0.015119
0.000000
0.000000
0.000000
0.011796
0.000000
0.000000
0.000000
0.021280
0.00000
0.00000
0.00000
Farah, C.S.
Guzzo, C.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
66.142
84.771
46.992
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C20 H24 N10 O14 P2
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
c-di-GMP; Cyclic diguanosine monophosphate
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
P
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
C
N
102
R
C
N
103
N
O
N
104
S
C
N
105
N
O
N
106
R
C
N
107
N
O
N
108
R
C
Y
109
N
N
Y
110
N
C
Y
111
N
N
Y
112
N
C
N
113
N
C
N
114
N
O
N
115
N
N
N
116
N
C
N
117
N
N
N
118
N
N
Y
119
N
C
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
S
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
N
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
O
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
Y
212
N
C
Y
213
N
N
Y
214
N
C
Y
215
N
C
Y
216
N
N
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
S
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
N
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
C
N
306
N
S
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
R
C
N
379
N
O
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
N
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
N
429
N
O
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
N
N
443
S
C
N
444
N
C
N
445
N
O
N
446
N
C
N
447
N
C
N
448
N
C
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
sing
Y
85
N
sing
Y
86
N
doub
Y
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
Y
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
sing
Y
111
N
doub
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
sing
Y
217
N
doub
Y
218
N
doub
N
219
N
sing
Y
220
N
sing
N
221
N
sing
Y
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
2174
2197
10.1016/j.jmb.2013.03.021
23507310
Structure of the PilZ-FimXEAL-c-di-GMP Complex Responsible for the Regulation of Bacterial Type IV Pilus Biogenesis.
2013
10.2210/pdb4foj/pdb
pdb_00004foj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-11-24
MARMOSAIC 225 mm CCD
double flat crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.24
1.0
W01B-MX2
LNLS
1.24
SYNCHROTRON
LNLS BEAMLINE W01B-MX2
29612.451
FimX
EAL domain (UNP residues 426-689)
1
man
polymer
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
1
syn
non-polymer
18.015
water
313
nat
water
no
no
VSIYDPAAADRAEEERIERWVEQLREALVGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLVT
EIDRWVVARAIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLAA
VSAMDCKVGLEQFGSGLDSFQLLAHFHPAFLKLDRGITGDIASARDSQEKIREITSRAQPAGILTMAEFVADAQSMSSFF
SAGVDYVQGDFVAPTGPLMNYEFG
VSIYDPAAADRAEEERIERWVEQLREALVGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLVT
EIDRWVVARAIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLAA
VSAMDCKVGLEQFGSGLDSFQLLAHFHPAFLKLDRGITGDIASARDSQEKIREITSRAQPAGILTMAEFVADAQSMSSFF
SAGVDYVQGDFVAPTGPLMNYEFG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
306
sample
XAC2398
190486
Xanthomonas axonopodis pv. citri
469008
Escherichia coli
BL21(DE3)pLysS
plasmid
pET3a
1
2.22
44.70
VAPOR DIFFUSION, SITTING DROP
4.7
0.6 M ammonium sulfate, 0.1 M sodium citrate, pH 4.7, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Structure summary
1
0
2013-03-27
1
1
2013-04-03
1
2
2013-06-12
1
3
2024-02-28
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Xanthomonas axonopodis pv citri PilZ (XAC1133)
1.8 A crystal structure of the FimX EAL domain in complex with c-diGMP
2.1 A crystal structure of PilZ-FimX(EAL domain) in complex with c-diGMP
RCSB
Y
RCSB
2012-06-20
REL
REL
C2E
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
HOH
water
C2E
1
2
C2E
C2E
701
A
HOH
1
3
HOH
HOH
801
A
HOH
2
3
HOH
HOH
802
A
HOH
3
3
HOH
HOH
803
A
HOH
4
3
HOH
HOH
804
A
HOH
5
3
HOH
HOH
805
A
HOH
6
3
HOH
HOH
806
A
HOH
7
3
HOH
HOH
807
A
HOH
8
3
HOH
HOH
808
A
HOH
9
3
HOH
HOH
809
A
HOH
11
3
HOH
HOH
810
A
HOH
12
3
HOH
HOH
811
A
HOH
13
3
HOH
HOH
812
A
HOH
14
3
HOH
HOH
813
A
HOH
15
3
HOH
HOH
814
A
HOH
16
3
HOH
HOH
815
A
HOH
17
3
HOH
HOH
816
A
HOH
18
3
HOH
HOH
817
A
HOH
19
3
HOH
HOH
818
A
HOH
20
3
HOH
HOH
819
A
HOH
21
3
HOH
HOH
820
A
HOH
22
3
HOH
HOH
821
A
HOH
23
3
HOH
HOH
822
A
HOH
24
3
HOH
HOH
823
A
HOH
25
3
HOH
HOH
824
A
HOH
26
3
HOH
HOH
825
A
HOH
27
3
HOH
HOH
826
A
HOH
28
3
HOH
HOH
827
A
HOH
29
3
HOH
HOH
828
A
HOH
30
3
HOH
HOH
829
A
HOH
31
3
HOH
HOH
830
A
HOH
32
3
HOH
HOH
831
A
HOH
33
3
HOH
HOH
832
A
HOH
34
3
HOH
HOH
833
A
HOH
35
3
HOH
HOH
834
A
HOH
36
3
HOH
HOH
835
A
HOH
37
3
HOH
HOH
836
A
HOH
38
3
HOH
HOH
837
A
HOH
40
3
HOH
HOH
838
A
HOH
41
3
HOH
HOH
839
A
HOH
42
3
HOH
HOH
840
A
HOH
43
3
HOH
HOH
841
A
HOH
44
3
HOH
HOH
842
A
HOH
45
3
HOH
HOH
843
A
HOH
46
3
HOH
HOH
844
A
HOH
47
3
HOH
HOH
845
A
HOH
48
3
HOH
HOH
846
A
HOH
49
3
HOH
HOH
847
A
HOH
50
3
HOH
HOH
848
A
HOH
51
3
HOH
HOH
849
A
HOH
52
3
HOH
HOH
850
A
HOH
53
3
HOH
HOH
851
A
HOH
55
3
HOH
HOH
852
A
HOH
56
3
HOH
HOH
853
A
HOH
57
3
HOH
HOH
854
A
HOH
58
3
HOH
HOH
855
A
HOH
59
3
HOH
HOH
856
A
HOH
60
3
HOH
HOH
857
A
HOH
61
3
HOH
HOH
858
A
HOH
62
3
HOH
HOH
859
A
HOH
63
3
HOH
HOH
860
A
HOH
64
3
HOH
HOH
861
A
HOH
65
3
HOH
HOH
862
A
HOH
66
3
HOH
HOH
863
A
HOH
67
3
HOH
HOH
864
A
HOH
68
3
HOH
HOH
865
A
HOH
69
3
HOH
HOH
866
A
HOH
70
3
HOH
HOH
867
A
HOH
71
3
HOH
HOH
868
A
HOH
72
3
HOH
HOH
869
A
HOH
74
3
HOH
HOH
870
A
HOH
75
3
HOH
HOH
871
A
HOH
76
3
HOH
HOH
872
A
HOH
77
3
HOH
HOH
873
A
HOH
78
3
HOH
HOH
874
A
HOH
79
3
HOH
HOH
875
A
HOH
80
3
HOH
HOH
876
A
HOH
81
3
HOH
HOH
877
A
HOH
82
3
HOH
HOH
878
A
HOH
83
3
HOH
HOH
879
A
HOH
84
3
HOH
HOH
880
A
HOH
85
3
HOH
HOH
881
A
HOH
86
3
HOH
HOH
882
A
HOH
88
3
HOH
HOH
883
A
HOH
91
3
HOH
HOH
884
A
HOH
92
3
HOH
HOH
885
A
HOH
93
3
HOH
HOH
886
A
HOH
94
3
HOH
HOH
887
A
HOH
95
3
HOH
HOH
888
A
HOH
96
3
HOH
HOH
889
A
HOH
97
3
HOH
HOH
890
A
HOH
98
3
HOH
HOH
891
A
HOH
99
3
HOH
HOH
892
A
HOH
100
3
HOH
HOH
893
A
HOH
101
3
HOH
HOH
894
A
HOH
102
3
HOH
HOH
895
A
HOH
103
3
HOH
HOH
896
A
HOH
104
3
HOH
HOH
897
A
HOH
105
3
HOH
HOH
898
A
HOH
107
3
HOH
HOH
899
A
HOH
108
3
HOH
HOH
900
A
HOH
110
3
HOH
HOH
901
A
HOH
111
3
HOH
HOH
902
A
HOH
112
3
HOH
HOH
903
A
HOH
113
3
HOH
HOH
904
A
HOH
114
3
HOH
HOH
905
A
HOH
115
3
HOH
HOH
906
A
HOH
116
3
HOH
HOH
907
A
HOH
117
3
HOH
HOH
908
A
HOH
118
3
HOH
HOH
909
A
HOH
119
3
HOH
HOH
910
A
HOH
120
3
HOH
HOH
911
A
HOH
121
3
HOH
HOH
912
A
HOH
122
3
HOH
HOH
913
A
HOH
123
3
HOH
HOH
914
A
HOH
124
3
HOH
HOH
915
A
HOH
126
3
HOH
HOH
916
A
HOH
127
3
HOH
HOH
917
A
HOH
128
3
HOH
HOH
918
A
HOH
129
3
HOH
HOH
919
A
HOH
130
3
HOH
HOH
920
A
HOH
131
3
HOH
HOH
921
A
HOH
132
3
HOH
HOH
922
A
HOH
133
3
HOH
HOH
923
A
HOH
134
3
HOH
HOH
924
A
HOH
135
3
HOH
HOH
925
A
HOH
136
3
HOH
HOH
926
A
HOH
137
3
HOH
HOH
927
A
HOH
138
3
HOH
HOH
928
A
HOH
139
3
HOH
HOH
929
A
HOH
140
3
HOH
HOH
930
A
HOH
141
3
HOH
HOH
931
A
HOH
142
3
HOH
HOH
932
A
HOH
144
3
HOH
HOH
933
A
HOH
145
3
HOH
HOH
934
A
HOH
147
3
HOH
HOH
935
A
HOH
148
3
HOH
HOH
936
A
HOH
149
3
HOH
HOH
937
A
HOH
150
3
HOH
HOH
938
A
HOH
151
3
HOH
HOH
939
A
HOH
152
3
HOH
HOH
940
A
HOH
153
3
HOH
HOH
941
A
HOH
154
3
HOH
HOH
942
A
HOH
155
3
HOH
HOH
943
A
HOH
156
3
HOH
HOH
944
A
HOH
157
3
HOH
HOH
945
A
HOH
158
3
HOH
HOH
946
A
HOH
159
3
HOH
HOH
947
A
HOH
160
3
HOH
HOH
948
A
HOH
162
3
HOH
HOH
949
A
HOH
165
3
HOH
HOH
950
A
HOH
166
3
HOH
HOH
951
A
HOH
167
3
HOH
HOH
952
A
HOH
168
3
HOH
HOH
953
A
HOH
169
3
HOH
HOH
954
A
HOH
170
3
HOH
HOH
955
A
HOH
171
3
HOH
HOH
956
A
HOH
172
3
HOH
HOH
957
A
HOH
174
3
HOH
HOH
958
A
HOH
175
3
HOH
HOH
959
A
HOH
176
3
HOH
HOH
960
A
HOH
178
3
HOH
HOH
961
A
HOH
179
3
HOH
HOH
962
A
HOH
180
3
HOH
HOH
963
A
HOH
182
3
HOH
HOH
964
A
HOH
183
3
HOH
HOH
965
A
HOH
184
3
HOH
HOH
966
A
HOH
187
3
HOH
HOH
967
A
HOH
188
3
HOH
HOH
968
A
HOH
189
3
HOH
HOH
969
A
HOH
190
3
HOH
HOH
970
A
HOH
191
3
HOH
HOH
971
A
HOH
193
3
HOH
HOH
972
A
HOH
194
3
HOH
HOH
973
A
HOH
195
3
HOH
HOH
974
A
HOH
196
3
HOH
HOH
975
A
HOH
197
3
HOH
HOH
976
A
HOH
198
3
HOH
HOH
977
A
HOH
199
3
HOH
HOH
978
A
HOH
200
3
HOH
HOH
979
A
HOH
201
3
HOH
HOH
980
A
HOH
203
3
HOH
HOH
981
A
HOH
204
3
HOH
HOH
982
A
HOH
206
3
HOH
HOH
983
A
HOH
207
3
HOH
HOH
984
A
HOH
208
3
HOH
HOH
985
A
HOH
210
3
HOH
HOH
986
A
HOH
211
3
HOH
HOH
987
A
HOH
212
3
HOH
HOH
988
A
HOH
215
3
HOH
HOH
989
A
HOH
217
3
HOH
HOH
990
A
HOH
218
3
HOH
HOH
991
A
HOH
219
3
HOH
HOH
992
A
HOH
220
3
HOH
HOH
993
A
HOH
222
3
HOH
HOH
994
A
HOH
223
3
HOH
HOH
995
A
HOH
224
3
HOH
HOH
996
A
HOH
225
3
HOH
HOH
997
A
HOH
226
3
HOH
HOH
998
A
HOH
228
3
HOH
HOH
999
A
HOH
229
3
HOH
HOH
1000
A
HOH
230
3
HOH
HOH
1001
A
HOH
232
3
HOH
HOH
1002
A
HOH
234
3
HOH
HOH
1003
A
HOH
235
3
HOH
HOH
1004
A
HOH
236
3
HOH
HOH
1005
A
HOH
237
3
HOH
HOH
1006
A
HOH
240
3
HOH
HOH
1007
A
HOH
241
3
HOH
HOH
1008
A
HOH
242
3
HOH
HOH
1009
A
HOH
243
3
HOH
HOH
1010
A
HOH
244
3
HOH
HOH
1011
A
HOH
245
3
HOH
HOH
1012
A
HOH
251
3
HOH
HOH
1013
A
HOH
256
3
HOH
HOH
1014
A
HOH
259
3
HOH
HOH
1015
A
HOH
260
3
HOH
HOH
1016
A
HOH
261
3
HOH
HOH
1017
A
HOH
262
3
HOH
HOH
1018
A
HOH
263
3
HOH
HOH
1019
A
HOH
269
3
HOH
HOH
1020
A
HOH
270
3
HOH
HOH
1021
A
HOH
274
3
HOH
HOH
1022
A
HOH
275
3
HOH
HOH
1023
A
HOH
277
3
HOH
HOH
1024
A
HOH
278
3
HOH
HOH
1025
A
HOH
279
3
HOH
HOH
1026
A
HOH
281
3
HOH
HOH
1027
A
HOH
282
3
HOH
HOH
1028
A
HOH
283
3
HOH
HOH
1029
A
HOH
284
3
HOH
HOH
1030
A
HOH
285
3
HOH
HOH
1031
A
HOH
286
3
HOH
HOH
1032
A
HOH
287
3
HOH
HOH
1033
A
HOH
288
3
HOH
HOH
1034
A
HOH
289
3
HOH
HOH
1035
A
HOH
290
3
HOH
HOH
1036
A
HOH
291
3
HOH
HOH
1037
A
HOH
292
3
HOH
HOH
1038
A
HOH
293
3
HOH
HOH
1039
A
HOH
295
3
HOH
HOH
1040
A
HOH
296
3
HOH
HOH
1041
A
HOH
297
3
HOH
HOH
1042
A
HOH
298
3
HOH
HOH
1043
A
HOH
299
3
HOH
HOH
1044
A
HOH
301
3
HOH
HOH
1045
A
HOH
303
3
HOH
HOH
1046
A
HOH
305
3
HOH
HOH
1047
A
HOH
306
3
HOH
HOH
1048
A
HOH
307
3
HOH
HOH
1049
A
HOH
308
3
HOH
HOH
1050
A
HOH
309
3
HOH
HOH
1051
A
HOH
310
3
HOH
HOH
1052
A
HOH
311
3
HOH
HOH
1053
A
HOH
312
3
HOH
HOH
1054
A
HOH
314
3
HOH
HOH
1055
A
HOH
315
3
HOH
HOH
1056
A
HOH
316
3
HOH
HOH
1057
A
HOH
317
3
HOH
HOH
1058
A
HOH
318
3
HOH
HOH
1059
A
HOH
320
3
HOH
HOH
1060
A
HOH
321
3
HOH
HOH
1061
A
HOH
322
3
HOH
HOH
1062
A
HOH
323
3
HOH
HOH
1063
A
HOH
324
3
HOH
HOH
1064
A
HOH
330
3
HOH
HOH
1065
A
HOH
331
3
HOH
HOH
1066
A
HOH
332
3
HOH
HOH
1067
A
HOH
333
3
HOH
HOH
1068
A
HOH
335
3
HOH
HOH
1069
A
HOH
336
3
HOH
HOH
1070
A
HOH
337
3
HOH
HOH
1071
A
HOH
338
3
HOH
HOH
1072
A
HOH
339
3
HOH
HOH
1073
A
HOH
341
3
HOH
HOH
1074
A
HOH
342
3
HOH
HOH
1075
A
HOH
345
3
HOH
HOH
1076
A
HOH
346
3
HOH
HOH
1077
A
HOH
348
3
HOH
HOH
1078
A
HOH
350
3
HOH
HOH
1079
A
HOH
351
3
HOH
HOH
1080
A
HOH
352
3
HOH
HOH
1081
A
HOH
353
3
HOH
HOH
1082
A
HOH
354
3
HOH
HOH
1083
A
HOH
355
3
HOH
HOH
1084
A
HOH
357
3
HOH
HOH
1085
A
HOH
358
3
HOH
HOH
1086
A
HOH
360
3
HOH
HOH
1087
A
HOH
361
3
HOH
HOH
1088
A
HOH
362
3
HOH
HOH
1089
A
HOH
363
3
HOH
HOH
1090
A
HOH
364
3
HOH
HOH
1091
A
HOH
365
3
HOH
HOH
1092
A
HOH
366
3
HOH
HOH
1093
A
HOH
367
3
HOH
HOH
1094
A
HOH
368
3
HOH
HOH
1095
A
HOH
370
3
HOH
HOH
1096
A
HOH
371
3
HOH
HOH
1097
A
HOH
372
3
HOH
HOH
1098
A
HOH
373
3
HOH
HOH
1099
A
HOH
374
3
HOH
HOH
1100
A
HOH
375
3
HOH
HOH
1101
A
HOH
376
3
HOH
HOH
1102
A
HOH
377
3
HOH
HOH
1103
A
HOH
378
3
HOH
HOH
1104
A
HOH
379
3
HOH
HOH
1105
A
HOH
380
3
HOH
HOH
1106
A
HOH
381
3
HOH
HOH
1107
A
HOH
382
3
HOH
HOH
1108
A
HOH
383
3
HOH
HOH
1109
A
HOH
384
3
HOH
HOH
1110
A
HOH
385
3
HOH
HOH
1111
A
HOH
386
3
HOH
HOH
1112
A
HOH
387
3
HOH
HOH
1113
A
n
1
426
A
n
2
427
A
n
3
428
A
n
4
429
A
n
5
430
A
n
6
431
A
n
7
432
A
n
8
433
A
n
9
434
A
ASP
435
n
10
ASP
435
A
ARG
436
n
11
ARG
436
A
ALA
437
n
12
ALA
437
A
GLU
438
n
13
GLU
438
A
GLU
439
n
14
GLU
439
A
GLU
440
n
15
GLU
440
A
ARG
441
n
16
ARG
441
A
ILE
442
n
17
ILE
442
A
GLU
443
n
18
GLU
443
A
ARG
444
n
19
ARG
444
A
TRP
445
n
20
TRP
445
A
VAL
446
n
21
VAL
446
A
GLU
447
n
22
GLU
447
A
GLN
448
n
23
GLN
448
A
LEU
449
n
24
LEU
449
A
ARG
450
n
25
ARG
450
A
GLU
451
n
26
GLU
451
A
ALA
452
n
27
ALA
452
A
LEU
453
n
28
LEU
453
A
VAL
454
n
29
VAL
454
A
GLY
455
n
30
GLY
455
A
ASP
456
n
31
ASP
456
A
GLY
457
n
32
GLY
457
A
PHE
458
n
33
PHE
458
A
LEU
459
n
34
LEU
459
A
LEU
460
n
35
LEU
460
A
HIS
461
n
36
HIS
461
A
TYR
462
n
37
TYR
462
A
GLN
463
n
38
GLN
463
A
PRO
464
n
39
PRO
464
A
VAL
465
n
40
VAL
465
A
LEU
466
n
41
LEU
466
A
ASN
467
n
42
ASN
467
A
LEU
468
n
43
LEU
468
A
GLN
469
n
44
GLN
469
A
n
45
470
A
n
46
471
A
PRO
472
n
47
PRO
472
A
LEU
473
n
48
LEU
473
A
GLU
474
n
49
GLU
474
A
LEU
475
n
50
LEU
475
A
TYR
476
n
51
TYR
476
A
GLN
477
n
52
GLN
477
A
ALA
478
n
53
ALA
478
A
PHE
479
n
54
PHE
479
A
LEU
480
n
55
LEU
480
A
ARG
481
n
56
ARG
481
A
LEU
482
n
57
LEU
482
A
GLU
483
n
58
GLU
483
A
ARG
484
n
59
ARG
484
A
ASN
485
n
60
ASN
485
A
GLY
486
n
61
GLY
486
A
GLU
487
n
62
GLU
487
A
MET
488
n
63
MET
488
A
MET
489
n
64
MET
489
A
SER
490
n
65
SER
490
A
PRO
491
n
66
PRO
491
A
ASN
492
n
67
ASN
492
A
ALA
493
n
68
ALA
493
A
PHE
494
n
69
PHE
494
A
MET
495
n
70
MET
495
A
ALA
496
n
71
ALA
496
A
ILE
497
n
72
ILE
497
A
ALA
498
n
73
ALA
498
A
GLU
499
n
74
GLU
499
A
GLU
500
n
75
GLU
500
A
HIS
501
n
76
HIS
501
A
ASP
502
n
77
ASP
502
A
LEU
503
n
78
LEU
503
A
VAL
504
n
79
VAL
504
A
THR
505
n
80
THR
505
A
GLU
506
n
81
GLU
506
A
ILE
507
n
82
ILE
507
A
ASP
508
n
83
ASP
508
A
ARG
509
n
84
ARG
509
A
TRP
510
n
85
TRP
510
A
VAL
511
n
86
VAL
511
A
VAL
512
n
87
VAL
512
A
ALA
513
n
88
ALA
513
A
ARG
514
n
89
ARG
514
A
ALA
515
n
90
ALA
515
A
ILE
516
n
91
ILE
516
A
ARG
517
n
92
ARG
517
A
GLN
518
n
93
GLN
518
A
LEU
519
n
94
LEU
519
A
GLY
520
n
95
GLY
520
A
GLU
521
n
96
GLU
521
A
ARG
522
n
97
ARG
522
A
GLN
523
n
98
GLN
523
A
ARG
524
n
99
ARG
524
A
ALA
525
n
100
ALA
525
A
GLY
526
n
101
GLY
526
A
HIS
527
n
102
HIS
527
A
LYS
528
n
103
LYS
528
A
THR
529
n
104
THR
529
A
HIS
530
n
105
HIS
530
A
LEU
531
n
106
LEU
531
A
LEU
532
n
107
LEU
532
A
VAL
533
n
108
VAL
533
A
ARG
534
n
109
ARG
534
A
ILE
535
n
110
ILE
535
A
GLY
536
n
111
GLY
536
A
PRO
537
n
112
PRO
537
A
ASN
538
n
113
ASN
538
A
SER
539
n
114
SER
539
A
PHE
540
n
115
PHE
540
A
SER
541
n
116
SER
541
A
ASP
542
n
117
ASP
542
A
PRO
543
n
118
PRO
543
A
GLN
544
n
119
GLN
544
A
MET
545
n
120
MET
545
A
ILE
546
n
121
ILE
546
A
ASP
547
n
122
ASP
547
A
THR
548
n
123
THR
548
A
ILE
549
n
124
ILE
549
A
ARG
550
n
125
ARG
550
A
GLU
551
n
126
GLU
551
A
GLN
552
n
127
GLN
552
A
LEU
553
n
128
LEU
553
A
ALA
554
n
129
ALA
554
A
VAL
555
n
130
VAL
555
A
TYR
556
n
131
TYR
556
A
GLY
557
n
132
GLY
557
A
VAL
558
n
133
VAL
558
A
PRO
559
n
134
PRO
559
A
GLY
560
n
135
GLY
560
A
GLU
561
n
136
GLU
561
A
ARG
562
n
137
ARG
562
A
LEU
563
n
138
LEU
563
A
TRP
564
n
139
TRP
564
A
LEU
565
n
140
LEU
565
A
GLN
566
n
141
GLN
566
A
THR
567
n
142
THR
567
A
PRO
568
n
143
PRO
568
A
GLU
569
n
144
GLU
569
A
SER
570
n
145
SER
570
A
LYS
571
n
146
LYS
571
A
VAL
572
n
147
VAL
572
A
PHE
573
n
148
PHE
573
A
THR
574
n
149
THR
574
A
HIS
575
n
150
HIS
575
A
LEU
576
n
151
LEU
576
A
ARG
577
n
152
ARG
577
A
ASN
578
n
153
ASN
578
A
ALA
579
n
154
ALA
579
A
GLN
580
n
155
GLN
580
A
GLN
581
n
156
GLN
581
A
PHE
582
n
157
PHE
582
A
LEU
583
n
158
LEU
583
A
ALA
584
n
159
ALA
584
A
ALA
585
n
160
ALA
585
A
VAL
586
n
161
VAL
586
A
SER
587
n
162
SER
587
A
ALA
588
n
163
ALA
588
A
MET
589
n
164
MET
589
A
ASP
590
n
165
ASP
590
A
CYS
591
n
166
CYS
591
A
LYS
592
n
167
LYS
592
A
VAL
593
n
168
VAL
593
A
GLY
594
n
169
GLY
594
A
LEU
595
n
170
LEU
595
A
GLU
596
n
171
GLU
596
A
GLN
597
n
172
GLN
597
A
PHE
598
n
173
PHE
598
A
GLY
599
n
174
GLY
599
A
SER
600
n
175
SER
600
A
GLY
601
n
176
GLY
601
A
LEU
602
n
177
LEU
602
A
ASP
603
n
178
ASP
603
A
SER
604
n
179
SER
604
A
PHE
605
n
180
PHE
605
A
GLN
606
n
181
GLN
606
A
LEU
607
n
182
LEU
607
A
LEU
608
n
183
LEU
608
A
ALA
609
n
184
ALA
609
A
HIS
610
n
185
HIS
610
A
PHE
611
n
186
PHE
611
A
HIS
612
n
187
HIS
612
A
PRO
613
n
188
PRO
613
A
ALA
614
n
189
ALA
614
A
PHE
615
n
190
PHE
615
A
LEU
616
n
191
LEU
616
A
LYS
617
n
192
LYS
617
A
LEU
618
n
193
LEU
618
A
ASP
619
n
194
ASP
619
A
ARG
620
n
195
ARG
620
A
GLY
621
n
196
GLY
621
A
ILE
622
n
197
ILE
622
A
THR
623
n
198
THR
623
A
GLY
624
n
199
GLY
624
A
ASP
625
n
200
ASP
625
A
ILE
626
n
201
ILE
626
A
ALA
627
n
202
ALA
627
A
SER
628
n
203
SER
628
A
ALA
629
n
204
ALA
629
A
ARG
630
n
205
ARG
630
A
ASP
631
n
206
ASP
631
A
SER
632
n
207
SER
632
A
GLN
633
n
208
GLN
633
A
GLU
634
n
209
GLU
634
A
LYS
635
n
210
LYS
635
A
ILE
636
n
211
ILE
636
A
ARG
637
n
212
ARG
637
A
GLU
638
n
213
GLU
638
A
ILE
639
n
214
ILE
639
A
THR
640
n
215
THR
640
A
SER
641
n
216
SER
641
A
ARG
642
n
217
ARG
642
A
ALA
643
n
218
ALA
643
A
GLN
644
n
219
GLN
644
A
PRO
645
n
220
PRO
645
A
ALA
646
n
221
ALA
646
A
GLY
647
n
222
GLY
647
A
ILE
648
n
223
ILE
648
A
LEU
649
n
224
LEU
649
A
THR
650
n
225
THR
650
A
MET
651
n
226
MET
651
A
ALA
652
n
227
ALA
652
A
GLU
653
n
228
GLU
653
A
PHE
654
n
229
PHE
654
A
VAL
655
n
230
VAL
655
A
ALA
656
n
231
ALA
656
A
ASP
657
n
232
ASP
657
A
ALA
658
n
233
ALA
658
A
GLN
659
n
234
GLN
659
A
SER
660
n
235
SER
660
A
MET
661
n
236
MET
661
A
SER
662
n
237
SER
662
A
SER
663
n
238
SER
663
A
PHE
664
n
239
PHE
664
A
PHE
665
n
240
PHE
665
A
SER
666
n
241
SER
666
A
ALA
667
n
242
ALA
667
A
GLY
668
n
243
GLY
668
A
VAL
669
n
244
VAL
669
A
ASP
670
n
245
ASP
670
A
TYR
671
n
246
TYR
671
A
VAL
672
n
247
VAL
672
A
GLN
673
n
248
GLN
673
A
GLY
674
n
249
GLY
674
A
ASP
675
n
250
ASP
675
A
PHE
676
n
251
PHE
676
A
VAL
677
n
252
VAL
677
A
ALA
678
n
253
ALA
678
A
PRO
679
n
254
PRO
679
A
THR
680
n
255
THR
680
A
GLY
681
n
256
GLY
681
A
PRO
682
n
257
PRO
682
A
LEU
683
n
258
LEU
683
A
MET
684
n
259
MET
684
A
ASN
685
n
260
ASN
685
A
TYR
686
n
261
TYR
686
A
GLU
687
n
262
GLU
687
A
PHE
688
n
263
PHE
688
A
GLY
689
n
264
GLY
689
A
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
461
A
N
HIS
36
A
O
PHE
479
A
O
PHE
54
A
N
TYR
476
A
N
TYR
51
A
O
LEU
532
A
O
LEU
107
A
N
LEU
531
A
N
LEU
106
A
O
TRP
564
A
O
TRP
139
A
N
LEU
565
A
N
LEU
140
A
O
LYS
592
A
O
LYS
167
A
N
LEU
595
A
N
LEU
170
A
O
LYS
617
A
O
LYS
192
A
N
LEU
618
A
N
LEU
193
A
O
MET
651
A
O
MET
226
A
N
ALA
652
A
N
ALA
227
A
O
TYR
671
A
O
TYR
246
A
O
VAL
672
A
O
VAL
247
A
N
LEU
466
A
N
LEU
41
A
N
HIS
461
A
N
HIS
36
A
O
PHE
479
A
O
PHE
54
A
N
LEU
482
A
N
LEU
57
A
O
MET
489
A
O
MET
64
1
A
HOH
1104
C
HOH
1
A
VAL
426
A
VAL
1
1
Y
1
A
SER
427
A
SER
2
1
Y
1
A
ILE
428
A
ILE
3
1
Y
1
A
TYR
429
A
TYR
4
1
Y
1
A
ASP
430
A
ASP
5
1
Y
1
A
PRO
431
A
PRO
6
1
Y
1
A
ALA
432
A
ALA
7
1
Y
1
A
ALA
433
A
ALA
8
1
Y
1
A
ALA
434
A
ALA
9
1
Y
1
A
GLY
470
A
GLY
45
1
Y
1
A
GLU
471
A
GLU
46
1
Y
1
A
A
O
O
HOH
HOH
1080
1099
2.13
1
4.60
0.50
120.30
124.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
562
562
562
N
1
-3.98
0.50
120.30
116.32
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
562
562
562
N
1
A
A
CB
OG
SER
SER
490
490
0.080
0.013
1.418
1.498
N
1
A
LEU
473
-175.91
138.98
1
A
ALA
678
-173.01
146.17
17.828
-0.01
0.00
0.00
0.00
0.00
0.00
0.963
0.942
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23194
0.18234
0.18480
1.55
30.00
1962
36555
36555
5.1
98.36
1.608
0.060
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.089
0.096
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.55
30.00
313
2368
46
0
2009
0.015
0.022
2252
0.001
0.020
1537
1.543
1.983
3092
0.972
3.000
3744
5.803
5.000
295
35.904
23.729
118
13.354
15.000
384
14.834
15.000
22
0.095
0.200
338
0.007
0.020
2565
0.001
0.020
488
1.010
1.500
1333
0.257
1.500
538
1.747
2.000
2164
2.269
3.000
919
3.570
4.500
907
0.275
0.218
1.590
168
2651
20
98.84
1.40
50
4FOJ
50267
50267
0
0
0.05
1
38.45
10.8
95
1.40
1.45
1.93
0.55
1
4.4
68
data collection
HKL-2000
phasing
PHASER
refinement
REFMAC
5.5.0110
data reduction
HKL-2000
data scaling
HKL-2000
1.55 A Crystal Structure of Xanthomonas citri FimX EAL domain in complex with c-diGMP
1
N
N
2
N
N
3
N
N
A
ASP
435
A
ASP
10
HELX_P
A
GLY
455
A
GLY
30
1
1
21
A
PHE
494
A
PHE
69
HELX_P
A
HIS
501
A
HIS
76
1
2
8
A
LEU
503
A
LEU
78
HELX_P
A
ALA
525
A
ALA
100
1
3
23
A
GLY
536
A
GLY
111
HELX_P
A
PHE
540
A
PHE
115
5
4
5
A
ASP
542
A
ASP
117
HELX_P
A
GLY
557
A
GLY
132
1
5
16
A
PRO
559
A
PRO
134
HELX_P
A
GLU
561
A
GLU
136
5
6
3
A
GLU
569
A
GLU
144
HELX_P
A
HIS
575
A
HIS
150
1
7
7
A
HIS
575
A
HIS
150
HELX_P
A
ALA
588
A
ALA
163
1
8
14
A
GLY
601
A
GLY
176
HELX_P
A
PHE
611
A
PHE
186
1
9
11
A
ASP
619
A
ASP
194
HELX_P
A
GLY
624
A
GLY
199
1
10
6
A
ALA
629
A
ALA
204
HELX_P
A
GLY
647
A
GLY
222
1
11
19
A
ASP
657
A
ASP
232
HELX_P
A
ALA
667
A
ALA
242
1
12
11
PROTEIN BINDING
TIM like Barrel, beta-(beta/alpha)6-beta, c-di-GMP binding, Type IV pilus assembly, PilZ, PROTEIN BINDING
Q8PJX9_XANAC
UNP
1
426
Q8PJX9
VSIYDPAAADRAEEERIERWVEQLREALVGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLVT
EIDRWVVARAIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLAA
VSAMDCKVGLEQFGSGLDSFQLLAHFHPAFLKLDRGITGDIASARDSQEKIREITSRAQPAGILTMAEFVADAQSMSSFF
SAGVDYVQGDFVAPTGPLMNYEFG
426
689
4FOJ
426
689
Q8PJX9
A
1
1
264
9
3
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
458
A
PHE
33
A
PRO
464
A
PRO
39
A
LEU
475
A
LEU
50
A
ARG
484
A
ARG
59
A
HIS
530
A
HIS
105
A
ARG
534
A
ARG
109
A
LEU
563
A
LEU
138
A
PRO
568
A
PRO
143
A
LYS
592
A
LYS
167
A
PHE
598
A
PHE
173
A
PHE
615
A
PHE
190
A
LEU
618
A
LEU
193
A
LEU
649
A
LEU
224
A
ALA
652
A
ALA
227
A
TYR
671
A
TYR
246
A
VAL
672
A
VAL
247
A
LEU
466
A
LEU
41
A
ASN
467
A
ASN
42
A
PHE
458
A
PHE
33
A
PRO
464
A
PRO
39
A
LEU
475
A
LEU
50
A
ARG
484
A
ARG
59
A
GLU
487
A
GLU
62
A
MET
489
A
MET
64
BINDING SITE FOR RESIDUE C2E A 701
A
C2E
701
Software
31
A
GLN
463
A
GLN
38
31
1_555
A
PHE
479
A
PHE
54
31
1_555
A
LEU
480
A
LEU
55
31
1_555
A
ARG
481
A
ARG
56
31
1_555
A
SER
490
A
SER
65
31
1_555
A
PRO
491
A
PRO
66
31
1_555
A
ASN
492
A
ASN
67
31
1_555
A
MET
495
A
MET
70
31
1_555
A
ASP
508
A
ASP
83
31
1_555
A
ARG
534
A
ARG
109
31
1_555
A
ARG
550
A
ARG
125
31
4_455
A
GLU
551
A
GLU
126
31
4_455
A
ALA
554
A
ALA
129
31
4_455
A
GLU
653
A
GLU
228
31
1_555
A
PHE
654
A
PHE
229
31
1_555
A
GLN
673
A
GLN
248
31
1_555
A
GLY
674
A
GLY
249
31
1_555
A
ASP
675
A
ASP
250
31
1_555
A
THR
680
A
THR
255
31
1_555
A
HOH
804
C
HOH
31
4_455
A
HOH
807
C
HOH
31
1_555
A
HOH
820
C
HOH
31
1_555
A
HOH
822
C
HOH
31
4_455
A
HOH
854
C
HOH
31
1_555
A
HOH
878
C
HOH
31
1_555
A
HOH
906
C
HOH
31
1_555
A
HOH
955
C
HOH
31
1_555
A
HOH
974
C
HOH
31
1_555
A
HOH
1000
C
HOH
31
1_555
A
HOH
1013
C
HOH
31
1_555
A
HOH
1073
C
HOH
31
1_555
18
P 21 21 2