0.018149
0.000000
0.000000
0.000000
0.019084
0.000000
0.000000
0.000000
0.012461
0.00000
0.00000
0.00000
Kang, Y.N.
Stuckey, J.A.
Nienaber, V.
Giranda, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
55.100
52.400
80.250
C18 H15 N3 O
289.331
6-[(Z)-AMINO(IMINO)METHYL]-N-PHENYL-2-NAPHTHAMIDE
6-(N-PHENYLCARBAMYL)-2-NAPHTHALENECARBOXAMIDINE
non-polymer
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H6 O4
118.088
SUCCINIC ACID
non-polymer
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal Structure of the Urokinase
160
1
IMAGE PLATE
RIGAKU RAXIS II
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
27715.600
Urokinase-type plasminogen activator
3.4.21.73
1
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
118.088
SUCCINIC ACID
1
syn
non-polymer
92.094
GLYCEROL
6
syn
non-polymer
59.044
ACETATE ION
2
syn
non-polymer
289.331
6-[(Z)-AMINO(IMINO)METHYL]-N-PHENYL-2-NAPHTHAMIDE
1
syn
non-polymer
18.015
water
334
nat
water
U-plasminogen activator, uPA, Urokinase-type plasminogen activator long chain A, Urokinase-type plasminogen activator short chain A, Urokinase-type plasminogen activator chain B
no
no
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTK
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PLAU
9606
Homo sapiens
562
Escherichia coli
1
2.09
41.15
VAPOR DIFFUSION, HANGING DROP
0.15 M Li2SO4, 20% polyethylene glycol MW 4000 in succinate buffer, pH 4.8-6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291 - 298.0K
4.8-6.0
298.0
software
repository
Initial release
Refinement description
1
0
2012-08-22
1
1
2017-11-15
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
RCSB
Y
RCSB
2012-06-28
REL
REL
SO4
SULFATE ION
SIN
SUCCINIC ACID
GOL
GLYCEROL
ACT
ACETATE ION
675
6-[(Z)-AMINO(IMINO)METHYL]-N-PHENYL-2-NAPHTHAMIDE
HOH
water
SO4
1
2
SO4
SO4
301
A
SO4
2
2
SO4
SO4
302
A
SO4
4
2
SO4
SO4
303
A
SIN
1
3
SIN
SIN
304
A
GOL
1
4
GOL
GOL
305
A
GOL
2
4
GOL
GOL
306
A
GOL
3
4
GOL
GOL
307
A
GOL
4
4
GOL
GOL
308
A
GOL
5
4
GOL
GOL
309
A
GOL
6
4
GOL
GOL
310
A
ACT
1
5
ACT
ACT
311
A
ACT
2
5
ACT
ACT
312
A
675
1
6
675
675
313
A
HOH
1
7
HOH
HOH
401
A
HOH
2
7
HOH
HOH
402
A
HOH
3
7
HOH
HOH
403
A
HOH
4
7
HOH
HOH
404
A
HOH
5
7
HOH
HOH
405
A
HOH
6
7
HOH
HOH
406
A
HOH
8
7
HOH
HOH
407
A
HOH
9
7
HOH
HOH
408
A
HOH
10
7
HOH
HOH
409
A
HOH
11
7
HOH
HOH
410
A
HOH
12
7
HOH
HOH
411
A
HOH
13
7
HOH
HOH
412
A
HOH
14
7
HOH
HOH
413
A
HOH
15
7
HOH
HOH
414
A
HOH
16
7
HOH
HOH
415
A
HOH
17
7
HOH
HOH
416
A
HOH
18
7
HOH
HOH
417
A
HOH
19
7
HOH
HOH
418
A
HOH
20
7
HOH
HOH
419
A
HOH
21
7
HOH
HOH
420
A
HOH
22
7
HOH
HOH
421
A
HOH
23
7
HOH
HOH
422
A
HOH
24
7
HOH
HOH
423
A
HOH
25
7
HOH
HOH
424
A
HOH
26
7
HOH
HOH
425
A
HOH
27
7
HOH
HOH
426
A
HOH
28
7
HOH
HOH
427
A
HOH
29
7
HOH
HOH
428
A
HOH
30
7
HOH
HOH
429
A
HOH
32
7
HOH
HOH
430
A
HOH
33
7
HOH
HOH
431
A
HOH
34
7
HOH
HOH
432
A
HOH
35
7
HOH
HOH
433
A
HOH
36
7
HOH
HOH
434
A
HOH
37
7
HOH
HOH
435
A
HOH
38
7
HOH
HOH
436
A
HOH
39
7
HOH
HOH
437
A
HOH
40
7
HOH
HOH
438
A
HOH
41
7
HOH
HOH
439
A
HOH
42
7
HOH
HOH
440
A
HOH
43
7
HOH
HOH
441
A
HOH
44
7
HOH
HOH
442
A
HOH
45
7
HOH
HOH
443
A
HOH
46
7
HOH
HOH
444
A
HOH
47
7
HOH
HOH
445
A
HOH
48
7
HOH
HOH
446
A
HOH
49
7
HOH
HOH
447
A
HOH
50
7
HOH
HOH
448
A
HOH
51
7
HOH
HOH
449
A
HOH
52
7
HOH
HOH
450
A
HOH
53
7
HOH
HOH
451
A
HOH
54
7
HOH
HOH
452
A
HOH
55
7
HOH
HOH
453
A
HOH
56
7
HOH
HOH
454
A
HOH
57
7
HOH
HOH
455
A
HOH
58
7
HOH
HOH
456
A
HOH
59
7
HOH
HOH
457
A
HOH
60
7
HOH
HOH
458
A
HOH
61
7
HOH
HOH
459
A
HOH
62
7
HOH
HOH
460
A
HOH
63
7
HOH
HOH
461
A
HOH
64
7
HOH
HOH
462
A
HOH
65
7
HOH
HOH
463
A
HOH
66
7
HOH
HOH
464
A
HOH
67
7
HOH
HOH
465
A
HOH
69
7
HOH
HOH
466
A
HOH
70
7
HOH
HOH
467
A
HOH
71
7
HOH
HOH
468
A
HOH
72
7
HOH
HOH
469
A
HOH
73
7
HOH
HOH
470
A
HOH
74
7
HOH
HOH
471
A
HOH
76
7
HOH
HOH
472
A
HOH
77
7
HOH
HOH
473
A
HOH
78
7
HOH
HOH
474
A
HOH
79
7
HOH
HOH
475
A
HOH
80
7
HOH
HOH
476
A
HOH
81
7
HOH
HOH
477
A
HOH
82
7
HOH
HOH
478
A
HOH
83
7
HOH
HOH
479
A
HOH
84
7
HOH
HOH
480
A
HOH
85
7
HOH
HOH
481
A
HOH
86
7
HOH
HOH
482
A
HOH
87
7
HOH
HOH
483
A
HOH
88
7
HOH
HOH
484
A
HOH
90
7
HOH
HOH
485
A
HOH
91
7
HOH
HOH
486
A
HOH
92
7
HOH
HOH
487
A
HOH
93
7
HOH
HOH
488
A
HOH
94
7
HOH
HOH
489
A
HOH
95
7
HOH
HOH
490
A
HOH
96
7
HOH
HOH
491
A
HOH
97
7
HOH
HOH
492
A
HOH
98
7
HOH
HOH
493
A
HOH
99
7
HOH
HOH
494
A
HOH
100
7
HOH
HOH
495
A
HOH
101
7
HOH
HOH
496
A
HOH
102
7
HOH
HOH
497
A
HOH
103
7
HOH
HOH
498
A
HOH
104
7
HOH
HOH
499
A
HOH
105
7
HOH
HOH
500
A
HOH
106
7
HOH
HOH
501
A
HOH
107
7
HOH
HOH
502
A
HOH
108
7
HOH
HOH
503
A
HOH
109
7
HOH
HOH
504
A
HOH
110
7
HOH
HOH
505
A
HOH
111
7
HOH
HOH
506
A
HOH
112
7
HOH
HOH
507
A
HOH
113
7
HOH
HOH
508
A
HOH
114
7
HOH
HOH
509
A
HOH
115
7
HOH
HOH
510
A
HOH
116
7
HOH
HOH
511
A
HOH
117
7
HOH
HOH
512
A
HOH
118
7
HOH
HOH
513
A
HOH
119
7
HOH
HOH
514
A
HOH
120
7
HOH
HOH
515
A
HOH
121
7
HOH
HOH
516
A
HOH
122
7
HOH
HOH
517
A
HOH
123
7
HOH
HOH
518
A
HOH
125
7
HOH
HOH
519
A
HOH
126
7
HOH
HOH
520
A
HOH
127
7
HOH
HOH
521
A
HOH
129
7
HOH
HOH
522
A
HOH
130
7
HOH
HOH
523
A
HOH
131
7
HOH
HOH
524
A
HOH
132
7
HOH
HOH
525
A
HOH
133
7
HOH
HOH
526
A
HOH
134
7
HOH
HOH
527
A
HOH
135
7
HOH
HOH
528
A
HOH
136
7
HOH
HOH
529
A
HOH
137
7
HOH
HOH
530
A
HOH
138
7
HOH
HOH
531
A
HOH
139
7
HOH
HOH
532
A
HOH
140
7
HOH
HOH
533
A
HOH
141
7
HOH
HOH
534
A
HOH
142
7
HOH
HOH
535
A
HOH
145
7
HOH
HOH
536
A
HOH
146
7
HOH
HOH
537
A
HOH
148
7
HOH
HOH
538
A
HOH
149
7
HOH
HOH
539
A
HOH
150
7
HOH
HOH
540
A
HOH
151
7
HOH
HOH
541
A
HOH
152
7
HOH
HOH
542
A
HOH
153
7
HOH
HOH
543
A
HOH
154
7
HOH
HOH
544
A
HOH
155
7
HOH
HOH
545
A
HOH
156
7
HOH
HOH
546
A
HOH
158
7
HOH
HOH
547
A
HOH
159
7
HOH
HOH
548
A
HOH
160
7
HOH
HOH
549
A
HOH
161
7
HOH
HOH
550
A
HOH
162
7
HOH
HOH
551
A
HOH
163
7
HOH
HOH
552
A
HOH
164
7
HOH
HOH
553
A
HOH
165
7
HOH
HOH
554
A
HOH
166
7
HOH
HOH
555
A
HOH
167
7
HOH
HOH
556
A
HOH
168
7
HOH
HOH
557
A
HOH
169
7
HOH
HOH
558
A
HOH
170
7
HOH
HOH
559
A
HOH
171
7
HOH
HOH
560
A
HOH
174
7
HOH
HOH
561
A
HOH
175
7
HOH
HOH
562
A
HOH
176
7
HOH
HOH
563
A
HOH
177
7
HOH
HOH
564
A
HOH
178
7
HOH
HOH
565
A
HOH
179
7
HOH
HOH
566
A
HOH
180
7
HOH
HOH
567
A
HOH
181
7
HOH
HOH
568
A
HOH
182
7
HOH
HOH
569
A
HOH
183
7
HOH
HOH
570
A
HOH
184
7
HOH
HOH
571
A
HOH
185
7
HOH
HOH
572
A
HOH
186
7
HOH
HOH
573
A
HOH
187
7
HOH
HOH
574
A
HOH
188
7
HOH
HOH
575
A
HOH
189
7
HOH
HOH
576
A
HOH
190
7
HOH
HOH
577
A
HOH
191
7
HOH
HOH
578
A
HOH
192
7
HOH
HOH
579
A
HOH
193
7
HOH
HOH
580
A
HOH
194
7
HOH
HOH
581
A
HOH
195
7
HOH
HOH
582
A
HOH
196
7
HOH
HOH
583
A
HOH
197
7
HOH
HOH
584
A
HOH
198
7
HOH
HOH
585
A
HOH
199
7
HOH
HOH
586
A
HOH
200
7
HOH
HOH
587
A
HOH
203
7
HOH
HOH
588
A
HOH
204
7
HOH
HOH
589
A
HOH
205
7
HOH
HOH
590
A
HOH
206
7
HOH
HOH
591
A
HOH
207
7
HOH
HOH
592
A
HOH
208
7
HOH
HOH
593
A
HOH
210
7
HOH
HOH
594
A
HOH
211
7
HOH
HOH
595
A
HOH
212
7
HOH
HOH
596
A
HOH
213
7
HOH
HOH
597
A
HOH
214
7
HOH
HOH
598
A
HOH
216
7
HOH
HOH
599
A
HOH
217
7
HOH
HOH
600
A
HOH
218
7
HOH
HOH
601
A
HOH
219
7
HOH
HOH
602
A
HOH
220
7
HOH
HOH
603
A
HOH
221
7
HOH
HOH
604
A
HOH
222
7
HOH
HOH
605
A
HOH
223
7
HOH
HOH
606
A
HOH
224
7
HOH
HOH
607
A
HOH
225
7
HOH
HOH
608
A
HOH
226
7
HOH
HOH
609
A
HOH
227
7
HOH
HOH
610
A
HOH
228
7
HOH
HOH
611
A
HOH
229
7
HOH
HOH
612
A
HOH
230
7
HOH
HOH
613
A
HOH
231
7
HOH
HOH
614
A
HOH
232
7
HOH
HOH
615
A
HOH
233
7
HOH
HOH
616
A
HOH
234
7
HOH
HOH
617
A
HOH
235
7
HOH
HOH
618
A
HOH
236
7
HOH
HOH
619
A
HOH
237
7
HOH
HOH
620
A
HOH
238
7
HOH
HOH
621
A
HOH
239
7
HOH
HOH
622
A
HOH
240
7
HOH
HOH
623
A
HOH
241
7
HOH
HOH
624
A
HOH
242
7
HOH
HOH
625
A
HOH
243
7
HOH
HOH
626
A
HOH
244
7
HOH
HOH
627
A
HOH
245
7
HOH
HOH
628
A
HOH
246
7
HOH
HOH
629
A
HOH
247
7
HOH
HOH
630
A
HOH
249
7
HOH
HOH
631
A
HOH
250
7
HOH
HOH
632
A
HOH
251
7
HOH
HOH
633
A
HOH
252
7
HOH
HOH
634
A
HOH
253
7
HOH
HOH
635
A
HOH
255
7
HOH
HOH
636
A
HOH
257
7
HOH
HOH
637
A
HOH
258
7
HOH
HOH
638
A
HOH
259
7
HOH
HOH
639
A
HOH
260
7
HOH
HOH
640
A
HOH
261
7
HOH
HOH
641
A
HOH
262
7
HOH
HOH
642
A
HOH
265
7
HOH
HOH
643
A
HOH
266
7
HOH
HOH
644
A
HOH
267
7
HOH
HOH
645
A
HOH
268
7
HOH
HOH
646
A
HOH
269
7
HOH
HOH
647
A
HOH
270
7
HOH
HOH
648
A
HOH
271
7
HOH
HOH
649
A
HOH
272
7
HOH
HOH
650
A
HOH
273
7
HOH
HOH
651
A
HOH
274
7
HOH
HOH
652
A
HOH
275
7
HOH
HOH
653
A
HOH
276
7
HOH
HOH
654
A
HOH
277
7
HOH
HOH
655
A
HOH
278
7
HOH
HOH
656
A
HOH
279
7
HOH
HOH
657
A
HOH
280
7
HOH
HOH
658
A
HOH
281
7
HOH
HOH
659
A
HOH
282
7
HOH
HOH
660
A
HOH
283
7
HOH
HOH
661
A
HOH
284
7
HOH
HOH
662
A
HOH
285
7
HOH
HOH
663
A
HOH
286
7
HOH
HOH
664
A
HOH
287
7
HOH
HOH
665
A
HOH
288
7
HOH
HOH
666
A
HOH
289
7
HOH
HOH
667
A
HOH
290
7
HOH
HOH
668
A
HOH
291
7
HOH
HOH
669
A
HOH
292
7
HOH
HOH
670
A
HOH
293
7
HOH
HOH
671
A
HOH
294
7
HOH
HOH
672
A
HOH
296
7
HOH
HOH
673
A
HOH
297
7
HOH
HOH
674
A
HOH
298
7
HOH
HOH
675
A
HOH
300
7
HOH
HOH
676
A
HOH
301
7
HOH
HOH
677
A
HOH
302
7
HOH
HOH
678
A
HOH
303
7
HOH
HOH
679
A
HOH
305
7
HOH
HOH
680
A
HOH
306
7
HOH
HOH
681
A
HOH
307
7
HOH
HOH
682
A
HOH
308
7
HOH
HOH
683
A
HOH
309
7
HOH
HOH
684
A
HOH
310
7
HOH
HOH
685
A
HOH
311
7
HOH
HOH
686
A
HOH
313
7
HOH
HOH
687
A
HOH
314
7
HOH
HOH
688
A
HOH
316
7
HOH
HOH
689
A
HOH
317
7
HOH
HOH
690
A
HOH
318
7
HOH
HOH
691
A
HOH
319
7
HOH
HOH
692
A
HOH
320
7
HOH
HOH
693
A
HOH
321
7
HOH
HOH
694
A
HOH
322
7
HOH
HOH
695
A
HOH
324
7
HOH
HOH
696
A
HOH
325
7
HOH
HOH
697
A
HOH
326
7
HOH
HOH
698
A
HOH
328
7
HOH
HOH
699
A
HOH
329
7
HOH
HOH
700
A
HOH
330
7
HOH
HOH
701
A
HOH
331
7
HOH
HOH
702
A
HOH
332
7
HOH
HOH
703
A
HOH
333
7
HOH
HOH
704
A
HOH
334
7
HOH
HOH
705
A
HOH
335
7
HOH
HOH
706
A
HOH
336
7
HOH
HOH
707
A
HOH
337
7
HOH
HOH
708
A
HOH
338
7
HOH
HOH
709
A
HOH
339
7
HOH
HOH
710
A
HOH
340
7
HOH
HOH
711
A
HOH
341
7
HOH
HOH
712
A
HOH
342
7
HOH
HOH
713
A
HOH
343
7
HOH
HOH
714
A
HOH
344
7
HOH
HOH
715
A
HOH
345
7
HOH
HOH
716
A
HOH
346
7
HOH
HOH
717
A
HOH
347
7
HOH
HOH
718
A
HOH
348
7
HOH
HOH
719
A
HOH
349
7
HOH
HOH
720
A
HOH
350
7
HOH
HOH
721
A
HOH
351
7
HOH
HOH
722
A
HOH
352
7
HOH
HOH
723
A
HOH
353
7
HOH
HOH
724
A
HOH
354
7
HOH
HOH
725
A
HOH
355
7
HOH
HOH
726
A
HOH
356
7
HOH
HOH
727
A
HOH
357
7
HOH
HOH
728
A
HOH
358
7
HOH
HOH
729
A
HOH
359
7
HOH
HOH
730
A
HOH
360
7
HOH
HOH
731
A
HOH
361
7
HOH
HOH
732
A
HOH
362
7
HOH
HOH
733
A
HOH
364
7
HOH
HOH
734
A
ILE
1
n
1
ILE
1
A
ILE
2
n
2
ILE
2
A
GLY
3
n
3
GLY
3
A
GLY
4
n
4
GLY
4
A
GLU
5
n
5
GLU
5
A
PHE
6
n
6
PHE
6
A
THR
7
n
7
THR
7
A
THR
8
n
8
THR
8
A
ILE
9
n
9
ILE
9
A
GLU
10
n
10
GLU
10
A
ASN
11
n
11
ASN
11
A
GLN
12
n
12
GLN
12
A
PRO
13
n
13
PRO
13
A
TRP
14
n
14
TRP
14
A
PHE
15
n
15
PHE
15
A
ALA
16
n
16
ALA
16
A
ALA
17
n
17
ALA
17
A
ILE
18
n
18
ILE
18
A
TYR
19
n
19
TYR
19
A
ARG
20
n
20
ARG
20
A
ARG
21
n
21
ARG
21
A
HIS
22
n
22
HIS
22
A
ARG
23
n
23
ARG
23
A
GLY
24
n
24
GLY
24
A
GLY
25
n
25
GLY
25
A
SER
26
n
26
SER
26
A
VAL
27
n
27
VAL
27
A
THR
28
n
28
THR
28
A
TYR
29
n
29
TYR
29
A
VAL
30
n
30
VAL
30
A
CYS
31
n
31
CYS
31
A
GLY
32
n
32
GLY
32
A
GLY
33
n
33
GLY
33
A
SER
34
n
34
SER
34
A
LEU
35
n
35
LEU
35
A
ILE
36
n
36
ILE
36
A
SER
37
n
37
SER
37
A
PRO
38
n
38
PRO
38
A
CYS
39
n
39
CYS
39
A
TRP
40
n
40
TRP
40
A
VAL
41
n
41
VAL
41
A
ILE
42
n
42
ILE
42
A
SER
43
n
43
SER
43
A
ALA
44
n
44
ALA
44
A
THR
45
n
45
THR
45
A
HIS
46
n
46
HIS
46
A
CYS
47
n
47
CYS
47
A
PHE
48
n
48
PHE
48
A
ILE
49
n
49
ILE
49
A
ASP
50
n
50
ASP
50
A
TYR
51
n
51
TYR
51
A
PRO
52
n
52
PRO
52
A
LYS
53
n
53
LYS
53
A
LYS
54
n
54
LYS
54
A
GLU
55
n
55
GLU
55
A
ASP
56
n
56
ASP
56
A
TYR
57
n
57
TYR
57
A
ILE
58
n
58
ILE
58
A
VAL
59
n
59
VAL
59
A
TYR
60
n
60
TYR
60
A
LEU
61
n
61
LEU
61
A
GLY
62
n
62
GLY
62
A
ARG
63
n
63
ARG
63
A
SER
64
n
64
SER
64
A
ARG
65
n
65
ARG
65
A
LEU
66
n
66
LEU
66
A
ASN
67
n
67
ASN
67
A
SER
68
n
68
SER
68
A
ASN
69
n
69
ASN
69
A
THR
70
n
70
THR
70
A
GLN
71
n
71
GLN
71
A
GLY
72
n
72
GLY
72
A
GLU
73
n
73
GLU
73
A
MET
74
n
74
MET
74
A
LYS
75
n
75
LYS
75
A
PHE
76
n
76
PHE
76
A
GLU
77
n
77
GLU
77
A
VAL
78
n
78
VAL
78
A
GLU
79
n
79
GLU
79
A
ASN
80
n
80
ASN
80
A
LEU
81
n
81
LEU
81
A
ILE
82
n
82
ILE
82
A
LEU
83
n
83
LEU
83
A
HIS
84
n
84
HIS
84
A
LYS
85
n
85
LYS
85
A
ASP
86
n
86
ASP
86
A
TYR
87
n
87
TYR
87
A
SER
88
n
88
SER
88
A
ALA
89
n
89
ALA
89
A
ASP
90
n
90
ASP
90
A
THR
91
n
91
THR
91
A
LEU
92
n
92
LEU
92
A
ALA
93
n
93
ALA
93
A
HIS
94
n
94
HIS
94
A
HIS
95
n
95
HIS
95
A
ASN
96
n
96
ASN
96
A
ASP
97
n
97
ASP
97
A
ILE
98
n
98
ILE
98
A
ALA
99
n
99
ALA
99
A
LEU
100
n
100
LEU
100
A
LEU
101
n
101
LEU
101
A
LYS
102
n
102
LYS
102
A
ILE
103
n
103
ILE
103
A
ARG
104
n
104
ARG
104
A
SER
105
n
105
SER
105
A
LYS
106
n
106
LYS
106
A
GLU
107
n
107
GLU
107
A
GLY
108
n
108
GLY
108
A
ARG
109
n
109
ARG
109
A
CYS
110
n
110
CYS
110
A
ALA
111
n
111
ALA
111
A
GLN
112
n
112
GLN
112
A
PRO
113
n
113
PRO
113
A
SER
114
n
114
SER
114
A
ARG
115
n
115
ARG
115
A
THR
116
n
116
THR
116
A
ILE
117
n
117
ILE
117
A
GLN
118
n
118
GLN
118
A
THR
119
n
119
THR
119
A
ILE
120
n
120
ILE
120
A
ALA
121
n
121
ALA
121
A
LEU
122
n
122
LEU
122
A
PRO
123
n
123
PRO
123
A
SER
124
n
124
SER
124
A
MET
125
n
125
MET
125
A
TYR
126
n
126
TYR
126
A
ASN
127
n
127
ASN
127
A
ASP
128
n
128
ASP
128
A
PRO
129
n
129
PRO
129
A
GLN
130
n
130
GLN
130
A
PHE
131
n
131
PHE
131
A
GLY
132
n
132
GLY
132
A
THR
133
n
133
THR
133
A
SER
134
n
134
SER
134
A
CYS
135
n
135
CYS
135
A
GLU
136
n
136
GLU
136
A
ILE
137
n
137
ILE
137
A
THR
138
n
138
THR
138
A
GLY
139
n
139
GLY
139
A
PHE
140
n
140
PHE
140
A
GLY
141
n
141
GLY
141
A
LYS
142
n
142
LYS
142
A
GLU
143
n
143
GLU
143
A
GLN
144
n
144
GLN
144
A
SER
145
n
145
SER
145
A
THR
146
n
146
THR
146
A
ASP
147
n
147
ASP
147
A
TYR
148
n
148
TYR
148
A
LEU
149
n
149
LEU
149
A
TYR
150
n
150
TYR
150
A
PRO
151
n
151
PRO
151
A
GLU
152
n
152
GLU
152
A
GLN
153
n
153
GLN
153
A
LEU
154
n
154
LEU
154
A
LYS
155
n
155
LYS
155
A
MET
156
n
156
MET
156
A
THR
157
n
157
THR
157
A
VAL
158
n
158
VAL
158
A
VAL
159
n
159
VAL
159
A
LYS
160
n
160
LYS
160
A
LEU
161
n
161
LEU
161
A
ILE
162
n
162
ILE
162
A
SER
163
n
163
SER
163
A
HIS
164
n
164
HIS
164
A
ARG
165
n
165
ARG
165
A
GLU
166
n
166
GLU
166
A
CYS
167
n
167
CYS
167
A
GLN
168
n
168
GLN
168
A
GLN
169
n
169
GLN
169
A
PRO
170
n
170
PRO
170
A
HIS
171
n
171
HIS
171
A
TYR
172
n
172
TYR
172
A
TYR
173
n
173
TYR
173
A
GLY
174
n
174
GLY
174
A
SER
175
n
175
SER
175
A
GLU
176
n
176
GLU
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
THR
179
n
179
THR
179
A
LYS
180
n
180
LYS
180
A
MET
181
n
181
MET
181
A
LEU
182
n
182
LEU
182
A
CYS
183
n
183
CYS
183
A
ALA
184
n
184
ALA
184
A
ALA
185
n
185
ALA
185
A
ASP
186
n
186
ASP
186
A
PRO
187
n
187
PRO
187
A
GLN
188
n
188
GLN
188
A
TRP
189
n
189
TRP
189
A
LYS
190
n
190
LYS
190
A
THR
191
n
191
THR
191
A
ASP
192
n
192
ASP
192
A
SER
193
n
193
SER
193
A
CYS
194
n
194
CYS
194
A
GLN
195
n
195
GLN
195
A
GLY
196
n
196
GLY
196
A
ASP
197
n
197
ASP
197
A
SER
198
n
198
SER
198
A
GLY
199
n
199
GLY
199
A
GLY
200
n
200
GLY
200
A
PRO
201
n
201
PRO
201
A
LEU
202
n
202
LEU
202
A
VAL
203
n
203
VAL
203
A
CYS
204
n
204
CYS
204
A
SER
205
n
205
SER
205
A
LEU
206
n
206
LEU
206
A
GLN
207
n
207
GLN
207
A
GLY
208
n
208
GLY
208
A
ARG
209
n
209
ARG
209
A
MET
210
n
210
MET
210
A
THR
211
n
211
THR
211
A
LEU
212
n
212
LEU
212
A
THR
213
n
213
THR
213
A
GLY
214
n
214
GLY
214
A
ILE
215
n
215
ILE
215
A
VAL
216
n
216
VAL
216
A
SER
217
n
217
SER
217
A
TRP
218
n
218
TRP
218
A
GLY
219
n
219
GLY
219
A
ARG
220
n
220
ARG
220
A
GLY
221
n
221
GLY
221
A
CYS
222
n
222
CYS
222
A
ALA
223
n
223
ALA
223
A
LEU
224
n
224
LEU
224
A
LYS
225
n
225
LYS
225
A
ASP
226
n
226
ASP
226
A
LYS
227
n
227
LYS
227
A
PRO
228
n
228
PRO
228
A
GLY
229
n
229
GLY
229
A
VAL
230
n
230
VAL
230
A
TYR
231
n
231
TYR
231
A
THR
232
n
232
THR
232
A
ARG
233
n
233
ARG
233
A
VAL
234
n
234
VAL
234
A
SER
235
n
235
SER
235
A
HIS
236
n
236
HIS
236
A
PHE
237
n
237
PHE
237
A
LEU
238
n
238
LEU
238
A
PRO
239
n
239
PRO
239
A
TRP
240
n
240
TRP
240
A
ILE
241
n
241
ILE
241
A
ARG
242
n
242
ARG
242
A
SER
243
n
243
SER
243
A
HIS
244
n
244
HIS
244
A
THR
245
n
245
THR
245
A
LYS
246
n
246
LYS
246
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
5
A
N
GLU
5
A
O
MET
156
A
O
MET
156
A
N
ILE
162
A
N
ILE
162
A
O
CYS
183
A
O
CYS
183
A
N
LEU
182
A
N
LEU
182
A
O
TYR
231
A
O
TYR
231
A
O
VAL
230
A
O
VAL
230
A
N
TRP
218
A
N
TRP
218
A
O
THR
211
A
O
THR
211
A
N
CYS
204
A
N
CYS
204
A
O
VAL
203
A
O
VAL
203
A
N
GLU
136
A
N
GLU
136
A
N
CYS
135
A
N
CYS
135
A
O
VAL
159
A
O
VAL
159
A
N
ILE
18
A
N
ILE
18
A
O
VAL
30
A
O
VAL
30
A
N
SER
34
A
N
SER
34
A
O
ILE
42
A
O
ILE
42
A
N
SER
43
A
N
SER
43
A
O
ALA
99
A
O
ALA
99
A
O
LEU
100
A
O
LEU
100
A
N
ILE
82
A
N
ILE
82
A
O
PHE
76
A
O
PHE
76
A
N
VAL
59
A
N
VAL
59
A
O
ILE
58
A
O
ILE
58
A
N
TYR
19
A
N
TYR
19
A
N
SER
88
A
N
SER
88
A
O
HIS
95
A
O
HIS
95
1
A
CG
ARG
23
A
CG
ARG
23
1
Y
1
A
CD
ARG
23
A
CD
ARG
23
1
Y
1
A
NE
ARG
23
A
NE
ARG
23
1
Y
1
A
CZ
ARG
23
A
CZ
ARG
23
1
Y
1
A
NH1
ARG
23
A
NH1
ARG
23
1
Y
1
A
NH2
ARG
23
A
NH2
ARG
23
1
Y
1
A
CG
GLN
71
A
CG
GLN
71
1
Y
1
A
CD
GLN
71
A
CD
GLN
71
1
Y
1
A
OE1
GLN
71
A
OE1
GLN
71
1
Y
1
A
NE2
GLN
71
A
NE2
GLN
71
1
Y
1
A
CG
LYS
85
A
CG
LYS
85
1
Y
1
A
CD
LYS
85
A
CD
LYS
85
1
Y
1
A
CE
LYS
85
A
CE
LYS
85
1
Y
1
A
NZ
LYS
85
A
NZ
LYS
85
1
Y
1
A
CG
ARG
209
A
CG
ARG
209
1
Y
1
A
CD
ARG
209
A
CD
ARG
209
1
Y
1
A
NE
ARG
209
A
NE
ARG
209
1
Y
1
A
CZ
ARG
209
A
CZ
ARG
209
1
Y
1
A
NH1
ARG
209
A
NH1
ARG
209
1
Y
1
A
NH2
ARG
209
A
NH2
ARG
209
1
Y
1
A
A
H3
O
ILE
HOH
1
407
1.48
1
A
A
H2
O
ILE
LYS
1
142
1.58
1
A
VAL
30
-108.70
-63.75
1
A
SER
43
-148.77
-154.97
1
A
TYR
172
-89.78
-113.47
1
A
SER
217
-123.57
-61.52
69.670
15.1059
3.000
-0.1362
0.0000
0.0000
1.0330
0.0000
-0.8967
0.9601
0.9511
0.1820
0.1504
0.1520
1.6000
18.9900
1535
30696
5.0000
97.9700
1.000
0.300
0.1010
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.130
1.6000
18.9900
334
2345
89
0
1922
866
SINUSOIDAL
2.000
43
HARMONIC
2.000
642
HARMONIC
5.000
4001
HARMONIC
20.000
4
SEMIHARMONIC
5.000
267
SEMIHARMONIC
5.000
4753
SEMIHARMONIC
4.000
0.010
4001
HARMONIC
2.000
1.130
7174
HARMONIC
2.000
4.490
13.320
0.2652
0.2070
0.2096
1.6600
131
2601
2732
15
4.8000
97.9700
1.600
40.000
4FU9
30737
0.080
0.855
1
6.200
97.900
0.340
1.600
1.640
1773
0.550
1
86.700
0.302
1.640
1.680
2033
0.536
1
97.500
0.270
1.680
1.720
2007
0.536
1
97.900
0.219
1.720
1.770
2038
0.574
1
99.100
0.193
1.770
1.830
2022
0.594
1
98.600
0.160
1.830
1.900
2058
0.643
1
99.700
0.129
1.900
1.970
2084
0.651
1
99.800
0.111
1.970
2.060
2060
0.739
1
99.800
0.096
2.060
2.170
2087
0.803
1
99.800
0.092
2.170
2.310
2076
0.889
1
99.600
0.079
2.310
2.490
2066
0.982
1
98.900
0.080
2.490
2.740
2076
1.103
1
99.000
0.068
2.740
3.130
2092
1.145
1
98.700
0.055
3.130
3.940
2117
1.292
1
98.100
0.050
3.940
40.000
2148
1.265
1
94.800
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
BUSTER 2.11.1
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
refinement
BUSTER
2.11.1
Urokinase-type plasminogen activator (E.C.3.4.21.73)
Crystal Structure of the Urokinase
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
6
N
N
7
N
N
A
THR
8
A
THR
8
HELX_P
A
GLN
12
A
GLN
12
5
1
5
A
ALA
44
A
ALA
44
HELX_P
A
PHE
48
A
PHE
48
5
2
5
A
LYS
53
A
LYS
53
HELX_P
A
GLU
55
A
GLU
55
5
3
3
A
SER
163
A
SER
163
HELX_P
A
GLN
168
A
GLN
168
1
4
6
A
TYR
173
A
TYR
173
HELX_P
A
VAL
177
A
VAL
177
5
5
5
A
PHE
237
A
PHE
237
HELX_P
A
LYS
246
A
LYS
246
1
6
10
disulf
2.040
A
CYS
31
A
SG
CYS
31
1_555
A
CYS
47
A
SG
CYS
47
1_555
disulf
2.030
A
CYS
39
A
SG
CYS
39
1_555
A
CYS
110
A
SG
CYS
110
1_555
disulf
2.042
A
CYS
135
A
SG
CYS
135
1_555
A
CYS
204
A
SG
CYS
204
1_555
disulf
2.012
A
CYS
167
A
SG
CYS
167
1_555
A
CYS
183
A
SG
CYS
183
1_555
disulf
2.055
A
CYS
194
A
SG
CYS
194
1_555
A
CYS
222
A
SG
CYS
222
1_555
HYDROLASE/HYDROLASE INHIBITOR
HYDROLASE-HYDROLASE INHIBITOR complex
UROK_HUMAN
UNP
1
179
P00749
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTK
179
424
4FU9
1
246
P00749
A
1
1
246
1
CYS
ENGINEERED MUTATION
ALA
121
4FU9
A
P00749
UNP
299
121
1
ASN
ENGINEERED MUTATION
GLN
144
4FU9
A
P00749
UNP
322
144
8
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
5
A
GLU
5
A
PHE
6
A
PHE
6
A
LYS
155
A
LYS
155
A
ILE
162
A
ILE
162
A
MET
181
A
MET
181
A
ALA
185
A
ALA
185
A
GLY
229
A
GLY
229
A
ARG
233
A
ARG
233
A
ARG
209
A
ARG
209
A
TRP
218
A
TRP
218
A
PRO
201
A
PRO
201
A
LEU
206
A
LEU
206
A
SER
134
A
SER
134
A
GLY
139
A
GLY
139
A
LYS
155
A
LYS
155
A
ILE
162
A
ILE
162
A
PHE
15
A
PHE
15
A
ARG
21
A
ARG
21
A
VAL
27
A
VAL
27
A
SER
37
A
SER
37
A
TRP
40
A
TRP
40
A
SER
43
A
SER
43
A
ALA
99
A
ALA
99
A
ARG
104
A
ARG
104
A
MET
74
A
MET
74
A
LEU
83
A
LEU
83
A
TYR
57
A
TYR
57
A
LEU
61
A
LEU
61
A
PHE
15
A
PHE
15
A
ARG
21
A
ARG
21
A
SER
88
A
SER
88
A
ALA
89
A
ALA
89
A
HIS
94
A
HIS
94
A
HIS
95
A
HIS
95
BINDING SITE FOR RESIDUE SO4 A 301
Software
8
BINDING SITE FOR RESIDUE SO4 A 302
Software
5
BINDING SITE FOR RESIDUE SO4 A 303
Software
4
BINDING SITE FOR RESIDUE SIN A 304
Software
9
BINDING SITE FOR RESIDUE GOL A 305
Software
8
BINDING SITE FOR RESIDUE GOL A 306
Software
5
BINDING SITE FOR RESIDUE GOL A 307
Software
6
BINDING SITE FOR RESIDUE GOL A 308
Software
6
BINDING SITE FOR RESIDUE GOL A 309
Software
9
BINDING SITE FOR RESIDUE GOL A 310
Software
5
BINDING SITE FOR RESIDUE ACT A 311
Software
7
BINDING SITE FOR RESIDUE ACT A 312
Software
3
BINDING SITE FOR RESIDUE 675 A 313
Software
12
A
LYS
53
A
LYS
53
8
3_545
A
HIS
95
A
HIS
95
8
1_555
A
THR
178
A
THR
178
8
1_555
A
LYS
180
A
LYS
180
8
1_555
A
MET
181
A
MET
181
8
1_555
A
HOH
425
O
HOH
8
1_555
A
HOH
573
O
HOH
8
1_555
A
HOH
580
O
HOH
8
1_555
A
TYR
126
A
TYR
126
5
1_555
A
ARG
233
A
ARG
233
5
1_555
A
HIS
236
A
HIS
236
5
1_555
A
HOH
555
O
HOH
5
1_555
A
HOH
603
O
HOH
5
1_555
A
LYS
180
A
LYS
180
4
1_555
A
HIS
236
A
HIS
236
4
1_555
A
HOH
486
O
HOH
4
1_555
A
HOH
692
O
HOH
4
1_555
A
VAL
30
A
VAL
30
9
1_555
A
CYS
31
A
CYS
31
9
1_555
A
HIS
46
A
HIS
46
9
1_555
A
CYS
47
A
CYS
47
9
1_555
A
GLN
195
A
GLN
195
9
1_555
A
GLY
196
A
GLY
196
9
1_555
A
SER
198
A
SER
198
9
1_555
A
675
313
N
675
9
1_555
A
HOH
590
O
HOH
9
1_555
A
THR
28
A
THR
28
8
1_555
A
TYR
29
A
TYR
29
8
1_555
A
TYR
150
A
TYR
150
8
1_555
A
HOH
421
O
HOH
8
1_555
A
HOH
431
O
HOH
8
1_555
A
HOH
435
O
HOH
8
1_555
A
HOH
658
O
HOH
8
1_555
A
HOH
733
O
HOH
8
1_555
A
LYS
75
A
LYS
75
5
1_555
A
LYS
106
A
LYS
106
5
1_555
A
LYS
225
A
LYS
225
5
1_565
A
HOH
514
O
HOH
5
1_565
A
HOH
623
O
HOH
5
1_555
A
VAL
27
A
VAL
27
6
1_555
A
TYR
60
A
TYR
60
6
1_555
A
ARG
63
A
ARG
63
6
1_555
A
LEU
66
A
LEU
66
6
1_555
A
HOH
653
O
HOH
6
1_555
A
HOH
709
O
HOH
6
1_555
A
PRO
52
A
PRO
52
6
3_545
A
LEU
81
A
LEU
81
6
3_545
A
THR
91
A
THR
91
6
1_555
A
HOH
441
O
HOH
6
1_555
A
HOH
448
O
HOH
6
3_545
A
HOH
498
O
HOH
6
1_555
A
SER
68
A
SER
68
9
2_455
A
ASN
69
A
ASN
69
9
2_455
A
PRO
239
A
PRO
239
9
1_555
A
TRP
240
A
TRP
240
9
1_555
A
SER
243
A
SER
243
9
1_555
A
HIS
244
A
HIS
244
9
1_555
A
HOH
433
O
HOH
9
1_555
A
HOH
544
O
HOH
9
1_555
A
HOH
681
O
HOH
9
2_455
A
ASN
11
A
ASN
11
5
4_545
A
LYS
142
A
LYS
142
5
1_555
A
GLN
195
A
GLN
195
5
1_555
A
HOH
505
O
HOH
5
1_555
A
HOH
569
O
HOH
5
4_545
A
THR
178
A
THR
178
7
1_555
A
THR
179
A
THR
179
7
1_555
A
HOH
461
O
HOH
7
1_555
A
HOH
477
O
HOH
7
1_555
A
HOH
545
O
HOH
7
3_545
A
HOH
573
O
HOH
7
1_555
A
HOH
580
O
HOH
7
1_555
A
ARG
20
A
ARG
20
3
1_555
A
HIS
22
A
HIS
22
3
1_555
A
HOH
561
O
HOH
3
4_545
A
HIS
46
A
HIS
46
12
1_555
A
HIS
94
A
HIS
94
12
1_555
A
ASP
192
A
ASP
192
12
1_555
A
SER
193
A
SER
193
12
1_555
A
GLN
195
A
GLN
195
12
1_555
A
SER
198
A
SER
198
12
1_555
A
TRP
218
A
TRP
218
12
1_555
A
GLY
221
A
GLY
221
12
1_555
A
GLY
229
A
GLY
229
12
1_555
A
SIN
304
E
SIN
12
1_555
A
HOH
443
O
HOH
12
1_555
A
HOH
700
O
HOH
12
1_555
19
P 21 21 21