0.010866
0.000000
0.006914
0.000000
0.029794
0.000000
0.000000
0.000000
0.014255
0.00000
0.00000
0.00000
Conrady, D.G.
Wilson, J.J.
Herr, A.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
122.470
90.000
92.034
33.564
83.148
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C N S -1
58.082
THIOCYANATE ION
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
S
N
257
N
C
N
258
N
N
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
R
C
N
278
N
O
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
N
301
N
O
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
doub
Y
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
trip
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
E202
E211
10.1073/pnas.1208134110
23277549
Structural basis for Zn2+-dependent intercellular adhesion in staphylococcal biofilms.
2013
10.2210/pdb4fun/pdb
pdb_00004fun
100
1
CCD
2011-11-11
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.2822
1.0
24-ID-C
APS
1.2822
SYNCHROTRON
APS BEAMLINE 24-ID-C
22302.549
Accumulation associated protein
UNP residues 2017-2223
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
58.082
THIOCYANATE ION
1
syn
non-polymer
18.015
water
78
nat
water
no
no
GVDGDSITSTEEIPFDKKREFDPNLAPGTEKVVQKGEPGTKTITTPTTKNPLTGEKVGEGEPTEKITKQPVDEIVHYGGE
QIPQGHKDEFDPNAPVDSKTEVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKREFDPNLAPGTEKV
VQKGEPGTKTITTPTTKNPLTGEKVGEGKSTEKVTKQPVDEIVEYGPT
GVDGDSITSTEEIPFDKKREFDPNLAPGTEKVVQKGEPGTKTITTPTTKNPLTGEKVGEGEPTEKITKQPVDEIVHYGGE
QIPQGHKDEFDPNAPVDSKTEVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKREFDPNLAPGTEKV
VQKGEPGTKTITTPTTKNPLTGEKVGEGKSTEKVTKQPVDEIVEYGPT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RP62A
sample
aap, SERP2398
176279
Staphylococcus epidermidis
562
Escherichia coli
BLR
plasmid
pH596
1
2.43
49.36
batch
7.9
0.06 M Postassium Thiocyanate, 0.1 M Tris pH 7.9, 28% PEG MME 2000, 2% PEG 3350, batch, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2013-01-16
1
1
2013-01-30
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-06-28
REL
REL
ZN
ZINC ION
SCN
THIOCYANATE ION
HOH
water
ZN
1
2
ZN
ZN
301
A
SCN
1
3
SCN
SCN
302
A
HOH
1
4
HOH
HOH
401
A
HOH
2
4
HOH
HOH
402
A
HOH
3
4
HOH
HOH
403
A
HOH
4
4
HOH
HOH
404
A
HOH
5
4
HOH
HOH
405
A
HOH
6
4
HOH
HOH
406
A
HOH
7
4
HOH
HOH
407
A
HOH
8
4
HOH
HOH
408
A
HOH
9
4
HOH
HOH
409
A
HOH
10
4
HOH
HOH
410
A
HOH
11
4
HOH
HOH
411
A
HOH
12
4
HOH
HOH
412
A
HOH
13
4
HOH
HOH
413
A
HOH
14
4
HOH
HOH
414
A
HOH
15
4
HOH
HOH
415
A
HOH
16
4
HOH
HOH
416
A
HOH
17
4
HOH
HOH
417
A
HOH
18
4
HOH
HOH
418
A
HOH
19
4
HOH
HOH
419
A
HOH
20
4
HOH
HOH
420
A
HOH
21
4
HOH
HOH
421
A
HOH
22
4
HOH
HOH
422
A
HOH
23
4
HOH
HOH
423
A
HOH
24
4
HOH
HOH
424
A
HOH
25
4
HOH
HOH
425
A
HOH
26
4
HOH
HOH
426
A
HOH
27
4
HOH
HOH
427
A
HOH
28
4
HOH
HOH
428
A
HOH
29
4
HOH
HOH
429
A
HOH
30
4
HOH
HOH
430
A
HOH
31
4
HOH
HOH
431
A
HOH
32
4
HOH
HOH
432
A
HOH
33
4
HOH
HOH
433
A
HOH
34
4
HOH
HOH
434
A
HOH
35
4
HOH
HOH
435
A
HOH
36
4
HOH
HOH
436
A
HOH
37
4
HOH
HOH
437
A
HOH
38
4
HOH
HOH
438
A
HOH
42
4
HOH
HOH
439
A
HOH
43
4
HOH
HOH
440
A
HOH
44
4
HOH
HOH
441
A
HOH
45
4
HOH
HOH
442
A
HOH
46
4
HOH
HOH
443
A
HOH
47
4
HOH
HOH
444
A
HOH
48
4
HOH
HOH
445
A
HOH
49
4
HOH
HOH
446
A
HOH
50
4
HOH
HOH
447
A
HOH
51
4
HOH
HOH
448
A
HOH
52
4
HOH
HOH
449
A
HOH
53
4
HOH
HOH
450
A
HOH
54
4
HOH
HOH
451
A
HOH
55
4
HOH
HOH
452
A
HOH
56
4
HOH
HOH
453
A
HOH
57
4
HOH
HOH
454
A
HOH
58
4
HOH
HOH
455
A
HOH
59
4
HOH
HOH
456
A
HOH
60
4
HOH
HOH
457
A
HOH
61
4
HOH
HOH
458
A
HOH
62
4
HOH
HOH
459
A
HOH
63
4
HOH
HOH
460
A
HOH
64
4
HOH
HOH
461
A
HOH
65
4
HOH
HOH
462
A
HOH
66
4
HOH
HOH
463
A
HOH
67
4
HOH
HOH
464
A
HOH
68
4
HOH
HOH
465
A
HOH
69
4
HOH
HOH
466
A
HOH
70
4
HOH
HOH
467
A
HOH
71
4
HOH
HOH
468
A
HOH
72
4
HOH
HOH
469
A
HOH
73
4
HOH
HOH
470
A
HOH
74
4
HOH
HOH
471
A
HOH
75
4
HOH
HOH
472
A
HOH
76
4
HOH
HOH
473
A
HOH
77
4
HOH
HOH
474
A
HOH
78
4
HOH
HOH
475
A
HOH
79
4
HOH
HOH
476
A
HOH
80
4
HOH
HOH
477
A
HOH
81
4
HOH
HOH
478
A
n
1
0
A
VAL
1
n
2
VAL
1
A
ASP
2
n
3
ASP
2
A
GLY
3
n
4
GLY
3
A
ASP
4
n
5
ASP
4
A
SER
5
n
6
SER
5
A
ILE
6
n
7
ILE
6
A
THR
7
n
8
THR
7
A
SER
8
n
9
SER
8
A
THR
9
n
10
THR
9
A
GLU
10
n
11
GLU
10
A
GLU
11
n
12
GLU
11
A
ILE
12
n
13
ILE
12
A
PRO
13
n
14
PRO
13
A
PHE
14
n
15
PHE
14
A
ASP
15
n
16
ASP
15
A
LYS
16
n
17
LYS
16
A
LYS
17
n
18
LYS
17
A
ARG
18
n
19
ARG
18
A
GLU
19
n
20
GLU
19
A
PHE
20
n
21
PHE
20
A
ASP
21
n
22
ASP
21
A
PRO
22
n
23
PRO
22
A
ASN
23
n
24
ASN
23
A
LEU
24
n
25
LEU
24
A
ALA
25
n
26
ALA
25
A
PRO
26
n
27
PRO
26
A
GLY
27
n
28
GLY
27
A
THR
28
n
29
THR
28
A
GLU
29
n
30
GLU
29
A
LYS
30
n
31
LYS
30
A
VAL
31
n
32
VAL
31
A
VAL
32
n
33
VAL
32
A
GLN
33
n
34
GLN
33
A
LYS
34
n
35
LYS
34
A
GLY
35
n
36
GLY
35
A
GLU
36
n
37
GLU
36
A
PRO
37
n
38
PRO
37
A
GLY
38
n
39
GLY
38
A
THR
39
n
40
THR
39
A
LYS
40
n
41
LYS
40
A
THR
41
n
42
THR
41
A
ILE
42
n
43
ILE
42
A
THR
43
n
44
THR
43
A
THR
44
n
45
THR
44
A
PRO
45
n
46
PRO
45
A
THR
46
n
47
THR
46
A
THR
47
n
48
THR
47
A
LYS
48
n
49
LYS
48
A
ASN
49
n
50
ASN
49
A
PRO
50
n
51
PRO
50
A
LEU
51
n
52
LEU
51
A
THR
52
n
53
THR
52
A
GLY
53
n
54
GLY
53
A
GLU
54
n
55
GLU
54
A
LYS
55
n
56
LYS
55
A
VAL
56
n
57
VAL
56
A
GLY
57
n
58
GLY
57
A
GLU
58
n
59
GLU
58
A
GLY
59
n
60
GLY
59
A
GLU
60
n
61
GLU
60
A
PRO
61
n
62
PRO
61
A
THR
62
n
63
THR
62
A
GLU
63
n
64
GLU
63
A
LYS
64
n
65
LYS
64
A
ILE
65
n
66
ILE
65
A
THR
66
n
67
THR
66
A
LYS
67
n
68
LYS
67
A
GLN
68
n
69
GLN
68
A
PRO
69
n
70
PRO
69
A
VAL
70
n
71
VAL
70
A
ASP
71
n
72
ASP
71
A
GLU
72
n
73
GLU
72
A
ILE
73
n
74
ILE
73
A
VAL
74
n
75
VAL
74
A
HIS
75
n
76
HIS
75
A
TYR
76
n
77
TYR
76
A
GLY
77
n
78
GLY
77
A
GLY
78
n
79
GLY
78
A
GLU
79
n
80
GLU
79
A
GLN
80
n
81
GLN
80
A
ILE
81
n
82
ILE
81
A
PRO
82
n
83
PRO
82
A
GLN
83
n
84
GLN
83
A
GLY
84
n
85
GLY
84
A
HIS
85
n
86
HIS
85
A
LYS
86
n
87
LYS
86
A
ASP
87
n
88
ASP
87
A
GLU
88
n
89
GLU
88
A
PHE
89
n
90
PHE
89
A
ASP
90
n
91
ASP
90
A
PRO
91
n
92
PRO
91
A
ASN
92
n
93
ASN
92
A
ALA
93
n
94
ALA
93
A
PRO
94
n
95
PRO
94
A
VAL
95
n
96
VAL
95
A
ASP
96
n
97
ASP
96
A
SER
97
n
98
SER
97
A
LYS
98
n
99
LYS
98
A
THR
99
n
100
THR
99
A
GLU
100
n
101
GLU
100
A
VAL
101
n
102
VAL
101
A
PRO
102
n
103
PRO
102
A
GLY
103
n
104
GLY
103
A
LYS
104
n
105
LYS
104
A
PRO
105
n
106
PRO
105
A
GLY
106
n
107
GLY
106
A
VAL
107
n
108
VAL
107
A
LYS
108
n
109
LYS
108
A
ASN
109
n
110
ASN
109
A
PRO
110
n
111
PRO
110
A
ASP
111
n
112
ASP
111
A
THR
112
n
113
THR
112
A
GLY
113
n
114
GLY
113
A
GLU
114
n
115
GLU
114
A
VAL
115
n
116
VAL
115
A
VAL
116
n
117
VAL
116
A
THR
117
n
118
THR
117
A
PRO
118
n
119
PRO
118
A
PRO
119
n
120
PRO
119
A
VAL
120
n
121
VAL
120
A
ASP
121
n
122
ASP
121
A
ASP
122
n
123
ASP
122
A
VAL
123
n
124
VAL
123
A
THR
124
n
125
THR
124
A
LYS
125
n
126
LYS
125
A
TYR
126
n
127
TYR
126
A
GLY
127
n
128
GLY
127
A
PRO
128
n
129
PRO
128
A
VAL
129
n
130
VAL
129
A
ASP
130
n
131
ASP
130
A
GLY
131
n
132
GLY
131
A
ASP
132
n
133
ASP
132
A
SER
133
n
134
SER
133
A
ILE
134
n
135
ILE
134
A
THR
135
n
136
THR
135
A
SER
136
n
137
SER
136
A
THR
137
n
138
THR
137
A
GLU
138
n
139
GLU
138
A
GLU
139
n
140
GLU
139
A
ILE
140
n
141
ILE
140
A
PRO
141
n
142
PRO
141
A
PHE
142
n
143
PHE
142
A
ASP
143
n
144
ASP
143
A
LYS
144
n
145
LYS
144
A
LYS
145
n
146
LYS
145
A
ARG
146
n
147
ARG
146
A
GLU
147
n
148
GLU
147
A
PHE
148
n
149
PHE
148
A
ASP
149
n
150
ASP
149
A
PRO
150
n
151
PRO
150
A
ASN
151
n
152
ASN
151
A
LEU
152
n
153
LEU
152
A
ALA
153
n
154
ALA
153
A
PRO
154
n
155
PRO
154
A
GLY
155
n
156
GLY
155
A
THR
156
n
157
THR
156
A
GLU
157
n
158
GLU
157
A
LYS
158
n
159
LYS
158
A
VAL
159
n
160
VAL
159
A
VAL
160
n
161
VAL
160
A
GLN
161
n
162
GLN
161
A
LYS
162
n
163
LYS
162
A
GLY
163
n
164
GLY
163
A
GLU
164
n
165
GLU
164
A
PRO
165
n
166
PRO
165
A
GLY
166
n
167
GLY
166
A
THR
167
n
168
THR
167
A
LYS
168
n
169
LYS
168
A
THR
169
n
170
THR
169
A
ILE
170
n
171
ILE
170
A
THR
171
n
172
THR
171
A
THR
172
n
173
THR
172
A
PRO
173
n
174
PRO
173
A
THR
174
n
175
THR
174
A
THR
175
n
176
THR
175
A
LYS
176
n
177
LYS
176
A
ASN
177
n
178
ASN
177
A
PRO
178
n
179
PRO
178
A
LEU
179
n
180
LEU
179
A
THR
180
n
181
THR
180
A
GLY
181
n
182
GLY
181
A
GLU
182
n
183
GLU
182
A
LYS
183
n
184
LYS
183
A
VAL
184
n
185
VAL
184
A
GLY
185
n
186
GLY
185
A
GLU
186
n
187
GLU
186
A
GLY
187
n
188
GLY
187
A
LYS
188
n
189
LYS
188
A
SER
189
n
190
SER
189
A
THR
190
n
191
THR
190
A
GLU
191
n
192
GLU
191
A
LYS
192
n
193
LYS
192
A
VAL
193
n
194
VAL
193
A
THR
194
n
195
THR
194
A
LYS
195
n
196
LYS
195
A
GLN
196
n
197
GLN
196
A
PRO
197
n
198
PRO
197
A
VAL
198
n
199
VAL
198
A
ASP
199
n
200
ASP
199
A
GLU
200
n
201
GLU
200
A
ILE
201
n
202
ILE
201
A
VAL
202
n
203
VAL
202
A
GLU
203
n
204
GLU
203
A
TYR
204
n
205
TYR
204
A
GLY
205
n
206
GLY
205
A
PRO
206
n
207
PRO
206
A
n
208
207
A
-0.2285
0.5368
-0.4514
1.1753
-0.1914
4.7282
-0.0820
0.1781
-0.0426
-0.1849
0.0634
0.0108
0.1142
0.0992
0.0187
0.0129
-0.0241
-0.0102
-0.1006
-0.0161
-0.0537
refined
12.4603
-0.4423
38.1116
X-RAY DIFFRACTION
1.8365
-0.0695
2.2528
0.0000
-0.4125
6.4660
-0.0828
0.3346
-0.0053
-0.1085
0.0971
-0.0216
-0.0594
0.1559
-0.0143
0.0195
-0.0924
-0.1035
-0.0882
-0.0051
-0.0987
refined
5.5906
1.4651
27.2117
X-RAY DIFFRACTION
1.0955
-0.1994
0.9198
0.3863
0.5646
8.3778
-0.0221
0.1749
-0.0919
0.0617
-0.0122
0.1977
0.3465
0.0531
0.0342
-0.0272
-0.0317
-0.0127
-0.1024
0.0046
-0.0596
refined
30.6403
0.3275
81.9966
X-RAY DIFFRACTION
-0.3384
0.1269
0.9278
0.0000
1.1645
18.0419
0.0330
0.1010
-0.0164
-0.0438
-0.0056
-0.0696
-0.3697
0.2901
-0.0273
0.0590
0.0088
-0.0135
0.0093
-0.0001
-0.0764
refined
39.0465
3.0041
134.3028
X-RAY DIFFRACTION
A
1
A
29
X-RAY DIFFRACTION
1
{A|1 - 29}
A
30
A
77
X-RAY DIFFRACTION
2
{A|30 - 77}
A
78
A
136
X-RAY DIFFRACTION
3
{A|78 - 136}
A
137
A
206
X-RAY DIFFRACTION
4
{A|137 - 206}
author_and_software_defined_assembly
PISA
2
dimeric
2890
-89
25970
A
ASP
21
A
OD2
ASP
22
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
75
A
ND1
HIS
76
1_555
110.3
A
ASP
21
A
OD2
ASP
22
1_555
A
ZN
301
B
ZN
ZN
1_555
A
SCN
302
C
N
SCN
1_555
95.7
A
HIS
75
A
ND1
HIS
76
1_555
A
ZN
301
B
ZN
ZN
1_555
A
SCN
302
C
N
SCN
1_555
120.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_758
-x+2,y,-z+3
crystal symmetry operation
50.1520090157
0.0000000000
210.4490829030
A
N
SER
8
A
N
SER
9
A
O
ILE
42
A
O
ILE
43
A
N
THR
47
A
N
THR
48
A
O
VAL
56
A
O
VAL
57
A
N
SER
8
A
N
SER
9
A
O
ILE
42
A
O
ILE
43
A
N
THR
41
A
N
THR
42
A
O
LYS
64
A
O
LYS
65
A
N
LYS
17
A
N
LYS
18
A
O
GLU
72
A
O
GLU
73
A
O
ILE
73
A
O
ILE
74
A
N
VAL
32
A
N
VAL
33
A
N
ILE
81
A
N
ILE
82
A
O
GLY
106
A
O
GLY
107
A
N
VAL
107
A
N
VAL
108
A
O
THR
117
A
O
THR
118
A
N
GLU
88
A
N
GLU
89
A
O
THR
124
A
O
THR
125
A
O
LYS
125
A
O
LYS
126
A
N
THR
99
A
N
THR
100
A
N
VAL
129
A
N
VAL
130
A
O
LYS
176
A
O
LYS
177
A
N
THR
175
A
N
THR
176
A
O
VAL
184
A
O
VAL
185
A
N
SER
136
A
N
SER
137
A
O
ILE
170
A
O
ILE
171
A
N
THR
169
A
N
THR
170
A
O
LYS
192
A
O
LYS
193
A
N
LYS
145
A
N
LYS
146
A
O
GLU
200
A
O
GLU
201
A
O
GLU
203
A
O
GLU
204
A
N
LYS
158
A
N
LYS
159
1
A
CG1
VAL
1
A
CG1
VAL
2
1
Y
1
A
CG2
VAL
1
A
CG2
VAL
2
1
Y
1
A
CG
ASP
4
A
CG
ASP
5
1
Y
1
A
OD1
ASP
4
A
OD1
ASP
5
1
Y
1
A
OD2
ASP
4
A
OD2
ASP
5
1
Y
1
A
OG
SER
5
A
OG
SER
6
1
Y
1
A
OG
SER
8
A
OG
SER
9
1
Y
1
A
CG
GLU
19
A
CG
GLU
20
1
Y
1
A
CD
GLU
19
A
CD
GLU
20
1
Y
1
A
OE1
GLU
19
A
OE1
GLU
20
1
Y
1
A
OE2
GLU
19
A
OE2
GLU
20
1
Y
1
A
CE
LYS
40
A
CE
LYS
41
1
Y
1
A
NZ
LYS
40
A
NZ
LYS
41
1
Y
1
A
CE
LYS
48
A
CE
LYS
49
1
Y
1
A
NZ
LYS
48
A
NZ
LYS
49
1
Y
1
A
CG
LEU
51
A
CG
LEU
52
1
Y
1
A
CD1
LEU
51
A
CD1
LEU
52
1
Y
1
A
CD2
LEU
51
A
CD2
LEU
52
1
Y
1
A
CG
GLU
54
A
CG
GLU
55
1
Y
1
A
CD
GLU
54
A
CD
GLU
55
1
Y
1
A
OE1
GLU
54
A
OE1
GLU
55
1
Y
1
A
OE2
GLU
54
A
OE2
GLU
55
1
Y
1
A
CG
LYS
55
A
CG
LYS
56
1
Y
1
A
CD
LYS
55
A
CD
LYS
56
1
Y
1
A
CE
LYS
55
A
CE
LYS
56
1
Y
1
A
NZ
LYS
55
A
NZ
LYS
56
1
Y
1
A
CG
GLU
79
A
CG
GLU
80
1
Y
1
A
CD
GLU
79
A
CD
GLU
80
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
80
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
80
1
Y
1
A
CD
LYS
86
A
CD
LYS
87
1
Y
1
A
CE
LYS
86
A
CE
LYS
87
1
Y
1
A
NZ
LYS
86
A
NZ
LYS
87
1
Y
1
A
CG
GLU
88
A
CG
GLU
89
1
Y
1
A
CD
GLU
88
A
CD
GLU
89
1
Y
1
A
OE1
GLU
88
A
OE1
GLU
89
1
Y
1
A
OE2
GLU
88
A
OE2
GLU
89
1
Y
1
A
CG1
VAL
101
A
CG1
VAL
102
1
Y
1
A
CG2
VAL
101
A
CG2
VAL
102
1
Y
1
A
CG
GLU
114
A
CG
GLU
115
1
Y
1
A
CD
GLU
114
A
CD
GLU
115
1
Y
1
A
OE1
GLU
114
A
OE1
GLU
115
1
Y
1
A
OE2
GLU
114
A
OE2
GLU
115
1
Y
1
A
CD
LYS
125
A
CD
LYS
126
1
Y
1
A
CE
LYS
125
A
CE
LYS
126
1
Y
1
A
NZ
LYS
125
A
NZ
LYS
126
1
Y
1
A
CG
GLU
138
A
CG
GLU
139
1
Y
1
A
CD
GLU
138
A
CD
GLU
139
1
Y
1
A
OE1
GLU
138
A
OE1
GLU
139
1
Y
1
A
OE2
GLU
138
A
OE2
GLU
139
1
Y
1
A
CG
ASP
143
A
CG
ASP
144
1
Y
1
A
OD1
ASP
143
A
OD1
ASP
144
1
Y
1
A
OD2
ASP
143
A
OD2
ASP
144
1
Y
1
A
CD
LYS
158
A
CD
LYS
159
1
Y
1
A
CE
LYS
158
A
CE
LYS
159
1
Y
1
A
NZ
LYS
158
A
NZ
LYS
159
1
Y
1
A
CG
GLU
164
A
CG
GLU
165
1
Y
1
A
CD
GLU
164
A
CD
GLU
165
1
Y
1
A
OE1
GLU
164
A
OE1
GLU
165
1
Y
1
A
OE2
GLU
164
A
OE2
GLU
165
1
Y
1
A
CD
LYS
168
A
CD
LYS
169
1
Y
1
A
CE
LYS
168
A
CE
LYS
169
1
Y
1
A
NZ
LYS
168
A
NZ
LYS
169
1
Y
1
A
CG1
ILE
170
A
CG1
ILE
171
1
Y
1
A
CG2
ILE
170
A
CG2
ILE
171
1
Y
1
A
CD1
ILE
170
A
CD1
ILE
171
1
Y
1
A
CG
GLU
191
A
CG
GLU
192
1
Y
1
A
CD
GLU
191
A
CD
GLU
192
1
Y
1
A
OE1
GLU
191
A
OE1
GLU
192
1
Y
1
A
OE2
GLU
191
A
OE2
GLU
192
1
Y
1
A
CG
ASP
199
A
CG
ASP
200
1
Y
1
A
OD1
ASP
199
A
OD1
ASP
200
1
Y
1
A
OD2
ASP
199
A
OD2
ASP
200
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
THR
207
A
THR
208
1
Y
1
A
ASP
2
-58.75
172.42
129.290
48.2024
21.100
-15.4649
0.0000
4.0390
-0.2456
0.0000
15.7105
0.9169
0.8963
0.2578
0.2029
0.2055
2.3100
46.0100
453
9395
4.8200
96.9500
1.000
1.000
0.3350
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.348
2.3100
46.0100
78
1566
4
0
1484
673
SINUSOIDAL
2.000
41
HARMONIC
2.000
217
HARMONIC
5.000
1520
HARMONIC
20.000
0
SEMIHARMONIC
5.000
221
SEMIHARMONIC
5.000
1594
SEMIHARMONIC
4.000
0.010
1520
HARMONIC
2.000
1.240
2081
HARMONIC
2.000
3.200
2.520
0.3336
0.2233
0.2282
2.5800
120
2468
2588
5
4.6400
96.9500
2.310
50.000
4FUN
9395
0.102
7.161
1
20.000
7.300
97.600
0.275
2.310
2.390
915
2.128
1
6.900
96.000
0.244
2.390
2.490
917
2.388
1
7.300
96.900
0.217
2.490
2.600
927
2.699
1
7.500
97.100
0.185
2.600
2.740
928
3.491
1
7.500
97.400
0.152
2.740
2.910
922
5.126
1
7.500
97.700
0.142
2.910
3.130
936
8.169
1
7.500
97.800
0.116
3.130
3.450
950
9.818
1
7.500
98.200
0.098
3.450
3.950
939
11.694
1
7.400
98.200
0.081
3.950
4.980
969
11.688
1
7.200
99.000
0.078
4.980
50.000
992
13.798
1
7.000
97.300
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
BUSTER 2.10.0
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
refinement
BUSTER
2.10.0
Structural basis for Zn2+-dependent intercellular adhesion in staphylococcal biofilms
1
N
N
2
N
N
3
N
N
4
N
N
metalc
1.969
A
ASP
21
A
OD2
ASP
22
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.089
A
HIS
75
A
ND1
HIS
76
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.016
A
ZN
301
B
ZN
ZN
1_555
A
SCN
302
C
N
SCN
1_555
MEMBRANE PROTEIN
hydrophilic protein, non-globular, freestanding beta sheet, intercellular adhesion, zinc dependent dimer, MEMBRANE PROTEIN
Q5HKE8_STAEQ
UNP
1
2017
Q5HKE8
VDGDSITSTEEIPFDKKREFDPNLAPGTEKVVQKGEPGTKTITTPTTKNPLTGEKVGEGEPTEKITKQPVDEIVHYGGEQ
IPQGHKDEFDPNAPVDSKTEVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKREFDPNLAPGTEKVV
QKGEPGTKTITTPTTKNPLTGEKVGEGKSTEKVTKQPVDEIVEYGPT
2017
2223
4FUN
1
207
Q5HKE8
A
1
2
208
1
expression tag
GLY
0
4FUN
A
Q5HKE8
UNP
1
3
3
3
3
3
3
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
GLY
3
A
GLY
4
A
ILE
12
A
ILE
13
A
GLY
38
A
GLY
39
A
LYS
48
A
LYS
49
A
LYS
55
A
LYS
56
A
GLU
58
A
GLU
59
A
GLY
3
A
GLY
4
A
ILE
12
A
ILE
13
A
GLY
38
A
GLY
39
A
LYS
48
A
LYS
49
A
THR
62
A
THR
63
A
LYS
67
A
LYS
68
A
LYS
16
A
LYS
17
A
PHE
20
A
PHE
21
A
GLU
72
A
GLU
73
A
TYR
76
A
TYR
77
A
GLU
29
A
GLU
30
A
GLN
33
A
GLN
34
A
GLU
79
A
GLU
80
A
ILE
81
A
ILE
82
A
GLY
106
A
GLY
107
A
LYS
108
A
LYS
109
A
VAL
115
A
VAL
116
A
THR
117
A
THR
118
A
HIS
85
A
HIS
86
A
PHE
89
A
PHE
90
A
ASP
122
A
ASP
123
A
TYR
126
A
TYR
127
A
LYS
98
A
LYS
99
A
VAL
101
A
VAL
102
A
VAL
129
A
VAL
130
A
ASP
130
A
ASP
131
A
THR
174
A
THR
175
A
LYS
176
A
LYS
177
A
LYS
183
A
LYS
184
A
GLU
186
A
GLU
187
A
ILE
134
A
ILE
135
A
ILE
140
A
ILE
141
A
GLY
166
A
GLY
167
A
THR
172
A
THR
173
A
THR
190
A
THR
191
A
LYS
195
A
LYS
196
A
LYS
144
A
LYS
145
A
PHE
148
A
PHE
149
A
GLU
200
A
GLU
201
A
TYR
204
A
TYR
205
A
GLU
157
A
GLU
158
A
GLN
161
A
GLN
162
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
3
BINDING SITE FOR RESIDUE SCN A 302
A
SCN
302
Software
4
A
ASP
21
A
ASP
22
3
1_555
A
HIS
75
A
HIS
76
3
1_555
A
SCN
302
C
SCN
3
1_555
A
ASP
21
A
ASP
22
4
1_555
A
VAL
32
A
VAL
33
4
1_555
A
HIS
75
A
HIS
76
4
1_555
A
ZN
301
B
ZN
4
1_555
5
C 1 2 1