
A
TRP
306
n
278
TRP
306
A
THR
307
n
279
THR
307
A
n
280
308
A
n
281
309
A
n
282
310
A
n
283
311
A
n
284
312
A
n
285
313
A
n
286
314
A
n
287
315
A
n
288
316
A
n
289
317
A
n
290
318
A
n
291
319
A
n
292
320
A
n
293
321
A
n
294
322
A
ARG
323
n
295
ARG
323
A
TYR
324
n
296
TYR
324
A
ILE
325
n
297
ILE
325
A
LEU
326
n
298
LEU
326
A
ALA
327
n
299
ALA
327
A
ILE
328
n
300
ILE
328
A
GLU
329
n
301
GLU
329
A
ASP
330
n
302
ASP
330
A
PRO
331
n
303
PRO
331
A
PHE
332
n
304
PHE
332
A
GLU
333
n
305
GLU
333
A
ILE
334
n
306
ILE
334
A
SER
335
n
307
SER
335
A
HIS
336
n
308
HIS
336
A
ASN
337
n
309
ASN
337
A
VAL
338
n
310
VAL
338
A
GLY
339
n
311
GLY
339
A
ARG
340
n
312
ARG
340
A
THR
341
n
313
THR
341
A
VAL
342
n
314
VAL
342
A
SER
343
n
315
SER
343
A
SER
344
n
316
SER
344
A
SER
345
n
317
SER
345
A
GLY
346
n
318
GLY
346
A
LEU
347
n
319
LEU
347
A
TYR
348
n
320
TYR
348
A
ARG
349
n
321
ARG
349
A
ILE
350
n
322
ILE
350
A
ARG
351
n
323
ARG
351
A
GLY
352
n
324
GLY
352
A
GLU
353
n
325
GLU
353
A
PHE
354
n
326
PHE
354
A
MET
355
n
327
MET
355
A
ALA
356
n
328
ALA
356
A
ALA
357
n
329
ALA
357
A
SER
358
n
330
SER
358
A
ARG
359
n
331
ARG
359
A
LEU
360
n
332
LEU
360
A
LEU
361
n
333
LEU
361
A
ASN
362
n
334
ASN
362
A
SER
363
n
335
SER
363
A
ARG
364
n
336
ARG
364
A
SER
365
n
337
SER
365
A
TYR
366
n
338
TYR
366
A
PRO
367
n
339
PRO
367
A
ILE
368
n
340
ILE
368
A
PRO
369
n
341
PRO
369
A
TYR
370
n
342
TYR
370
A
ASP
371
n
343
ASP
371
A
SER
372
n
344
SER
372
A
LEU
373
n
345
LEU
373
A
PHE
374
n
346
PHE
374
A
GLU
375
n
347
GLU
375
A
GLU
376
n
348
GLU
376
A
ALA
377
n
349
ALA
377
A
3.7521
0.2145
-2.3933
0.6759
0.1268
2.6645
0.0639
-0.1213
-0.2252
0.1286
-0.1280
-0.0087
0.0326
-0.0789
0.0641
0.0603
-0.0187
-0.0216
0.0396
0.0128
0.0345
refined
-16.8751
-3.2538
2.0619
X-RAY DIFFRACTION
1.5021
0.2354
-0.0851
1.0941
-0.0183
1.0973
-0.0373
0.0486
-0.0224
-0.0151
0.0006
-0.0491
-0.0407
-0.0216
0.0367
0.0544
-0.0012
-0.0075
0.0515
-0.0003
0.0313
refined
-11.3620
5.2413
-17.3834
X-RAY DIFFRACTION
A
40
A
152
X-RAY DIFFRACTION
1
A
153
A
377
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
101
A
OD2
ASP
73
1_555
A
CA
402
C
CA
CA
1_555
A
ASP
103
A
OD2
ASP
75
1_555
97.2
A
ASP
101
A
OD2
ASP
73
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O3G
UTP
1_555
81.4
A
ASP
103
A
OD2
ASP
75
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O3G
UTP
1_555
159.3
A
ASP
101
A
OD2
ASP
73
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O1B
UTP
1_555
136.4
A
ASP
103
A
OD2
ASP
75
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O1B
UTP
1_555
96.5
A
UTP
401
B
O3G
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O1B
UTP
1_555
71.8
A
ASP
101
A
OD2
ASP
73
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O2A
UTP
1_555
133.6
A
ASP
103
A
OD2
ASP
75
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O2A
UTP
1_555
111.1
A
UTP
401
B
O3G
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O2A
UTP
1_555
83.5
A
UTP
401
B
O1B
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
UTP
401
B
O2A
UTP
1_555
77.3
A
ASP
101
A
OD2
ASP
73
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
507
E
O
HOH
1_555
85.4
A
ASP
103
A
OD2
ASP
75
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
507
E
O
HOH
1_555
83.7
A
UTP
401
B
O3G
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
507
E
O
HOH
1_555
116.6
A
UTP
401
B
O1B
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
507
E
O
HOH
1_555
137.2
A
UTP
401
B
O2A
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
507
E
O
HOH
1_555
63.1
A
ASP
101
A
OD2
ASP
73
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
509
E
O
HOH
1_555
69.0
A
ASP
103
A
OD2
ASP
75
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
509
E
O
HOH
1_555
76.9
A
UTP
401
B
O3G
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
509
E
O
HOH
1_555
83.4
A
UTP
401
B
O1B
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
509
E
O
HOH
1_555
74.2
A
UTP
401
B
O2A
UTP
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
509
E
O
HOH
1_555
151.2
A
HOH
507
E
O
HOH
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
509
E
O
HOH
1_555
145.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
84
A
N
GLU
56
A
O
LEU
107
A
O
LEU
79
A
N
LEU
104
A
N
LEU
76
A
O
ASP
160
A
O
ASP
132
A
O
ILE
161
A
O
ILE
133
A
N
ILE
143
A
N
ILE
115
A
O
ILE
142
A
O
ILE
114
A
N
LEU
135
A
N
LEU
107
A
N
VAL
245
A
N
VAL
217
A
O
PHE
248
A
O
PHE
220
1
A
GLY
29
A
GLY
1
1
Y
1
A
SER
30
A
SER
2
1
Y
1
A
HIS
31
A
HIS
3
1
Y
1
A
MET
32
A
MET
4
1
Y
1
A
SER
33
A
SER
5
1
Y
1
A
TYR
34
A
TYR
6
1
Y
1
A
GLN
35
A
GLN
7
1
Y
1
A
LYS
36
A
LYS
8
1
Y
1
A
VAL
37
A
VAL
9
1
Y
1
A
PRO
38
A
PRO
10
1
Y
1
A
ASN
39
A
ASN
11
1
Y
1
A
SER
308
A
SER
280
1
Y
1
A
ALA
309
A
ALA
281
1
Y
1
A
THR
310
A
THR
282
1
Y
1
A
GLU
311
A
GLU
283
1
Y
1
A
HIS
312
A
HIS
284
1
Y
1
A
THR
313
A
THR
285
1
Y
1
A
GLY
314
A
GLY
286
1
Y
1
A
SER
315
A
SER
287
1
Y
1
A
ALA
316
A
ALA
288
1
Y
1
A
ASP
317
A
ASP
289
1
Y
1
A
GLN
318
A
GLN
290
1
Y
1
A
ILE
319
A
ILE
291
1
Y
1
A
ILE
320
A
ILE
292
1
Y
1
A
LYS
321
A
LYS
293
1
Y
1
A
ASP
322
A
ASP
294
1
Y
1
A
ALA
138
48.16
-104.81
1
A
LYS
150
-131.94
-59.36
1
A
THR
208
-119.51
-154.58
29.689
-1.78
0.00
0.00
2.81
0.00
-1.03
0.934
0.912
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
U VALUES : WITH TLS ADDED
0.24480
0.19190
0.19447
2.50
48.204
661
13426
12721
4.9
100.00
17.730
0.192
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.603
0.288
0.80
0.80
1.40
PDB ENTRY 4FH3
MAXIMUM LIKELIHOOD
MASK
2.50
48.204
69
2727
36
0
2622
0.009
0.022
2727
1.220
1.992
3686
5.612
5.000
325
37.205
23.145
124
16.540
15.000
484
18.069
15.000
19
0.081
0.200
399
0.004
0.021
2034
0.487
1.500
1616
0.967
2.000
2612
1.484
3.000
1111
2.590
4.500
1072
0.269
0.216
2.565
48
920
20
100.00
2.5
48.204
4FHP
13426
13382
0
0
1
10.8
5.9
99.7
2.5
2.6
3.23
1
6.0
99.7
data scaling
XDS
refinement
REFMAC
data reduction
XDS
phasing
REFMAC
Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity - CaUTP bound
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
HIS
41
A
HIS
13
HELX_P
A
LYS
56
A
LYS
28
1
1
16
A
SER
58
A
SER
30
HELX_P
A
ARG
78
A
ARG
50
1
2
21
A
GLY
89
A
GLY
61
HELX_P
A
GLY
94
A
GLY
66
1
3
6
A
GLN
113
A
GLN
85
HELX_P
A
GLU
128
A
GLU
100
1
4
16
A
ASN
165
A
ASN
137
HELX_P
A
LYS
180
A
LYS
152
1
5
16
A
ARG
184
A
ARG
156
HELX_P
A
LYS
199
A
LYS
171
1
6
16
A
SER
203
A
SER
175
HELX_P
A
GLY
207
A
GLY
179
5
7
5
A
SER
210
A
SER
182
HELX_P
A
VAL
225
A
VAL
197
1
8
16
A
LYS
255
A
LYS
227
HELX_P
A
ILE
259
A
ILE
231
5
9
5
A
SER
267
A
SER
239
HELX_P
A
LYS
282
A
LYS
254
1
10
16
A
THR
300
A
THR
272
HELX_P
A
GLY
305
A
GLY
277
1
11
6
A
SER
343
A
SER
315
HELX_P
A
SER
363
A
SER
335
1
12
21
A
PRO
369
A
PRO
341
HELX_P
A
GLU
375
A
GLU
347
5
13
7
metalc
2.457
A
ASP
101
A
OD2
ASP
73
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.413
A
ASP
103
A
OD2
ASP
75
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.306
A
UTP
401
B
O3G
UTP
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.348
A
UTP
401
B
O1B
UTP
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.517
A
UTP
401
B
O2A
UTP
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.643
A
CA
402
C
CA
CA
1_555
A
HOH
507
E
O
HOH
1_555
metalc
2.408
A
CA
402
C
CA
CA
1_555
A
HOH
509
E
O
HOH
1_555
TRANSFERASE
nucleotidyltransferase, poly(U) polymerase, TRANSFERASE
A
LYS
227
A
LYS
199
1
A
PRO
228
A
PRO
200
-4.96
A
TYR
366
A
TYR
338
1
A
PRO
367
A
PRO
339
0.60
CID1_SCHPO
UNP
1
33
O13833
SYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV
QSDTIALQFYEELIAEGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLV
KHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLL
HGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRG
EFMAASRLLNSRSYPIPYDSLFEEA
33
377
4FHP
33
377
O13833
A
1
5
349
1
expression tag
GLY
29
4FHP
A
O13833
UNP
1
1
expression tag
SER
30
4FHP
A
O13833
UNP
2
1
expression tag
HIS
31
4FHP
A
O13833
UNP
3
1
expression tag
MET
32
4FHP
A
O13833
UNP
4
5
2
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
84
A
GLU
56
A
PHE
88
A
PHE
60
A
MET
102
A
MET
74
A
LEU
107
A
LEU
79
A
CYS
159
A
CYS
131
A
PHE
163
A
PHE
135
A
ILE
140
A
ILE
112
A
ASP
148
A
ASP
120
A
PHE
130
A
PHE
102
A
ARG
137
A
ARG
109
A
ILE
244
A
ILE
216
A
VAL
245
A
VAL
217
A
PHE
248
A
PHE
220
A
ASP
249
A
ASP
221
BINDING SITE FOR RESIDUE UTP A 401
A
UTP
401
Software
19
BINDING SITE FOR RESIDUE CA A 402
A
CA
402
Software
5
BINDING SITE FOR RESIDUE GOL A 403
A
GOL
403
Software
6
A
PHE
88
A
PHE
60
19
1_555
A
GLY
89
A
GLY
61
19
1_555
A
SER
90
A
SER
62
19
1_555
A
ASP
101
A
ASP
73
19
1_555
A
ASP
103
A
ASP
75
19
1_555
A
ALA
168
A
ALA
140
19
1_555
A
ASN
171
A
ASN
143
19
1_555
A
THR
172
A
THR
144
19
1_555
A
LYS
193
A
LYS
165
19
1_555
A
LYS
197
A
LYS
169
19
1_555
A
SER
211
A
SER
183
19
1_555
A
TYR
212
A
TYR
184
19
1_555
A
HIS
336
A
HIS
308
19
1_555
A
CA
402
C
CA
19
1_555
A
HOH
507
E
HOH
19
1_555
A
HOH
508
E
HOH
19
1_555
A
HOH
509
E
HOH
19
1_555
A
HOH
511
E
HOH
19
1_555
A
HOH
523
E
HOH
19
1_555
A
ASP
101
A
ASP
73
5
1_555
A
ASP
103
A
ASP
75
5
1_555
A
UTP
401
B
UTP
5
1_555
A
HOH
507
E
HOH
5
1_555
A
HOH
509
E
HOH
5
1_555
A
TYR
122
A
TYR
94
6
1_555
A
LYS
133
A
LYS
105
6
1_555
A
PHE
134
A
PHE
106
6
1_555
A
TYR
348
A
TYR
320
6
4_455
A
GLY
352
A
GLY
324
6
4_455
A
GLU
353
A
GLU
325
6
4_455
19
P 21 21 21