0.012106
0.006989
0.000000
0.000000
0.013979
0.000000
0.000000
0.000000
0.004338
0.000000
0.000000
0.000000
Wang, F.
Zhou, M.
Singh, S.
Bingman, C.A.
Thorson, J.S.
Phillips Jr., G.N.
Enzyme Discovery for Natural Product Biosynthesis (NatPro)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
82.605
82.605
230.516
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
81
1277
1282
10.1002/prot.24289
23526584
Crystal structure of SsfS6, the putative C-glycosyltransferase involved in SF2575 biosynthesis.
2013
100
1
100
1
CCD
2012-06-02
MARMOSAIC 300 mm CCD
CCD
2012-03-31
MARMOSAIC 300 mm CCD
Kohzu
SINGLE WAVELENGTH
M
x-ray
1
Diamond [111]
SINGLE WAVELENGTH
M
x-ray
1
1.12715
1.0
0.97856
1.0
21-ID-D
APS
1.12715
SYNCHROTRON
APS BEAMLINE 21-ID-D
21-ID-G
APS
0.97856
SYNCHROTRON
APS BEAMLINE 21-ID-G
43225.000
SsfS6
1
man
polymer
18.015
water
110
nat
water
no
yes
HHHHHHSSGVPRGSH(MSE)RILVIAGCSEGFV(MSE)PLVPLSWALRAAGHEVLVAASEN(MSE)GPTVTGAGLPFAPT
CPSLD(MSE)PEVLSWDREGNRTT(MSE)PREEKPLLEHIGRGYGRLVLR(MSE)RDEALALAERWKPDLVLTETYSLTG
PLVAATLGIPWIEQSIRLASPELIKSAGVGELAPELAELGLTDFPDPLLSIDVCPPS(MSE)EAQPKPGTTK(MSE)RYV
PYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLA
AGQFPLSAI(MSE)PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACAR
IRDDSSYVGNARRLAAE(MSE)ATLPTPADIVRLIEQA
HHHHHHSSGVPRGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSW
DREGNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELI
KSAGVGELAPELAELGLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPL
PNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIMPACDVVVHHGGHGTTLTCLSEG
VPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIEQA
A
NatPro-GO.120792
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
ssfS6
746675
Streptomyces sp. SF2575
562
Escherichia coli
2
2.63
53.16
VAPOR DIFFUSION, SITTING DROP
8.2
Protein Solution (11.4 mg/ml SsfS6 protein, 50mM Tris pH 8.0) mixed in a 1:1 ratio with the well solution (1.13~1.40 M Sodium phosphate monobasic monohydrate / Potassium phosphate dibasic, pH 8.2) Cryoprotected with 100% Paratone-N, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
Enzyme Discovery for Natural Product Biosynthesis
NatPro
PSI:Biology
software
repository
Initial release
Derived calculations
Database references
Database references
Refinement description
1
0
2012-07-25
1
1
2012-10-24
1
2
2013-05-01
1
3
2013-07-03
1
4
2017-11-15
Y
RCSB
Y
RCSB
2012-07-07
REL
REL
HOH
water
HOH
1
2
HOH
HOH
401
A
HOH
2
2
HOH
HOH
402
A
HOH
3
2
HOH
HOH
403
A
HOH
4
2
HOH
HOH
404
A
HOH
5
2
HOH
HOH
405
A
HOH
8
2
HOH
HOH
406
A
HOH
9
2
HOH
HOH
407
A
HOH
10
2
HOH
HOH
408
A
HOH
11
2
HOH
HOH
409
A
HOH
12
2
HOH
HOH
410
A
HOH
13
2
HOH
HOH
411
A
HOH
14
2
HOH
HOH
412
A
HOH
15
2
HOH
HOH
413
A
HOH
16
2
HOH
HOH
414
A
HOH
17
2
HOH
HOH
415
A
HOH
18
2
HOH
HOH
416
A
HOH
19
2
HOH
HOH
417
A
HOH
21
2
HOH
HOH
418
A
HOH
22
2
HOH
HOH
419
A
HOH
23
2
HOH
HOH
420
A
HOH
24
2
HOH
HOH
421
A
HOH
25
2
HOH
HOH
422
A
HOH
26
2
HOH
HOH
423
A
HOH
27
2
HOH
HOH
424
A
HOH
28
2
HOH
HOH
425
A
HOH
29
2
HOH
HOH
426
A
HOH
30
2
HOH
HOH
427
A
HOH
31
2
HOH
HOH
428
A
HOH
32
2
HOH
HOH
429
A
HOH
33
2
HOH
HOH
430
A
HOH
34
2
HOH
HOH
431
A
HOH
35
2
HOH
HOH
432
A
HOH
36
2
HOH
HOH
433
A
HOH
37
2
HOH
HOH
434
A
HOH
38
2
HOH
HOH
435
A
HOH
39
2
HOH
HOH
436
A
HOH
40
2
HOH
HOH
437
A
HOH
41
2
HOH
HOH
438
A
HOH
42
2
HOH
HOH
439
A
HOH
43
2
HOH
HOH
440
A
HOH
44
2
HOH
HOH
441
A
HOH
45
2
HOH
HOH
442
A
HOH
46
2
HOH
HOH
443
A
HOH
48
2
HOH
HOH
444
A
HOH
49
2
HOH
HOH
445
A
HOH
50
2
HOH
HOH
446
A
HOH
51
2
HOH
HOH
447
A
HOH
52
2
HOH
HOH
448
A
HOH
54
2
HOH
HOH
449
A
HOH
56
2
HOH
HOH
450
A
HOH
57
2
HOH
HOH
451
A
HOH
58
2
HOH
HOH
452
A
HOH
59
2
HOH
HOH
453
A
HOH
60
2
HOH
HOH
454
A
HOH
61
2
HOH
HOH
455
A
HOH
62
2
HOH
HOH
456
A
HOH
63
2
HOH
HOH
457
A
HOH
64
2
HOH
HOH
458
A
HOH
65
2
HOH
HOH
459
A
HOH
66
2
HOH
HOH
460
A
HOH
67
2
HOH
HOH
461
A
HOH
68
2
HOH
HOH
462
A
HOH
69
2
HOH
HOH
463
A
HOH
70
2
HOH
HOH
464
A
HOH
71
2
HOH
HOH
465
A
HOH
72
2
HOH
HOH
466
A
HOH
73
2
HOH
HOH
467
A
HOH
74
2
HOH
HOH
468
A
HOH
75
2
HOH
HOH
469
A
HOH
76
2
HOH
HOH
470
A
HOH
77
2
HOH
HOH
471
A
HOH
78
2
HOH
HOH
472
A
HOH
79
2
HOH
HOH
473
A
HOH
80
2
HOH
HOH
474
A
HOH
81
2
HOH
HOH
475
A
HOH
82
2
HOH
HOH
476
A
HOH
83
2
HOH
HOH
477
A
HOH
84
2
HOH
HOH
478
A
HOH
86
2
HOH
HOH
479
A
HOH
87
2
HOH
HOH
480
A
HOH
88
2
HOH
HOH
481
A
HOH
89
2
HOH
HOH
482
A
HOH
90
2
HOH
HOH
483
A
HOH
91
2
HOH
HOH
484
A
HOH
92
2
HOH
HOH
485
A
HOH
93
2
HOH
HOH
486
A
HOH
94
2
HOH
HOH
487
A
HOH
95
2
HOH
HOH
488
A
HOH
96
2
HOH
HOH
489
A
HOH
97
2
HOH
HOH
490
A
HOH
98
2
HOH
HOH
491
A
HOH
99
2
HOH
HOH
492
A
HOH
100
2
HOH
HOH
493
A
HOH
101
2
HOH
HOH
494
A
HOH
102
2
HOH
HOH
495
A
HOH
103
2
HOH
HOH
496
A
HOH
104
2
HOH
HOH
497
A
HOH
105
2
HOH
HOH
498
A
HOH
106
2
HOH
HOH
499
A
HOH
107
2
HOH
HOH
500
A
HOH
108
2
HOH
HOH
501
A
HOH
109
2
HOH
HOH
502
A
HOH
110
2
HOH
HOH
503
A
HOH
111
2
HOH
HOH
504
A
HOH
112
2
HOH
HOH
505
A
HOH
113
2
HOH
HOH
506
A
HOH
114
2
HOH
HOH
507
A
HOH
115
2
HOH
HOH
508
A
HOH
116
2
HOH
HOH
509
A
HOH
117
2
HOH
HOH
510
A
n
1
-14
A
n
2
-13
A
n
3
-12
A
n
4
-11
A
n
5
-10
A
n
6
-9
A
n
7
-8
A
n
8
-7
A
n
9
-6
A
n
10
-5
A
n
11
-4
A
n
12
-3
A
n
13
-2
A
n
14
-1
A
HIS
0
n
15
HIS
0
A
MSE
1
n
16
MSE
1
A
ARG
2
n
17
ARG
2
A
ILE
3
n
18
ILE
3
A
LEU
4
n
19
LEU
4
A
VAL
5
n
20
VAL
5
A
ILE
6
n
21
ILE
6
A
ALA
7
n
22
ALA
7
A
GLY
8
n
23
GLY
8
A
CYS
9
n
24
CYS
9
A
SER
10
n
25
SER
10
A
GLU
11
n
26
GLU
11
A
GLY
12
n
27
GLY
12
A
PHE
13
n
28
PHE
13
A
VAL
14
n
29
VAL
14
A
MSE
15
n
30
MSE
15
A
PRO
16
n
31
PRO
16
A
LEU
17
n
32
LEU
17
A
VAL
18
n
33
VAL
18
A
PRO
19
n
34
PRO
19
A
LEU
20
n
35
LEU
20
A
SER
21
n
36
SER
21
A
TRP
22
n
37
TRP
22
A
ALA
23
n
38
ALA
23
A
LEU
24
n
39
LEU
24
A
ARG
25
n
40
ARG
25
A
ALA
26
n
41
ALA
26
A
ALA
27
n
42
ALA
27
A
GLY
28
n
43
GLY
28
A
HIS
29
n
44
HIS
29
A
GLU
30
n
45
GLU
30
A
VAL
31
n
46
VAL
31
A
LEU
32
n
47
LEU
32
A
VAL
33
n
48
VAL
33
A
ALA
34
n
49
ALA
34
A
ALA
35
n
50
ALA
35
A
SER
36
n
51
SER
36
A
GLU
37
n
52
GLU
37
A
ASN
38
n
53
ASN
38
A
MSE
39
n
54
MSE
39
A
GLY
40
n
55
GLY
40
A
PRO
41
n
56
PRO
41
A
THR
42
n
57
THR
42
A
VAL
43
n
58
VAL
43
A
THR
44
n
59
THR
44
A
GLY
45
n
60
GLY
45
A
ALA
46
n
61
ALA
46
A
GLY
47
n
62
GLY
47
A
LEU
48
n
63
LEU
48
A
PRO
49
n
64
PRO
49
A
PHE
50
n
65
PHE
50
A
ALA
51
n
66
ALA
51
A
PRO
52
n
67
PRO
52
A
THR
53
n
68
THR
53
A
CYS
54
n
69
CYS
54
A
PRO
55
n
70
PRO
55
A
SER
56
n
71
SER
56
A
LEU
57
n
72
LEU
57
A
ASP
58
n
73
ASP
58
A
MSE
59
n
74
MSE
59
A
PRO
60
n
75
PRO
60
A
GLU
61
n
76
GLU
61
A
VAL
62
n
77
VAL
62
A
LEU
63
n
78
LEU
63
A
SER
64
n
79
SER
64
A
TRP
65
n
80
TRP
65
A
ASP
66
n
81
ASP
66
A
ARG
67
n
82
ARG
67
A
GLU
68
n
83
GLU
68
A
GLY
69
n
84
GLY
69
A
ASN
70
n
85
ASN
70
A
ARG
71
n
86
ARG
71
A
THR
72
n
87
THR
72
A
THR
73
n
88
THR
73
A
MSE
74
n
89
MSE
74
A
PRO
75
n
90
PRO
75
A
ARG
76
n
91
ARG
76
A
GLU
77
n
92
GLU
77
A
GLU
78
n
93
GLU
78
A
LYS
79
n
94
LYS
79
A
PRO
80
n
95
PRO
80
A
LEU
81
n
96
LEU
81
A
LEU
82
n
97
LEU
82
A
GLU
83
n
98
GLU
83
A
HIS
84
n
99
HIS
84
A
ILE
85
n
100
ILE
85
A
GLY
86
n
101
GLY
86
A
ARG
87
n
102
ARG
87
A
GLY
88
n
103
GLY
88
A
TYR
89
n
104
TYR
89
A
GLY
90
n
105
GLY
90
A
ARG
91
n
106
ARG
91
A
LEU
92
n
107
LEU
92
A
VAL
93
n
108
VAL
93
A
LEU
94
n
109
LEU
94
A
ARG
95
n
110
ARG
95
A
MSE
96
n
111
MSE
96
A
ARG
97
n
112
ARG
97
A
ASP
98
n
113
ASP
98
A
GLU
99
n
114
GLU
99
A
ALA
100
n
115
ALA
100
A
LEU
101
n
116
LEU
101
A
ALA
102
n
117
ALA
102
A
LEU
103
n
118
LEU
103
A
ALA
104
n
119
ALA
104
A
GLU
105
n
120
GLU
105
A
ARG
106
n
121
ARG
106
A
TRP
107
n
122
TRP
107
A
LYS
108
n
123
LYS
108
A
PRO
109
n
124
PRO
109
A
ASP
110
n
125
ASP
110
A
LEU
111
n
126
LEU
111
A
VAL
112
n
127
VAL
112
A
LEU
113
n
128
LEU
113
A
THR
114
n
129
THR
114
A
GLU
115
n
130
GLU
115
A
THR
116
n
131
THR
116
A
TYR
117
n
132
TYR
117
A
SER
118
n
133
SER
118
A
LEU
119
n
134
LEU
119
A
THR
120
n
135
THR
120
A
GLY
121
n
136
GLY
121
A
PRO
122
n
137
PRO
122
A
LEU
123
n
138
LEU
123
A
VAL
124
n
139
VAL
124
A
ALA
125
n
140
ALA
125
A
ALA
126
n
141
ALA
126
A
THR
127
n
142
THR
127
A
LEU
128
n
143
LEU
128
A
GLY
129
n
144
GLY
129
A
ILE
130
n
145
ILE
130
A
PRO
131
n
146
PRO
131
A
TRP
132
n
147
TRP
132
A
ILE
133
n
148
ILE
133
A
GLU
134
n
149
GLU
134
A
GLN
135
n
150
GLN
135
A
SER
136
n
151
SER
136
A
ILE
137
n
152
ILE
137
A
ARG
138
n
153
ARG
138
A
LEU
139
n
154
LEU
139
A
ALA
140
n
155
ALA
140
A
SER
141
n
156
SER
141
A
PRO
142
n
157
PRO
142
A
GLU
143
n
158
GLU
143
A
LEU
144
n
159
LEU
144
A
ILE
145
n
160
ILE
145
A
LYS
146
n
161
LYS
146
A
SER
147
n
162
SER
147
A
ALA
148
n
163
ALA
148
A
GLY
149
n
164
GLY
149
A
VAL
150
n
165
VAL
150
A
GLY
151
n
166
GLY
151
A
GLU
152
n
167
GLU
152
A
LEU
153
n
168
LEU
153
A
ALA
154
n
169
ALA
154
A
PRO
155
n
170
PRO
155
A
GLU
156
n
171
GLU
156
A
LEU
157
n
172
LEU
157
A
ALA
158
n
173
ALA
158
A
GLU
159
n
174
GLU
159
A
LEU
160
n
175
LEU
160
A
GLY
161
n
176
GLY
161
A
LEU
162
n
177
LEU
162
A
THR
163
n
178
THR
163
A
ASP
164
n
179
ASP
164
A
PHE
165
n
180
PHE
165
A
PRO
166
n
181
PRO
166
A
ASP
167
n
182
ASP
167
A
PRO
168
n
183
PRO
168
A
LEU
169
n
184
LEU
169
A
LEU
170
n
185
LEU
170
A
SER
171
n
186
SER
171
A
ILE
172
n
187
ILE
172
A
ASP
173
n
188
ASP
173
A
VAL
174
n
189
VAL
174
A
CYS
175
n
190
CYS
175
A
PRO
176
n
191
PRO
176
A
PRO
177
n
192
PRO
177
A
SER
178
n
193
SER
178
A
MSE
179
n
194
MSE
179
A
GLU
180
n
195
GLU
180
A
n
196
181
A
n
197
182
A
n
198
183
A
n
199
184
A
PRO
185
n
200
PRO
185
A
GLY
186
n
201
GLY
186
A
THR
187
n
202
THR
187
A
THR
188
n
203
THR
188
A
LYS
189
n
204
LYS
189
A
MSE
190
n
205
MSE
190
A
ARG
191
n
206
ARG
191
A
TYR
192
n
207
TYR
192
A
VAL
193
n
208
VAL
193
A
PRO
194
n
209
PRO
194
A
TYR
195
n
210
TYR
195
A
ASN
196
n
211
ASN
196
A
GLY
197
n
212
GLY
197
A
ARG
198
n
213
ARG
198
A
ASN
199
n
214
ASN
199
A
ASP
200
n
215
ASP
200
A
GLN
201
n
216
GLN
201
A
VAL
202
n
217
VAL
202
A
PRO
203
n
218
PRO
203
A
SER
204
n
219
SER
204
A
TRP
205
n
220
TRP
205
A
VAL
206
n
221
VAL
206
A
PHE
207
n
222
PHE
207
A
GLU
208
n
223
GLU
208
A
GLU
209
n
224
GLU
209
A
ARG
210
n
225
ARG
210
A
LYS
211
n
226
LYS
211
A
GLN
212
n
227
GLN
212
A
PRO
213
n
228
PRO
213
A
ARG
214
n
229
ARG
214
A
LEU
215
n
230
LEU
215
A
CYS
216
n
231
CYS
216
A
LEU
217
n
232
LEU
217
A
THR
218
n
233
THR
218
A
n
234
219
A
n
235
220
A
n
236
221
A
n
237
222
A
n
238
223
A
n
239
224
A
n
240
225
A
n
241
226
A
n
242
227
A
n
243
228
A
n
244
229
A
n
245
230
A
n
246
231
A
n
247
232
A
n
248
233
A
n
249
234
A
LEU
235
n
250
LEU
235
A
SER
236
n
251
SER
236
A
LEU
237
n
252
LEU
237
A
LEU
238
n
253
LEU
238
A
GLN
239
n
254
GLN
239
A
ALA
240
n
255
ALA
240
A
LEU
241
n
256
LEU
241
A
SER
242
n
257
SER
242
A
GLN
243
n
258
GLN
243
A
GLU
244
n
259
GLU
244
A
LEU
245
n
260
LEU
245
A
PRO
246
n
261
PRO
246
A
LYS
247
n
262
LYS
247
A
LEU
248
n
263
LEU
248
A
GLY
249
n
264
GLY
249
A
PHE
250
n
265
PHE
250
A
GLU
251
n
266
GLU
251
A
VAL
252
n
267
VAL
252
A
VAL
253
n
268
VAL
253
A
VAL
254
n
269
VAL
254
A
ALA
255
n
270
ALA
255
A
VAL
256
n
271
VAL
256
A
SER
257
n
272
SER
257
A
ASP
258
n
273
ASP
258
A
n
274
259
A
n
275
260
A
n
276
261
A
n
277
262
A
n
278
263
A
n
279
264
A
n
280
265
A
n
281
266
A
LEU
267
n
282
LEU
267
A
PRO
268
n
283
PRO
268
A
GLU
269
n
284
GLU
269
A
GLY
270
n
285
GLY
270
A
VAL
271
n
286
VAL
271
A
LEU
272
n
287
LEU
272
A
ALA
273
n
288
ALA
273
A
ALA
274
n
289
ALA
274
A
GLY
275
n
290
GLY
275
A
GLN
276
n
291
GLN
276
A
PHE
277
n
292
PHE
277
A
PRO
278
n
293
PRO
278
A
LEU
279
n
294
LEU
279
A
SER
280
n
295
SER
280
A
ALA
281
n
296
ALA
281
A
ILE
282
n
297
ILE
282
A
MSE
283
n
298
MSE
283
A
PRO
284
n
299
PRO
284
A
ALA
285
n
300
ALA
285
A
CYS
286
n
301
CYS
286
A
ASP
287
n
302
ASP
287
A
VAL
288
n
303
VAL
288
A
VAL
289
n
304
VAL
289
A
VAL
290
n
305
VAL
290
A
HIS
291
n
306
HIS
291
A
HIS
292
n
307
HIS
292
A
GLY
293
n
308
GLY
293
A
GLY
294
n
309
GLY
294
A
HIS
295
n
310
HIS
295
A
GLY
296
n
311
GLY
296
A
THR
297
n
312
THR
297
A
THR
298
n
313
THR
298
A
LEU
299
n
314
LEU
299
A
THR
300
n
315
THR
300
A
CYS
301
n
316
CYS
301
A
LEU
302
n
317
LEU
302
A
SER
303
n
318
SER
303
A
GLU
304
n
319
GLU
304
A
GLY
305
n
320
GLY
305
A
VAL
306
n
321
VAL
306
A
PRO
307
n
322
PRO
307
A
GLN
308
n
323
GLN
308
A
VAL
309
n
324
VAL
309
A
SER
310
n
325
SER
310
A
VAL
311
n
326
VAL
311
A
PRO
312
n
327
PRO
312
A
VAL
313
n
328
VAL
313
A
ILE
314
n
329
ILE
314
A
ALA
315
n
330
ALA
315
A
GLU
316
n
331
GLU
316
A
VAL
317
n
332
VAL
317
A
TRP
318
n
333
TRP
318
A
ASP
319
n
334
ASP
319
A
SER
320
n
335
SER
320
A
ALA
321
n
336
ALA
321
A
ARG
322
n
337
ARG
322
A
LEU
323
n
338
LEU
323
A
LEU
324
n
339
LEU
324
A
HIS
325
n
340
HIS
325
A
ALA
326
n
341
ALA
326
A
ALA
327
n
342
ALA
327
A
GLY
328
n
343
GLY
328
A
ALA
329
n
344
ALA
329
A
GLY
330
n
345
GLY
330
A
VAL
331
n
346
VAL
331
A
GLU
332
n
347
GLU
332
A
VAL
333
n
348
VAL
333
A
PRO
334
n
349
PRO
334
A
n
350
335
A
n
351
336
A
n
352
337
A
n
353
338
A
n
354
339
A
n
355
340
A
n
356
341
A
SER
342
n
357
SER
342
A
VAL
343
n
358
VAL
343
A
LEU
344
n
359
LEU
344
A
ALA
345
n
360
ALA
345
A
ALA
346
n
361
ALA
346
A
CYS
347
n
362
CYS
347
A
ALA
348
n
363
ALA
348
A
ARG
349
n
364
ARG
349
A
ILE
350
n
365
ILE
350
A
ARG
351
n
366
ARG
351
A
ASP
352
n
367
ASP
352
A
ASP
353
n
368
ASP
353
A
SER
354
n
369
SER
354
A
SER
355
n
370
SER
355
A
TYR
356
n
371
TYR
356
A
VAL
357
n
372
VAL
357
A
GLY
358
n
373
GLY
358
A
ASN
359
n
374
ASN
359
A
ALA
360
n
375
ALA
360
A
ARG
361
n
376
ARG
361
A
ARG
362
n
377
ARG
362
A
LEU
363
n
378
LEU
363
A
ALA
364
n
379
ALA
364
A
ALA
365
n
380
ALA
365
A
GLU
366
n
381
GLU
366
A
MSE
367
n
382
MSE
367
A
ALA
368
n
383
ALA
368
A
THR
369
n
384
THR
369
A
LEU
370
n
385
LEU
370
A
PRO
371
n
386
PRO
371
A
THR
372
n
387
THR
372
A
PRO
373
n
388
PRO
373
A
ALA
374
n
389
ALA
374
A
ASP
375
n
390
ASP
375
A
ILE
376
n
391
ILE
376
A
VAL
377
n
392
VAL
377
A
ARG
378
n
393
ARG
378
A
LEU
379
n
394
LEU
379
A
ILE
380
n
395
ILE
380
A
GLU
381
n
396
GLU
381
A
GLN
382
n
397
GLN
382
A
n
398
383
A
author_and_software_defined_assembly
PISA
2
dimeric
3100
-12
28200
A
MSE
1
SELENOMETHIONINE
A
MSE
16
MET
A
MSE
15
SELENOMETHIONINE
A
MSE
30
MET
A
MSE
39
SELENOMETHIONINE
A
MSE
54
MET
A
MSE
59
SELENOMETHIONINE
A
MSE
74
MET
A
MSE
74
SELENOMETHIONINE
A
MSE
89
MET
A
MSE
96
SELENOMETHIONINE
A
MSE
111
MET
A
MSE
179
SELENOMETHIONINE
A
MSE
194
MET
A
MSE
190
SELENOMETHIONINE
A
MSE
205
MET
A
MSE
283
SELENOMETHIONINE
A
MSE
298
MET
A
MSE
367
SELENOMETHIONINE
A
MSE
382
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_444
-y-1,-x-1,-z-1/6
crystal symmetry operation
-41.3025000000
-71.5380284796
-38.4193333333
A
O
THR
53
A
O
THR
68
A
N
ALA
35
A
N
ALA
50
A
O
ALA
34
A
O
ALA
49
A
N
VAL
5
A
N
VAL
20
A
N
LEU
4
A
N
LEU
19
A
O
LEU
111
A
O
LEU
126
A
N
VAL
112
A
N
VAL
127
A
O
ILE
133
A
O
ILE
148
A
N
GLU
134
A
N
GLU
149
A
O
ILE
172
A
O
ILE
187
A
N
ASP
173
A
N
ASP
188
A
O
THR
188
A
O
THR
203
A
O
LEU
272
A
O
LEU
287
A
N
VAL
252
A
N
VAL
267
A
O
VAL
253
A
O
VAL
268
A
N
LEU
215
A
N
LEU
230
A
N
CYS
216
A
N
CYS
231
A
O
VAL
290
A
O
VAL
305
A
N
VAL
289
A
N
VAL
304
A
O
VAL
309
A
O
VAL
324
A
N
SER
310
A
N
SER
325
A
O
VAL
331
A
O
VAL
346
1
A
HIS
-14
A
HIS
1
1
Y
1
A
HIS
-13
A
HIS
2
1
Y
1
A
HIS
-12
A
HIS
3
1
Y
1
A
HIS
-11
A
HIS
4
1
Y
1
A
HIS
-10
A
HIS
5
1
Y
1
A
HIS
-9
A
HIS
6
1
Y
1
A
SER
-8
A
SER
7
1
Y
1
A
SER
-7
A
SER
8
1
Y
1
A
GLY
-6
A
GLY
9
1
Y
1
A
VAL
-5
A
VAL
10
1
Y
1
A
PRO
-4
A
PRO
11
1
Y
1
A
ARG
-3
A
ARG
12
1
Y
1
A
GLY
-2
A
GLY
13
1
Y
1
A
SER
-1
A
SER
14
1
Y
1
A
ALA
181
A
ALA
196
1
Y
1
A
GLN
182
A
GLN
197
1
Y
1
A
PRO
183
A
PRO
198
1
Y
1
A
LYS
184
A
LYS
199
1
Y
1
A
PHE
219
A
PHE
234
1
Y
1
A
GLY
220
A
GLY
235
1
Y
1
A
THR
221
A
THR
236
1
Y
1
A
ARG
222
A
ARG
237
1
Y
1
A
VAL
223
A
VAL
238
1
Y
1
A
PRO
224
A
PRO
239
1
Y
1
A
LEU
225
A
LEU
240
1
Y
1
A
PRO
226
A
PRO
241
1
Y
1
A
ASN
227
A
ASN
242
1
Y
1
A
THR
228
A
THR
243
1
Y
1
A
ASN
229
A
ASN
244
1
Y
1
A
THR
230
A
THR
245
1
Y
1
A
ILE
231
A
ILE
246
1
Y
1
A
PRO
232
A
PRO
247
1
Y
1
A
GLY
233
A
GLY
248
1
Y
1
A
GLY
234
A
GLY
249
1
Y
1
A
LYS
259
A
LYS
274
1
Y
1
A
LEU
260
A
LEU
275
1
Y
1
A
ALA
261
A
ALA
276
1
Y
1
A
GLN
262
A
GLN
277
1
Y
1
A
THR
263
A
THR
278
1
Y
1
A
LEU
264
A
LEU
279
1
Y
1
A
GLN
265
A
GLN
280
1
Y
1
A
PRO
266
A
PRO
281
1
Y
1
A
TRP
335
A
TRP
350
1
Y
1
A
GLU
336
A
GLU
351
1
Y
1
A
GLN
337
A
GLN
352
1
Y
1
A
ALA
338
A
ALA
353
1
Y
1
A
GLY
339
A
GLY
354
1
Y
1
A
VAL
340
A
VAL
355
1
Y
1
A
GLU
341
A
GLU
356
1
Y
1
A
ALA
383
A
ALA
398
1
Y
1
A
A
O
O
HOH
HOH
485
487
2.16
1
A
SER
178
-68.69
10.74
1
A
ARG
198
-132.02
-89.64
1
A
ASP
200
-170.16
147.28
1
A
GLN
201
-169.61
92.74
1
A
VAL
202
-40.85
98.67
1
A
SER
236
-106.32
-74.19
1
A
LEU
237
70.31
-70.58
1
A
PRO
278
-61.87
95.79
1
A
VAL
311
-113.43
79.52
1
A
VAL
313
-125.94
-68.07
133.150
39.7201
6.700
0.2617
0.2241
0.2260
2.3970
30.7630
979
19126
18899
5.1800
98.8100
1.000
0.480
0.7525
0.3200
RANDOM, ASSIGN TEST SET IN THIN RESOLUTION SHELLS
1,2
1.340
SAD
29.8000
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
2.3970
30.7630
110
2730
0
0
2620
0.004
2700
0.861
3686
0.044
433
0.004
478
14.008
1003
0.3414
0.3037
2.5238
131
2411
2542
7
96.0000
0.3503
0.2794
2.6818
173
2486
2659
7
100.0000
0.2722
0.2633
2.8888
97
2577
2674
7
100.0000
0.3403
0.2417
3.1792
147
2555
2702
7
100.0000
0.2830
0.2129
3.6386
147
2561
2708
7
100.0000
0.1994
0.1949
4.5818
147
2624
2771
7
100.0000
0.2627
0.2274
30.7655
137
2706
2843
7
96.0000
70.76
2.400
50.000
4FZR
19209
19017
0
0
0.094
0.923
1,2
8.700
11.500
99.000
2.400
2.440
858
0.801
1,2
10.100
92.200
2.440
2.490
932
0.821
1,2
11.900
100.000
2.490
2.530
917
0.847
1,2
12.000
100.000
2.530
2.590
953
0.854
1,2
11.800
100.000
2.590
2.640
915
0.897
1,2
12.000
100.000
2.640
2.700
937
0.919
1,2
11.900
100.000
2.700
2.770
950
0.985
1,2
11.800
100.000
2.770
2.850
940
1.036
1,2
12.000
100.000
2.850
2.930
931
1.103
1,2
11.900
100.000
2.930
3.020
942
1.112
1,2
11.900
100.000
3.020
3.130
944
1.119
1,2
11.800
100.000
3.130
3.260
951
1.104
1,2
11.800
100.000
3.260
3.410
950
1.012
1,2
11.800
100.000
3.410
3.580
970
0.943
1,2
11.600
100.000
3.580
3.810
954
0.907
1,2
11.500
100.000
3.810
4.100
967
0.929
1,2
11.400
100.000
4.100
4.520
983
0.836
1,2
11.200
99.900
4.520
5.170
1001
0.747
1,2
11.100
100.000
5.170
6.510
1014
0.778
1,2
11.100
100.000
6.510
50.000
1008
0.602
1,2
8.900
88.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1063
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
PHASER
SsfS6
Crystal Structure of SsfS6, Streptomyces sp. SF2575 glycosyltransferase
1
N
N
2
N
N
A
SER
10
A
SER
25
HELX_P
A
MSE
15
A
MSE
30
1
1
6
A
LEU
17
A
LEU
32
HELX_P
A
ALA
27
A
ALA
42
1
2
11
A
MSE
39
A
MSE
54
HELX_P
A
ALA
46
A
ALA
61
1
3
8
A
ASP
58
A
ASP
73
HELX_P
A
SER
64
A
SER
79
1
4
7
A
GLU
77
A
GLU
92
HELX_P
A
LYS
108
A
LYS
123
1
5
32
A
LEU
119
A
LEU
134
HELX_P
A
GLY
129
A
GLY
144
1
6
11
A
PRO
142
A
PRO
157
HELX_P
A
LEU
153
A
LEU
168
1
7
12
A
LEU
153
A
LEU
168
HELX_P
A
GLU
159
A
GLU
174
1
8
7
A
PRO
176
A
PRO
191
HELX_P
A
GLU
180
A
GLU
195
5
9
5
A
PRO
203
A
PRO
218
HELX_P
A
GLU
208
A
GLU
223
1
10
6
A
LEU
237
A
LEU
252
HELX_P
A
LEU
245
A
LEU
260
1
11
9
A
PRO
246
A
PRO
261
HELX_P
A
GLY
249
A
GLY
264
5
12
4
A
PRO
278
A
PRO
293
HELX_P
A
MSE
283
A
MSE
298
1
13
6
A
PRO
284
A
PRO
299
HELX_P
A
CYS
286
A
CYS
301
5
14
3
A
GLY
294
A
GLY
309
HELX_P
A
GLU
304
A
GLU
319
1
15
11
A
ILE
314
A
ILE
329
HELX_P
A
GLU
316
A
GLU
331
5
16
3
A
VAL
317
A
VAL
332
HELX_P
A
ALA
327
A
ALA
342
1
17
11
A
VAL
343
A
VAL
358
HELX_P
A
ASP
353
A
ASP
368
1
18
11
A
SER
354
A
SER
369
HELX_P
A
ALA
368
A
ALA
383
1
19
15
A
THR
372
A
THR
387
HELX_P
A
GLU
381
A
GLU
396
1
20
10
covale
1.329
A
HIS
0
A
C
HIS
15
1_555
A
MSE
1
A
N
MSE
16
1_555
covale
1.328
A
MSE
1
A
C
MSE
16
1_555
A
ARG
2
A
N
ARG
17
1_555
covale
1.327
A
VAL
14
A
C
VAL
29
1_555
A
MSE
15
A
N
MSE
30
1_555
covale
1.341
A
MSE
15
A
C
MSE
30
1_555
A
PRO
16
A
N
PRO
31
1_555
covale
1.328
A
ASN
38
A
C
ASN
53
1_555
A
MSE
39
A
N
MSE
54
1_555
covale
1.332
A
MSE
39
A
C
MSE
54
1_555
A
GLY
40
A
N
GLY
55
1_555
covale
1.323
A
ASP
58
A
C
ASP
73
1_555
A
MSE
59
A
N
MSE
74
1_555
covale
1.345
A
MSE
59
A
C
MSE
74
1_555
A
PRO
60
A
N
PRO
75
1_555
covale
1.328
A
THR
73
A
C
THR
88
1_555
A
MSE
74
A
N
MSE
89
1_555
covale
1.343
A
MSE
74
A
C
MSE
89
1_555
A
PRO
75
A
N
PRO
90
1_555
covale
1.332
A
ARG
95
A
C
ARG
110
1_555
A
MSE
96
A
N
MSE
111
1_555
covale
1.328
A
MSE
96
A
C
MSE
111
1_555
A
ARG
97
A
N
ARG
112
1_555
covale
1.329
A
SER
178
A
C
SER
193
1_555
A
MSE
179
A
N
MSE
194
1_555
covale
1.330
A
MSE
179
A
C
MSE
194
1_555
A
GLU
180
A
N
GLU
195
1_555
covale
1.330
A
LYS
189
A
C
LYS
204
1_555
A
MSE
190
A
N
MSE
205
1_555
covale
1.327
A
A
MSE
190
A
C
MSE
205
1_555
A
ARG
191
A
N
ARG
206
1_555
covale
1.326
B
A
MSE
190
A
C
MSE
205
1_555
A
ARG
191
A
N
ARG
206
1_555
covale
1.328
A
ILE
282
A
C
ILE
297
1_555
A
MSE
283
A
N
MSE
298
1_555
covale
1.343
A
MSE
283
A
C
MSE
298
1_555
A
PRO
284
A
N
PRO
299
1_555
covale
1.329
A
GLU
366
A
C
GLU
381
1_555
A
MSE
367
A
N
MSE
382
1_555
covale
1.328
A
MSE
367
A
C
MSE
382
1_555
A
ALA
368
A
N
ALA
383
1_555
TRANSFERASE
Structural Genomics, PSI-Biology, Protein Structure Initiative, Enzyme Discovery for Natural Product Biosynthesis, NATPRO, Glycosyltransferase, transferase
D6MSX4_9ACTO
UNP
1
1
D6MSX4
MRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEKP
LLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSAGVGELAPELAEL
GLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQA
LSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIMPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDS
ARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIEQA
1
383
4FZR
1
383
D6MSX4
A
1
16
398
1
EXPRESSION TAG
HIS
-14
4FZR
A
D6MSX4
UNP
1
1
EXPRESSION TAG
HIS
-13
4FZR
A
D6MSX4
UNP
2
1
EXPRESSION TAG
HIS
-12
4FZR
A
D6MSX4
UNP
3
1
EXPRESSION TAG
HIS
-11
4FZR
A
D6MSX4
UNP
4
1
EXPRESSION TAG
HIS
-10
4FZR
A
D6MSX4
UNP
5
1
EXPRESSION TAG
HIS
-9
4FZR
A
D6MSX4
UNP
6
1
EXPRESSION TAG
SER
-8
4FZR
A
D6MSX4
UNP
7
1
EXPRESSION TAG
SER
-7
4FZR
A
D6MSX4
UNP
8
1
EXPRESSION TAG
GLY
-6
4FZR
A
D6MSX4
UNP
9
1
EXPRESSION TAG
VAL
-5
4FZR
A
D6MSX4
UNP
10
1
EXPRESSION TAG
PRO
-4
4FZR
A
D6MSX4
UNP
11
1
EXPRESSION TAG
ARG
-3
4FZR
A
D6MSX4
UNP
12
1
EXPRESSION TAG
GLY
-2
4FZR
A
D6MSX4
UNP
13
1
EXPRESSION TAG
SER
-1
4FZR
A
D6MSX4
UNP
14
1
EXPRESSION TAG
HIS
0
4FZR
A
D6MSX4
UNP
15
7
6
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
PHE
50
A
PHE
65
A
CYS
54
A
CYS
69
A
GLU
30
A
GLU
45
A
SER
36
A
SER
51
A
ARG
2
A
ARG
17
A
ILE
6
A
ILE
21
A
LEU
111
A
LEU
126
A
GLU
115
A
GLU
130
A
TRP
132
A
TRP
147
A
GLN
135
A
GLN
150
A
LEU
170
A
LEU
185
A
ASP
173
A
ASP
188
A
THR
188
A
THR
203
A
LYS
189
A
LYS
204
A
VAL
271
A
VAL
286
A
ALA
274
A
ALA
289
A
GLU
251
A
GLU
266
A
VAL
254
A
VAL
269
A
ARG
214
A
ARG
229
A
CYS
216
A
CYS
231
A
VAL
288
A
VAL
303
A
HIS
291
A
HIS
306
A
GLN
308
A
GLN
323
A
SER
310
A
SER
325
A
GLY
330
A
GLY
345
A
GLU
332
A
GLU
347
178
P 61 2 2