0.010994 0.000000 0.001250 0.000000 0.018615 0.000000 0.000000 0.000000 0.012339 0.00000 0.00000 0.00000 Hashimoto, H. Hong, S. Bhagwat, A.S. Zhang, X. Cheng, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 96.49 90.00 90.96 53.72 81.56 C5 H11 O7 P 214.110 2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE ABASIC DEOXYRIBOSE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C5 H6 N2 O3 142.113 5-HYDROXYMETHYL URACIL 5-(HYDROXYMETHYL)PYRIMIDINE-2,4(1H,3H)-DIONE non-polymer H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 R C N 10 N O N 11 N C N 12 S C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N N N 26 S C N 27 N C N 28 N O N 29 N C N 30 N O N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N C N 44 N C N 45 N N N 46 N C N 47 N N N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N N N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N N N 83 S C N 84 N C N 85 N O N 86 N C N 87 N C N 88 N O N 89 N O N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N O N 113 N P N 114 N O N 115 N O N 116 N O N 117 N C N 118 R C N 119 N O N 120 S C N 121 N O N 122 N C N 123 R C Y 124 N N Y 125 N C Y 126 N N Y 127 N C Y 128 N C N 129 N N Y 130 N N Y 131 N C Y 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N P N 150 N O N 151 N O N 152 N O N 153 N C N 154 R C N 155 N O N 156 S C N 157 N O N 158 N C N 159 R C N 160 N N N 161 N C N 162 N O N 163 N N N 164 N C N 165 N N N 166 N C N 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 N C N 193 R C Y 194 N N Y 195 N C Y 196 N N Y 197 N C N 198 N C N 199 N O N 200 N N N 201 N C N 202 N N N 203 N N Y 204 N C N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N O N 220 N P N 221 N O N 222 N O N 223 N O N 224 N C N 225 R C N 226 N O N 227 S C N 228 N O N 229 N C N 230 R C N 231 N N N 232 N C N 233 N O N 234 N N N 235 N C N 236 N O N 237 N C N 238 N C N 239 N C N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 N C N 260 N C N 261 N C N 262 N O N 263 N N N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N O N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 N C N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N N Y 311 N C Y 312 N C Y 313 N N N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 N C N 327 N O N 328 N N N 329 N C N 330 N O N 331 N O N 332 N C N 333 N C N 334 N C N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N O N 342 N H N 343 N H N 344 N N N 345 S C N 346 N C N 347 N O N 348 S C N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C N 371 N C N 372 N C N 373 N C N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 N C N 393 N C N 394 N C N 395 N C N 396 N N N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C N 418 N C N 419 N S N 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N C N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C N 461 N C N 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N N N 474 S C N 475 N C N 476 N O N 477 N C N 478 N O N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N N N 488 S C N 489 N C N 490 N O N 491 R C N 492 N O N 493 N C N 494 N O N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N N N 505 S C N 506 N C N 507 N O N 508 N C Y 509 N C Y 510 N C Y 511 N C Y 512 N N Y 513 N C Y 514 N C Y 515 N C Y 516 N C Y 517 N C N 518 N O N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N N N 532 S C N 533 N C N 534 N O N 535 N C Y 536 N C Y 537 N C Y 538 N C Y 539 N C Y 540 N C Y 541 N C N 542 N O N 543 N O N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N N N 556 S C N 557 N C N 558 N O N 559 N C N 560 N C N 561 N C N 562 N O N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N doub N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing Y 130 N sing Y 131 N sing Y 132 N doub N 133 N sing Y 134 N sing Y 135 N sing Y 136 N doub N 137 N sing Y 138 N doub N 139 N sing N 140 N sing Y 141 N sing Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing Y 203 N sing Y 204 N sing Y 205 N doub N 206 N sing Y 207 N sing N 208 N sing Y 209 N doub N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing Y 313 N sing Y 314 N doub Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing Y 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing Y 437 N doub Y 438 N sing Y 439 N sing N 440 N sing Y 441 N doub N 442 N sing Y 443 N doub N 444 N sing Y 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N sing N 504 N sing N 505 N sing Y 506 N doub Y 507 N sing Y 508 N sing N 509 N sing Y 510 N doub Y 511 N sing Y 512 N sing N 513 N sing Y 514 N sing Y 515 N doub N 516 N sing Y 517 N doub N 518 N sing Y 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N doub N 530 N sing N 531 N sing N 532 N sing N 533 N sing Y 534 N doub Y 535 N sing Y 536 N sing N 537 N sing Y 538 N doub N 539 N sing Y 540 N doub N 541 N sing Y 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N doub N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 40 10203 10214 10.1093/nar/gks845 22962365 Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation. 2012 10.2210/pdb4fnc/pdb pdb_00004fnc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Rosenbaum-Rock monochromator high-resolution double-crystal Si(220) sagittal focusing, Rosenbaum-Rock vertical focusing mirror CCD 2011-10-24 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 1.0 1.0 22-ID APS 1.0 SYNCHROTRON APS BEAMLINE 22-ID 23070.670 G/T mismatch-specific thymine DNA glycosylase 3.2.2.29 human TDG glycosylase domain, UNP residues 111-308 1 man polymer 8646.565 DNA (28-MER) 1 syn polymer 8777.623 DNA (29-MER) 1 syn polymer 142.113 5-HYDROXYMETHYL URACIL 1 syn non-polymer 18.015 water 38 nat water Thymine-DNA glycosylase no no GSHMASFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGK YGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTET LCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV GSHMASFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGK YGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTET LCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV A polypeptide(L) no no (DC)(DA)(DG)(DC)(DT)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DT)(DG)(DA)(DG)(DC)(DA)(DG)(DT) (DG)(DG)(DA)(DC)(DA)(DG)(DC)(DT) CAGCTCTGTACGTGAGCAGTGGACAGCT C polydeoxyribonucleotide no yes (DA)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DA)(DC)(DT)(DG)(DC)(DT)(DC)(DA)(AAB)(DG)(DT) (DA)(DC)(DA)(DG)(DA)(DG)(DC)(DT)(DG)(DT) AGCTGTCCACTGCTCAXGTACAGAGCTGT D polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample TDG 9606 Homo sapiens 562 Escherichia coli pXC1056 1 2.44 49.69 VAPOR DIFFUSION, SITTING DROP 4.6 30% polyethylene glycol (PEG) 4000, 0.2 M ammonium acetate, 0.1 M sodium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K 289 4.448 1 19 C 1 D 28 -2.866 C_DC1:DG28_D 1 -6.836 -0.276 0.098 -0.213 11.446 1 20 C 2 D 27 -1.699 C_DA2:DT27_D 2 -8.884 -0.104 0.590 -0.227 7.519 1 19 C 3 D 26 -0.027 C_DG3:DC26_D 3 -12.626 -0.589 0.399 -0.637 -6.808 1 19 C 4 D 25 2.710 C_DC4:DG25_D 4 -15.042 0.207 0.354 -0.306 -8.909 1 20 C 5 D 24 -2.084 C_DT5:DA24_D 5 -10.910 -0.094 0.376 -0.444 -8.402 1 19 C 6 D 23 -4.875 C_DC6:DG23_D 6 -11.021 0.136 0.231 -0.381 0.390 1 20 C 7 D 22 2.739 C_DT7:DA22_D 7 -13.673 -0.086 0.001 -0.077 -7.701 1 19 C 8 D 21 -1.223 C_DG8:DC21_D 8 -1.363 -0.233 -0.185 -0.406 -8.236 1 20 C 9 D 20 -5.206 C_DT9:DA20_D 9 -11.723 -0.728 0.384 -0.443 2.623 1 20 C 10 D 19 3.710 C_DA10:DT19_D 10 -12.030 -0.040 0.112 -0.397 10.961 1 19 C 11 D 18 -1.154 C_DC11:DG18_D 11 -15.393 0.245 -0.231 -0.179 -13.105 1 20 C 13 D 16 -3.676 C_DT13:DA16_D 12 -12.635 -0.555 0.448 -0.119 -5.460 1 19 C 14 D 15 -0.436 C_DG14:DC15_D 13 -6.598 0.163 -0.128 -0.149 -4.323 1 20 C 15 D 14 0.284 C_DA15:DT14_D 14 -8.513 -0.411 0.234 -0.019 7.734 1 19 C 16 D 13 5.591 C_DG16:DC13_D 15 -14.554 0.121 0.786 0.141 -2.746 1 19 C 17 D 12 2.362 C_DC17:DG12_D 16 -18.766 0.680 0.487 -0.204 10.206 1 20 C 18 D 11 -3.341 C_DA18:DT11_D 17 -19.236 0.174 0.626 -0.359 -5.576 1 19 C 19 D 10 6.981 C_DG19:DC10_D 18 -15.549 -0.130 0.325 0.000 -3.313 1 20 C 20 D 9 0.044 C_DT20:DA9_D 19 -19.469 -0.110 0.329 -0.194 -9.305 1 19 C 21 D 8 0.684 C_DG21:DC8_D 20 -8.217 -0.677 -0.343 -0.589 -7.200 1 19 C 22 D 7 3.984 C_DG22:DC7_D 21 -15.809 -0.765 -0.062 -0.029 -6.597 1 20 C 23 D 6 -1.295 C_DA23:DT6_D 22 -15.534 0.148 -0.177 0.070 7.242 1 19 C 24 D 5 -3.108 C_DC24:DG5_D 23 -2.384 0.943 0.021 -0.436 4.682 1 20 C 25 D 4 0.024 C_DA25:DT4_D 24 -11.459 -0.805 -0.028 -0.302 10.176 1 C 26 D 3 9.022 C_DG26:DC3_D 25 -14.255 -0.615 0.579 0.032 -5.657 1 19 C 27 D 2 -0.963 C_DC27:DG2_D 26 -24.995 0.766 0.863 -0.093 -9.295 1 20 C 28 D 1 -10.022 C_DT28:DA1_D 27 -24.484 0.884 0.319 -0.296 3.141 37.678 C C 1 2 -2.726 D D 28 27 3.136 -1.760 0.423 -0.373 CC_DC1DA2:DT27DG28_DD 1 -0.749 1.161 37.631 -0.359 -0.748 3.126 34.650 C C 2 3 9.517 D D 27 26 3.303 5.634 0.151 -0.645 CC_DA2DG3:DC26DT27_DD 2 -3.775 6.376 34.000 -1.942 -0.829 3.652 37.628 C C 3 4 -5.360 D D 26 25 3.602 -3.453 -0.420 -0.804 CC_DG3DC4:DG25DC26_DD 3 0.584 -0.906 37.471 -0.747 0.736 3.292 34.518 C C 4 5 5.907 D D 25 24 3.332 3.500 -0.347 -0.187 CC_DC4DT5:DA24DG25_DD 4 0.596 -1.007 34.341 -0.865 0.678 3.217 39.169 C C 5 6 1.810 D D 24 23 3.195 1.211 0.368 0.093 CC_DT5DC6:DG23DA24_DD 5 4.050 -6.052 38.950 -0.003 -0.073 3.024 31.892 C C 6 7 10.418 D D 23 22 3.097 5.686 -0.075 -0.023 CC_DC6DT7:DA22DG23_DD 6 3.133 -5.740 31.241 -1.019 0.676 3.553 38.333 C C 7 8 10.418 D D 22 21 3.515 6.805 0.143 0.585 CC_DT7DG8:DC21DA22_DD 7 -1.756 2.689 37.707 -0.037 -0.457 3.349 25.454 C C 8 9 2.005 D D 21 20 3.340 0.878 -0.480 -0.593 CC_DG8DT9:DA20DC21_DD 8 -4.733 10.804 25.003 -1.606 -0.312 3.150 40.858 C C 9 10 5.583 D D 20 19 3.079 3.888 0.412 0.679 CC_DT9DA10:DT19DA20_DD 9 3.294 -4.730 40.552 0.565 -0.244 3.019 33.932 C C 10 11 -1.729 D D 19 18 3.060 -1.007 -0.182 0.197 CC_DA10DC11:DG18DT19_DD 10 3.557 -6.107 33.736 0.488 0.843 3.472 39.515 C C 13 14 7.879 D D 16 15 3.242 5.286 0.882 1.196 CC_DT13DG14:DC15DA16_DD 11 7.023 -10.469 38.563 1.123 -0.445 3.433 34.936 C C 14 15 6.610 D D 15 14 3.263 3.928 -0.994 0.470 CC_DG14DA15:DT14DC15_DD 12 -7.872 13.246 33.843 0.165 0.417 2.921 37.260 C C 15 16 5.617 D D 14 13 3.058 3.571 0.459 -0.254 CC_DA15DG16:DC13DT14_DD 13 -5.635 8.864 36.679 -0.834 -1.407 3.487 38.414 C C 16 17 -9.054 D D 13 12 3.477 -5.935 -0.763 -0.291 CC_DG16DC17:DG12DC13_DD 14 -0.234 0.356 37.969 0.349 1.129 2.838 33.049 C C 17 18 19.605 D D 12 11 2.939 10.953 -0.495 0.184 CC_DC17DA18:DT11DG12_DD 15 0.205 -0.367 31.229 -1.362 0.901 3.635 37.125 C C 18 19 -1.861 D D 11 10 3.604 -1.184 0.462 -0.527 CC_DA18DG19:DC10DT11_DD 16 1.731 -2.720 37.068 -0.653 -0.469 3.173 30.418 C C 19 20 -1.654 D D 10 9 3.163 -0.868 -0.674 -0.637 CC_DG19DT20:DA9DC10_DD 17 0.304 -0.579 30.405 -1.046 1.344 3.626 35.017 C C 20 21 11.288 D D 9 8 3.502 6.734 0.793 0.607 CC_DT20DG21:DC8DA9_DD 18 4.582 -7.681 34.086 -0.112 -0.556 3.245 35.833 C C 21 22 3.907 D D 8 7 3.114 2.389 -0.839 0.559 CC_DG21DG22:DC7DC8_DD 19 -6.833 11.177 35.118 0.572 0.400 3.312 40.483 C C 22 23 4.538 D D 7 6 3.269 3.136 -0.823 0.149 CC_DG22DA23:DT6DC7_DD 20 -2.369 3.429 40.300 -0.139 0.923 2.903 33.677 C C 23 24 2.024 D D 6 5 2.979 1.170 0.487 -0.188 CC_DA23DC24:DG5DT6_DD 21 -3.661 6.331 33.464 -0.497 -1.378 3.418 31.897 C C 24 25 -3.162 D D 5 4 3.478 -1.736 -0.006 0.890 CC_DC24DA25:DT4DG5_DD 22 2.115 -3.853 31.782 1.953 0.418 3.026 35.149 C C 25 26 12.240 D D 4 3 3.118 7.317 -0.074 -0.041 CC_DA25DG26:DC3DT4_DD 23 -4.948 8.276 34.055 -1.111 -0.583 3.652 39.232 C C 26 27 -5.451 D D 3 2 3.607 -3.653 -0.303 -0.542 CC_DG26DC27:DG2DC3_DD 24 -2.392 3.569 38.998 -0.322 0.133 2.678 39.175 C C 27 28 21.275 D D 2 1 3.111 13.908 -0.661 -0.268 CC_DC27DT28:DA1DG2_DD 25 6.604 -10.102 36.132 -1.939 1.717 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_validate_polymer_linkage struct_ref_seq_dif struct_site repository Initial release Database references Database references Non-polymer description Advisory Data collection Database references Derived calculations Refinement description 1 0 2012-09-19 1 1 2012-10-17 1 2 2012-11-21 1 3 2014-07-09 1 4 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-06-19 REL REL HMU 5-HYDROXYMETHYL URACIL HOH water DNA oligonucleotide synthesis sample DNA oligonucleotide synthesis sample 2RBA PDB ENTRY 2RBA PDB experimental model HMU 17 4 HMU HMU 401 A HOH 1 5 HOH HOH 501 A HOH 2 5 HOH HOH 502 A HOH 4 5 HOH HOH 503 A HOH 6 5 HOH HOH 504 A HOH 7 5 HOH HOH 505 A HOH 9 5 HOH HOH 506 A HOH 10 5 HOH HOH 507 A HOH 11 5 HOH HOH 508 A HOH 12 5 HOH HOH 509 A HOH 13 5 HOH HOH 510 A HOH 14 5 HOH HOH 511 A HOH 15 5 HOH HOH 512 A HOH 16 5 HOH HOH 513 A HOH 17 5 HOH HOH 514 A HOH 18 5 HOH HOH 515 A HOH 19 5 HOH HOH 516 A HOH 20 5 HOH HOH 517 A HOH 21 5 HOH HOH 518 A HOH 22 5 HOH HOH 519 A HOH 23 5 HOH HOH 520 A HOH 25 5 HOH HOH 521 A HOH 26 5 HOH HOH 522 A HOH 27 5 HOH HOH 523 A HOH 29 5 HOH HOH 524 A HOH 33 5 HOH HOH 525 A HOH 34 5 HOH HOH 526 A HOH 35 5 HOH HOH 527 A HOH 36 5 HOH HOH 528 A HOH 37 5 HOH HOH 529 A HOH 38 5 HOH HOH 530 A HOH 39 5 HOH HOH 531 A HOH 40 5 HOH HOH 532 A HOH 8 5 HOH HOH 101 C HOH 42 5 HOH HOH 102 C HOH 3 5 HOH HOH 101 D HOH 5 5 HOH HOH 102 D HOH 24 5 HOH HOH 103 D HOH 41 5 HOH HOH 104 D n 1 105 A n 2 106 A n 3 107 A n 4 108 A n 5 109 A SER 110 n 6 SER 110 A PHE 111 n 7 PHE 111 A ASN 112 n 8 ASN 112 A GLY 113 n 9 GLY 113 A VAL 114 n 10 VAL 114 A SER 115 n 11 SER 115 A ALA 116 n 12 GLU 116 A ALA 117 n 13 ALA 117 A ALA 118 n 14 GLU 118 A LEU 119 n 15 LEU 119 A LEU 120 n 16 LEU 120 A THR 121 n 17 THR 121 A LYS 122 n 18 LYS 122 A THR 123 n 19 THR 123 A LEU 124 n 20 LEU 124 A PRO 125 n 21 PRO 125 A ASP 126 n 22 ASP 126 A ILE 127 n 23 ILE 127 A LEU 128 n 24 LEU 128 A THR 129 n 25 THR 129 A PHE 130 n 26 PHE 130 A ASN 131 n 27 ASN 131 A LEU 132 n 28 LEU 132 A ASP 133 n 29 ASP 133 A ILE 134 n 30 ILE 134 A VAL 135 n 31 VAL 135 A ILE 136 n 32 ILE 136 A ILE 137 n 33 ILE 137 A GLY 138 n 34 GLY 138 A ILE 139 n 35 ILE 139 A ASN 140 n 36 ASN 140 A PRO 141 n 37 PRO 141 A GLY 142 n 38 GLY 142 A LEU 143 n 39 LEU 143 A MET 144 n 40 MET 144 A ALA 145 n 41 ALA 145 A ALA 146 n 42 ALA 146 A TYR 147 n 43 TYR 147 A LYS 148 n 44 LYS 148 A GLY 149 n 45 GLY 149 A HIS 150 n 46 HIS 150 A HIS 151 n 47 HIS 151 A TYR 152 n 48 TYR 152 A PRO 153 n 49 PRO 153 A GLY 154 n 50 GLY 154 A PRO 155 n 51 PRO 155 A GLY 156 n 52 GLY 156 A ASN 157 n 53 ASN 157 A HIS 158 n 54 HIS 158 A PHE 159 n 55 PHE 159 A TRP 160 n 56 TRP 160 A LYS 161 n 57 LYS 161 A CYS 162 n 58 CYS 162 A LEU 163 n 59 LEU 163 A PHE 164 n 60 PHE 164 A MET 165 n 61 MET 165 A SER 166 n 62 SER 166 A GLY 167 n 63 GLY 167 A LEU 168 n 64 LEU 168 A SER 169 n 65 SER 169 A GLU 170 n 66 GLU 170 A VAL 171 n 67 VAL 171 A GLN 172 n 68 GLN 172 A LEU 173 n 69 LEU 173 A ASN 174 n 70 ASN 174 A HIS 175 n 71 HIS 175 A MET 176 n 72 MET 176 A ASP 177 n 73 ASP 177 A ASP 178 n 74 ASP 178 A HIS 179 n 75 HIS 179 A THR 180 n 76 THR 180 A LEU 181 n 77 LEU 181 A PRO 182 n 78 PRO 182 A GLY 183 n 79 GLY 183 A LYS 184 n 80 LYS 184 A TYR 185 n 81 TYR 185 A GLY 186 n 82 GLY 186 A ILE 187 n 83 ILE 187 A GLY 188 n 84 GLY 188 A PHE 189 n 85 PHE 189 A THR 190 n 86 THR 190 A ASN 191 n 87 ASN 191 A MET 192 n 88 MET 192 A VAL 193 n 89 VAL 193 A GLU 194 n 90 GLU 194 A ARG 195 n 91 ARG 195 A THR 196 n 92 THR 196 A THR 197 n 93 THR 197 A PRO 198 n 94 PRO 198 A GLY 199 n 95 GLY 199 A SER 200 n 96 SER 200 A LYS 201 n 97 LYS 201 A ASP 202 n 98 ASP 202 A LEU 203 n 99 LEU 203 A SER 204 n 100 SER 204 A SER 205 n 101 SER 205 A LYS 206 n 102 LYS 206 A GLU 207 n 103 GLU 207 A PHE 208 n 104 PHE 208 A ARG 209 n 105 ARG 209 A GLU 210 n 106 GLU 210 A GLY 211 n 107 GLY 211 A GLY 212 n 108 GLY 212 A ARG 213 n 109 ARG 213 A ILE 214 n 110 ILE 214 A LEU 215 n 111 LEU 215 A VAL 216 n 112 VAL 216 A GLN 217 n 113 GLN 217 A LYS 218 n 114 LYS 218 A LEU 219 n 115 LEU 219 A GLN 220 n 116 GLN 220 A LYS 221 n 117 LYS 221 A TYR 222 n 118 TYR 222 A GLN 223 n 119 GLN 223 A PRO 224 n 120 PRO 224 A ARG 225 n 121 ARG 225 A ILE 226 n 122 ILE 226 A ALA 227 n 123 ALA 227 A VAL 228 n 124 VAL 228 A PHE 229 n 125 PHE 229 A ASN 230 n 126 ASN 230 A GLY 231 n 127 GLY 231 A LYS 232 n 128 LYS 232 A CYS 233 n 129 CYS 233 A ILE 234 n 130 ILE 234 A TYR 235 n 131 TYR 235 A GLU 236 n 132 GLU 236 A ILE 237 n 133 ILE 237 A PHE 238 n 134 PHE 238 A SER 239 n 135 SER 239 A LYS 240 n 136 LYS 240 A GLU 241 n 137 GLU 241 A VAL 242 n 138 VAL 242 A PHE 243 n 139 PHE 243 A GLY 244 n 140 GLY 244 A VAL 245 n 141 VAL 245 A LYS 246 n 142 LYS 246 A VAL 247 n 143 VAL 247 A LYS 248 n 144 LYS 248 A ASN 249 n 145 ASN 249 A LEU 250 n 146 LEU 250 A GLU 251 n 147 GLU 251 A PHE 252 n 148 PHE 252 A GLY 253 n 149 GLY 253 A LEU 254 n 150 LEU 254 A GLN 255 n 151 GLN 255 A PRO 256 n 152 PRO 256 A HIS 257 n 153 HIS 257 A LYS 258 n 154 LYS 258 A ILE 259 n 155 ILE 259 A PRO 260 n 156 PRO 260 A ASP 261 n 157 ASP 261 A THR 262 n 158 THR 262 A GLU 263 n 159 GLU 263 A THR 264 n 160 THR 264 A LEU 265 n 161 LEU 265 A CYS 266 n 162 CYS 266 A TYR 267 n 163 TYR 267 A VAL 268 n 164 VAL 268 A MET 269 n 165 MET 269 A PRO 270 n 166 PRO 270 A SER 271 n 167 SER 271 A SER 272 n 168 SER 272 A SER 273 n 169 SER 273 A ALA 274 n 170 ALA 274 A ARG 275 n 171 ARG 275 A CYS 276 n 172 CYS 276 A ALA 277 n 173 ALA 277 A GLN 278 n 174 GLN 278 A PHE 279 n 175 PHE 279 A PRO 280 n 176 PRO 280 A ARG 281 n 177 ARG 281 A ALA 282 n 178 ALA 282 A GLN 283 n 179 GLN 283 A ASP 284 n 180 ASP 284 A LYS 285 n 181 LYS 285 A VAL 286 n 182 VAL 286 A HIS 287 n 183 HIS 287 A TYR 288 n 184 TYR 288 A TYR 289 n 185 TYR 289 A ILE 290 n 186 ILE 290 A LYS 291 n 187 LYS 291 A LEU 292 n 188 LEU 292 A LYS 293 n 189 LYS 293 A ASP 294 n 190 ASP 294 A LEU 295 n 191 LEU 295 A ARG 296 n 192 ARG 296 A ASP 297 n 193 ASP 297 A GLN 298 n 194 GLN 298 A LEU 299 n 195 LEU 299 A LYS 300 n 196 LYS 300 A GLY 301 n 197 GLY 301 A ALA 302 n 198 ILE 302 A GLU 303 n 199 GLU 303 A ARG 304 n 200 ARG 304 A ALA 305 n 201 ASN 305 A n 202 306 A n 203 307 A n 204 308 A DC 1 n 1 DC 1 C DA 2 n 2 DA 2 C DG 3 n 3 DG 3 C DC 4 n 4 DC 4 C DT 5 n 5 DT 5 C DC 6 n 6 DC 6 C DT 7 n 7 DT 7 C DG 8 n 8 DG 8 C DT 9 n 9 DT 9 C DA 10 n 10 DA 10 C DC 11 n 11 DC 11 C DG 12 n 12 DG 12 C DT 13 n 13 DT 13 C DG 14 n 14 DG 14 C DA 15 n 15 DA 15 C DG 16 n 16 DG 16 C DC 17 n 17 DC 17 C DA 18 n 18 DA 18 C DG 19 n 19 DG 19 C DT 20 n 20 DT 20 C DG 21 n 21 DG 21 C DG 22 n 22 DG 22 C DA 23 n 23 DA 23 C DC 24 n 24 DC 24 C DA 25 n 25 DA 25 C DG 26 n 26 DG 26 C DC 27 n 27 DC 27 C DT 28 n 28 DT 28 C DA 1 n 1 DA 1 D DG 2 n 2 DG 2 D DC 3 n 3 DC 3 D DT 4 n 4 DT 4 D DG 5 n 5 DG 5 D DT 6 n 6 DT 6 D DC 7 n 7 DC 7 D DC 8 n 8 DC 8 D DA 9 n 9 DA 9 D DC 10 n 10 DC 10 D DT 11 n 11 DT 11 D DG 12 n 12 DG 12 D DC 13 n 13 DC 13 D DT 14 n 14 DT 14 D DC 15 n 15 DC 15 D DA 16 n 16 DA 16 D AAB 17 n 17 AAB 17 D DG 18 n 18 DG 18 D DT 19 n 19 DT 19 D DA 20 n 20 DA 20 D DC 21 n 21 DC 21 D DA 22 n 22 DA 22 D DG 23 n 23 DG 23 D DA 24 n 24 DA 24 D DG 25 n 25 DG 25 D DC 26 n 26 DC 26 D DT 27 n 27 DT 27 D DG 28 n 28 DG 28 D DT 29 n 29 DT 29 D author_and_software_defined_assembly PISA 3 trimeric 5320 -23 17860 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 188 A O GLY 84 A N ILE 134 A N ILE 30 A N ILE 137 A N ILE 33 A O VAL 228 A O VAL 124 A N ALA 227 A N ALA 123 A O LEU 265 A O LEU 161 A O VAL 268 A O VAL 164 A N GLY 253 A N GLY 149 1 A CG GLU 116 A CG GLU 12 1 Y 1 A CD GLU 116 A CD GLU 12 1 Y 1 A OE1 GLU 116 A OE1 GLU 12 1 Y 1 A OE2 GLU 116 A OE2 GLU 12 1 Y 1 A CG GLU 118 A CG GLU 14 1 Y 1 A CD GLU 118 A CD GLU 14 1 Y 1 A OE1 GLU 118 A OE1 GLU 14 1 Y 1 A OE2 GLU 118 A OE2 GLU 14 1 Y 1 A CG LYS 161 A CG LYS 57 1 Y 1 A CD LYS 161 A CD LYS 57 1 Y 1 A CE LYS 161 A CE LYS 57 1 Y 1 A NZ LYS 161 A NZ LYS 57 1 Y 1 A CG GLU 194 A CG GLU 90 1 Y 1 A CD GLU 194 A CD GLU 90 1 Y 1 A OE1 GLU 194 A OE1 GLU 90 1 Y 1 A OE2 GLU 194 A OE2 GLU 90 1 Y 1 A CG LYS 206 A CG LYS 102 1 Y 1 A CD LYS 206 A CD LYS 102 1 Y 1 A CE LYS 206 A CE LYS 102 1 Y 1 A NZ LYS 206 A NZ LYS 102 1 Y 1 A CG LYS 246 A CG LYS 142 1 Y 1 A CD LYS 246 A CD LYS 142 1 Y 1 A CE LYS 246 A CE LYS 142 1 Y 1 A NZ LYS 246 A NZ LYS 142 1 Y 1 A CG LYS 248 A CG LYS 144 1 Y 1 A CD LYS 248 A CD LYS 144 1 Y 1 A CE LYS 248 A CE LYS 144 1 Y 1 A NZ LYS 248 A NZ LYS 144 1 Y 1 A CG GLN 298 A CG GLN 194 1 Y 1 A CD GLN 298 A CD GLN 194 1 Y 1 A OE1 GLN 298 A OE1 GLN 194 1 Y 1 A NE2 GLN 298 A NE2 GLN 194 1 Y 1 A CG1 ILE 302 A CG1 ILE 198 1 Y 1 A CG2 ILE 302 A CG2 ILE 198 1 Y 1 A CD1 ILE 302 A CD1 ILE 198 1 Y 1 A CG ASN 305 A CG ASN 201 1 Y 1 A OD1 ASN 305 A OD1 ASN 201 1 Y 1 A ND2 ASN 305 A ND2 ASN 201 1 Y 1 D O2P AAB 17 C O2P AAB 17 1 Y 1 D C5' DT 29 C C5' DT 29 1 Y 1 D C4' DT 29 C C4' DT 29 1 Y 1 D O4' DT 29 C O4' DT 29 1 Y 1 D C3' DT 29 C C3' DT 29 1 Y 1 D O3' DT 29 C O3' DT 29 1 Y 1 D C2' DT 29 C C2' DT 29 1 Y 1 D C1' DT 29 C C1' DT 29 1 Y 1 D N1 DT 29 C N1 DT 29 1 Y 1 D C2 DT 29 C C2 DT 29 1 Y 1 D O2 DT 29 C O2 DT 29 1 Y 1 D N3 DT 29 C N3 DT 29 1 Y 1 D C4 DT 29 C C4 DT 29 1 Y 1 D O4 DT 29 C O4 DT 29 1 Y 1 D C5 DT 29 C C5 DT 29 1 Y 1 D C7 DT 29 C C7 DT 29 1 Y 1 D C6 DT 29 C C6 DT 29 1 Y 1 A GLY 105 A GLY 1 1 Y 1 A SER 106 A SER 2 1 Y 1 A HIS 107 A HIS 3 1 Y 1 A MET 108 A MET 4 1 Y 1 A ALA 109 A ALA 5 1 Y 1 A MET 306 A MET 202 1 Y 1 A ASP 307 A ASP 203 1 Y 1 A VAL 308 A VAL 204 1 Y 1 D D O3' C1' DA AAB 16 17 6.35 1 D D C1' P AAB DG 17 18 4.19 1 3.11 0.30 108.30 111.41 C C C O4' C1' N9 DG DG DG 3 3 3 N 1 2.62 0.30 108.30 110.92 D D D O4' C1' N1 DT DT DT 14 14 14 N 1 2.66 0.30 108.30 110.96 D D D O4' C1' N1 DC DC DC 15 15 15 N 1 2.33 0.30 108.30 110.63 D D D O4' C1' N1 DC DC DC 21 21 21 N 1 A GLU 170 48.83 -3.46 1 A SER 200 57.03 -95.36 1 A LYS 221 -97.21 -63.51 1 A GLN 223 33.67 81.57 1 A ASN 249 -106.40 77.59 25.2992 -0.0000 16.1207 -10.7805 0.0000 -14.5187 0.2665 0.2239 0.2259 2.493 39.161 680 13673 4.97 98.73 0.86 random 1 THROUGHOUT 1.34 MOLECULAR REPLACEMENT 32.14 0.90 1.11 PDB ENTRY 2RBA ML FLAT BULK SOLVENT MODEL 39.807 0.321 2.493 39.161 38 2712 10 1139 1525 0.003 2851 0.863 4097 23.614 1126 0.056 453 0.003 329 0.4923 0.3840 2.6854 119 2476 95.00 0.3920 0.3314 2.9556 153 2583 100.00 0.3172 0.2307 3.3831 143 2596 100.00 0.2367 0.2169 4.2615 123 2644 100.00 0.2158 0.1853 39.1656 142 2694 100.00 58.71 2.49 39.161 4FNC 13702 -3.0 0.081 1 25.3 10.2 99.1 0.630 2.49 2.58 2.9 1282 1 8.5 93.6 data collection HKL-2000 model building PHENIX refinement PHENIX (phenix.refine: 1.7.2_869) data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX Human TDG in a post-reactive complex with 5-hydroxymethyluracil (5hmU) 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A SER 115 A SER 11 HELX_P A LYS 122 A LYS 18 1 1 8 A GLY 142 A GLY 38 HELX_P A GLY 149 A GLY 45 1 2 8 A HIS 158 A HIS 54 HELX_P A SER 166 A SER 62 1 3 9 A ASN 174 A ASN 70 HELX_P A HIS 179 A HIS 75 5 4 6 A THR 180 A THR 76 HELX_P A TYR 185 A TYR 81 1 5 6 A GLY 199 A GLY 95 HELX_P A LEU 203 A LEU 99 5 6 5 A SER 204 A SER 100 HELX_P A GLN 223 A GLN 119 1 7 20 A GLY 231 A GLY 127 HELX_P A PHE 243 A PHE 139 1 8 13 A ARG 281 A ARG 177 HELX_P A ASN 305 A ASN 201 1 9 25 hydrog WATSON-CRICK C DC 1 B N3 DC 1 1_555 D DG 28 C N1 DG 28 1_555 hydrog WATSON-CRICK C DC 1 B N4 DC 1 1_555 D DG 28 C O6 DG 28 1_555 hydrog WATSON-CRICK C DC 1 B O2 DC 1 1_555 D DG 28 C N2 DG 28 1_555 hydrog WATSON-CRICK C DA 2 B N1 DA 2 1_555 D DT 27 C N3 DT 27 1_555 hydrog WATSON-CRICK C DA 2 B N6 DA 2 1_555 D DT 27 C O4 DT 27 1_555 hydrog WATSON-CRICK C DG 3 B N1 DG 3 1_555 D DC 26 C N3 DC 26 1_555 hydrog WATSON-CRICK C DG 3 B N2 DG 3 1_555 D DC 26 C O2 DC 26 1_555 hydrog WATSON-CRICK C DG 3 B O6 DG 3 1_555 D DC 26 C N4 DC 26 1_555 hydrog WATSON-CRICK C DC 4 B N3 DC 4 1_555 D DG 25 C N1 DG 25 1_555 hydrog WATSON-CRICK C DC 4 B N4 DC 4 1_555 D DG 25 C O6 DG 25 1_555 hydrog WATSON-CRICK C DC 4 B O2 DC 4 1_555 D DG 25 C N2 DG 25 1_555 hydrog WATSON-CRICK C DT 5 B N3 DT 5 1_555 D DA 24 C N1 DA 24 1_555 hydrog WATSON-CRICK C DT 5 B O4 DT 5 1_555 D DA 24 C N6 DA 24 1_555 hydrog WATSON-CRICK C DC 6 B N3 DC 6 1_555 D DG 23 C N1 DG 23 1_555 hydrog WATSON-CRICK C DC 6 B N4 DC 6 1_555 D DG 23 C O6 DG 23 1_555 hydrog WATSON-CRICK C DC 6 B O2 DC 6 1_555 D DG 23 C N2 DG 23 1_555 hydrog WATSON-CRICK C DT 7 B N3 DT 7 1_555 D DA 22 C N1 DA 22 1_555 hydrog WATSON-CRICK C DT 7 B O4 DT 7 1_555 D DA 22 C N6 DA 22 1_555 hydrog WATSON-CRICK C DG 8 B N1 DG 8 1_555 D DC 21 C N3 DC 21 1_555 hydrog WATSON-CRICK C DG 8 B N2 DG 8 1_555 D DC 21 C O2 DC 21 1_555 hydrog WATSON-CRICK C DG 8 B O6 DG 8 1_555 D DC 21 C N4 DC 21 1_555 hydrog WATSON-CRICK C DT 9 B N3 DT 9 1_555 D DA 20 C N1 DA 20 1_555 hydrog WATSON-CRICK C DT 9 B O4 DT 9 1_555 D DA 20 C N6 DA 20 1_555 hydrog WATSON-CRICK C DA 10 B N1 DA 10 1_555 D DT 19 C N3 DT 19 1_555 hydrog WATSON-CRICK C DA 10 B N6 DA 10 1_555 D DT 19 C O4 DT 19 1_555 hydrog WATSON-CRICK C DC 11 B N3 DC 11 1_555 D DG 18 C N1 DG 18 1_555 hydrog WATSON-CRICK C DC 11 B N4 DC 11 1_555 D DG 18 C O6 DG 18 1_555 hydrog WATSON-CRICK C DC 11 B O2 DC 11 1_555 D DG 18 C N2 DG 18 1_555 hydrog WATSON-CRICK C DT 13 B N3 DT 13 1_555 D DA 16 C N1 DA 16 1_555 hydrog WATSON-CRICK C DT 13 B O4 DT 13 1_555 D DA 16 C N6 DA 16 1_555 hydrog WATSON-CRICK C DG 14 B N1 DG 14 1_555 D DC 15 C N3 DC 15 1_555 hydrog WATSON-CRICK C DG 14 B N2 DG 14 1_555 D DC 15 C O2 DC 15 1_555 hydrog WATSON-CRICK C DG 14 B O6 DG 14 1_555 D DC 15 C N4 DC 15 1_555 hydrog WATSON-CRICK C DA 15 B N1 DA 15 1_555 D DT 14 C N3 DT 14 1_555 hydrog WATSON-CRICK C DA 15 B N6 DA 15 1_555 D DT 14 C O4 DT 14 1_555 hydrog WATSON-CRICK C DG 16 B N1 DG 16 1_555 D DC 13 C N3 DC 13 1_555 hydrog WATSON-CRICK C DG 16 B N2 DG 16 1_555 D DC 13 C O2 DC 13 1_555 hydrog WATSON-CRICK C DG 16 B O6 DG 16 1_555 D DC 13 C N4 DC 13 1_555 hydrog DC-DT MISPAIR C DC 17 B N4 DC 17 1_555 D DT 11 C O4 DT 11 1_555 hydrog WATSON-CRICK C DC 17 B N3 DC 17 1_555 D DG 12 C N1 DG 12 1_555 hydrog WATSON-CRICK C DC 17 B N4 DC 17 1_555 D DG 12 C O6 DG 12 1_555 hydrog WATSON-CRICK C DC 17 B O2 DC 17 1_555 D DG 12 C N2 DG 12 1_555 hydrog WATSON-CRICK C DA 18 B N1 DA 18 1_555 D DT 11 C N3 DT 11 1_555 hydrog WATSON-CRICK C DA 18 B N6 DA 18 1_555 D DT 11 C O4 DT 11 1_555 hydrog WATSON-CRICK C DG 19 B N1 DG 19 1_555 D DC 10 C N3 DC 10 1_555 hydrog WATSON-CRICK C DG 19 B N2 DG 19 1_555 D DC 10 C O2 DC 10 1_555 hydrog WATSON-CRICK C DG 19 B O6 DG 19 1_555 D DC 10 C N4 DC 10 1_555 hydrog WATSON-CRICK C DT 20 B N3 DT 20 1_555 D DA 9 C N1 DA 9 1_555 hydrog WATSON-CRICK C DT 20 B O4 DT 20 1_555 D DA 9 C N6 DA 9 1_555 hydrog WATSON-CRICK C DG 21 B N1 DG 21 1_555 D DC 8 C N3 DC 8 1_555 hydrog WATSON-CRICK C DG 21 B N2 DG 21 1_555 D DC 8 C O2 DC 8 1_555 hydrog WATSON-CRICK C DG 21 B O6 DG 21 1_555 D DC 8 C N4 DC 8 1_555 hydrog WATSON-CRICK C DG 22 B N1 DG 22 1_555 D DC 7 C N3 DC 7 1_555 hydrog WATSON-CRICK C DG 22 B N2 DG 22 1_555 D DC 7 C O2 DC 7 1_555 hydrog WATSON-CRICK C DG 22 B O6 DG 22 1_555 D DC 7 C N4 DC 7 1_555 hydrog WATSON-CRICK C DA 23 B N1 DA 23 1_555 D DT 6 C N3 DT 6 1_555 hydrog WATSON-CRICK C DA 23 B N6 DA 23 1_555 D DT 6 C O4 DT 6 1_555 hydrog WATSON-CRICK C DC 24 B N3 DC 24 1_555 D DG 5 C N1 DG 5 1_555 hydrog WATSON-CRICK C DC 24 B N4 DC 24 1_555 D DG 5 C O6 DG 5 1_555 hydrog WATSON-CRICK C DC 24 B O2 DC 24 1_555 D DG 5 C N2 DG 5 1_555 hydrog WATSON-CRICK C DA 25 B N1 DA 25 1_555 D DT 4 C N3 DT 4 1_555 hydrog WATSON-CRICK C DA 25 B N6 DA 25 1_555 D DT 4 C O4 DT 4 1_555 hydrog DG-DC PAIR C DG 26 B N1 DG 26 1_555 D DC 3 C O2 DC 3 1_555 hydrog DC-DA MISPAIR C DC 27 B N3 DC 27 1_555 D DA 1 C N6 DA 1 1_555 hydrog WATSON-CRICK C DC 27 B N3 DC 27 1_555 D DG 2 C N1 DG 2 1_555 hydrog WATSON-CRICK C DC 27 B N4 DC 27 1_555 D DG 2 C O6 DG 2 1_555 hydrog WATSON-CRICK C DC 27 B O2 DC 27 1_555 D DG 2 C N2 DG 2 1_555 hydrog WATSON-CRICK C DT 28 B N3 DT 28 1_555 D DA 1 C N1 DA 1 1_555 hydrog WATSON-CRICK C DT 28 B O4 DT 28 1_555 D DA 1 C N6 DA 1 1_555 HYDROLASE/DNA base excision repair, HYDROLASE-DNA complex TDG_HUMAN UNP 1 111 Q13569 FNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFT NMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMP SSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV 4FNC PDB 2 4FNC CAGCTCTGTACGTGAGCAGTGGACAGCT 4FNC PDB 3 4FNC AGCTGTCCACTGCTCAXGTACAGAGCTGT 111 308 4FNC 111 308 Q13569 A 1 7 204 1 28 4FNC 1 28 4FNC C 2 1 28 1 29 4FNC 1 29 4FNC D 3 1 29 1 expression tag GLY 105 4FNC A Q13569 UNP 1 1 expression tag SER 106 4FNC A Q13569 UNP 2 1 expression tag HIS 107 4FNC A Q13569 UNP 3 1 expression tag MET 108 4FNC A Q13569 UNP 4 1 expression tag ALA 109 4FNC A Q13569 UNP 5 1 expression tag SER 110 4FNC A Q13569 UNP 6 5 parallel parallel parallel anti-parallel A ILE 187 A ILE 83 A ASN 191 A ASN 87 A ILE 134 A ILE 30 A GLY 138 A GLY 34 A ILE 226 A ILE 122 A ASN 230 A ASN 126 A LEU 265 A LEU 161 A MET 269 A MET 165 A GLY 253 A GLY 149 A LEU 254 A LEU 150 BINDING SITE FOR RESIDUE HMU A 401 A HMU 401 Software 9 A GLY 138 A GLY 34 9 1_555 A ILE 139 A ILE 35 9 1_555 A ASN 140 A ASN 36 9 1_555 A TYR 152 A TYR 48 9 1_555 A ASN 157 A ASN 53 9 1_555 A ASN 230 A ASN 126 9 1_555 A SER 271 A SER 167 9 1_555 A HOH 529 E HOH 9 1_555 D AAB 17 C AAB 17 9 1_555 5 C 1 2 1