0.014752
0.000000
0.000000
0.000000
0.014752
0.000000
0.000000
0.000000
0.010625
0.00000
0.00000
0.00000
Scharf, L.
Bjorkman, P.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
67.787
67.787
94.115
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-fucopyranose
alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose
L-saccharide, alpha linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H19 N O9
309.270
N-acetyl-alpha-neuraminic acid
N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID
D-saccharide, alpha linking
C7 H17 N O3
163.215
TRIS(HYDROXYETHYL)AMINOMETHANE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
109
E3268
E3277
10.1073/pnas.1217207109
23115339
Complex-type N-glycan recognition by potent broadly neutralizing HIV antibodies.
2012
100
1
PIXEL
2012-03-09
DECTRIS PILATUS 6M
LIQUID NITROGEN-COOLED DOUBLE CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
1.033
1.0
BL12-2
SSRL
1.033
SYNCHROTRON
SSRL BEAMLINE BL12-2
26343.484
Fab heavy chain
1
man
polymer
22602.961
Fab light chain
1
man
polymer
1916.745
N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
163.215
TRIS(HYDROXYETHYL)AMINOMETHANE
1
syn
non-polymer
18.015
water
146
nat
water
no
no
QMQLQESGPGLVKPSETLSLTCSVSGASISDSYWSWIRRSPGKGLEWIGYVHKSGDTNYSPSLKSRVNLSLDTSKNQVSL
SLVAATAADSGKYYCARTLHGRRIYGIVAFNEWFTYFYMDVWGNGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL
VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHH
HHHH
QMQLQESGPGLVKPSETLSLTCSVSGASISDSYWSWIRRSPGKGLEWIGYVHKSGDTNYSPSLKSRVNLSLDTSKNQVSL
SLVAATAADSGKYYCARTLHGRRIYGIVAFNEWFTYFYMDVWGNGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL
VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHH
HHHH
H
polypeptide(L)
no
no
SDISVAPGETARISCGEKSLGSRAVQWYQHRAGQAPSLIIYNNQDRPSGIPERFSGSPDSPFGTTATLTITSVEAGDEAD
YYCHIWDSRVPTKWVFGGGTTLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET
TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
SDISVAPGETARISCGEKSLGSRAVQWYQHRAGQAPSLIIYNNQDRPSGIPERFSGSPDSPFGTTATLTITSVEAGDEAD
YYCHIWDSRVPTKWVFGGGTTLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET
TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
human
sample
9606
Homo sapiens
HEK293-6E
9606
Homo sapiens
plasmid
human
human
sample
9606
Homo sapiens
HEK293-6E
9606
homo sapiens
plasmid
1
2.21
44.32
5.5
PEG 10000, Bis Tris HCl, CH3COOHNH4, pH 5.5, vapor diffusion, temperature 298K
298
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_unobs_or_zero_occ_atoms
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
entity_src_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Advisory
Data collection
Database references
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Source and taxonomy
Structure summary
1
0
2012-11-14
1
1
2012-11-21
1
2
2012-12-12
2
0
2020-07-29
2
1
2021-05-19
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_entity_src_gen.gene_src_common_name
_entity_src_gen.host_org_common_name
_entity_src_gen.pdbx_host_org_cell_line
_entity_src_gen.pdbx_host_org_strain
H
NAG
305
n
A
NAG
1
H
NAG
306
n
A
NAG
2
H
BMA
301
n
A
BMA
3
H
MAN
302
n
A
MAN
4
H
NAG
307
n
A
NAG
5
H
GAL
308
n
A
GAL
6
H
SIA
310
n
A
SIA
7
H
MAN
303
n
A
MAN
8
H
NAG
304
n
A
NAG
9
H
FUC
309
n
A
FUC
10
DManpb
b-D-mannopyranose
b-D-Manp
Man
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
DNeup5Aca
N-acetyl-a-D-neuraminic acid
a-D-Neup5Ac
Neu5Ac
RCSB
Y
RCSB
2012-06-25
REL
REL
oligosaccharide
DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/6,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-6/a4-b1_a6-j1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{[(6+2)][a-D-Neup5Ac]{}}}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}}}[(6+1)][a-L-Fucp]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
BMA
NAG
3
2
3
O1
HO4
sing
C1
O3
MAN
BMA
4
3
3
O1
HO3
sing
C1
O2
NAG
MAN
5
4
3
O1
HO2
sing
C1
O4
GAL
NAG
6
5
3
O1
HO4
sing
C2
O6
SIA
GAL
7
6
3
O2
HO6
sing
C1
O6
MAN
BMA
8
3
3
O1
HO6
sing
C1
O2
NAG
MAN
9
8
3
O1
HO2
sing
C1
O6
FUC
NAG
10
1
3
O1
HO6
sing
n
n
n
n
n
n
n
n
n
n
TAM
TRIS(HYDROXYETHYL)AMINOMETHANE
HOH
water
TAM
311
4
TAM
TAM
311
H
HOH
401
5
HOH
HOH
401
H
HOH
402
5
HOH
HOH
402
H
HOH
403
5
HOH
HOH
403
H
HOH
404
5
HOH
HOH
404
H
HOH
405
5
HOH
HOH
405
H
HOH
406
5
HOH
HOH
406
H
HOH
407
5
HOH
HOH
407
H
HOH
408
5
HOH
HOH
408
H
HOH
409
5
HOH
HOH
409
H
HOH
410
5
HOH
HOH
410
H
HOH
411
5
HOH
HOH
411
H
HOH
412
5
HOH
HOH
412
H
HOH
413
5
HOH
HOH
413
H
HOH
414
5
HOH
HOH
414
H
HOH
415
5
HOH
HOH
415
H
HOH
416
5
HOH
HOH
416
H
HOH
417
5
HOH
HOH
417
H
HOH
418
5
HOH
HOH
418
H
HOH
419
5
HOH
HOH
419
H
HOH
420
5
HOH
HOH
420
H
HOH
421
5
HOH
HOH
421
H
HOH
422
5
HOH
HOH
422
H
HOH
423
5
HOH
HOH
423
H
HOH
424
5
HOH
HOH
424
H
HOH
425
5
HOH
HOH
425
H
HOH
426
5
HOH
HOH
426
H
HOH
427
5
HOH
HOH
427
H
HOH
428
5
HOH
HOH
428
H
HOH
429
5
HOH
HOH
429
H
HOH
430
5
HOH
HOH
430
H
HOH
431
5
HOH
HOH
431
H
HOH
432
5
HOH
HOH
432
H
HOH
434
5
HOH
HOH
434
H
HOH
435
5
HOH
HOH
435
H
HOH
436
5
HOH
HOH
436
H
HOH
437
5
HOH
HOH
437
H
HOH
438
5
HOH
HOH
438
H
HOH
439
5
HOH
HOH
439
H
HOH
440
5
HOH
HOH
440
H
HOH
441
5
HOH
HOH
441
H
HOH
442
5
HOH
HOH
442
H
HOH
443
5
HOH
HOH
443
H
HOH
444
5
HOH
HOH
444
H
HOH
445
5
HOH
HOH
445
H
HOH
446
5
HOH
HOH
446
H
HOH
447
5
HOH
HOH
447
H
HOH
448
5
HOH
HOH
448
H
HOH
450
5
HOH
HOH
450
H
HOH
451
5
HOH
HOH
451
H
HOH
452
5
HOH
HOH
452
H
HOH
453
5
HOH
HOH
453
H
HOH
454
5
HOH
HOH
454
H
HOH
455
5
HOH
HOH
455
H
HOH
456
5
HOH
HOH
456
H
HOH
457
5
HOH
HOH
457
H
HOH
458
5
HOH
HOH
458
H
HOH
459
5
HOH
HOH
459
H
HOH
460
5
HOH
HOH
460
H
HOH
461
5
HOH
HOH
461
H
HOH
462
5
HOH
HOH
462
H
HOH
463
5
HOH
HOH
463
H
HOH
464
5
HOH
HOH
464
H
HOH
465
5
HOH
HOH
465
H
HOH
466
5
HOH
HOH
466
H
HOH
467
5
HOH
HOH
467
H
HOH
468
5
HOH
HOH
468
H
HOH
469
5
HOH
HOH
469
H
HOH
470
5
HOH
HOH
470
H
HOH
471
5
HOH
HOH
471
H
HOH
474
5
HOH
HOH
474
H
HOH
475
5
HOH
HOH
475
H
HOH
476
5
HOH
HOH
476
H
HOH
477
5
HOH
HOH
477
H
HOH
478
5
HOH
HOH
478
H
HOH
479
5
HOH
HOH
479
H
HOH
480
5
HOH
HOH
480
H
HOH
481
5
HOH
HOH
481
H
HOH
401
5
HOH
HOH
401
L
HOH
402
5
HOH
HOH
402
L
HOH
403
5
HOH
HOH
403
L
HOH
404
5
HOH
HOH
404
L
HOH
405
5
HOH
HOH
405
L
HOH
406
5
HOH
HOH
406
L
HOH
407
5
HOH
HOH
407
L
HOH
408
5
HOH
HOH
408
L
HOH
409
5
HOH
HOH
409
L
HOH
410
5
HOH
HOH
410
L
HOH
411
5
HOH
HOH
411
L
HOH
412
5
HOH
HOH
412
L
HOH
413
5
HOH
HOH
413
L
HOH
414
5
HOH
HOH
414
L
HOH
415
5
HOH
HOH
415
L
HOH
416
5
HOH
HOH
416
L
HOH
417
5
HOH
HOH
417
L
HOH
418
5
HOH
HOH
418
L
HOH
419
5
HOH
HOH
419
L
HOH
420
5
HOH
HOH
420
L
HOH
421
5
HOH
HOH
421
L
HOH
422
5
HOH
HOH
422
L
HOH
423
5
HOH
HOH
423
L
HOH
424
5
HOH
HOH
424
L
HOH
425
5
HOH
HOH
425
L
HOH
426
5
HOH
HOH
426
L
HOH
427
5
HOH
HOH
427
L
HOH
428
5
HOH
HOH
428
L
HOH
429
5
HOH
HOH
429
L
HOH
430
5
HOH
HOH
430
L
HOH
431
5
HOH
HOH
431
L
HOH
432
5
HOH
HOH
432
L
HOH
433
5
HOH
HOH
433
L
HOH
434
5
HOH
HOH
434
L
HOH
435
5
HOH
HOH
435
L
HOH
436
5
HOH
HOH
436
L
HOH
437
5
HOH
HOH
437
L
HOH
438
5
HOH
HOH
438
L
HOH
439
5
HOH
HOH
439
L
HOH
440
5
HOH
HOH
440
L
HOH
441
5
HOH
HOH
441
L
HOH
442
5
HOH
HOH
442
L
HOH
443
5
HOH
HOH
443
L
HOH
444
5
HOH
HOH
444
L
HOH
445
5
HOH
HOH
445
L
HOH
446
5
HOH
HOH
446
L
HOH
447
5
HOH
HOH
447
L
HOH
448
5
HOH
HOH
448
L
HOH
449
5
HOH
HOH
449
L
HOH
450
5
HOH
HOH
450
L
HOH
451
5
HOH
HOH
451
L
HOH
452
5
HOH
HOH
452
L
HOH
453
5
HOH
HOH
453
L
HOH
454
5
HOH
HOH
454
L
HOH
455
5
HOH
HOH
455
L
HOH
456
5
HOH
HOH
456
L
HOH
457
5
HOH
HOH
457
L
HOH
458
5
HOH
HOH
458
L
HOH
459
5
HOH
HOH
459
L
HOH
460
5
HOH
HOH
460
L
HOH
461
5
HOH
HOH
461
L
HOH
462
5
HOH
HOH
462
L
HOH
463
5
HOH
HOH
463
L
HOH
464
5
HOH
HOH
464
L
HOH
466
5
HOH
HOH
466
L
HOH
467
5
HOH
HOH
467
L
HOH
469
5
HOH
HOH
469
L
HOH
470
5
HOH
HOH
470
L
HOH
471
5
HOH
HOH
471
L
2.500
2.500
38.660
38.660
GLN
1
n
1
GLN
1
H
MET
2
n
2
MET
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLY
10
n
10
GLY
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLU
16
n
16
GLU
16
H
THR
17
n
17
THR
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
LEU
20
n
20
LEU
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
SER
23
n
23
SER
23
H
VAL
24
n
24
VAL
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
ALA
27
n
27
ALA
27
H
SER
28
n
28
SER
28
H
ILE
29
n
29
ILE
29
H
SER
30
n
30
SER
30
H
ASP
31
n
31
ASP
31
H
SER
32
n
32
SER
32
H
TYR
33
n
33
TYR
33
H
TRP
34
n
34
TRP
34
H
SER
35
n
35
SER
35
H
TRP
36
n
36
TRP
36
H
ILE
37
n
37
ILE
37
H
ARG
38
n
38
ARG
38
H
ARG
39
n
39
ARG
39
H
SER
40
n
40
SER
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
LYS
43
n
43
LYS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
TYR
50
n
50
TYR
50
H
VAL
51
n
51
VAL
51
H
HIS
52
n
52
HIS
52
H
LYS
53
n
53
LYS
53
H
SER
54
n
54
SER
54
H
GLY
55
n
55
GLY
55
H
ASP
56
n
56
ASP
56
H
THR
57
n
57
THR
57
H
ASN
58
n
58
ASN
58
H
TYR
59
n
59
TYR
59
H
SER
60
n
60
SER
60
H
PRO
61
n
61
PRO
61
H
SER
62
n
62
SER
62
H
LEU
63
n
63
LEU
63
H
LYS
64
n
64
LYS
64
H
SER
65
n
65
SER
65
H
ARG
66
n
66
ARG
66
H
VAL
67
n
67
VAL
67
H
ASN
68
n
68
ASN
68
H
LEU
69
n
69
LEU
69
H
SER
70
n
70
SER
70
H
LEU
71
n
71
LEU
71
H
ASP
72
n
72
ASP
72
H
THR
73
n
73
THR
73
H
SER
74
n
74
SER
74
H
LYS
75
n
75
LYS
75
H
ASN
76
n
76
ASN
76
H
GLN
77
n
77
GLN
77
H
VAL
78
n
78
VAL
78
H
SER
79
n
79
SER
79
H
LEU
80
n
80
LEU
80
H
SER
81
n
81
SER
81
H
LEU
82
n
82
LEU
82
H
VAL
82
n
83
A
VAL
82
H
ALA
82
n
84
B
ALA
82
H
ALA
82
n
85
C
ALA
82
H
THR
83
n
86
THR
83
H
ALA
84
n
87
ALA
84
H
ALA
85
n
88
ALA
85
H
ASP
86
n
89
ASP
86
H
SER
87
n
90
SER
87
H
GLY
88
n
91
GLY
88
H
LYS
89
n
92
LYS
89
H
TYR
90
n
93
TYR
90
H
TYR
91
n
94
TYR
91
H
CYS
92
n
95
CYS
92
H
ALA
93
n
96
ALA
93
H
ARG
94
n
97
ARG
94
H
THR
95
n
98
THR
95
H
LEU
96
n
99
LEU
96
H
HIS
97
n
100
HIS
97
H
GLY
98
n
101
GLY
98
H
ARG
99
n
102
ARG
99
H
ARG
100
n
103
ARG
100
H
ILE
100
n
104
A
ILE
100
H
TYR
100
n
105
B
TYR
100
H
GLY
100
n
106
C
GLY
100
H
ILE
100
n
107
D
ILE
100
H
VAL
100
n
108
E
VAL
100
H
ALA
100
n
109
F
ALA
100
H
PHE
100
n
110
G
PHE
100
H
ASN
100
n
111
H
ASN
100
H
GLU
100
n
112
I
GLU
100
H
TRP
100
n
113
J
TRP
100
H
PHE
100
n
114
K
PHE
100
H
THR
100
n
115
L
THR
100
H
TYR
100
n
116
M
TYR
100
H
PHE
100
n
117
N
PHE
100
H
TYR
100
n
118
O
TYR
100
H
MET
100
n
119
P
MET
100
H
ASP
101
n
120
ASP
101
H
VAL
102
n
121
VAL
102
H
TRP
103
n
122
TRP
103
H
GLY
104
n
123
GLY
104
H
ASN
105
n
124
ASN
105
H
GLY
106
n
125
GLY
106
H
THR
107
n
126
THR
107
H
GLN
108
n
127
GLN
108
H
VAL
109
n
128
VAL
109
H
THR
110
n
129
THR
110
H
VAL
111
n
130
VAL
111
H
SER
112
n
131
SER
112
H
SER
113
n
132
SER
113
H
ALA
114
n
133
ALA
114
H
SER
115
n
134
SER
115
H
THR
116
n
135
THR
116
H
LYS
117
n
136
LYS
117
H
GLY
118
n
137
GLY
118
H
PRO
119
n
138
PRO
119
H
SER
120
n
139
SER
120
H
VAL
121
n
140
VAL
121
H
PHE
122
n
141
PHE
122
H
PRO
123
n
142
PRO
123
H
LEU
124
n
143
LEU
124
H
ALA
125
n
144
ALA
125
H
PRO
126
n
145
PRO
126
H
n
146
127
H
n
147
128
H
n
148
129
H
n
149
130
H
n
150
131
H
SER
132
n
151
SER
132
H
GLY
133
n
152
GLY
133
H
GLY
134
n
153
GLY
134
H
THR
135
n
154
THR
135
H
ALA
136
n
155
ALA
136
H
ALA
137
n
156
ALA
137
H
LEU
138
n
157
LEU
138
H
GLY
139
n
158
GLY
139
H
CYS
140
n
159
CYS
140
H
LEU
141
n
160
LEU
141
H
VAL
142
n
161
VAL
142
H
LYS
143
n
162
LYS
143
H
ASP
144
n
163
ASP
144
H
TYR
145
n
164
TYR
145
H
PHE
146
n
165
PHE
146
H
PRO
147
n
166
PRO
147
H
GLU
148
n
167
GLU
148
H
PRO
149
n
168
PRO
149
H
VAL
150
n
169
VAL
150
H
THR
151
n
170
THR
151
H
VAL
152
n
171
VAL
152
H
SER
153
n
172
SER
153
H
TRP
154
n
173
TRP
154
H
ASN
155
n
174
ASN
155
H
SER
156
n
175
SER
156
H
GLY
157
n
176
GLY
157
H
ALA
158
n
177
ALA
158
H
LEU
159
n
178
LEU
159
H
THR
160
n
179
THR
160
H
SER
161
n
180
SER
161
H
GLY
162
n
181
GLY
162
H
VAL
163
n
182
VAL
163
H
HIS
164
n
183
HIS
164
H
THR
165
n
184
THR
165
H
PHE
166
n
185
PHE
166
H
PRO
167
n
186
PRO
167
H
ALA
168
n
187
ALA
168
H
VAL
169
n
188
VAL
169
H
LEU
170
n
189
LEU
170
H
GLN
171
n
190
GLN
171
H
SER
172
n
191
SER
172
H
SER
173
n
192
SER
173
H
GLY
174
n
193
GLY
174
H
LEU
175
n
194
LEU
175
H
TYR
176
n
195
TYR
176
H
SER
177
n
196
SER
177
H
LEU
178
n
197
LEU
178
H
SER
179
n
198
SER
179
H
SER
180
n
199
SER
180
H
VAL
181
n
200
VAL
181
H
VAL
182
n
201
VAL
182
H
THR
183
n
202
THR
183
H
VAL
184
n
203
VAL
184
H
PRO
185
n
204
PRO
185
H
SER
186
n
205
SER
186
H
SER
187
n
206
SER
187
H
SER
188
n
207
SER
188
H
LEU
189
n
208
LEU
189
H
GLY
190
n
209
GLY
190
H
THR
191
n
210
THR
191
H
GLN
192
n
211
GLN
192
H
THR
193
n
212
THR
193
H
TYR
194
n
213
TYR
194
H
ILE
195
n
214
ILE
195
H
CYS
196
n
215
CYS
196
H
ASN
197
n
216
ASN
197
H
VAL
198
n
217
VAL
198
H
ASN
199
n
218
ASN
199
H
HIS
200
n
219
HIS
200
H
LYS
201
n
220
LYS
201
H
PRO
202
n
221
PRO
202
H
SER
203
n
222
SER
203
H
ASN
204
n
223
ASN
204
H
THR
205
n
224
THR
205
H
LYS
206
n
225
LYS
206
H
VAL
207
n
226
VAL
207
H
ASP
208
n
227
ASP
208
H
LYS
209
n
228
LYS
209
H
ARG
210
n
229
ARG
210
H
VAL
211
n
230
VAL
211
H
GLU
212
n
231
GLU
212
H
PRO
213
n
232
PRO
213
H
n
233
214
H
n
234
215
H
n
235
216
H
n
236
217
H
n
237
218
H
n
238
219
H
n
239
220
H
n
240
221
H
n
241
222
H
n
242
223
H
n
243
224
H
n
244
225
H
n
1
9
L
ASP
10
n
2
ASP
10
L
ILE
11
n
3
ILE
11
L
SER
12
n
4
SER
12
L
VAL
13
n
5
VAL
13
L
ALA
14
n
6
ALA
14
L
PRO
15
n
7
PRO
15
L
GLY
16
n
8
GLY
16
L
GLU
17
n
9
GLU
17
L
THR
18
n
10
THR
18
L
ALA
19
n
11
ALA
19
L
ARG
20
n
12
ARG
20
L
ILE
21
n
13
ILE
21
L
SER
22
n
14
SER
22
L
CYS
23
n
15
CYS
23
L
GLY
24
n
16
GLY
24
L
GLU
25
n
17
GLU
25
L
LYS
26
n
18
LYS
26
L
SER
27
n
19
SER
27
L
LEU
28
n
20
LEU
28
L
GLY
29
n
21
GLY
29
L
SER
30
n
22
SER
30
L
ARG
31
n
23
ARG
31
L
ALA
32
n
24
ALA
32
L
VAL
33
n
25
VAL
33
L
GLN
34
n
26
GLN
34
L
TRP
35
n
27
TRP
35
L
TYR
36
n
28
TYR
36
L
GLN
37
n
29
GLN
37
L
HIS
38
n
30
HIS
38
L
ARG
39
n
31
ARG
39
L
ALA
40
n
32
ALA
40
L
GLY
41
n
33
GLY
41
L
GLN
42
n
34
GLN
42
L
ALA
43
n
35
ALA
43
L
PRO
44
n
36
PRO
44
L
SER
45
n
37
SER
45
L
LEU
46
n
38
LEU
46
L
ILE
47
n
39
ILE
47
L
ILE
48
n
40
ILE
48
L
TYR
49
n
41
TYR
49
L
ASN
50
n
42
ASN
50
L
ASN
51
n
43
ASN
51
L
GLN
52
n
44
GLN
52
L
ASP
53
n
45
ASP
53
L
ARG
54
n
46
ARG
54
L
PRO
55
n
47
PRO
55
L
SER
56
n
48
SER
56
L
GLY
57
n
49
GLY
57
L
ILE
58
n
50
ILE
58
L
PRO
59
n
51
PRO
59
L
GLU
60
n
52
GLU
60
L
ARG
61
n
53
ARG
61
L
PHE
62
n
54
PHE
62
L
SER
63
n
55
SER
63
L
GLY
64
n
56
GLY
64
L
SER
65
n
57
SER
65
L
PRO
66
n
58
PRO
66
L
ASP
66
n
59
A
ASP
66
L
SER
66
n
60
B
SER
66
L
PRO
66
n
61
C
PRO
66
L
PHE
67
n
62
PHE
67
L
GLY
68
n
63
GLY
68
L
THR
69
n
64
THR
69
L
THR
70
n
65
THR
70
L
ALA
71
n
66
ALA
71
L
THR
72
n
67
THR
72
L
LEU
73
n
68
LEU
73
L
THR
74
n
69
THR
74
L
ILE
75
n
70
ILE
75
L
THR
76
n
71
THR
76
L
SER
77
n
72
SER
77
L
VAL
78
n
73
VAL
78
L
GLU
79
n
74
GLU
79
L
ALA
80
n
75
ALA
80
L
GLY
81
n
76
GLY
81
L
ASP
82
n
77
ASP
82
L
GLU
83
n
78
GLU
83
L
ALA
84
n
79
ALA
84
L
ASP
85
n
80
ASP
85
L
TYR
86
n
81
TYR
86
L
TYR
87
n
82
TYR
87
L
CYS
88
n
83
CYS
88
L
HIS
89
n
84
HIS
89
L
ILE
90
n
85
ILE
90
L
TRP
91
n
86
TRP
91
L
ASP
92
n
87
ASP
92
L
SER
93
n
88
SER
93
L
ARG
94
n
89
ARG
94
L
VAL
95
n
90
VAL
95
L
PRO
95
n
91
A
PRO
95
L
THR
95
n
92
B
THR
95
L
LYS
95
n
93
C
LYS
95
L
TRP
96
n
94
TRP
96
L
VAL
97
n
95
VAL
97
L
PHE
98
n
96
PHE
98
L
GLY
99
n
97
GLY
99
L
GLY
100
n
98
GLY
100
L
GLY
101
n
99
GLY
101
L
THR
102
n
100
THR
102
L
THR
103
n
101
THR
103
L
LEU
104
n
102
LEU
104
L
THR
105
n
103
THR
105
L
VAL
106
n
104
VAL
106
L
LEU
107
n
105
LEU
107
L
GLY
108
n
106
GLY
108
L
GLN
109
n
107
GLN
109
L
PRO
110
n
108
PRO
110
L
LYS
111
n
109
LYS
111
L
ALA
112
n
110
ALA
112
L
ALA
113
n
111
ALA
113
L
PRO
114
n
112
PRO
114
L
SER
115
n
113
SER
115
L
VAL
116
n
114
VAL
116
L
THR
117
n
115
THR
117
L
LEU
118
n
116
LEU
118
L
PHE
119
n
117
PHE
119
L
PRO
120
n
118
PRO
120
L
PRO
121
n
119
PRO
121
L
SER
122
n
120
SER
122
L
SER
123
n
121
SER
123
L
GLU
124
n
122
GLU
124
L
GLU
125
n
123
GLU
125
L
LEU
126
n
124
LEU
126
L
GLN
127
n
125
GLN
127
L
ALA
128
n
126
ALA
128
L
ASN
129
n
127
ASN
129
L
LYS
130
n
128
LYS
130
L
ALA
131
n
129
ALA
131
L
THR
132
n
130
THR
132
L
LEU
133
n
131
LEU
133
L
VAL
134
n
132
VAL
134
L
CYS
135
n
133
CYS
135
L
LEU
136
n
134
LEU
136
L
ILE
137
n
135
ILE
137
L
SER
138
n
136
SER
138
L
ASP
139
n
137
ASP
139
L
PHE
140
n
138
PHE
140
L
TYR
141
n
139
TYR
141
L
PRO
142
n
140
PRO
142
L
GLY
143
n
141
GLY
143
L
ALA
144
n
142
ALA
144
L
VAL
145
n
143
VAL
145
L
THR
146
n
144
THR
146
L
VAL
147
n
145
VAL
147
L
ALA
148
n
146
ALA
148
L
TRP
149
n
147
TRP
149
L
LYS
150
n
148
LYS
150
L
ALA
151
n
149
ALA
151
L
ASP
152
n
150
ASP
152
L
SER
153
n
151
SER
153
L
SER
154
n
152
SER
154
L
PRO
155
n
153
PRO
155
L
VAL
156
n
154
VAL
156
L
LYS
157
n
155
LYS
157
L
ALA
158
n
156
ALA
158
L
GLY
159
n
157
GLY
159
L
VAL
160
n
158
VAL
160
L
GLU
161
n
159
GLU
161
L
THR
162
n
160
THR
162
L
THR
163
n
161
THR
163
L
THR
164
n
162
THR
164
L
PRO
165
n
163
PRO
165
L
SER
166
n
164
SER
166
L
LYS
167
n
165
LYS
167
L
GLN
168
n
166
GLN
168
L
SER
169
n
167
SER
169
L
ASN
170
n
168
ASN
170
L
ASN
171
n
169
ASN
171
L
LYS
172
n
170
LYS
172
L
TYR
173
n
171
TYR
173
L
ALA
174
n
172
ALA
174
L
ALA
175
n
173
ALA
175
L
SER
176
n
174
SER
176
L
SER
177
n
175
SER
177
L
TYR
178
n
176
TYR
178
L
LEU
179
n
177
LEU
179
L
SER
180
n
178
SER
180
L
LEU
181
n
179
LEU
181
L
THR
182
n
180
THR
182
L
PRO
183
n
181
PRO
183
L
GLU
184
n
182
GLU
184
L
GLN
185
n
183
GLN
185
L
TRP
186
n
184
TRP
186
L
LYS
187
n
185
LYS
187
L
SER
188
n
186
SER
188
L
HIS
189
n
187
HIS
189
L
ARG
190
n
188
ARG
190
L
SER
191
n
189
SER
191
L
TYR
192
n
190
TYR
192
L
SER
193
n
191
SER
193
L
CYS
194
n
192
CYS
194
L
GLN
195
n
193
GLN
195
L
VAL
196
n
194
VAL
196
L
THR
197
n
195
THR
197
L
HIS
198
n
196
HIS
198
L
GLU
199
n
197
GLU
199
L
GLY
200
n
198
GLY
200
L
SER
201
n
199
SER
201
L
THR
202
n
200
THR
202
L
VAL
203
n
201
VAL
203
L
GLU
204
n
202
GLU
204
L
LYS
205
n
203
LYS
205
L
THR
206
n
204
THR
206
L
VAL
207
n
205
VAL
207
L
ALA
208
n
206
ALA
208
L
PRO
209
n
207
PRO
209
L
n
208
210
L
n
209
211
L
n
210
212
L
n
211
213
L
4.7689
-0.8620
-1.5988
2.5196
-0.5474
2.4136
-0.0435
-0.2209
-0.1148
0.0572
0.0406
-0.0512
0.1255
0.1542
0.0073
0.1922
-0.0202
-0.0182
0.1453
-0.0115
0.1066
refined
-29.1052
-1.1426
-28.2499
X-RAY DIFFRACTION
2.5366
-1.1881
0.7671
0.9378
-0.6337
0.4640
0.0227
0.1912
0.0572
-0.0372
-0.0892
-0.0505
0.0653
0.1001
0.0646
0.2266
-0.0165
0.0049
0.1612
-0.0214
0.1292
refined
-14.1242
-2.6627
-21.3212
X-RAY DIFFRACTION
1.6961
-2.4105
1.8219
3.8097
-2.0844
2.3349
0.0004
-0.0734
-0.0244
0.4190
0.3505
-0.1511
-0.2185
-0.1096
-0.0971
0.2223
0.0203
0.0466
0.2215
-0.0469
0.2031
refined
-32.7908
6.3410
-0.1661
X-RAY DIFFRACTION
1.7111
-1.1835
0.9197
2.3118
-0.9546
2.2986
0.0899
-0.2240
-0.4125
-0.0495
0.1693
0.4073
0.2320
-0.2281
-0.2571
0.2071
0.0042
-0.0008
0.2009
0.0427
0.2884
refined
-38.5691
-0.4617
-10.3279
X-RAY DIFFRACTION
1.1178
-1.4467
1.2945
2.7056
-1.1757
1.9606
-0.0859
-0.2303
0.0278
0.0931
0.1678
0.1243
-0.0261
-0.1083
-0.1161
0.1902
-0.0376
0.0327
0.2193
0.0399
0.2713
refined
-36.8679
7.1838
-7.7261
X-RAY DIFFRACTION
3.2976
-0.3824
-0.4374
0.5793
0.2741
0.1476
-0.0408
-0.2774
-0.0700
0.1612
-0.0227
0.2147
0.1045
0.0732
0.0974
0.2782
-0.0088
0.0075
0.2008
0.0290
0.1971
refined
-17.8283
-4.8439
-0.6332
X-RAY DIFFRACTION
3.1674
1.2101
-0.7462
3.6048
-0.6259
1.7857
-0.0130
-0.0611
0.0936
-0.1689
-0.0719
-0.2227
-0.1490
0.0491
0.0436
0.1651
0.0318
0.0095
0.1891
0.0104
0.1530
refined
-5.1258
0.8713
-8.4189
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'H' and (resid 1 through 51 )
X-RAY DIFFRACTION
2
chain 'H' and (resid 52 through 213 )
X-RAY DIFFRACTION
3
chain 'L' and (resid 10 through 30 )
X-RAY DIFFRACTION
4
chain 'L' and (resid 31 through 61 )
X-RAY DIFFRACTION
5
chain 'L' and (resid 62 through 98 )
X-RAY DIFFRACTION
6
chain 'L' and (resid 99 through 119 )
X-RAY DIFFRACTION
7
chain 'L' and (resid 120 through 209 )
author_and_software_defined_assembly
PISA
2
dimeric
5880
5
21650
H
ASN
105
GLYCOSYLATION SITE
A
ASN
124
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
GLN
3
A
N
GLN
3
H
O
SER
25
A
O
SER
25
H
N
LEU
18
A
N
LEU
18
H
O
LEU
82
A
O
LEU
82
H
O
SER
79
A
O
SER
79
H
N
SER
70
A
N
SER
70
H
O
ASN
58
A
O
ASN
58
H
N
TYR
50
A
N
TYR
50
H
O
GLU
46
A
O
GLU
46
H
N
ARG
38
A
N
ARG
38
H
N
ILE
37
A
N
ILE
37
H
O
TYR
91
A
O
TYR
94
H
N
LEU
96
A
N
LEU
99
O
H
O
TYR
100
A
O
TYR
118
H
O
ASN
58
A
O
ASN
58
H
N
TYR
50
A
N
TYR
50
H
O
GLU
46
A
O
GLU
46
H
N
ARG
38
A
N
ARG
38
H
N
ILE
37
A
N
ILE
37
H
O
TYR
91
A
O
TYR
94
H
N
GLY
88
A
N
GLY
91
H
O
VAL
109
A
O
VAL
128
L
N
ILE
11
B
N
ILE
3
L
O
THR
105
B
O
THR
103
L
O
THR
102
B
O
THR
100
L
N
TYR
86
B
N
TYR
81
L
O
TYR
87
B
O
TYR
82
L
N
TYR
36
B
N
TYR
28
L
N
TRP
35
B
N
TRP
27
L
O
ILE
48
B
O
ILE
40
L
N
ALA
19
B
N
ALA
11
L
O
ILE
75
B
O
ILE
70
L
O
THR
74
B
O
THR
69
L
N
SER
63
B
N
SER
55
L
N
THR
117
B
N
THR
115
L
O
LEU
136
B
O
LEU
134
L
N
ILE
137
B
N
ILE
135
L
O
ALA
175
B
O
ALA
173
L
O
TYR
178
B
O
TYR
176
L
N
GLU
161
B
N
GLU
159
L
N
THR
117
B
N
THR
115
L
O
LEU
136
B
O
LEU
134
L
N
ILE
137
B
N
ILE
135
L
O
ALA
175
B
O
ALA
173
L
O
ALA
174
B
O
ALA
172
L
N
SER
166
B
N
SER
164
L
O
SER
154
B
O
SER
152
L
N
ALA
151
B
N
ALA
149
L
N
ALA
148
B
N
ALA
146
L
O
GLN
195
B
O
GLN
193
L
N
VAL
196
B
N
VAL
194
L
O
VAL
203
B
O
VAL
201
1
H
SER
127
A
SER
146
1
Y
1
H
SER
128
A
SER
147
1
Y
1
H
LYS
129
A
LYS
148
1
Y
1
H
SER
130
A
SER
149
1
Y
1
H
THR
131
A
THR
150
1
Y
1
H
LYS
214
A
LYS
233
1
Y
1
H
SER
215
A
SER
234
1
Y
1
H
CYS
216
A
CYS
235
1
Y
1
H
ASP
217
A
ASP
236
1
Y
1
H
LYS
218
A
LYS
237
1
Y
1
H
THR
219
A
THR
238
1
Y
1
H
HIS
220
A
HIS
239
1
Y
1
H
HIS
221
A
HIS
240
1
Y
1
H
HIS
222
A
HIS
241
1
Y
1
H
HIS
223
A
HIS
242
1
Y
1
H
HIS
224
A
HIS
243
1
Y
1
H
HIS
225
A
HIS
244
1
Y
1
L
SER
9
B
SER
1
1
Y
1
L
THR
210
B
THR
208
1
Y
1
L
GLU
211
B
GLU
209
1
Y
1
L
CYS
212
B
CYS
210
1
Y
1
L
SER
213
B
SER
211
1
Y
1
L
ASN
51
76.37
-58.60
1
L
ASP
152
54.81
-114.23
32.26
0.2490
0.2010
0.2031
2.400
38.656
834
17535
16831
4.96
95.99
1.000
0.000
0.32
1
1.35
MOLECULAR REPLACEMENT
24.93
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
2.400
38.656
146
3558
141
0
3271
0.006
3497
0.949
4771
12.942
1269
0.053
559
0.005
590
0.3508
0.2564
2.5505
145
2686
99.00
0.3350
0.2497
2.7474
141
2704
98.00
0.2810
0.2317
3.0237
140
2695
99.00
0.2413
0.2090
3.4610
139
2634
96.00
0.2228
0.1707
4.3596
131
2621
93.00
0.1808
0.1760
38.6611
138
2657
91.00
2.209
38.656
4FQC
20621
-3.000
0.16100
1
8.7000
5.300
92.2
0.69100
2.21
2.33
1.100
0.69100
1
4.60
65.4
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2010/01/06
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.16
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1069
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data scaling
XSCALE
Fab heavy chain, Fab light chain
Crystal Structure of PGT121 Fab Bound to a complex-type sialylated N-glycan
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
H
SER
28
A
SER
28
HELX_P
H
SER
32
A
SER
32
5
1
5
H
THR
83
A
THR
86
HELX_P
H
SER
87
A
SER
90
5
2
5
H
ILE
100
A
ILE
107
HELX_P
H
ASN
100
A
ASN
111
5
3
5
D
H
H
SER
156
A
SER
175
HELX_P
H
ALA
158
A
ALA
177
5
4
3
H
SER
187
A
SER
206
HELX_P
H
GLN
192
A
GLN
211
1
5
6
H
LYS
201
A
LYS
220
HELX_P
H
ASN
204
A
ASN
223
5
6
4
L
GLU
79
B
GLU
74
HELX_P
L
GLU
83
B
GLU
78
5
7
5
L
SER
122
B
SER
120
HELX_P
L
ALA
128
B
ALA
126
1
8
7
L
THR
182
B
THR
180
HELX_P
L
HIS
189
B
HIS
187
1
9
8
disulf
2.037
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
92
A
SG
CYS
95
1_555
disulf
2.029
H
CYS
140
A
SG
CYS
159
1_555
H
CYS
196
A
SG
CYS
215
1_555
disulf
2.033
L
CYS
23
B
SG
CYS
15
1_555
L
CYS
88
B
SG
CYS
83
1_555
disulf
2.029
L
CYS
135
B
SG
CYS
133
1_555
L
CYS
194
B
SG
CYS
192
1_555
covale
1.267
one
N-Glycosylation
H
ASN
105
A
ND2
ASN
124
1_555
A
NAG
1
C
C1
NAG
1_555
covale
1.475
both
A
NAG
1
C
O4
NAG
1_555
A
NAG
2
C
C1
NAG
1_555
covale
1.419
both
A
NAG
1
C
O6
NAG
1_555
A
FUC
10
C
C1
FUC
1_555
covale
1.388
both
A
NAG
2
C
O4
NAG
1_555
A
BMA
3
C
C1
BMA
1_555
covale
1.356
both
A
BMA
3
C
O3
BMA
1_555
A
MAN
4
C
C1
MAN
1_555
covale
1.434
both
A
BMA
3
C
O6
BMA
1_555
A
MAN
8
C
C1
MAN
1_555
covale
1.422
both
A
MAN
4
C
O2
MAN
1_555
A
NAG
5
C
C1
NAG
1_555
covale
1.364
both
A
NAG
5
C
O4
NAG
1_555
A
GAL
6
C
C1
GAL
1_555
covale
1.285
both
A
GAL
6
C
O6
GAL
1_555
A
SIA
7
C
C2
SIA
1_555
covale
1.436
both
A
MAN
8
C
O2
MAN
1_555
A
NAG
9
C
C1
NAG
1_555
IMMUNE SYSTEM
IG FOLD, ANTI HIV, ANTIBODY, IMMUNE SYSTEM
H
PHE
146
A
PHE
165
1
H
PRO
147
A
PRO
166
0.15
H
GLU
148
A
GLU
167
1
H
PRO
149
A
PRO
168
-3.12
L
SER
66
B
SER
60
B
C
1
L
PRO
66
B
PRO
61
-1.05
L
TYR
141
B
TYR
139
1
L
PRO
142
B
PRO
140
1.48
4FQC
PDB
1
1
4FQC
QMQLQESGPGLVKPSETLSLTCSVSGASISDSYWSWIRRSPGKGLEWIGYVHKSGDTNYSPSLKSRVNLSLDTSKNQVSL
SLVAATAADSGKYYCARTLHGRRIYGIVAFNEWFTYFYMDVWGNGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL
VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHH
HHHH
4FQC
PDB
2
1
4FQC
SDISVAPGETARISCGEKSLGSRAVQWYQHRAGQAPSLIIYNNQDRPSGIPERFSGSPDSPFGTTATLTITSVEAGDEAD
YYCHIWDSRVPTKWVFGGGTTLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET
TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
1
224
4FQC
1
224
4FQC
H
1
1
243
9
213
4FQC
9
213
4FQC
L
2
1
211
4
5
5
4
4
5
3
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
A
GLN
3
H
SER
7
A
SER
7
H
LEU
18
A
LEU
18
H
SER
25
A
SER
25
H
GLN
77
A
GLN
77
H
LEU
82
A
LEU
82
H
VAL
67
A
VAL
67
H
ASP
72
A
ASP
72
H
ASN
58
A
ASN
58
H
TYR
59
A
TYR
59
H
LEU
45
A
LEU
45
H
VAL
51
A
VAL
51
H
TYR
33
A
TYR
33
H
ARG
39
A
ARG
39
H
GLY
88
A
GLY
91
H
ILE
100
A
ILE
104
A
H
TRP
100
A
TRP
113
H
TRP
103
A
TRP
122
J
H
ASN
58
A
ASN
58
H
TYR
59
A
TYR
59
H
LEU
45
A
LEU
45
H
VAL
51
A
VAL
51
H
TYR
33
A
TYR
33
H
ARG
39
A
ARG
39
H
GLY
88
A
GLY
91
H
ILE
100
A
ILE
104
A
H
THR
107
A
THR
126
H
VAL
109
A
VAL
128
H
SER
120
A
SER
139
H
LEU
124
A
LEU
143
H
SER
120
A
SER
139
H
LEU
124
A
LEU
143
L
ILE
11
B
ILE
3
L
VAL
13
B
VAL
5
L
GLY
99
B
GLY
97
L
VAL
106
B
VAL
104
L
ASP
85
B
ASP
80
L
HIS
89
B
HIS
84
L
GLN
34
B
GLN
26
L
HIS
38
B
HIS
30
L
SER
45
B
SER
37
L
ILE
48
B
ILE
40
L
ALA
19
B
ALA
11
L
CYS
23
B
CYS
15
L
ALA
71
B
ALA
66
L
ILE
75
B
ILE
70
L
PHE
62
B
PHE
54
L
GLY
64
B
GLY
56
L
SER
115
B
SER
113
L
PHE
119
B
PHE
117
L
ALA
131
B
ALA
129
L
PHE
140
B
PHE
138
L
TYR
173
B
TYR
171
L
LEU
181
B
LEU
179
L
VAL
160
B
VAL
158
L
THR
162
B
THR
160
L
SER
115
B
SER
113
L
PHE
119
B
PHE
117
L
ALA
131
B
ALA
129
L
PHE
140
B
PHE
138
L
TYR
173
B
TYR
171
L
LEU
181
B
LEU
179
L
SER
166
B
SER
164
L
LYS
167
B
LYS
165
L
SER
154
B
SER
152
L
VAL
156
B
VAL
154
L
THR
146
B
THR
144
L
ALA
151
B
ALA
149
L
TYR
192
B
TYR
190
L
HIS
198
B
HIS
196
L
SER
201
B
SER
199
L
VAL
207
B
VAL
205
19
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