0.024853
-0.004974
-0.002420
0.000000
0.024526
-0.010567
0.000000
0.000000
0.022755
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
65.470
80.430
78.680
40.236
41.582
48.528
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN LIGAND
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be published
0353
Crystal structure of a leucine aminopeptidase precursor (BT_2548) from Bacteroides thetaiotaomicron VPI-5482 at 1.30 A resolution
10.2210/pdb4fuu/pdb
pdb_00004fuu
100
1
KOHZU: Double Crystal Si(111)
CCD
2011-10-16
ADSC QUANTUM 315
Double Crystal Si(111)
MAD
M
x-ray
1
0.9537
1.0
0.9796
1.0
0.9793
1.0
8.2.2
ALS
0.9537,0.9796,0.9793
SYNCHROTRON
ALS BEAMLINE 8.2.2
34590.254
Leucine aminopeptidase
UNP residues 24-331
1
man
polymer
UNKNOWN LIGAND
1
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
3
syn
non-polymer
18.015
water
329
nat
water
no
yes
GGGKATGTNEQSEKVVVNVPQFDADSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLL
KARNIIGSYKPESKKRIALFAHWDTRPWADNDADEKNHHTPILGANDGASGVGALLEIARLVNQQQPELGIDIIFLDAED
YGTPQFYEGKHKEEAWCLGSQYWSRNPHVQGYNARFGILLD(MSE)VGGENSVFLKEGYSEEFAPDINKKVWKAAKKAGY
GKTFIDERGDTITDDHLFINRLARIKTIDIIPNDPETGFPPTWHTIHDN(MSE)DHIDKNTLKAVGQTVLEVIYNEK
GGGKATGTNEQSEKVVVNVPQFDADSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLL
KARNIIGSYKPESKKRIALFAHWDTRPWADNDADEKNHHTPILGANDGASGVGALLEIARLVNQQQPELGIDIIFLDAED
YGTPQFYEGKHKEEAWCLGSQYWSRNPHVQGYNARFGILLDMVGGENSVFLKEGYSEEFAPDINKKVWKAAKKAGYGKTF
IDERGDTITDDHLFINRLARIKTIDIIPNDPETGFPPTWHTIHDNMDHIDKNTLKAVGQTVLEVIYNEK
A
JCSG-417178
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482
sample
BT_2548
226186
Bacteroides thetaiotaomicron
562
Escherichia coli
PB1
Plasmid
SpeedET
1
2.08
40.99
VAPOR DIFFUSION, SITTING DROP
20.00% polyethylene glycol 3350, 0.200M ammonium dihydrogen phosphate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Database references
Derived calculations
1
0
2012-10-31
1
1
2017-11-15
1
2
2023-02-01
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2012-06-28
REL
REL
UNL
UNKNOWN LIGAND
PO4
PHOSPHATE ION
ZN
ZINC ION
EDO
1,2-ETHANEDIOL
HOH
water
THIS CONSTRUCT (RESIDUES 24-331) WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
UNL
332
2
UNL
UNL
401
A
PO4
333
3
PO4
PO4
402
A
ZN
334
4
ZN
ZN
403
A
EDO
335
5
EDO
EDO
404
A
EDO
336
5
EDO
EDO
405
A
EDO
337
5
EDO
EDO
406
A
HOH
338
6
HOH
HOH
501
A
HOH
339
6
HOH
HOH
502
A
HOH
340
6
HOH
HOH
503
A
HOH
341
6
HOH
HOH
504
A
HOH
342
6
HOH
HOH
505
A
HOH
343
6
HOH
HOH
506
A
HOH
344
6
HOH
HOH
507
A
HOH
345
6
HOH
HOH
508
A
HOH
346
6
HOH
HOH
509
A
HOH
347
6
HOH
HOH
510
A
HOH
348
6
HOH
HOH
511
A
HOH
349
6
HOH
HOH
512
A
HOH
350
6
HOH
HOH
513
A
HOH
351
6
HOH
HOH
514
A
HOH
352
6
HOH
HOH
515
A
HOH
353
6
HOH
HOH
516
A
HOH
354
6
HOH
HOH
517
A
HOH
355
6
HOH
HOH
518
A
HOH
356
6
HOH
HOH
519
A
HOH
357
6
HOH
HOH
520
A
HOH
358
6
HOH
HOH
521
A
HOH
359
6
HOH
HOH
522
A
HOH
360
6
HOH
HOH
523
A
HOH
361
6
HOH
HOH
524
A
HOH
362
6
HOH
HOH
525
A
HOH
363
6
HOH
HOH
526
A
HOH
364
6
HOH
HOH
527
A
HOH
365
6
HOH
HOH
528
A
HOH
366
6
HOH
HOH
529
A
HOH
367
6
HOH
HOH
530
A
HOH
368
6
HOH
HOH
531
A
HOH
369
6
HOH
HOH
532
A
HOH
370
6
HOH
HOH
533
A
HOH
371
6
HOH
HOH
534
A
HOH
372
6
HOH
HOH
535
A
HOH
373
6
HOH
HOH
536
A
HOH
374
6
HOH
HOH
537
A
HOH
375
6
HOH
HOH
538
A
HOH
376
6
HOH
HOH
539
A
HOH
377
6
HOH
HOH
540
A
HOH
378
6
HOH
HOH
541
A
HOH
379
6
HOH
HOH
542
A
HOH
380
6
HOH
HOH
543
A
HOH
381
6
HOH
HOH
544
A
HOH
382
6
HOH
HOH
545
A
HOH
383
6
HOH
HOH
546
A
HOH
384
6
HOH
HOH
547
A
HOH
385
6
HOH
HOH
548
A
HOH
386
6
HOH
HOH
549
A
HOH
387
6
HOH
HOH
550
A
HOH
388
6
HOH
HOH
551
A
HOH
389
6
HOH
HOH
552
A
HOH
390
6
HOH
HOH
553
A
HOH
391
6
HOH
HOH
554
A
HOH
392
6
HOH
HOH
555
A
HOH
393
6
HOH
HOH
556
A
HOH
394
6
HOH
HOH
557
A
HOH
395
6
HOH
HOH
558
A
HOH
396
6
HOH
HOH
559
A
HOH
397
6
HOH
HOH
560
A
HOH
398
6
HOH
HOH
561
A
HOH
399
6
HOH
HOH
562
A
HOH
400
6
HOH
HOH
563
A
HOH
401
6
HOH
HOH
564
A
HOH
402
6
HOH
HOH
565
A
HOH
403
6
HOH
HOH
566
A
HOH
404
6
HOH
HOH
567
A
HOH
405
6
HOH
HOH
568
A
HOH
406
6
HOH
HOH
569
A
HOH
407
6
HOH
HOH
570
A
HOH
408
6
HOH
HOH
571
A
HOH
409
6
HOH
HOH
572
A
HOH
410
6
HOH
HOH
573
A
HOH
411
6
HOH
HOH
574
A
HOH
412
6
HOH
HOH
575
A
HOH
413
6
HOH
HOH
576
A
HOH
414
6
HOH
HOH
577
A
HOH
415
6
HOH
HOH
578
A
HOH
416
6
HOH
HOH
579
A
HOH
417
6
HOH
HOH
580
A
HOH
418
6
HOH
HOH
581
A
HOH
419
6
HOH
HOH
582
A
HOH
420
6
HOH
HOH
583
A
HOH
421
6
HOH
HOH
584
A
HOH
422
6
HOH
HOH
585
A
HOH
423
6
HOH
HOH
586
A
HOH
424
6
HOH
HOH
587
A
HOH
425
6
HOH
HOH
588
A
HOH
426
6
HOH
HOH
589
A
HOH
427
6
HOH
HOH
590
A
HOH
428
6
HOH
HOH
591
A
HOH
429
6
HOH
HOH
592
A
HOH
430
6
HOH
HOH
593
A
HOH
431
6
HOH
HOH
594
A
HOH
432
6
HOH
HOH
595
A
HOH
433
6
HOH
HOH
596
A
HOH
434
6
HOH
HOH
597
A
HOH
435
6
HOH
HOH
598
A
HOH
436
6
HOH
HOH
599
A
HOH
437
6
HOH
HOH
600
A
HOH
438
6
HOH
HOH
601
A
HOH
439
6
HOH
HOH
602
A
HOH
440
6
HOH
HOH
603
A
HOH
441
6
HOH
HOH
604
A
HOH
442
6
HOH
HOH
605
A
HOH
443
6
HOH
HOH
606
A
HOH
444
6
HOH
HOH
607
A
HOH
445
6
HOH
HOH
608
A
HOH
446
6
HOH
HOH
609
A
HOH
447
6
HOH
HOH
610
A
HOH
448
6
HOH
HOH
611
A
HOH
449
6
HOH
HOH
612
A
HOH
450
6
HOH
HOH
613
A
HOH
451
6
HOH
HOH
614
A
HOH
452
6
HOH
HOH
615
A
HOH
453
6
HOH
HOH
616
A
HOH
454
6
HOH
HOH
617
A
HOH
455
6
HOH
HOH
618
A
HOH
456
6
HOH
HOH
619
A
HOH
457
6
HOH
HOH
620
A
HOH
458
6
HOH
HOH
621
A
HOH
459
6
HOH
HOH
622
A
HOH
460
6
HOH
HOH
623
A
HOH
461
6
HOH
HOH
624
A
HOH
462
6
HOH
HOH
625
A
HOH
463
6
HOH
HOH
626
A
HOH
464
6
HOH
HOH
627
A
HOH
465
6
HOH
HOH
628
A
HOH
466
6
HOH
HOH
629
A
HOH
467
6
HOH
HOH
630
A
HOH
468
6
HOH
HOH
631
A
HOH
469
6
HOH
HOH
632
A
HOH
470
6
HOH
HOH
633
A
HOH
471
6
HOH
HOH
634
A
HOH
472
6
HOH
HOH
635
A
HOH
473
6
HOH
HOH
636
A
HOH
474
6
HOH
HOH
637
A
HOH
475
6
HOH
HOH
638
A
HOH
476
6
HOH
HOH
639
A
HOH
477
6
HOH
HOH
640
A
HOH
478
6
HOH
HOH
641
A
HOH
479
6
HOH
HOH
642
A
HOH
480
6
HOH
HOH
643
A
HOH
481
6
HOH
HOH
644
A
HOH
482
6
HOH
HOH
645
A
HOH
483
6
HOH
HOH
646
A
HOH
484
6
HOH
HOH
647
A
HOH
485
6
HOH
HOH
648
A
HOH
486
6
HOH
HOH
649
A
HOH
487
6
HOH
HOH
650
A
HOH
488
6
HOH
HOH
651
A
HOH
489
6
HOH
HOH
652
A
HOH
490
6
HOH
HOH
653
A
HOH
491
6
HOH
HOH
654
A
HOH
492
6
HOH
HOH
655
A
HOH
493
6
HOH
HOH
656
A
HOH
494
6
HOH
HOH
657
A
HOH
495
6
HOH
HOH
658
A
HOH
496
6
HOH
HOH
659
A
HOH
497
6
HOH
HOH
660
A
HOH
498
6
HOH
HOH
661
A
HOH
499
6
HOH
HOH
662
A
HOH
500
6
HOH
HOH
663
A
HOH
501
6
HOH
HOH
664
A
HOH
502
6
HOH
HOH
665
A
HOH
503
6
HOH
HOH
666
A
HOH
504
6
HOH
HOH
667
A
HOH
505
6
HOH
HOH
668
A
HOH
506
6
HOH
HOH
669
A
HOH
507
6
HOH
HOH
670
A
HOH
508
6
HOH
HOH
671
A
HOH
509
6
HOH
HOH
672
A
HOH
510
6
HOH
HOH
673
A
HOH
511
6
HOH
HOH
674
A
HOH
512
6
HOH
HOH
675
A
HOH
513
6
HOH
HOH
676
A
HOH
514
6
HOH
HOH
677
A
HOH
515
6
HOH
HOH
678
A
HOH
516
6
HOH
HOH
679
A
HOH
517
6
HOH
HOH
680
A
HOH
518
6
HOH
HOH
681
A
HOH
519
6
HOH
HOH
682
A
HOH
520
6
HOH
HOH
683
A
HOH
521
6
HOH
HOH
684
A
HOH
522
6
HOH
HOH
685
A
HOH
523
6
HOH
HOH
686
A
HOH
524
6
HOH
HOH
687
A
HOH
525
6
HOH
HOH
688
A
HOH
526
6
HOH
HOH
689
A
HOH
527
6
HOH
HOH
690
A
HOH
528
6
HOH
HOH
691
A
HOH
529
6
HOH
HOH
692
A
HOH
530
6
HOH
HOH
693
A
HOH
531
6
HOH
HOH
694
A
HOH
532
6
HOH
HOH
695
A
HOH
533
6
HOH
HOH
696
A
HOH
534
6
HOH
HOH
697
A
HOH
535
6
HOH
HOH
698
A
HOH
536
6
HOH
HOH
699
A
HOH
537
6
HOH
HOH
700
A
HOH
538
6
HOH
HOH
701
A
HOH
539
6
HOH
HOH
702
A
HOH
540
6
HOH
HOH
703
A
HOH
541
6
HOH
HOH
704
A
HOH
542
6
HOH
HOH
705
A
HOH
543
6
HOH
HOH
706
A
HOH
544
6
HOH
HOH
707
A
HOH
545
6
HOH
HOH
708
A
HOH
546
6
HOH
HOH
709
A
HOH
547
6
HOH
HOH
710
A
HOH
548
6
HOH
HOH
711
A
HOH
549
6
HOH
HOH
712
A
HOH
550
6
HOH
HOH
713
A
HOH
551
6
HOH
HOH
714
A
HOH
552
6
HOH
HOH
715
A
HOH
553
6
HOH
HOH
716
A
HOH
554
6
HOH
HOH
717
A
HOH
555
6
HOH
HOH
718
A
HOH
556
6
HOH
HOH
719
A
HOH
557
6
HOH
HOH
720
A
HOH
558
6
HOH
HOH
721
A
HOH
559
6
HOH
HOH
722
A
HOH
560
6
HOH
HOH
723
A
HOH
561
6
HOH
HOH
724
A
HOH
562
6
HOH
HOH
725
A
HOH
563
6
HOH
HOH
726
A
HOH
564
6
HOH
HOH
727
A
HOH
565
6
HOH
HOH
728
A
HOH
566
6
HOH
HOH
729
A
HOH
567
6
HOH
HOH
730
A
HOH
568
6
HOH
HOH
731
A
HOH
569
6
HOH
HOH
732
A
HOH
570
6
HOH
HOH
733
A
HOH
571
6
HOH
HOH
734
A
HOH
572
6
HOH
HOH
735
A
HOH
573
6
HOH
HOH
736
A
HOH
574
6
HOH
HOH
737
A
HOH
575
6
HOH
HOH
738
A
HOH
576
6
HOH
HOH
739
A
HOH
577
6
HOH
HOH
740
A
HOH
578
6
HOH
HOH
741
A
HOH
579
6
HOH
HOH
742
A
HOH
580
6
HOH
HOH
743
A
HOH
581
6
HOH
HOH
744
A
HOH
582
6
HOH
HOH
745
A
HOH
583
6
HOH
HOH
746
A
HOH
584
6
HOH
HOH
747
A
HOH
585
6
HOH
HOH
748
A
HOH
586
6
HOH
HOH
749
A
HOH
587
6
HOH
HOH
750
A
HOH
588
6
HOH
HOH
751
A
HOH
589
6
HOH
HOH
752
A
HOH
590
6
HOH
HOH
753
A
HOH
591
6
HOH
HOH
754
A
HOH
592
6
HOH
HOH
755
A
HOH
593
6
HOH
HOH
756
A
HOH
594
6
HOH
HOH
757
A
HOH
595
6
HOH
HOH
758
A
HOH
596
6
HOH
HOH
759
A
HOH
597
6
HOH
HOH
760
A
HOH
598
6
HOH
HOH
761
A
HOH
599
6
HOH
HOH
762
A
HOH
600
6
HOH
HOH
763
A
HOH
601
6
HOH
HOH
764
A
HOH
602
6
HOH
HOH
765
A
HOH
603
6
HOH
HOH
766
A
HOH
604
6
HOH
HOH
767
A
HOH
605
6
HOH
HOH
768
A
HOH
606
6
HOH
HOH
769
A
HOH
607
6
HOH
HOH
770
A
HOH
608
6
HOH
HOH
771
A
HOH
609
6
HOH
HOH
772
A
HOH
610
6
HOH
HOH
773
A
HOH
611
6
HOH
HOH
774
A
HOH
612
6
HOH
HOH
775
A
HOH
613
6
HOH
HOH
776
A
HOH
614
6
HOH
HOH
777
A
HOH
615
6
HOH
HOH
778
A
HOH
616
6
HOH
HOH
779
A
HOH
617
6
HOH
HOH
780
A
HOH
618
6
HOH
HOH
781
A
HOH
619
6
HOH
HOH
782
A
HOH
620
6
HOH
HOH
783
A
HOH
621
6
HOH
HOH
784
A
HOH
622
6
HOH
HOH
785
A
HOH
623
6
HOH
HOH
786
A
HOH
624
6
HOH
HOH
787
A
HOH
625
6
HOH
HOH
788
A
HOH
626
6
HOH
HOH
789
A
HOH
627
6
HOH
HOH
790
A
HOH
628
6
HOH
HOH
791
A
HOH
629
6
HOH
HOH
792
A
HOH
630
6
HOH
HOH
793
A
HOH
631
6
HOH
HOH
794
A
HOH
632
6
HOH
HOH
795
A
HOH
633
6
HOH
HOH
796
A
HOH
634
6
HOH
HOH
797
A
HOH
635
6
HOH
HOH
798
A
HOH
636
6
HOH
HOH
799
A
HOH
637
6
HOH
HOH
800
A
HOH
638
6
HOH
HOH
801
A
HOH
639
6
HOH
HOH
802
A
HOH
640
6
HOH
HOH
803
A
HOH
641
6
HOH
HOH
804
A
HOH
642
6
HOH
HOH
805
A
HOH
643
6
HOH
HOH
806
A
HOH
644
6
HOH
HOH
807
A
HOH
645
6
HOH
HOH
808
A
HOH
646
6
HOH
HOH
809
A
HOH
647
6
HOH
HOH
810
A
HOH
648
6
HOH
HOH
811
A
HOH
649
6
HOH
HOH
812
A
HOH
650
6
HOH
HOH
813
A
HOH
651
6
HOH
HOH
814
A
HOH
652
6
HOH
HOH
815
A
HOH
653
6
HOH
HOH
816
A
HOH
654
6
HOH
HOH
817
A
HOH
655
6
HOH
HOH
818
A
HOH
656
6
HOH
HOH
819
A
HOH
657
6
HOH
HOH
820
A
HOH
658
6
HOH
HOH
821
A
HOH
659
6
HOH
HOH
822
A
HOH
660
6
HOH
HOH
823
A
HOH
661
6
HOH
HOH
824
A
HOH
662
6
HOH
HOH
825
A
HOH
663
6
HOH
HOH
826
A
HOH
664
6
HOH
HOH
827
A
HOH
665
6
HOH
HOH
828
A
HOH
666
6
HOH
HOH
829
A
n
1
0
A
n
2
24
A
n
3
25
A
n
4
26
A
n
5
27
A
n
6
28
A
n
7
29
A
n
8
30
A
n
9
31
A
n
10
32
A
n
11
33
A
n
12
34
A
n
13
35
A
n
14
36
A
n
15
37
A
VAL
38
n
16
VAL
38
A
VAL
39
n
17
VAL
39
A
ASN
40
n
18
ASN
40
A
VAL
41
n
19
VAL
41
A
PRO
42
n
20
PRO
42
A
GLN
43
n
21
GLN
43
A
PHE
44
n
22
PHE
44
A
ASP
45
n
23
ASP
45
A
ALA
46
n
24
ALA
46
A
ASP
47
n
25
ASP
47
A
SER
48
n
26
SER
48
A
ALA
49
n
27
ALA
49
A
TYR
50
n
28
TYR
50
A
LEU
51
n
29
LEU
51
A
TYR
52
n
30
TYR
52
A
VAL
53
n
31
VAL
53
A
LYS
54
n
32
LYS
54
A
ASN
55
n
33
ASN
55
A
GLN
56
n
34
GLN
56
A
VAL
57
n
35
VAL
57
A
ASP
58
n
36
ASP
58
A
PHE
59
n
37
PHE
59
A
GLY
60
n
38
GLY
60
A
PRO
61
n
39
PRO
61
A
ARG
62
n
40
ARG
62
A
VAL
63
n
41
VAL
63
A
PRO
64
n
42
PRO
64
A
ASN
65
n
43
ASN
65
A
THR
66
n
44
THR
66
A
LYS
67
n
45
LYS
67
A
GLU
68
n
46
GLU
68
A
HIS
69
n
47
HIS
69
A
VAL
70
n
48
VAL
70
A
ALA
71
n
49
ALA
71
A
CYS
72
n
50
CYS
72
A
GLY
73
n
51
GLY
73
A
ASN
74
n
52
ASN
74
A
TYR
75
n
53
TYR
75
A
LEU
76
n
54
LEU
76
A
ALA
77
n
55
ALA
77
A
GLY
78
n
56
GLY
78
A
LYS
79
n
57
LYS
79
A
LEU
80
n
58
LEU
80
A
GLU
81
n
59
GLU
81
A
ALA
82
n
60
ALA
82
A
PHE
83
n
61
PHE
83
A
GLY
84
n
62
GLY
84
A
ALA
85
n
63
ALA
85
A
LYS
86
n
64
LYS
86
A
VAL
87
n
65
VAL
87
A
THR
88
n
66
THR
88
A
ASN
89
n
67
ASN
89
A
GLN
90
n
68
GLN
90
A
TYR
91
n
69
TYR
91
A
ALA
92
n
70
ALA
92
A
ASP
93
n
71
ASP
93
A
LEU
94
n
72
LEU
94
A
ILE
95
n
73
ILE
95
A
ALA
96
n
74
ALA
96
A
TYR
97
n
75
TYR
97
A
ASP
98
n
76
ASP
98
A
GLY
99
n
77
GLY
99
A
THR
100
n
78
THR
100
A
LEU
101
n
79
LEU
101
A
LEU
102
n
80
LEU
102
A
LYS
103
n
81
LYS
103
A
ALA
104
n
82
ALA
104
A
ARG
105
n
83
ARG
105
A
ASN
106
n
84
ASN
106
A
ILE
107
n
85
ILE
107
A
ILE
108
n
86
ILE
108
A
GLY
109
n
87
GLY
109
A
SER
110
n
88
SER
110
A
TYR
111
n
89
TYR
111
A
LYS
112
n
90
LYS
112
A
PRO
113
n
91
PRO
113
A
GLU
114
n
92
GLU
114
A
SER
115
n
93
SER
115
A
LYS
116
n
94
LYS
116
A
LYS
117
n
95
LYS
117
A
ARG
118
n
96
ARG
118
A
ILE
119
n
97
ILE
119
A
ALA
120
n
98
ALA
120
A
LEU
121
n
99
LEU
121
A
PHE
122
n
100
PHE
122
A
ALA
123
n
101
ALA
123
A
HIS
124
n
102
HIS
124
A
TRP
125
n
103
TRP
125
A
ASP
126
n
104
ASP
126
A
THR
127
n
105
THR
127
A
ARG
128
n
106
ARG
128
A
PRO
129
n
107
PRO
129
A
TRP
130
n
108
TRP
130
A
ALA
131
n
109
ALA
131
A
ASP
132
n
110
ASP
132
A
ASN
133
n
111
ASN
133
A
ASP
134
n
112
ASP
134
A
ALA
135
n
113
ALA
135
A
ASP
136
n
114
ASP
136
A
GLU
137
n
115
GLU
137
A
LYS
138
n
116
LYS
138
A
ASN
139
n
117
ASN
139
A
HIS
140
n
118
HIS
140
A
HIS
141
n
119
HIS
141
A
THR
142
n
120
THR
142
A
PRO
143
n
121
PRO
143
A
ILE
144
n
122
ILE
144
A
LEU
145
n
123
LEU
145
A
GLY
146
n
124
GLY
146
A
ALA
147
n
125
ALA
147
A
ASN
148
n
126
ASN
148
A
ASP
149
n
127
ASP
149
A
GLY
150
n
128
GLY
150
A
ALA
151
n
129
ALA
151
A
SER
152
n
130
SER
152
A
GLY
153
n
131
GLY
153
A
VAL
154
n
132
VAL
154
A
GLY
155
n
133
GLY
155
A
ALA
156
n
134
ALA
156
A
LEU
157
n
135
LEU
157
A
LEU
158
n
136
LEU
158
A
GLU
159
n
137
GLU
159
A
ILE
160
n
138
ILE
160
A
ALA
161
n
139
ALA
161
A
ARG
162
n
140
ARG
162
A
LEU
163
n
141
LEU
163
A
VAL
164
n
142
VAL
164
A
ASN
165
n
143
ASN
165
A
GLN
166
n
144
GLN
166
A
GLN
167
n
145
GLN
167
A
GLN
168
n
146
GLN
168
A
PRO
169
n
147
PRO
169
A
GLU
170
n
148
GLU
170
A
LEU
171
n
149
LEU
171
A
GLY
172
n
150
GLY
172
A
ILE
173
n
151
ILE
173
A
ASP
174
n
152
ASP
174
A
ILE
175
n
153
ILE
175
A
ILE
176
n
154
ILE
176
A
PHE
177
n
155
PHE
177
A
LEU
178
n
156
LEU
178
A
ASP
179
n
157
ASP
179
A
ALA
180
n
158
ALA
180
A
GLU
181
n
159
GLU
181
A
ASP
182
n
160
ASP
182
A
TYR
183
n
161
TYR
183
A
GLY
184
n
162
GLY
184
A
THR
185
n
163
THR
185
A
PRO
186
n
164
PRO
186
A
GLN
187
n
165
GLN
187
A
PHE
188
n
166
PHE
188
A
TYR
189
n
167
TYR
189
A
GLU
190
n
168
GLU
190
A
GLY
191
n
169
GLY
191
A
LYS
192
n
170
LYS
192
A
HIS
193
n
171
HIS
193
A
LYS
194
n
172
LYS
194
A
GLU
195
n
173
GLU
195
A
GLU
196
n
174
GLU
196
A
ALA
197
n
175
ALA
197
A
TRP
198
n
176
TRP
198
A
CYS
199
n
177
CYS
199
A
LEU
200
n
178
LEU
200
A
GLY
201
n
179
GLY
201
A
SER
202
n
180
SER
202
A
GLN
203
n
181
GLN
203
A
TYR
204
n
182
TYR
204
A
TRP
205
n
183
TRP
205
A
SER
206
n
184
SER
206
A
ARG
207
n
185
ARG
207
A
ASN
208
n
186
ASN
208
A
PRO
209
n
187
PRO
209
A
HIS
210
n
188
HIS
210
A
VAL
211
n
189
VAL
211
A
GLN
212
n
190
GLN
212
A
GLY
213
n
191
GLY
213
A
TYR
214
n
192
TYR
214
A
ASN
215
n
193
ASN
215
A
ALA
216
n
194
ALA
216
A
ARG
217
n
195
ARG
217
A
PHE
218
n
196
PHE
218
A
GLY
219
n
197
GLY
219
A
ILE
220
n
198
ILE
220
A
LEU
221
n
199
LEU
221
A
LEU
222
n
200
LEU
222
A
ASP
223
n
201
ASP
223
A
MSE
224
n
202
MSE
224
A
VAL
225
n
203
VAL
225
A
GLY
226
n
204
GLY
226
A
GLY
227
n
205
GLY
227
A
GLU
228
n
206
GLU
228
A
ASN
229
n
207
ASN
229
A
SER
230
n
208
SER
230
A
VAL
231
n
209
VAL
231
A
PHE
232
n
210
PHE
232
A
LEU
233
n
211
LEU
233
A
LYS
234
n
212
LYS
234
A
GLU
235
n
213
GLU
235
A
GLY
236
n
214
GLY
236
A
TYR
237
n
215
TYR
237
A
SER
238
n
216
SER
238
A
GLU
239
n
217
GLU
239
A
GLU
240
n
218
GLU
240
A
PHE
241
n
219
PHE
241
A
ALA
242
n
220
ALA
242
A
PRO
243
n
221
PRO
243
A
ASP
244
n
222
ASP
244
A
ILE
245
n
223
ILE
245
A
ASN
246
n
224
ASN
246
A
LYS
247
n
225
LYS
247
A
LYS
248
n
226
LYS
248
A
VAL
249
n
227
VAL
249
A
TRP
250
n
228
TRP
250
A
LYS
251
n
229
LYS
251
A
ALA
252
n
230
ALA
252
A
ALA
253
n
231
ALA
253
A
LYS
254
n
232
LYS
254
A
LYS
255
n
233
LYS
255
A
ALA
256
n
234
ALA
256
A
GLY
257
n
235
GLY
257
A
TYR
258
n
236
TYR
258
A
GLY
259
n
237
GLY
259
A
LYS
260
n
238
LYS
260
A
THR
261
n
239
THR
261
A
PHE
262
n
240
PHE
262
A
ILE
263
n
241
ILE
263
A
ASP
264
n
242
ASP
264
A
GLU
265
n
243
GLU
265
A
ARG
266
n
244
ARG
266
A
GLY
267
n
245
GLY
267
A
ASP
268
n
246
ASP
268
A
THR
269
n
247
THR
269
A
ILE
270
n
248
ILE
270
A
THR
271
n
249
THR
271
A
ASP
272
n
250
ASP
272
A
ASP
273
n
251
ASP
273
A
HIS
274
n
252
HIS
274
A
LEU
275
n
253
LEU
275
A
PHE
276
n
254
PHE
276
A
ILE
277
n
255
ILE
277
A
ASN
278
n
256
ASN
278
A
ARG
279
n
257
ARG
279
A
LEU
280
n
258
LEU
280
A
ALA
281
n
259
ALA
281
A
ARG
282
n
260
ARG
282
A
ILE
283
n
261
ILE
283
A
LYS
284
n
262
LYS
284
A
THR
285
n
263
THR
285
A
ILE
286
n
264
ILE
286
A
ASP
287
n
265
ASP
287
A
ILE
288
n
266
ILE
288
A
ILE
289
n
267
ILE
289
A
PRO
290
n
268
PRO
290
A
ASN
291
n
269
ASN
291
A
n
270
292
A
n
271
293
A
n
272
294
A
n
273
295
A
GLY
296
n
274
GLY
296
A
PHE
297
n
275
PHE
297
A
PRO
298
n
276
PRO
298
A
PRO
299
n
277
PRO
299
A
THR
300
n
278
THR
300
A
TRP
301
n
279
TRP
301
A
HIS
302
n
280
HIS
302
A
THR
303
n
281
THR
303
A
ILE
304
n
282
ILE
304
A
HIS
305
n
283
HIS
305
A
ASP
306
n
284
ASP
306
A
ASN
307
n
285
ASN
307
A
MSE
308
n
286
MSE
308
A
ASP
309
n
287
ASP
309
A
HIS
310
n
288
HIS
310
A
ILE
311
n
289
ILE
311
A
ASP
312
n
290
ASP
312
A
LYS
313
n
291
LYS
313
A
ASN
314
n
292
ASN
314
A
THR
315
n
293
THR
315
A
LEU
316
n
294
LEU
316
A
LYS
317
n
295
LYS
317
A
ALA
318
n
296
ALA
318
A
VAL
319
n
297
VAL
319
A
GLY
320
n
298
GLY
320
A
GLN
321
n
299
GLN
321
A
THR
322
n
300
THR
322
A
VAL
323
n
301
VAL
323
A
LEU
324
n
302
LEU
324
A
GLU
325
n
303
GLU
325
A
VAL
326
n
304
VAL
326
A
ILE
327
n
305
ILE
327
A
TYR
328
n
306
TYR
328
A
ASN
329
n
307
ASN
329
A
GLU
330
n
308
GLU
330
A
LYS
331
n
309
LYS
331
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
149
A
OD2
ASP
127
1_555
A
ZN
403
D
ZN
ZN
1_555
A
ASP
182
A
OD2
ASP
160
1_555
93.1
A
ASP
149
A
OD2
ASP
127
1_555
A
ZN
403
D
ZN
ZN
1_555
A
HIS
302
A
NE2
HIS
280
1_555
109.5
A
ASP
182
A
OD2
ASP
160
1_555
A
ZN
403
D
ZN
ZN
1_555
A
HIS
302
A
NE2
HIS
280
1_555
110.9
A
ASP
149
A
OD2
ASP
127
1_555
A
ZN
403
D
ZN
ZN
1_555
A
UNL
401
B
O2
UNL
1_555
105.0
A
ASP
182
A
OD2
ASP
160
1_555
A
ZN
403
D
ZN
ZN
1_555
A
UNL
401
B
O2
UNL
1_555
114.7
A
HIS
302
A
NE2
HIS
280
1_555
A
ZN
403
D
ZN
ZN
1_555
A
UNL
401
B
O2
UNL
1_555
119.9
A
MSE
224
SELENOMETHIONINE
A
MSE
202
MET
A
MSE
308
SELENOMETHIONINE
A
MSE
286
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
94
A
N
LEU
72
A
O
LEU
102
A
O
LEU
80
A
N
ILE
107
A
N
ILE
85
A
O
PHE
177
A
O
PHE
155
A
O
ILE
176
A
O
ILE
154
A
N
LEU
121
A
N
LEU
99
A
N
PHE
122
A
N
PHE
100
A
O
ILE
220
A
O
ILE
198
A
N
LEU
221
A
N
LEU
199
A
O
ILE
286
A
O
ILE
264
A
N
LYS
234
A
N
LYS
212
A
O
GLU
265
A
O
GLU
243
1
A
CG1
VAL
38
A
CG1
VAL
16
1
Y
1
A
CG2
VAL
38
A
CG2
VAL
16
1
Y
1
A
CD
GLU
114
A
CD
GLU
92
1
Y
1
A
OE1
GLU
114
A
OE1
GLU
92
1
Y
1
A
OE2
GLU
114
A
OE2
GLU
92
1
Y
1
A
CD
LYS
116
A
CD
LYS
94
1
Y
1
A
CE
LYS
116
A
CE
LYS
94
1
Y
1
A
NZ
LYS
116
A
NZ
LYS
94
1
Y
1
A
CD
LYS
117
A
CD
LYS
95
1
Y
1
A
CE
LYS
117
A
CE
LYS
95
1
Y
1
A
NZ
LYS
117
A
NZ
LYS
95
1
Y
1
A
CG
GLU
137
A
CG
GLU
115
1
Y
1
A
CD
GLU
137
A
CD
GLU
115
1
Y
1
A
OE1
GLU
137
A
OE1
GLU
115
1
Y
1
A
OE2
GLU
137
A
OE2
GLU
115
1
Y
1
A
CG
LYS
138
A
CG
LYS
116
1
Y
1
A
CD
LYS
138
A
CD
LYS
116
1
Y
1
A
CE
LYS
138
A
CE
LYS
116
1
Y
1
A
NZ
LYS
138
A
NZ
LYS
116
1
Y
1
A
CG
GLU
190
A
CG
GLU
168
1
Y
1
A
CD
GLU
190
A
CD
GLU
168
1
Y
1
A
OE1
GLU
190
A
OE1
GLU
168
1
Y
1
A
OE2
GLU
190
A
OE2
GLU
168
1
Y
1
A
CG
LYS
192
A
CG
LYS
170
1
Y
1
A
CD
LYS
192
A
CD
LYS
170
1
Y
1
A
CE
LYS
192
A
CE
LYS
170
1
Y
1
A
NZ
LYS
192
A
NZ
LYS
170
1
Y
1
A
CG
LYS
194
A
CG
LYS
172
1
Y
1
A
CD
LYS
194
A
CD
LYS
172
1
Y
1
A
CE
LYS
194
A
CE
LYS
172
1
Y
1
A
NZ
LYS
194
A
NZ
LYS
172
1
Y
1
A
CG
GLU
196
A
CG
GLU
174
1
Y
1
A
CD
GLU
196
A
CD
GLU
174
1
Y
1
A
OE1
GLU
196
A
OE1
GLU
174
1
Y
1
A
OE2
GLU
196
A
OE2
GLU
174
1
Y
1
A
CG
ASP
244
A
CG
ASP
222
1
Y
1
A
OD1
ASP
244
A
OD1
ASP
222
1
Y
1
A
OD2
ASP
244
A
OD2
ASP
222
1
Y
1
A
CE
LYS
247
A
CE
LYS
225
1
Y
1
A
NZ
LYS
247
A
NZ
LYS
225
1
Y
1
A
CE
LYS
254
A
CE
LYS
232
1
Y
1
A
NZ
LYS
254
A
NZ
LYS
232
1
Y
1
A
CE
LYS
284
A
CE
LYS
262
1
Y
1
A
NZ
LYS
284
A
NZ
LYS
262
1
Y
1
A
CD
LYS
331
A
CD
LYS
309
1
Y
1
A
CE
LYS
331
A
CE
LYS
309
1
Y
1
A
NZ
LYS
331
A
NZ
LYS
309
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLY
24
A
GLY
2
1
Y
1
A
GLY
25
A
GLY
3
1
Y
1
A
LYS
26
A
LYS
4
1
Y
1
A
ALA
27
A
ALA
5
1
Y
1
A
THR
28
A
THR
6
1
Y
1
A
GLY
29
A
GLY
7
1
Y
1
A
THR
30
A
THR
8
1
Y
1
A
ASN
31
A
ASN
9
1
Y
1
A
GLU
32
A
GLU
10
1
Y
1
A
GLN
33
A
GLN
11
1
Y
1
A
SER
34
A
SER
12
1
Y
1
A
GLU
35
A
GLU
13
1
Y
1
A
LYS
36
A
LYS
14
1
Y
1
A
VAL
37
A
VAL
15
1
Y
1
A
ASP
292
A
ASP
270
1
Y
1
A
PRO
293
A
PRO
271
1
Y
1
A
GLU
294
A
GLU
272
1
Y
1
A
THR
295
A
THR
273
1
Y
1
A
MSE
224
62.69
66.53
1
A
ALA
242
-143.07
49.69
51.530
17.9771
6.540
-0.1700
-0.1400
0.0100
-0.0600
0.6000
-0.2200
0.9830
0.9720
1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.PHOSPHATE (PO4) FROM THE CRYSTALLIZATION BUFFER AND 1,2-ETHANEDIOL (EDO) USED AS A CRYOPROTECTANT WERE MODELED INTO THE STRUCTURE. 5. THE MODELING OF ZINC IS SUPPORTED BY X-RAY FLUORESCENCE SCANS. THE OCCUPANCY OF THE ZN ATOM WAS REDUCED TO 0.5 FOR ITS REDUCED SCATTERING INDICATED BY ELECTRON DENSITY MAPS. 6. AN UNKNOWN LIGAND (UNL) WAS MODELED AT THE PUTATIVE ACTIVE SITE.
0.1566
0.1181
0.1200
1.3000
27.993
3265
64273
5.1000
93.5300
1.000
0.250
1.4850
0.0280
RANDOM
1
THROUGHOUT
0.000
MAD
0.0430
0.0450
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
1.3000
27.993
329
2610
22
0
2259
0.013
0.022
2440
0.001
0.020
1621
1.356
1.938
3342
0.898
3.000
3970
5.811
5.000
323
37.544
24.793
121
11.458
15.000
388
21.435
15.000
11
0.087
0.200
361
0.007
0.021
2798
0.001
0.020
499
2.485
3.000
1492
1.282
3.000
608
3.525
5.000
2412
4.760
8.000
948
6.630
11.000
912
1.709
3.000
4061
12.521
5.000
335
5.551
5.000
3989
0.2690
0.2080
1.3340
244
4377
4621
20
91.0900
12.234
1.30
27.993
4FUU
64313
64313
0.055
1
7.100
1.900
93.600
0.435
1.300
1.330
1.9
8984
4638
0.435
1
1.900
91.300
0.355
1.330
1.370
1.9
8777
4528
0.355
1
1.900
91.500
0.289
1.370
1.410
2.4
8584
4424
0.289
1
1.900
92.100
0.230
1.410
1.450
3.0
8359
4326
0.230
1
1.900
92.300
0.185
1.450
1.500
3.7
8115
4218
0.185
1
1.900
92.900
0.149
1.500
1.550
4.7
7839
4084
0.149
1
1.900
92.800
0.121
1.550
1.610
5.7
7588
3952
0.121
1
1.900
93.200
0.100
1.610
1.680
6.7
7309
3806
0.100
1
1.900
93.300
0.089
1.680
1.750
7.5
6980
3663
0.089
1
1.900
94.000
0.076
1.750
1.840
8.2
6646
3512
0.076
1
1.900
94.100
0.067
1.840
1.940
9.2
6297
3333
0.067
1
1.900
94.300
0.060
1.940
2.060
10.2
5971
3208
0.060
1
1.900
94.600
0.056
2.060
2.200
11.2
5468
3005
0.056
1
1.800
95.600
0.053
2.200
2.370
11.5
4887
2806
0.053
1
1.700
95.700
0.045
2.370
2.600
13.4
4952
2604
0.045
1
1.900
95.900
0.046
2.600
2.910
12.8
4638
2346
0.046
1
2.000
96.700
0.048
2.910
3.360
12.1
4181
2105
0.048
1
2.000
97.100
0.035
3.360
4.110
17.2
3477
1763
0.035
1
2.000
97.000
0.028
4.110
5.810
22.6
2605
1339
0.028
1
1.900
95.300
0.033
5.810
27.993
20.4
1261
653
0.033
1
1.900
85.300
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
SCALA
package
3.3.20
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0110
data reduction
MOSFLM
phasing
SHELXD
Crystal structure of a leucine aminopeptidase precursor (BT_2548) from Bacteroides thetaiotaomicron VPI-5482 at 1.30 A resolution
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
PACKING ANALYSIS SUGGEST THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.
A
ASP
45
A
ASP
23
HELX_P
A
ASP
58
A
ASP
36
1
1
14
A
THR
66
A
THR
44
HELX_P
A
PHE
83
A
PHE
61
1
2
18
A
ASP
136
A
ASP
114
HELX_P
A
HIS
140
A
HIS
118
5
3
5
A
GLY
150
A
GLY
128
HELX_P
A
GLN
167
A
GLN
145
1
4
18
A
LYS
194
A
LYS
172
HELX_P
A
TRP
198
A
TRP
176
5
5
5
A
CYS
199
A
CYS
177
HELX_P
A
ASN
208
A
ASN
186
1
6
10
A
GLU
235
A
GLU
213
HELX_P
A
ALA
242
A
ALA
220
1
7
8
A
ALA
242
A
ALA
220
HELX_P
A
ALA
256
A
ALA
234
1
8
15
A
ASP
272
A
ASP
250
HELX_P
A
ALA
281
A
ALA
259
1
9
10
A
ASN
307
A
ASN
285
HELX_P
A
ILE
311
A
ILE
289
5
10
5
A
ASP
312
A
ASP
290
HELX_P
A
GLU
330
A
GLU
308
1
11
19
covale
1.318
both
A
ASP
223
A
C
ASP
201
1_555
A
MSE
224
A
N
MSE
202
1_555
covale
1.331
both
A
MSE
224
A
C
MSE
202
1_555
A
VAL
225
A
N
VAL
203
1_555
covale
1.335
both
A
ASN
307
A
C
ASN
285
1_555
A
MSE
308
A
N
MSE
286
1_555
covale
1.331
both
A
MSE
308
A
C
MSE
286
1_555
A
ASP
309
A
N
ASP
287
1_555
metalc
1.908
A
ASP
149
A
OD2
ASP
127
1_555
A
ZN
403
D
ZN
ZN
1_555
metalc
2.160
A
ASP
182
A
OD2
ASP
160
1_555
A
ZN
403
D
ZN
ZN
1_555
metalc
1.946
A
HIS
302
A
NE2
HIS
280
1_555
A
ZN
403
D
ZN
ZN
1_555
metalc
1.813
A
UNL
401
B
O2
UNL
1_555
A
ZN
403
D
ZN
ZN
1_555
HYDROLASE
phosphorylase/hydrolase like fold, peptidase family M28, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HYDROLASE
Q8A4P9_BACTN
UNP
1
24
Q8A4P9
GGKATGTNEQSEKVVVNVPQFDADSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLK
ARNIIGSYKPESKKRIALFAHWDTRPWADNDADEKNHHTPILGANDGASGVGALLEIARLVNQQQPELGIDIIFLDAEDY
GTPQFYEGKHKEEAWCLGSQYWSRNPHVQGYNARFGILLDMVGGENSVFLKEGYSEEFAPDINKKVWKAAKKAGYGKTFI
DERGDTITDDHLFINRLARIKTIDIIPNDPETGFPPTWHTIHDNMDHIDKNTLKAVGQTVLEVIYNEK
24
331
4FUU
24
331
Q8A4P9
A
1
2
309
1
expression tag
GLY
0
4FUU
A
Q8A4P9
UNP
1
6
2
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
A
LYS
86
A
LYS
64
A
ILE
95
A
ILE
73
A
LEU
101
A
LEU
79
A
TYR
111
A
TYR
89
A
GLY
172
A
GLY
150
A
LEU
178
A
LEU
156
A
ARG
118
A
ARG
96
A
HIS
124
A
HIS
102
A
PHE
218
A
PHE
196
A
LEU
222
A
LEU
200
A
THR
285
A
THR
263
A
ILE
288
A
ILE
266
A
PHE
232
A
PHE
210
A
LYS
234
A
LYS
212
A
PHE
262
A
PHE
240
A
ARG
266
A
ARG
244
BINDING SITE FOR RESIDUE PO4 A 402
A
PO4
402
Software
5
BINDING SITE FOR RESIDUE ZN A 403
A
ZN
403
Software
3
BINDING SITE FOR RESIDUE EDO A 404
A
EDO
404
Software
7
BINDING SITE FOR RESIDUE EDO A 405
A
EDO
405
Software
6
BINDING SITE FOR RESIDUE EDO A 406
A
EDO
406
Software
6
A
HIS
305
A
HIS
283
5
1_555
A
ASN
307
A
ASN
285
5
1_555
A
ASP
309
A
ASP
287
5
1_555
A
HIS
310
A
HIS
288
5
1_555
A
HOH
655
H
HOH
5
1_555
A
ASP
149
A
ASP
127
3
1_555
A
ASP
182
A
ASP
160
3
1_555
A
HIS
302
A
HIS
280
3
1_555
A
LEU
233
A
LEU
211
7
1_555
A
ASP
268
A
ASP
246
7
1_555
A
ILE
270
A
ILE
248
7
1_555
A
ILE
289
A
ILE
267
7
1_555
A
PRO
290
A
PRO
268
7
1_555
A
ASN
291
A
ASN
269
7
1_555
A
HOH
693
H
HOH
7
1_555
A
GLY
84
A
GLY
62
6
1_655
A
GLY
236
A
GLY
214
6
1_555
A
GLU
240
A
GLU
218
6
1_555
A
THR
269
A
THR
247
6
1_555
A
EDO
406
G
EDO
6
1_555
A
HOH
589
H
HOH
6
1_655
A
GLY
84
A
GLY
62
6
1_655
A
ASN
165
A
ASN
143
6
1_655
A
GLY
236
A
GLY
214
6
1_555
A
GLU
239
A
GLU
217
6
1_555
A
EDO
405
F
EDO
6
1_555
A
HOH
578
H
HOH
6
1_555
1
P 1